Psyllid ID: psy17460

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITSDYNNS
Secondary Structure (PSIPRED)
cccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccEEEEccccccHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccEEEEccccccccccccHHHHHHHHccccEEEEEcccccHHHHHHHHHHcccccEEEEEEEEccccccccccccccEEEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccccccEEEcccccHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccccEEEEEEcccccccccHccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccEEEEEEEEEEEccccHccHccccEEEEEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
MKLKHIEQYLQQLTfnfsnpkvhleqyhtpphLAATILHTIQNnyndidgktvldlgcgsgiltFGSILLGADFCFALECDKEILDIFIdnknefeitnCDAILFEINeksldssvFKQKVDtvimnppfgtrncgidLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITSDYNNS
Flexible Loop (DISEMBL)
MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITSDYNNS
Low Complexity Region (SEG)
MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITSDYNNS
Disordered region (IsUnstruct)
*****IEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITS*****
Disordered Region (DISOPRED)
**LKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRI*TSD****
Disordered Region (DISEMBL)
MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITSDYNNS
Disordered Region (DISPRO)
*KLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITSD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITSDYNNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q9NRN9	209	Methyltransferase-like pr	yes	N/A	0.930	0.961	0.492	2e-50
Q8K1A0	209	Methyltransferase-like pr	yes	N/A	0.930	0.961	0.492	9e-48
Q57732	219	Uncharacterized protein M	yes	N/A	0.916	0.904	0.314	2e-19
Q3IIC0	293	Ribosomal protein L11 met	yes	N/A	0.222	0.163	0.458	1e-05
Q9JW08	295	Ribosomal protein L11 met	yes	N/A	0.347	0.254	0.362	3e-05
A7MXI3	295	Ribosomal protein L11 met	yes	N/A	0.245	0.179	0.415	5e-05
Q9JXW2	295	Ribosomal protein L11 met	yes	N/A	0.347	0.254	0.35	5e-05
Q9SNQ2	380	Protein arginine N-methyl	no	N/A	0.416	0.236	0.285	8e-05
A2Y953	382	Protein arginine N-methyl	N/A	N/A	0.416	0.235	0.285	8e-05
A6LJG3	258	Ribosomal protein L11 met	yes	N/A	0.300	0.251	0.416	0.0002

>sp|Q9NRN9|METL5_HUMAN Methyltransferase-like protein 5 OS=Homo sapiens GN=METTL5 PE=1 SV=1

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/209 (49%), Positives = 144/209 (68%), Gaps = 8/209 (3%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
           ++LK +E  LQQ+   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct: 4   VRLKELESRLQQVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGC 62

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D +  ++    L S+   + 
Sbjct: 63  GVLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDV---CLLSNRMSKS 119

Query: 121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISK-VVYSLHKTSTRESILKKIQAFKNVEQVD 178
            DTVIMNPPFGT+ N G D+AF++ A ++++  VYSLHK+STRE + KK   +K   ++D
Sbjct: 120 FDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHVQKKAAEWKI--KID 177

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
           +IAE++YDL  SYKFHKK   DIEVDL+R
Sbjct: 178 IIAELRYDLPASYKFHKKKSVDIEVDLIR 206

Probable methyltransferase.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8K1A0|METL5_MOUSE Methyltransferase-like protein 5 OS=Mus musculus GN=Mettl5 PE=2 SV=2

 Score =  189 bits (481), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 103/209 (49%), Positives = 142/209 (67%), Gaps = 8/209 (3%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
           +KLK +E  LQ++   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct: 4   LKLKELESRLQEVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKAVADLGCGC 62

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D I  ++   SL S+   + 
Sbjct: 63  GVLSIGAAMLGAGLCVGFDIDEDALEIFNKNVEEFELTNVDMIQCDVY--SL-SNRMSKL 119

Query: 121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISK-VVYSLHKTSTRESILKKIQAFKNVEQVD 178
            DTVIMNPPFGT+ N G D+AF++ A  +++  VYSLHK+STRE I KK   +K   +++
Sbjct: 120 FDTVIMNPPFGTKNNKGTDMAFLKTALGMARTAVYSLHKSSTREHIQKKAAEWK--VKIE 177

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
           +IAE++YDL   Y FHKK   DIEVDL+R
Sbjct: 178 IIAELRYDLPALYNFHKKKSVDIEVDLIR 206

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q57732|Y284_METJA Uncharacterized protein MJ0284 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0284 PE=4 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 112/216 (51%), Gaps = 18/216 (8%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNN-YNDIDGKTVLDLGCG 59
           +K KH+E  L  L     NPK  LEQY     LAA IL    N+ YN++    V+DLGCG
Sbjct: 2   IKKKHLEMMLDSLK-RHPNPKADLEQYTIDGKLAADILFFAVNDFYNNV----VIDLGCG 56

Query: 60  SGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD----SS 115
           +G L  GS +LGA     ++ D+E ++   +N  +    N D   + ++ + +D    ++
Sbjct: 57  TGRLAIGSKILGAKRAIGIDIDRESIEAAKENAKKL---NVDVDFYCMDIRDVDDEFLNN 113

Query: 116 VFKQKVD---TVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFK 172
           V  +  D    VI NPPFG +    D  F+  A +I  ++Y++H   T++ ++K ++   
Sbjct: 114 VLGEDRDLKRVVIQNPPFGAQKKHADRVFLDKALEIGDIIYTIHNYPTKDFVIKYVE--D 171

Query: 173 NVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRI 208
              ++  I E  + +   Y+FHKK + +I V + RI
Sbjct: 172 KGGKITHIYEAFFRIPAIYEFHKKKVVEIPVVIFRI 207

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q3IIC0|PRMA_PSEHT Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=prmA PE=3 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 47  DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNE 94
           D+ GKTV+D GCGSGIL   +I LGA+    ++ D + L+  +DN N 
Sbjct: 156 DLTGKTVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALEASLDNANR 203

Methylates ribosomal protein L11.

Pseudoalteromonas haloplanktis (strain TAC 125) (taxid: 326442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9JW08|PRMA_NEIMA Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=prmA PE=3 SV=1

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 49  DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN 108
           +G++VLD GCGSGILT  ++ LGA F   ++ D++ +    DN    E  N DA  F  +
Sbjct: 163 NGESVLDYGCGSGILTIAALKLGAGFAVGVDIDEQAVRAGKDNA---EQNNVDAQFFLPD 219

Query: 109 EKSLDSSVFKQKVDTVIMNP 128
              L    F   V  ++ NP
Sbjct: 220 --GLPQGQFDVVVANILANP 237

Methylates ribosomal protein L11.

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A7MXI3|PRMA_VIBHB Ribosomal protein L11 methyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=prmA PE=3 SV=1

 Score = 48.1 bits (113), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 47  DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN 99
           D+ GKTV+D GCGSGIL   +I LGA+    ++ D + L    DN     + N
Sbjct: 157 DLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQASRDNAERNGVAN 209

Methylates ribosomal protein L11.

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9JXW2|PRMA_NEIMB Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis serogroup B (strain MC58) GN=prmA PE=3 SV=1

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 49  DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN 108
           +G++VLD GCGSGILT  ++ LGA F   ++ D++ +    DN  +    N DA  F  +
Sbjct: 163 NGESVLDYGCGSGILTIAALKLGAGFAVGVDIDEQAVRAGKDNAAQ---NNVDAQFFLPD 219

Query: 109 EKSLDSSVFKQKVDTVIMNP 128
              L    F   V  ++ NP
Sbjct: 220 --GLPQGQFDVVVANILANP 237

Methylates ribosomal protein L11.

Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SNQ2|ANM10_ORYSJ Protein arginine N-methyltransferase PRMT10 OS=Oryza sativa subsp. japonica GN=PRMT10 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 21  KVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC 80
           +V ++ YH+           +  N +   GK VLD+G GSGIL   S   GA   +A+E 
Sbjct: 49  RVRMDAYHS----------AVFRNAHHFRGKVVLDVGTGSGILAIWSAQAGARKVYAVEA 98

Query: 81  DKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI 125
                    ++  E    N  A + E+ + S++  V  +KVD +I
Sbjct: 99  TN-----MAEHARELARANDVADIVEVIQGSMEDVVLPEKVDVII 138

Methylates the guanidino nitrogens of arginyl residues in some proteins.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A2Y953|ANM10_ORYSI Protein arginine N-methyltransferase PRMT10 OS=Oryza sativa subsp. indica GN=PRMT10 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 21  KVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC 80
           +V ++ YH+           +  N +   GK VLD+G GSGIL   S   GA   +A+E 
Sbjct: 51  RVRMDAYHS----------AVFRNAHHFRGKVVLDVGTGSGILAIWSAQAGARKVYAVEA 100

Query: 81  DKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI 125
                    ++  E    N  A + E+ + S++  V  +KVD +I
Sbjct: 101 TN-----MAEHARELARANDVADIVEVIQGSMEDVVLPEKVDVII 140

Methylates the guanidino nitrogens of arginyl residues in some proteins.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6LJG3|PRMA_THEM4 Ribosomal protein L11 methyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=prmA PE=3 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 28  HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDI 87
           HT   LAAT+L           G  VLDLGCGSGIL+  +  LGA    A++ DK  ++ 
Sbjct: 114 HTTTKLAATLLKKYLRQ-----GMDVLDLGCGSGILSILAKKLGASGVLAVDNDKMAVES 168

Query: 88  FIDN--KNEFEI 97
            I+N  KN  E+
Sbjct: 169 AIENVEKNNVEV 180

Methylates ribosomal protein L11.

Thermosipho melanesiensis (strain BI429 / DSM 12029) (taxid: 391009)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
71895857	208	methyltransferase like 5 [Xenopus (Silur	0.935	0.971	0.535	4e-51
410896816	208	PREDICTED: methyltransferase-like protei	0.935	0.971	0.511	2e-49
395519734	224	PREDICTED: methyltransferase-like protei	0.930	0.897	0.516	2e-49
344267986	209	PREDICTED: methyltransferase-like protei	0.930	0.961	0.507	4e-49
149642929	209	methyltransferase-like protein 5 [Bos ta	0.930	0.961	0.511	4e-49
402888575	209	PREDICTED: methyltransferase-like protei	0.930	0.961	0.497	9e-49
92859575	209	methyltransferase-like protein 5 [Homo s	0.930	0.961	0.492	1e-48
74004513	209	PREDICTED: methyltransferase like 5 isof	0.930	0.961	0.497	1e-48
213513149	208	Methyltransferase-like protein 5 [Salmo	0.953	0.990	0.502	1e-48
332210380	209	PREDICTED: methyltransferase-like protei	0.930	0.961	0.492	2e-48

>gi|71895857|ref|NP_001025663.1| methyltransferase like 5 [Xenopus (Silurana) tropicalis] gi|62201896|gb|AAH92545.1| MGC107788 protein [Xenopus (Silurana) tropicalis]

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 146/209 (69%), Gaps = 7/209 (3%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
           MKLK +E  LQQ+   F NPK+ LEQY T PH+AA +L+TI N +NDI+ K V DLGCG 
Sbjct: 1   MKLKELEGCLQQVDV-FENPKLLLEQYPTRPHIAACMLYTIHNTFNDIEDKVVADLGCGC 59

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L+ G+ +LGA  C  L+ D++ LDIF  N  EFE+TN D I F+I   SL      + 
Sbjct: 60  GVLSIGAAMLGAGLCLGLDVDEDALDIFKTNTEEFELTNIDMIQFDIC--SLPPDCLSKS 117

Query: 121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISK-VVYSLHKTSTRESILKKIQAFKNVEQVD 178
           VDTVIMNPPFGT+ N G+D+ F++ A  +++  VYSLHKTSTRE I KK   + NV +++
Sbjct: 118 VDTVIMNPPFGTKHNKGMDMTFLRTALQMARNSVYSLHKTSTREHIKKKATDW-NV-KME 175

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
           +IAE++YDL  SYKFHKK   DIEVD +R
Sbjct: 176 IIAELRYDLPASYKFHKKKSVDIEVDFIR 204

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410896816|ref|XP_003961895.1| PREDICTED: methyltransferase-like protein 5-like [Takifugu rubripes]

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 142/209 (67%), Gaps = 7/209 (3%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
           MKLK +E  LQQ+   F  PK+  EQY T PH+AA +L+TIQ+ ++DI GK V DLGCG 
Sbjct: 1   MKLKELESCLQQVDV-FEEPKILFEQYPTSPHIAACMLYTIQSTFDDIKGKVVADLGCGC 59

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L+ G+ +LGA FC   + D + L+IF  N  EFEI+N D  L + +  SL    + QK
Sbjct: 60  GVLSIGAAILGAGFCVGFDIDDDALEIFRSNAEEFEISNVD--LVQSDLCSLQPEAYAQK 117

Query: 121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISK-VVYSLHKTSTRESILKKIQAFKNVEQVD 178
            DTVIMNPPFGT+ N G+D+ F++ A  +++  VYSLHKTSTRE I KK   +    +++
Sbjct: 118 FDTVIMNPPFGTKHNQGMDMKFLRTALTMAQTAVYSLHKTSTREHIQKKANDWGV--KME 175

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
           VIAE++YDL  SYKFHKK   DIEVD +R
Sbjct: 176 VIAELRYDLPASYKFHKKKSVDIEVDFIR 204

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395519734|ref|XP_003763997.1| PREDICTED: methyltransferase-like protein 5 [Sarcophilus harrisii]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/209 (51%), Positives = 147/209 (70%), Gaps = 8/209 (3%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
           MK K +E +LQQ+   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct: 1   MKRKELESFLQQVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVGDLGCGC 59

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D I  + N  SL  ++FK  
Sbjct: 60  GMLSIGTAMLGAGLCVGFDIDEDALEIFSRNVAEFELTNIDMI--QCNVCSLSDTMFKS- 116

Query: 121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVD 178
            DT+IMNPPFGT+ N G+D++F++ A  +++V VYSLHK+STRE I KK   +K   ++D
Sbjct: 117 FDTIIMNPPFGTKHNKGMDMSFLKIALQMARVAVYSLHKSSTREHIQKKADEWKI--KMD 174

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
           VIAE++YDL  SY+FHKK   DIEVDL+R
Sbjct: 175 VIAELRYDLPASYRFHKKKTVDIEVDLIR 203

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344267986|ref|XP_003405845.1| PREDICTED: methyltransferase-like protein 5-like [Loxodonta africana]

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 106/209 (50%), Positives = 146/209 (69%), Gaps = 8/209 (3%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
           +KLK +E  LQQ+   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct: 4   LKLKELESRLQQVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGC 62

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D +  +++  SL S+   + 
Sbjct: 63  GVLSIGTAMLGAGLCVGFDIDEDALEIFNRNVEEFELTNVDMVQCDVS--SL-SNRMSKS 119

Query: 121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISK-VVYSLHKTSTRESILKKIQAFKNVEQVD 178
            DTVIMNPPFGT+ N G D+AF++ A ++++  VYSLHK+STRE I KK   +K   ++D
Sbjct: 120 FDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHIQKKAAEWK--VKID 177

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
           +IAE++YDL  SYKFHKK   DIEVDL+R
Sbjct: 178 IIAELRYDLPASYKFHKKKSVDIEVDLIR 206

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149642929|ref|NP_001092605.1| methyltransferase-like protein 5 [Bos taurus] gi|148753330|gb|AAI42085.1| METTL5 protein [Bos taurus] gi|296490652|tpg|DAA32765.1| TPA: methyltransferase like 5 [Bos taurus]

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 144/209 (68%), Gaps = 8/209 (3%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
           +KLK +E  LQQ+   F  PKV LEQY T PH+AA +L+TI N Y DI+ K V DLGCG 
Sbjct: 4   LKLKELESRLQQVD-GFEKPKVLLEQYPTRPHIAACMLYTIHNTYGDIENKVVADLGCGC 62

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D +  ++   SL S+   + 
Sbjct: 63  GVLSIGTAMLGAGLCVGFDIDEDALEIFNRNVEEFELTNVDVVQCDVC--SL-SNRMSKS 119

Query: 121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISK-VVYSLHKTSTRESILKKIQAFKNVEQVD 178
            DTVIMNPPFGT+ N G D+AF++ A ++++  VYSLHK+STRE I KK   +K   ++D
Sbjct: 120 FDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHIQKKAAEWK--VKID 177

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
           +IAE++YDL  SYKFHKK   DIEVDL+R
Sbjct: 178 IIAELRYDLPASYKFHKKKSVDIEVDLIR 206

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402888575|ref|XP_003907633.1| PREDICTED: methyltransferase-like protein 5 isoform 1 [Papio anubis] gi|402888577|ref|XP_003907634.1| PREDICTED: methyltransferase-like protein 5 isoform 2 [Papio anubis]

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 104/209 (49%), Positives = 144/209 (68%), Gaps = 8/209 (3%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
           ++LK +E  LQQ+   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct: 4   LRLKELESRLQQVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGC 62

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D +  ++    L S+   + 
Sbjct: 63  GVLSIGTAMLGAGLCVGFDIDEDALEIFNRNVEEFELTNIDMVQCDV---CLLSNRMSKS 119

Query: 121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISK-VVYSLHKTSTRESILKKIQAFKNVEQVD 178
            DTVIMNPPFGT+ N G D+AF++ A ++++  VYSLHK+STRE + KK   +K   ++D
Sbjct: 120 FDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHVQKKAAEWKI--KID 177

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
           VIAE++YDL  SYKFHKK   DIEVDL+R
Sbjct: 178 VIAELRYDLPASYKFHKKKSVDIEVDLIR 206

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|92859575|ref|NP_054887.2| methyltransferase-like protein 5 [Homo sapiens] gi|332814806|ref|XP_003309373.1| PREDICTED: methyltransferase-like protein 5 isoform 1 [Pan troglodytes] gi|397507726|ref|XP_003824339.1| PREDICTED: methyltransferase-like protein 5 isoform 1 [Pan paniscus] gi|397507728|ref|XP_003824340.1| PREDICTED: methyltransferase-like protein 5 isoform 2 [Pan paniscus] gi|410035858|ref|XP_003949959.1| PREDICTED: methyltransferase-like protein 5 [Pan troglodytes] gi|426337644|ref|XP_004032809.1| PREDICTED: methyltransferase-like protein 5 isoform 1 [Gorilla gorilla gorilla] gi|426337646|ref|XP_004032810.1| PREDICTED: methyltransferase-like protein 5 isoform 2 [Gorilla gorilla gorilla] gi|74761664|sp|Q9NRN9.1|METL5_HUMAN RecName: Full=Methyltransferase-like protein 5 gi|9295180|gb|AAF86874.1|AF201938_1 DC3 [Homo sapiens] gi|12654205|gb|AAH00921.1| Methyltransferase like 5 [Homo sapiens] gi|62205251|gb|AAH93014.1| METTL5 protein [Homo sapiens] gi|62822320|gb|AAY14869.1| unknown [Homo sapiens] gi|119631659|gb|EAX11254.1| methyltransferase like 5, isoform CRA_c [Homo sapiens] gi|119631660|gb|EAX11255.1| methyltransferase like 5, isoform CRA_c [Homo sapiens] gi|307686343|dbj|BAJ21102.1| methyltransferase like 5 [synthetic construct]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/209 (49%), Positives = 144/209 (68%), Gaps = 8/209 (3%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
           ++LK +E  LQQ+   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct: 4   VRLKELESRLQQVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGC 62

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D +  ++    L S+   + 
Sbjct: 63  GVLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDV---CLLSNRMSKS 119

Query: 121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISK-VVYSLHKTSTRESILKKIQAFKNVEQVD 178
            DTVIMNPPFGT+ N G D+AF++ A ++++  VYSLHK+STRE + KK   +K   ++D
Sbjct: 120 FDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHVQKKAAEWKI--KID 177

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
           +IAE++YDL  SYKFHKK   DIEVDL+R
Sbjct: 178 IIAELRYDLPASYKFHKKKSVDIEVDLIR 206

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|74004513|ref|XP_535953.2| PREDICTED: methyltransferase like 5 isoform 2 [Canis lupus familiaris]

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/209 (49%), Positives = 146/209 (69%), Gaps = 8/209 (3%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
           +KLK +E  LQQ+   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct: 4   LKLKELESRLQQVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGC 62

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L+ G+ +LGA  C   + D++ L++F  N  EFE+TN D +  ++  +SL S+   + 
Sbjct: 63  GVLSIGTAMLGAGLCVGFDIDEDALEVFNRNVEEFELTNVDMVQCDV--RSL-SNRMSKS 119

Query: 121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISK-VVYSLHKTSTRESILKKIQAFKNVEQVD 178
            DTVIMNPPFGT+ N G D+AF++ A ++++  VYSLHK+STR+ I KK   +K   ++D
Sbjct: 120 FDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTRDHIQKKATEWKI--KID 177

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
           +IAE++YDL  SYKFHKK   DIEVDL+R
Sbjct: 178 IIAELRYDLPASYKFHKKKSVDIEVDLIR 206

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|213513149|ref|NP_001134384.1| Methyltransferase-like protein 5 [Salmo salar] gi|209732866|gb|ACI67302.1| Methyltransferase-like protein 5 [Salmo salar]

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 107/213 (50%), Positives = 143/213 (67%), Gaps = 7/213 (3%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
           MKLK +E  LQQ+   F  PK+ LEQY T PH+AA +L+TI N ++DI+GK V DLGCG 
Sbjct: 1   MKLKELESCLQQVD-AFEEPKILLEQYPTSPHIAACMLYTIHNTFDDIEGKLVADLGCGC 59

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L+ G+ +L A  C   + D + L+IF  N  EFE+TN D  L + +  SL S  + +K
Sbjct: 60  GVLSIGAAMLDAGLCVGFDIDPDALEIFKRNSEEFELTNVD--LIQCDMCSLRSHAYAKK 117

Query: 121 VDTVIMNPPFGTR-NCGIDLAFVQYAADIS-KVVYSLHKTSTRESILKKIQAFKNVEQVD 178
            DTVIMNPPFGT+ N G+D+ F++ A  ++   VYSLHKTSTR  I KK   +    +++
Sbjct: 118 FDTVIMNPPFGTKHNQGMDMQFLRTALTMATTAVYSLHKTSTRGHIQKKASDWGV--KME 175

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITS 211
           VIAE++YDL  SYKFHKK L DI+VD LR  T+
Sbjct: 176 VIAELRYDLPASYKFHKKKLVDIKVDFLRFSTT 208

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332210380|ref|XP_003254285.1| PREDICTED: methyltransferase-like protein 5 [Nomascus leucogenys]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/209 (49%), Positives = 143/209 (68%), Gaps = 8/209 (3%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
           ++LK +E  LQQ+   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct: 4   IRLKELESRLQQVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGC 62

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L  G+ +LGA  C   + D++ L+IF  N  EFE+TN D +  ++    L S+   + 
Sbjct: 63  GVLNIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDV---CLLSNRMSKS 119

Query: 121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISK-VVYSLHKTSTRESILKKIQAFKNVEQVD 178
            DTVIMNPPFGT+ N G D+AF++ A ++++  VYSLHK+STRE + KK   +K   ++D
Sbjct: 120 FDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHVQKKAAEWKI--KID 177

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
           +IAE++YDL  SYKFHKK   DIEVDL+R
Sbjct: 178 IIAELRYDLPASYKFHKKKSVDIEVDLIR 206

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
UNIPROTKB|F1N6B1	208	METTL5 "Uncharacterized protei	0.930	0.966	0.514	9.5e-50
UNIPROTKB|F1NZ60	217	METTL5 "Uncharacterized protei	0.944	0.940	0.504	3.2e-49
UNIPROTKB|E2RR00	209	METTL5 "Uncharacterized protei	0.930	0.961	0.497	1.1e-48
UNIPROTKB|Q9NRN9	209	METTL5 "Methyltransferase-like	0.930	0.961	0.492	3.7e-48
UNIPROTKB|I3LFW4	209	METTL5 "Uncharacterized protei	0.930	0.961	0.497	1.2e-47
ZFIN|ZDB-GENE-041010-21	207	mettl5 "methyltransferase like	0.930	0.971	0.497	5.4e-47
MGI|MGI:1922672	209	Mettl5 "methyltransferase like	0.930	0.961	0.492	1.4e-46
RGD|1566062	209	Mettl5 "methyltransferase like	0.930	0.961	0.497	1.4e-46
UNIPROTKB|B8ZZC8	244	METTL5 "Methyltransferase-like	0.879	0.778	0.484	7.1e-45
UNIPROTKB|B8ZZE3	198	METTL5 "Methyltransferase like	0.879	0.959	0.484	7.1e-45

UNIPROTKB|F1N6B1 METTL5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 107/208 (51%), Positives = 143/208 (68%)

Query:     1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
             +KLK +E  LQQ+   F  PKV LEQY T PH+AA +L+TI N Y DI+ K V DLGCG 
Sbjct:     4 LKLKELESRLQQVD-GFEKPKVLLEQYPTRPHIAACMLYTIHNTYGDIENKVVADLGCGC 62

Query:    61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
             G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D +  ++   SL + + K  
Sbjct:    63 GVLSIGTAMLGAGLCVGFDIDEDALEIFNRNVEEFELTNVDVVQCDVC--SLSNRMSKS- 119

Query:   121 VDTVIMNPPFGTRNCGIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVDV 179
              DTVIMNPPFGT N G D+AF++ A ++++  VYSLHK+STRE I KK   +K   ++D+
Sbjct:   120 FDTVIMNPPFGTNNKGTDMAFLKTALEMARTAVYSLHKSSTREHIQKKAAEWK--VKIDI 177

Query:   180 IAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
             IAE++YDL  SYKFHKK   DIEVDL+R
Sbjct:   178 IAELRYDLPASYKFHKKKSVDIEVDLIR 205

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1NZ60 METTL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 107/212 (50%), Positives = 146/212 (68%)

Query:     1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
             +KLK +E  LQQ+   F +PKV LEQY T PH+AA +L+TI N ++DI+ KTV DLGCG 
Sbjct:     9 LKLKELESCLQQVD-TFESPKVLLEQYPTRPHIAACMLYTIHNTFDDIENKTVADLGCGC 67

Query:    61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
             G+L+ GS +LGA  C   + D E L+IF  N  +FE+TN D +  +++  SL  S+  + 
Sbjct:    68 GMLSIGSAMLGAGLCVGFDIDAEALEIFNSNLEDFELTNVDVVQCDVS--SLPDSM-SET 124

Query:   121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVD 178
              DTVIMNPPFGT+ N G+D+ F++ A  ++K  VYSLHKTSTR+ + KK   +K   +++
Sbjct:   125 FDTVIMNPPFGTKHNKGMDMIFLKTALQMAKTAVYSLHKTSTRQHVQKKADEWK--VKME 182

Query:   179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLRIIT 210
             VIAE++YDL  SYKFHKK   DIEVD +R  T
Sbjct:   183 VIAELRYDLPASYKFHKKKSVDIEVDFIRFST 214

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E2RR00 METTL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 104/209 (49%), Positives = 146/209 (69%)

Query:     1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
             +KLK +E  LQQ+   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct:     4 LKLKELESRLQQVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGC 62

Query:    61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
             G+L+ G+ +LGA  C   + D++ L++F  N  EFE+TN D +  ++  +SL + + K  
Sbjct:    63 GVLSIGTAMLGAGLCVGFDIDEDALEVFNRNVEEFELTNVDMVQCDV--RSLSNRMSKS- 119

Query:   121 VDTVIMNPPFGTRNC-GIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVD 178
              DTVIMNPPFGT+N  G D+AF++ A ++++  VYSLHK+STR+ I KK   +K   ++D
Sbjct:   120 FDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTRDHIQKKATEWKI--KID 177

Query:   179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
             +IAE++YDL  SYKFHKK   DIEVDL+R
Sbjct:   178 IIAELRYDLPASYKFHKKKSVDIEVDLIR 206

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9NRN9 METTL5 "Methyltransferase-like protein 5" [Homo sapiens (taxid:9606)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 103/209 (49%), Positives = 144/209 (68%)

Query:     1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
             ++LK +E  LQQ+   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct:     4 VRLKELESRLQQVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGC 62

Query:    61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
             G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D +  ++    L S+   + 
Sbjct:    63 GVLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDV---CLLSNRMSKS 119

Query:   121 VDTVIMNPPFGTRNC-GIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVD 178
              DTVIMNPPFGT+N  G D+AF++ A ++++  VYSLHK+STRE + KK   +K   ++D
Sbjct:   120 FDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHVQKKAAEWKI--KID 177

Query:   179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
             +IAE++YDL  SYKFHKK   DIEVDL+R
Sbjct:   178 IIAELRYDLPASYKFHKKKSVDIEVDLIR 206

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|I3LFW4 METTL5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 104/209 (49%), Positives = 144/209 (68%)

Query:     1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
             ++LK +E  LQQ+   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct:     4 LRLKELESRLQQVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKMVADLGCGC 62

Query:    61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
             G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D +  ++   SL + + K  
Sbjct:    63 GVLSIGTAMLGAGLCVGFDIDEDALEIFNRNVEEFELTNVDMVQCDVC--SLSNKMSKS- 119

Query:   121 VDTVIMNPPFGTRNC-GIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVD 178
              DTVIMNPPFGT+N  G D+AF++ A ++++  VYSLHK+STRE I KK   +K   ++D
Sbjct:   120 FDTVIMNPPFGTKNNKGTDIAFLKTALEMARTAVYSLHKSSTREHIQKKAAEWKI--KID 177

Query:   179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
             +IAE++YDL  SY FHKK   DIEVDL+R
Sbjct:   178 IIAELRYDLPASYTFHKKKSVDIEVDLIR 206

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-041010-21 mettl5 "methyltransferase like 5" [Danio rerio (taxid:7955)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 104/209 (49%), Positives = 140/209 (66%)

Query:     1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
             MKLK +E  LQQ+   F  PK+ LEQY T PH+A  +L+TI N ++DI  K V DLGCG 
Sbjct:     1 MKLKELESCLQQVD-GFEEPKILLEQYPTSPHIAGCMLYTIHNTFDDIQNKLVADLGCGC 59

Query:    61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
             G+L+ G+ +L A  C   + D++ LDIF  N  EFE+ N D +  ++   S+ SS + +K
Sbjct:    60 GVLSIGAAVLDAGLCVGFDIDEDALDIFRGNVEEFELPNIDVVQCDVC--SIGSS-YAKK 116

Query:   121 VDTVIMNPPFGTR-NCGIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVD 178
              DTVIMNPPFGT+ N GID+ F+Q A  ++   VYSLHKTSTR+ I KK   +K   +++
Sbjct:   117 FDTVIMNPPFGTKHNQGIDMQFLQTAISMATTAVYSLHKTSTRDHIQKKANDWK--VKME 174

Query:   179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
             VIAE++YDL  SYKFHKK   DI+VD +R
Sbjct:   175 VIAELRYDLPASYKFHKKKSVDIQVDFIR 203

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

MGI|MGI:1922672 Mettl5 "methyltransferase like 5" [Mus musculus (taxid:10090)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 103/209 (49%), Positives = 142/209 (67%)

Query:     1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
             +KLK +E  LQ++   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct:     4 LKLKELESRLQEVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKAVADLGCGC 62

Query:    61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
             G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D I  ++   SL + + K  
Sbjct:    63 GVLSIGAAMLGAGLCVGFDIDEDALEIFNKNVEEFELTNVDMIQCDVY--SLSNRMSKL- 119

Query:   121 VDTVIMNPPFGTRNC-GIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVD 178
              DTVIMNPPFGT+N  G D+AF++ A  +++  VYSLHK+STRE I KK   +K   +++
Sbjct:   120 FDTVIMNPPFGTKNNKGTDMAFLKTALGMARTAVYSLHKSSTREHIQKKAAEWK--VKIE 177

Query:   179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
             +IAE++YDL   Y FHKK   DIEVDL+R
Sbjct:   178 IIAELRYDLPALYNFHKKKSVDIEVDLIR 206

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

RGD|1566062 Mettl5 "methyltransferase like 5" [Rattus norvegicus (taxid:10116)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 104/209 (49%), Positives = 141/209 (67%)

Query:     1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
             +KLK +E  LQ++   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct:     4 LKLKELESRLQEVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIESKAVADLGCGC 62

Query:    61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
             G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D I  ++   SL S + K  
Sbjct:    63 GVLSIGAAMLGAGLCVGFDIDEDALEIFNKNVEEFELTNVDMIQCDVY--SLSSRMSKL- 119

Query:   121 VDTVIMNPPFGTRNC-GIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVD 178
              DTVIMNPPFGT+N  G D+AF++ A  +++  VYSLHK+STRE I KK   +K   + +
Sbjct:   120 FDTVIMNPPFGTKNNKGTDMAFLKTALGMARTAVYSLHKSSTREHIQKKAAEWK--VKTE 177

Query:   179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207
             +IAE++YDL   Y FHKK   DIEVDL+R
Sbjct:   178 IIAELRYDLPALYNFHKKKSVDIEVDLIR 206

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|B8ZZC8 METTL5 "Methyltransferase-like protein 5" [Homo sapiens (taxid:9606)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 96/198 (48%), Positives = 136/198 (68%)

Query:     1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
             ++LK +E  LQQ+   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct:     4 VRLKELESRLQQVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGC 62

Query:    61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
             G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D +  ++    L S+   + 
Sbjct:    63 GVLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDV---CLLSNRMSKS 119

Query:   121 VDTVIMNPPFGTRNC-GIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVD 178
              DTVIMNPPFGT+N  G D+AF++ A ++++  VYSLHK+STRE + KK   +K   ++D
Sbjct:   120 FDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHVQKKAAEWKI--KID 177

Query:   179 VIAEMKYDLNQSYKFHKK 196
             +IAE++YDL  SYKFHKK
Sbjct:   178 IIAELRYDLPASYKFHKK 195

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|B8ZZE3 METTL5 "Methyltransferase like 5, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 96/198 (48%), Positives = 136/198 (68%)

Query:     1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
             ++LK +E  LQQ+   F  PK+ LEQY T PH+AA +L+TI N Y+DI+ K V DLGCG 
Sbjct:     4 VRLKELESRLQQVD-GFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGC 62

Query:    61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
             G+L+ G+ +LGA  C   + D++ L+IF  N  EFE+TN D +  ++    L S+   + 
Sbjct:    63 GVLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDV---CLLSNRMSKS 119

Query:   121 VDTVIMNPPFGTRNC-GIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVD 178
              DTVIMNPPFGT+N  G D+AF++ A ++++  VYSLHK+STRE + KK   +K   ++D
Sbjct:   120 FDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHVQKKAAEWKI--KID 177

Query:   179 VIAEMKYDLNQSYKFHKK 196
             +IAE++YDL  SYKFHKK
Sbjct:   178 IIAELRYDLPASYKFHKK 195

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q57732	Y284_METJA	No assigned EC number	0.3148	0.9166	0.9041	yes	N/A
Q9NRN9	METL5_HUMAN	2, ., 1, ., 1, ., -	0.4928	0.9305	0.9617	yes	N/A
Q8K1A0	METL5_MOUSE	2, ., 1, ., 1, ., -	0.4928	0.9305	0.9617	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	216
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	3e-59
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	5e-08
TIGR00095	190	TIGR00095, TIGR00095, RNA methyltransferase, RsmD	7e-07
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	1e-06
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-06
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	3e-06
pfam03602	183	pfam03602, Cons_hypoth95, Conserved hypothetical p	3e-06
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	5e-06
COG0742	187	COG0742, COG0742, N6-adenine-specific methylase [D	3e-05
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	3e-05
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	9e-05
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	3e-04
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	4e-04
COG2813	300	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans	0.003

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score =  184 bits (469), Expect = 3e-59
 Identities = 83/205 (40%), Positives = 113/205 (55%), Gaps = 12/205 (5%)

Query: 4   KHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGIL 63
           K +E  L++L   F NPK+ LEQY TP  LAA IL        D++GKTVLDLG G+GIL
Sbjct: 2   KELEILLEKLK-GFPNPKLGLEQYRTPAPLAAYILWVAYLR-GDLEGKTVLDLGAGTGIL 59

Query: 64  TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT 123
             G+ LLGA    A++ D E L+I   N  E        + F +     D S F+ K DT
Sbjct: 60  AIGAALLGASRVLAVDIDPEALEIARANAEELL----GDVEFVVA----DVSDFRGKFDT 111

Query: 124 VIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM 183
           VIMNPPFG++    D  F+  A +IS VVYS+HK  +R+ + K          V  I   
Sbjct: 112 VIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFAAD--LGGTVTHIERA 169

Query: 184 KYDLNQSYKFHKKSLHDIEVDLLRI 208
           ++ + ++Y FH+K +  IEVD+ R 
Sbjct: 170 RFPIPRTYPFHRKRVRRIEVDIFRF 194

Length = 198

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 50  GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE 109
           G+TVLD+GCGSGIL   ++ LGA     ++ D   +    +N    E+   +A L    E
Sbjct: 161 GETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKEN---AELNGVEAQL----E 213

Query: 110 KSLDSSVFKQKVDTVIMN 127
             L   + + K D V+ N
Sbjct: 214 VYLPGDLPEGKADVVVAN 231

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|188022 TIGR00095, TIGR00095, RNA methyltransferase, RsmD family

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 47  DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE 106
           DI G   LDL  GSG L   ++  GA     +E D+++     +N +  + +   A +  
Sbjct: 48  DIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDRKVAQTLKENLSTLKKSGEQATVLN 107

Query: 107 INEKSLDSSVFKQ-KVDTVIMNPPFGTRN 134
              ++L     KQ   D + ++PPF    
Sbjct: 108 DAVRALLFLAKKQTPFDIIYLDPPFNRGL 136

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases [Protein synthesis, tRNA and rRNA base modification]. Length = 190

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 24/91 (26%), Positives = 31/91 (34%), Gaps = 15/91 (16%)

Query: 50  GKTVLDLGCGSG-ILTFGSILLGADFCFALECDKEILDI------FIDNKNEFEITNCDA 102
           G  VLD G GSG  L   +          +E D E   +               +   DA
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 103 ILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133
              E+ E    S       D V+ NPP+G R
Sbjct: 61  --RELLELPDGS------FDLVLGNPPYGPR 83

This family contains methyltransferase domains. Length = 117

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 52  TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS 111
            VLDLGCG+G L              ++     L++           N + +  +  E  
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60

Query: 112 LDSSVFKQKVDTVIMNPPF 130
            ++    +  D +I +PP 
Sbjct: 61  PEA---DESFDVIISDPPL 76

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 16/90 (17%)

Query: 47  DIDGKTVLDLGCGSGILTFGSILLGADFC------FALECDKEILDIFIDNKNEFEITNC 100
           D  G  VL++G GSGI+   +   G          +A+EC K    +     N  E+   
Sbjct: 21  DKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRS 80

Query: 101 DAILFEINEKSLDSSVFKQKVDTVIMNPPF 130
           D  LFE             K D ++ NPP+
Sbjct: 81  D--LFE--------PFRGDKFDVILFNPPY 100

Length = 188

>gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 44  NYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAI 103
            Y +I G  VLDL  GSG L   ++  GA     +E DK+ +    +N     +    A+
Sbjct: 38  PYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVEKDKKAVATLKENLEALGLEGETAV 97

Query: 104 LFEINEKSLDSSVFKQKV-DTVIMNPPFGTRNCGIDLAFV 142
           L     ++L     K    D V ++PP+        L  +
Sbjct: 98  LRNDAARALLRLAGKGPPFDLVFLDPPYAKGLIEEALELL 137

Length = 183

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 45.5 bits (109), Expect = 5e-06
 Identities = 16/27 (59%), Positives = 19/27 (70%)

Query: 46  NDIDGKTVLDLGCGSGILTFGSILLGA 72
             + GKTVLD+GCGSGIL   +  LGA
Sbjct: 116 LVLPGKTVLDVGCGSGILAIAAAKLGA 142

Length = 250

>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 12/91 (13%)

Query: 47  DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNK------NEFEITNC 100
           +I+G  VLDL  GSG L   ++  GA     +E D++ + I  +N        E  +   
Sbjct: 41  EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN 100

Query: 101 DAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131
           DA+        L     ++  D V ++PP+ 
Sbjct: 101 DALRA------LKQLGTREPFDLVFLDPPYA 125

Length = 187

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 50  GKTVLDLGCGSGILTFGSILLGADFCFALECD 81
           GKTVLD+GCGSGIL   +  LGA     ++ D
Sbjct: 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDID 194

Length = 300

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 47  DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE 106
           D+  K V+D+GCGSGIL+  ++ LGA     ++ D   ++    N    E+      L  
Sbjct: 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKN---AELNQVSDRLQV 213

Query: 107 INEKSLDSSVFKQKVDTVIMN 127
                      + K D ++ N
Sbjct: 214 KLIYLEQPI--EGKADVIVAN 232

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGAD 73
          I  TI+ N   + G  VLD+GCG G+L+     LGA+
Sbjct: 33 IRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGAN 69

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 41/152 (26%), Positives = 56/152 (36%), Gaps = 40/152 (26%)

Query: 46  NDIDGKTVLDLGCGSGILTFGSILLGA-------DFC----FALECDKEILDIFIDNKNE 94
             + GK VLDLGCG G+L      L                 ALE  +  L       N 
Sbjct: 29  KPLGGK-VLDLGCGYGVL---GAALAKRSPDLEVTMVDINARALESARANL-----AANG 79

Query: 95  FEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF---GTRNCGIDLAFVQYAADISK- 150
            E         E+    L S+V   K D +I NPPF      +  +   F+  AA   K 
Sbjct: 80  LENG-------EVFWSDLYSAVEPGKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKP 132

Query: 151 -----VVYSLHKTSTRESILKKIQAFKNVEQV 177
                +V + H      S+L++   F NVE +
Sbjct: 133 GGELWIVANRHLGY--PSLLEE--LFGNVEVL 160

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 25/97 (25%)

Query: 44  NYNDIDGKTVLDLGCGSGILTFGSILL------GADFC----FALECDKEILDIFIDNKN 93
                 G  VLDLGCG G+L  G +L                 A+E  ++ L     N  
Sbjct: 153 TLPPDLGGKVLDLGCGYGVL--GLVLAKKSPQAKLTLVDVNARAVESARKNL---AANGV 207

Query: 94  EFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF 130
           E      +  ++  N   L   V   K D +I NPPF
Sbjct: 208 E------NTEVWASN---LYEPVEG-KFDLIISNPPF 234

Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	100.0
KOG3420|consensus	185		99.98
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.79
COG4123	248	Predicted O-methyltransferase [General function pr	99.78
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.77
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.76
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.75
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.75
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.73
COG2890	280	HemK Methylase of polypeptide chain release factor	99.72
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.71
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.71
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.71
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.71
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.7
PHA03412	241	putative methyltransferase; Provisional	99.7
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.69
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.68
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.67
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.66
PRK14967	223	putative methyltransferase; Provisional	99.65
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.65
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.65
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.65
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.65
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.65
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.65
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.64
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.64
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.63
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.62
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.62
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.6
PHA03411	279	putative methyltransferase; Provisional	99.6
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.59
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.59
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.58
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.58
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.58
PRK11207	197	tellurite resistance protein TehB; Provisional	99.57
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.57
PLN02672	1082	methionine S-methyltransferase	99.56
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.56
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.56
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.56
PRK14968	188	putative methyltransferase; Provisional	99.55
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.54
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.54
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.53
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.53
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	99.52
PLN02244	340	tocopherol O-methyltransferase	99.52
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.52
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.52
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.51
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.51
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.51
KOG2904|consensus	328		99.51
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.5
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.5
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.5
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.5
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.5
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.49
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.49
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.48
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.47
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.47
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.47
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.47
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.47
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.47
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	99.46
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.46
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.46
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.46
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.45
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.45
KOG1271|consensus	227		99.45
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.45
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.44
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.44
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.44
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.44
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.44
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.43
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.43
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.43
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.43
PRK12335	287	tellurite resistance protein TehB; Provisional	99.42
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.42
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.42
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.42
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.42
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.41
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.41
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.41
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	99.4
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.4
PLN03075	296	nicotianamine synthase; Provisional	99.4
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.39
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.39
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.39
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.39
PRK07402	196	precorrin-6B methylase; Provisional	99.38
PRK06922	677	hypothetical protein; Provisional	99.38
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.38
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.38
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.38
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.37
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.36
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.35
PLN02336	475	phosphoethanolamine N-methyltransferase	99.35
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.34
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.34
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.33
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.31
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	99.31
KOG1270|consensus	282		99.3
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.3
PLN02490	340	MPBQ/MSBQ methyltransferase	99.3
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.29
KOG3191|consensus	209		99.29
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.28
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.27
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.27
PRK04266	226	fibrillarin; Provisional	99.27
KOG1499|consensus	346		99.26
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.26
PRK05785	226	hypothetical protein; Provisional	99.25
PRK08317	241	hypothetical protein; Provisional	99.25
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.25
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.25
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.25
PLN02336	475	phosphoethanolamine N-methyltransferase	99.24
KOG1540|consensus	296		99.24
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.23
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.23
PRK00811	283	spermidine synthase; Provisional	99.23
KOG4300|consensus	252		99.23
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.22
KOG2671|consensus	421		99.22
COG2521	287	Predicted archaeal methyltransferase [General func	99.22
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.21
PRK04457	262	spermidine synthase; Provisional	99.21
PRK10742	250	putative methyltransferase; Provisional	99.21
COG2520	341	Predicted methyltransferase [General function pred	99.2
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.2
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.19
PLN02476	278	O-methyltransferase	99.19
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.18
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.17
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.17
KOG2187|consensus	534		99.17
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.16
PRK06202	232	hypothetical protein; Provisional	99.16
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.15
KOG1500|consensus	517		99.15
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.15
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.14
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.14
KOG0820|consensus	315		99.14
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.14
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	99.13
PLN02366	308	spermidine synthase	99.13
PRK03612	521	spermidine synthase; Provisional	99.13
PRK01581	374	speE spermidine synthase; Validated	99.13
TIGR03438	301	probable methyltransferase. This model represents	99.12
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.12
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.1
KOG2730|consensus	263		99.08
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.07
PTZ00146	293	fibrillarin; Provisional	99.07
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.06
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.04
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.02
COG4122	219	Predicted O-methyltransferase [General function pr	99.02
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	99.02
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.02
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.01
KOG1541|consensus	270		98.97
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.95
TIGR00438	188	rrmJ cell division protein FtsJ.	98.95
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.92
PLN02823	336	spermine synthase	98.91
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.91
PRK04148	134	hypothetical protein; Provisional	98.89
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.89
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.88
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.86
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.84
COG4076	252	Predicted RNA methylase [General function predicti	98.82
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.82
COG0286	489	HsdM Type I restriction-modification system methyl	98.82
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.81
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.81
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.81
KOG3010|consensus	261		98.78
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.75
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.74
KOG1975|consensus	389		98.74
KOG2915|consensus	314		98.73
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.7
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.68
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.67
KOG2899|consensus	288		98.66
KOG2361|consensus	264		98.64
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.63
PRK00536	262	speE spermidine synthase; Provisional	98.62
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.57
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.57
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	98.54
COG1568	354	Predicted methyltransferases [General function pre	98.54
KOG1663|consensus	237		98.52
COG3129	292	Predicted SAM-dependent methyltransferase [General	98.45
COG3897	218	Predicted methyltransferase [General function pred	98.42
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.39
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.38
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	98.37
KOG1661|consensus	237		98.36
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.34
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.32
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.32
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.3
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.29
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.29
KOG1122|consensus	460		98.29
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.28
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.24
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.2
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.2
PF13679	141	Methyltransf_32: Methyltransferase domain	98.19
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.18
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.15
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.11
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.11
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.05
PRK11524	284	putative methyltransferase; Provisional	98.04
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.04
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	98.04
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.04
TIGR00497	501	hsdM type I restriction system adenine methylase (	98.01
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.97
PRK13699	227	putative methylase; Provisional	97.89
PHA01634	156	hypothetical protein	97.88
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.88
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.87
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.84
KOG3045|consensus	325		97.81
KOG2940|consensus	325		97.68
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.66
KOG1709|consensus	271		97.65
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.62
KOG3201|consensus	201		97.62
KOG2198|consensus	375		97.59
KOG1501|consensus	636		97.59
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.57
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.53
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.51
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	97.45
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.44
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.41
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.25
KOG4589|consensus	232		97.14
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	97.08
PRK10458	467	DNA cytosine methylase; Provisional	97.07
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.03
KOG3987|consensus	288		97.01
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.98
KOG2912|consensus	419		96.98
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	96.97
KOG1227|consensus	351		96.94
KOG1269|consensus	364		96.94
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.8
KOG3178|consensus	342		96.77
KOG2078|consensus	495		96.76
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.68
KOG4058|consensus	199		96.57
KOG0822|consensus	649		96.56
KOG2798|consensus	369		96.42
PRK11524	284	putative methyltransferase; Provisional	96.37
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.29
KOG0821|consensus	326		96.24
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.22
KOG2793|consensus	248		96.21
KOG2352|consensus	482		96.07
KOG1331|consensus	293		95.99
KOG3115|consensus	249		95.77
COG0863	302	DNA modification methylase [DNA replication, recom	95.71
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	95.52
KOG1201|consensus	300		95.47
KOG1562|consensus	337		95.43
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	95.32
KOG2360|consensus	413		95.28
PRK13699	227	putative methylase; Provisional	95.22
KOG1253|consensus	525		95.16
KOG2920|consensus	282		95.14
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	95.08
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	94.61
COG1565	370	Uncharacterized conserved protein [Function unknow	94.57
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	94.55
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	94.23
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	94.06
PTZ00357	1072	methyltransferase; Provisional	94.03
KOG2651|consensus	476		93.82
COG4798	238	Predicted methyltransferase [General function pred	93.45
KOG1099|consensus	294		92.98
KOG1596|consensus	317		92.87
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	92.8
KOG0024|consensus	354		92.55
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.53
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	92.53
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	92.36
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	91.56
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	91.4
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	91.03
PRK12548	289	shikimate 5-dehydrogenase; Provisional	90.65
KOG3924|consensus	419		90.2
PRK05867	253	short chain dehydrogenase; Provisional	90.02
COG2961	279	ComJ Protein involved in catabolism of external DN	90.02
PRK07904	253	short chain dehydrogenase; Provisional	90.01
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	89.65
PRK08339	263	short chain dehydrogenase; Provisional	89.62
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	89.26
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	88.96
PRK05876	275	short chain dehydrogenase; Provisional	88.93
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	88.68
PRK05866	293	short chain dehydrogenase; Provisional	88.26
PRK07097	265	gluconate 5-dehydrogenase; Provisional	88.04
PRK06139	330	short chain dehydrogenase; Provisional	88.01
PRK06194	287	hypothetical protein; Provisional	87.77
PRK07063	260	short chain dehydrogenase; Provisional	87.4
COG1743	875	Adenine-specific DNA methylase containing a Zn-rib	87.07
PRK05854	313	short chain dehydrogenase; Provisional	86.89
PRK09291	257	short chain dehydrogenase; Provisional	86.74
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	86.74
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	86.64
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	86.53
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	86.29
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	86.02
PRK07478	254	short chain dehydrogenase; Provisional	85.98
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	85.91
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	85.4
PRK03659	601	glutathione-regulated potassium-efflux system prot	85.33
KOG0022|consensus	375		85.17
PRK08643	256	acetoin reductase; Validated	84.95
KOG0725|consensus	270		84.87
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	84.76
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	84.67
PRK08277	278	D-mannonate oxidoreductase; Provisional	84.56
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	83.9
PRK07102	243	short chain dehydrogenase; Provisional	83.77
PRK09072	263	short chain dehydrogenase; Provisional	83.76
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	83.59
COG1255	129	Uncharacterized protein conserved in archaea [Func	83.49
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	83.27
PRK06197	306	short chain dehydrogenase; Provisional	83.24
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	83.14
PRK03562	621	glutathione-regulated potassium-efflux system prot	82.71
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	82.43
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	82.39
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	82.27
PRK08340	259	glucose-1-dehydrogenase; Provisional	82.1
PRK06949	258	short chain dehydrogenase; Provisional	81.81
PRK07831	262	short chain dehydrogenase; Provisional	81.79
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	81.68
PRK07576	264	short chain dehydrogenase; Provisional	81.62
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	81.48
PRK05650	270	short chain dehydrogenase; Provisional	81.4
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.33
KOG1205|consensus	282		81.27
PLN02253	280	xanthoxin dehydrogenase	81.23
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	81.15
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	81.14
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.97
PRK09496	453	trkA potassium transporter peripheral membrane com	80.91
PRK10669	558	putative cation:proton antiport protein; Provision	80.85
PRK06138	252	short chain dehydrogenase; Provisional	80.85
PRK06172	253	short chain dehydrogenase; Provisional	80.71
KOG2782|consensus	303		80.38
PRK06124	256	gluconate 5-dehydrogenase; Provisional	80.29
COG0569	225	TrkA K+ transport systems, NAD-binding component [	80.21
PRK07791	286	short chain dehydrogenase; Provisional	80.12
PRK05872	296	short chain dehydrogenase; Provisional	80.08

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.9e-33  Score=209.46  Aligned_cols=197  Identities=40%  Similarity=0.640  Sum_probs=179.0

Q ss_pred             HHHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChH
Q psy17460          4 KHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKE   83 (216)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~   83 (216)
                      +.++..++++ ..|++|+..++||.||..++..+++.+... .+..|+.|+|+|||||.+++.++..|+..|+|+|+|++
T Consensus         2 k~Le~~l~kl-~~f~~p~~~LEQY~Tp~~~Aa~il~~a~~~-g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~   79 (198)
T COG2263           2 KELEILLEKL-KGFPNPKLGLEQYRTPAPLAAYILWVAYLR-GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE   79 (198)
T ss_pred             chhhhhhhhh-cCCCCCCccceecCCChHHHHHHHHHHHHc-CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH
Confidence            5678889999 999999999999999999999999988743 67889999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHH
Q psy17460         84 ILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRES  163 (216)
Q Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~  163 (216)
                      +++.++.|.....- +++++.+|+  .++.     ..+|.+++||||+...+++|..|+.++++....+|+++...+.+.
T Consensus        80 a~ei~r~N~~~l~g-~v~f~~~dv--~~~~-----~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f  151 (198)
T COG2263          80 ALEIARANAEELLG-DVEFVVADV--SDFR-----GKFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDF  151 (198)
T ss_pred             HHHHHHHHHHhhCC-ceEEEEcch--hhcC-----CccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHH
Confidence            99999999988443 799999999  6665     689999999999999888999999999999999999999999999


Q ss_pred             HHHHHHHhcCccceeeeeeeecCCCccccccccccceEEEEEEEEeecc
Q psy17460        164 ILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITSD  212 (216)
Q Consensus       164 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  212 (216)
                      +.+.+... +. ..+..++..+..+..|.||+++...+.++++|+.|.|
T Consensus       152 ~~~~~~~~-G~-~v~~~~~~~~~iP~~y~fH~k~~~~I~v~i~r~~k~~  198 (198)
T COG2263         152 VEKFAADL-GG-TVTHIERARFPIPRTYPFHRKRVRRIEVDIFRFEKGG  198 (198)
T ss_pred             HHHHHHhc-CC-eEEEEEEEEEecCccCchhhheeeeeeEEEEEEEecC
Confidence            98888876 43 4566678889999999999999999999999999875

>KOG3420|consensus

Probab=99.98  E-value=3.9e-32  Score=195.29  Aligned_cols=185  Identities=45%  Similarity=0.732  Sum_probs=170.4

Q ss_pred             CchHHHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeC
Q psy17460          1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC   80 (216)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~   80 (216)
                      |..|.++..++++ ++|..|+..++||+|+.+++..|+..+-...+++.|++++|+|||.|-+++.++..++..|+|+||
T Consensus         1 m~~Kel~~~L~~v-~gFeKpk~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDI   79 (185)
T KOG3420|consen    1 MRLKELESRLQQV-DGFEKPKLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDI   79 (185)
T ss_pred             CchHHHHHHHHHh-ccccccchhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeec
Confidence            6789999999999 999999999999999999999999999998889999999999999999998888877889999999


Q ss_pred             ChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcc
Q psy17460         81 DKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTST  160 (216)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~  160 (216)
                      +|++++.+.+|+....+ +++++++|+  .+..+..  +.||.++.||||+...+++|.++++.+++..+.+|+++..++
T Consensus        80 dpeALEIf~rNaeEfEv-qidlLqcdi--ldle~~~--g~fDtaviNppFGTk~~~aDm~fv~~al~~~~~VySLHKtST  154 (185)
T KOG3420|consen   80 DPEALEIFTRNAEEFEV-QIDLLQCDI--LDLELKG--GIFDTAVINPPFGTKKKGADMEFVSAALKVASAVYSLHKTST  154 (185)
T ss_pred             CHHHHHHHhhchHHhhh-hhheeeeec--cchhccC--CeEeeEEecCCCCcccccccHHHHHHHHHHHHHHHHHhcccH
Confidence            99999999999999888 889999999  7766544  789999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHHHhcCccceeeeeeeecCCCccccccccccceEEEEEEEEeec
Q psy17460        161 RESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITS  211 (216)
Q Consensus       161 ~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  211 (216)
                      ++.+++                    .+..+.||+++..++.|++||+.++
T Consensus       155 Rey~~k--------------------LP~~ykFHK~k~vdiaVDlirfe~r  185 (185)
T KOG3420|consen  155 REYRYK--------------------LPKLYKFHKRKEVDIAVDLIRFEPR  185 (185)
T ss_pred             HHHHHh--------------------cchhhhhhhccccceeeeEEEeecC
Confidence            888764                    4566789999999999999999864

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.79  E-value=1.2e-18  Score=134.37  Aligned_cols=154  Identities=18%  Similarity=0.298  Sum_probs=113.0

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEE
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDA  102 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~  102 (216)
                      ....||+..+++.+.+.+...  ..+|.++||++||||.++++++.+|+.+|+.||.|+.++..+++|++..+.. ++++
T Consensus        19 ~~~RPT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v   96 (183)
T PF03602_consen   19 DNTRPTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRV   96 (183)
T ss_dssp             -TS-SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEE
T ss_pred             CCcCCCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceee
Confidence            567899999999999999864  1479999999999999999999999999999999999999999999999887 4999


Q ss_pred             EEeccccccccccc--ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHH--HHhcCcccee
Q psy17460        103 ILFEINEKSLDSSV--FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKI--QAFKNVEQVD  178 (216)
Q Consensus       103 ~~~d~~~~~~~~~~--~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~--~~~l~~~~g~  178 (216)
                      +.+|+  .......  ...+||+||+||||....      ++..                   ++...  ..||++ +|.
T Consensus        97 ~~~d~--~~~l~~~~~~~~~fDiIflDPPY~~~~------~~~~-------------------~l~~l~~~~~l~~-~~~  148 (183)
T PF03602_consen   97 IKGDA--FKFLLKLAKKGEKFDIIFLDPPYAKGL------YYEE-------------------LLELLAENNLLNE-DGL  148 (183)
T ss_dssp             EESSH--HHHHHHHHHCTS-EEEEEE--STTSCH------HHHH-------------------HHHHHHHTTSEEE-EEE
T ss_pred             eccCH--HHHHHhhcccCCCceEEEECCCcccch------HHHH-------------------HHHHHHHCCCCCC-CEE
Confidence            99998  6554322  347999999999997540      0122                   22222  478999 999


Q ss_pred             eeeeeecC--C---Cccc-cccccccceEEEEEEE
Q psy17460        179 VIAEMKYD--L---NQSY-KFHKKSLHDIEVDLLR  207 (216)
Q Consensus       179 ~~~~~~~~--~---~~~~-~~~~~~~~~~~~~~~r  207 (216)
                      +++|+...  .   ...| ....++++++.+.+++
T Consensus       149 ii~E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~  183 (183)
T PF03602_consen  149 IIIEHSKKEDLPESPGNWELIKERKYGDTKLSFYQ  183 (183)
T ss_dssp             EEEEEETTSSS-SEETTEEEEEEEEETTEEEEEEE
T ss_pred             EEEEecCCCCCccCCCCEEEEEEecCCCEEEEEEC
Confidence            99999744  1   2334 5566678888888775

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.78  E-value=1.1e-17  Score=133.20  Aligned_cols=155  Identities=15%  Similarity=0.121  Sum_probs=109.6

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ...+|||+|||+|.+++.++++. ..+++|||+++++.+.|++|++.+++. +++++++|+  .++.......+||+|+|
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di--~~~~~~~~~~~fD~Ii~  121 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI--KEFLKALVFASFDLIIC  121 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhH--HHhhhcccccccCEEEe
Confidence            46799999999999999999984 389999999999999999999999887 799999999  67655443367999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCC---------------Cccc
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDL---------------NQSY  191 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~---------------~~~~  191 (216)
                      ||||.......   -........+    +-...+.+.+++.+...|++ +|.+.+.+....               ....
T Consensus       122 NPPyf~~~~~~---~~~~~~~~Ar----~e~~~~le~~i~~a~~~lk~-~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~  193 (248)
T COG4123         122 NPPYFKQGSRL---NENPLRAIAR----HEITLDLEDLIRAAAKLLKP-GGRLAFVHRPERLAEIIELLKSYNLEPKRIQ  193 (248)
T ss_pred             CCCCCCCcccc---CcChhhhhhh----hhhcCCHHHHHHHHHHHccC-CCEEEEEecHHHHHHHHHHHHhcCCCceEEE
Confidence            99999762210   0000111111    11122467788888888888 888777555322               2222


Q ss_pred             cccccccceEEEEEEEEeeccC
Q psy17460        192 KFHKKSLHDIEVDLLRIITSDY  213 (216)
Q Consensus       192 ~~~~~~~~~~~~~~~r~~~~~~  213 (216)
                      ..+.+..+.++..+++..+.|.
T Consensus       194 ~V~p~~~k~A~~vLv~~~k~~~  215 (248)
T COG4123         194 FVYPKIGKAANRVLVEAIKGGK  215 (248)
T ss_pred             EecCCCCCcceEEEEEEecCCC
Confidence            4455555666666777666654

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.77  E-value=1.6e-17  Score=129.59  Aligned_cols=153  Identities=16%  Similarity=0.160  Sum_probs=113.5

Q ss_pred             cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEe
Q psy17460         26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF  105 (216)
Q Consensus        26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~  105 (216)
                      ..++.+.+.+.+++.+...   .++.+|||+|||+|.++++++.+++.+|+++|+++.+++.+++|++.+++++++++.+
T Consensus        33 ~Rp~~d~v~e~l~~~l~~~---~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~  109 (199)
T PRK10909         33 LRPTTDRVRETLFNWLAPV---IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNT  109 (199)
T ss_pred             cCcCCHHHHHHHHHHHhhh---cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            4677788888888877542   3578999999999999998777767899999999999999999999998878999999


Q ss_pred             cccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      |+  .+.... ..++||+|++||||..-       +...++....                 ..+|+.+ ++.+++++..
T Consensus       110 D~--~~~l~~-~~~~fDlV~~DPPy~~g-------~~~~~l~~l~-----------------~~~~l~~-~~iv~ve~~~  161 (199)
T PRK10909        110 NA--LSFLAQ-PGTPHNVVFVDPPFRKG-------LLEETINLLE-----------------DNGWLAD-EALIYVESEV  161 (199)
T ss_pred             hH--HHHHhh-cCCCceEEEECCCCCCC-------hHHHHHHHHH-----------------HCCCcCC-CcEEEEEecC
Confidence            99  664322 12579999999998532       2222222111                 2346788 8888888764


Q ss_pred             C----C-Cccc-cccccccceEEEEEEEEe
Q psy17460        186 D----L-NQSY-KFHKKSLHDIEVDLLRII  209 (216)
Q Consensus       186 ~----~-~~~~-~~~~~~~~~~~~~~~r~~  209 (216)
                      .    . ...| ....++++.+.+.+++.+
T Consensus       162 ~~~~~~~~~~~~~~~~k~yG~s~~~~~~~~  191 (199)
T PRK10909        162 ENGLPTVPANWQLHREKVAGQVAYRLYIRE  191 (199)
T ss_pred             CCCcccCCCccEEEEEecCCCEEEEEEEEC
Confidence            2    1 2234 567778888999888753

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.76  E-value=2.5e-17  Score=125.97  Aligned_cols=125  Identities=19%  Similarity=0.348  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS  111 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  111 (216)
                      -.+.+++.+...    ++.+|||+|||+|.+++.+++.++ .+|+++|+++++++.++.|+..+++++++++.+|+  .+
T Consensus        19 ~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~--~~   92 (170)
T PF05175_consen   19 GTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDL--FE   92 (170)
T ss_dssp             HHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST--TT
T ss_pred             HHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccc--cc
Confidence            334555656553    677999999999999999999877 48999999999999999999999986699999999  77


Q ss_pred             cccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCC
Q psy17460        112 LDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDL  187 (216)
Q Consensus       112 ~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  187 (216)
                      ....   ++||+|++|||++.-..  +      .            ......+++.+.++|+| +|.+++......
T Consensus        93 ~~~~---~~fD~Iv~NPP~~~~~~--~------~------------~~~~~~~i~~a~~~Lk~-~G~l~lv~~~~~  144 (170)
T PF05175_consen   93 ALPD---GKFDLIVSNPPFHAGGD--D------G------------LDLLRDFIEQARRYLKP-GGRLFLVINSHL  144 (170)
T ss_dssp             TCCT---TCEEEEEE---SBTTSH--C------H------------HHHHHHHHHHHHHHEEE-EEEEEEEEETTS
T ss_pred             cccc---cceeEEEEccchhcccc--c------c------------hhhHHHHHHHHHHhccC-CCEEEEEeecCC
Confidence            6543   79999999999864310  0      0            01235677788999999 998877555443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.75  E-value=4e-17  Score=125.95  Aligned_cols=153  Identities=14%  Similarity=0.207  Sum_probs=105.4

Q ss_pred             HHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChH
Q psy17460          5 HIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKE   83 (216)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~   83 (216)
                      .....++++     +++.++.+..++...++.........+...++.+|||+|||+|.+++.++..++ .+|+|+|+|++
T Consensus         3 ~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~   77 (181)
T TIGR00138         3 AYLELLQKW-----NKRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHK   77 (181)
T ss_pred             HHHHHHHHH-----hhcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHH
Confidence            456678888     889999999987776554443332222335688999999999999998887654 68999999999


Q ss_pred             HHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHH
Q psy17460         84 ILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRES  163 (216)
Q Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~  163 (216)
                      +++.++.+++.+++++++++.+|+  .++...   ++||+|+++. ++..  ..-.+...+.+++++.++..+......+
T Consensus        78 ~~~~a~~~~~~~~~~~i~~i~~d~--~~~~~~---~~fD~I~s~~-~~~~--~~~~~~~~~~LkpgG~lvi~~~~~~~~~  149 (181)
T TIGR00138        78 KVAFLREVKAELGLNNVEIVNGRA--EDFQHE---EQFDVITSRA-LASL--NVLLELTLNLLKVGGYFLAYKGKKYLDE  149 (181)
T ss_pred             HHHHHHHHHHHhCCCCeEEEecch--hhcccc---CCccEEEehh-hhCH--HHHHHHHHHhcCCCCEEEEEcCCCcHHH
Confidence            999999999888887899999999  665432   6999999986 3321  1112223344444444444444444444


Q ss_pred             HHHHHHH
Q psy17460        164 ILKKIQA  170 (216)
Q Consensus       164 ~~~~~~~  170 (216)
                      +.....+
T Consensus       150 ~~~~~e~  156 (181)
T TIGR00138       150 IEEAKRK  156 (181)
T ss_pred             HHHHHHh
Confidence            4433333

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.75  E-value=6.1e-17  Score=123.42  Aligned_cols=159  Identities=17%  Similarity=0.283  Sum_probs=121.6

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEE
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDA  102 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~  102 (216)
                      .+..||+..++|.+.+.+...  ...|.++||+++|+|.++++++.+|+..++.||.|..++..+++|++..++. ++++
T Consensus        20 ~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~   97 (187)
T COG0742          20 PGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARV   97 (187)
T ss_pred             CCcCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEE
Confidence            456899999999999999862  2589999999999999999999999999999999999999999999998865 7999


Q ss_pred             EEecccccccccccc-cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460        103 ILFEINEKSLDSSVF-KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA  181 (216)
Q Consensus       103 ~~~d~~~~~~~~~~~-~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~  181 (216)
                      +.+|+  ........ .+.||+||.||||..-       .......               .+.-.-.+||.+ ++.+++
T Consensus        98 ~~~da--~~~L~~~~~~~~FDlVflDPPy~~~-------l~~~~~~---------------~~~~~~~~~L~~-~~~iv~  152 (187)
T COG0742          98 LRNDA--LRALKQLGTREPFDLVFLDPPYAKG-------LLDKELA---------------LLLLEENGWLKP-GALIVV  152 (187)
T ss_pred             EeecH--HHHHHhcCCCCcccEEEeCCCCccc-------hhhHHHH---------------HHHHHhcCCcCC-CcEEEE
Confidence            99999  64432221 1359999999999733       1111110               011113679999 999999


Q ss_pred             eeecC-----CCccc-cccccccceEEEEEEEEe
Q psy17460        182 EMKYD-----LNQSY-KFHKKSLHDIEVDLLRII  209 (216)
Q Consensus       182 ~~~~~-----~~~~~-~~~~~~~~~~~~~~~r~~  209 (216)
                      |+...     ....| ....+.++.+.+.+++..
T Consensus       153 E~~~~~~~~~~~~~~~~~r~k~yG~t~l~~y~~~  186 (187)
T COG0742         153 EHDKDVELPELPANFELHREKKYGQTKLTFYRRE  186 (187)
T ss_pred             EeCCCcCccccCCCeEEEEEeecCCEEEEEEEec
Confidence            98844     34456 444557778888888764

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.73  E-value=1.1e-16  Score=124.31  Aligned_cols=153  Identities=14%  Similarity=0.106  Sum_probs=113.4

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEE
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDA  102 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~  102 (216)
                      ...+||...+.+.+.+.+...   .++.+|||++||+|.++++++.+|+.+|+++|.++.+++.+++|+..+++. ++++
T Consensus        27 ~~~rpt~~~vrea~f~~l~~~---~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~  103 (189)
T TIGR00095        27 GSTRPTTRVVRELFFNILRPE---IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEV  103 (189)
T ss_pred             CCCCCchHHHHHHHHHHHHHh---cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEE
Confidence            446888999999999987654   468899999999999999999999889999999999999999999999886 6999


Q ss_pred             EEeccccccccccc--ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeee
Q psy17460        103 ILFEINEKSLDSSV--FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVI  180 (216)
Q Consensus       103 ~~~d~~~~~~~~~~--~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~  180 (216)
                      +.+|+  .+.....  ....||+|+.||||...       +....+....                 ...|+.+ +|.++
T Consensus       104 ~~~D~--~~~l~~~~~~~~~~dvv~~DPPy~~~-------~~~~~l~~l~-----------------~~~~l~~-~~iiv  156 (189)
T TIGR00095       104 VRNSA--LRALKFLAKKPTFDNVIYLDPPFFNG-------ALQALLELCE-----------------NNWILED-TVLIV  156 (189)
T ss_pred             EehhH--HHHHHHhhccCCCceEEEECcCCCCC-------cHHHHHHHHH-----------------HCCCCCC-CeEEE
Confidence            99999  6643211  11358999999999633       1222221111                 2457788 99999


Q ss_pred             eeeecCC-----Cccc-cccccccceEEEEEE
Q psy17460        181 AEMKYDL-----NQSY-KFHKKSLHDIEVDLL  206 (216)
Q Consensus       181 ~~~~~~~-----~~~~-~~~~~~~~~~~~~~~  206 (216)
                      .|+....     ...+ ....++++++.+.++
T Consensus       157 ~E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~  188 (189)
T TIGR00095       157 VEEDREPELPPVEAWLSLKRQKKGGVSYLLYY  188 (189)
T ss_pred             EEecCCCCCCCCcCCeEEEEEeecCcEEEEEE
Confidence            9876422     1223 455567777776655

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=1.9e-16  Score=129.89  Aligned_cols=128  Identities=16%  Similarity=0.162  Sum_probs=98.5

Q ss_pred             EEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCC
Q psy17460         52 TVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      +|||+|||||++++.++...+ ..|+|+|+|+++++.|+.|+..+++.++.++.+|.  .+...    ++||+|++||||
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl--f~~~~----~~fDlIVsNPPY  186 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL--FEPLR----GKFDLIVSNPPY  186 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec--ccccC----CceeEEEeCCCC
Confidence            799999999999999999876 69999999999999999999999976777888888  66553    599999999999


Q ss_pred             CCCC-CCCCHHH--H--HHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCccc
Q psy17460        131 GTRN-CGIDLAF--V--QYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSY  191 (216)
Q Consensus       131 ~~~~-~~~~~~~--~--~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  191 (216)
                      ...+ .......  .  ..++-.+.     ........++..+..+|++ +|.+++++++.+.+..
T Consensus       187 ip~~~~~~~~~~~~~EP~~Al~~g~-----dGl~~~~~i~~~a~~~l~~-~g~l~le~g~~q~~~v  246 (280)
T COG2890         187 IPAEDPELLPEVVRYEPLLALVGGG-----DGLEVYRRILGEAPDILKP-GGVLILEIGLTQGEAV  246 (280)
T ss_pred             CCCcccccChhhhccCHHHHHccCc-----cHHHHHHHHHHhhHHHcCC-CcEEEEEECCCcHHHH
Confidence            8663 1111110  0  11222222     1122467888899999999 9999999998887754

>TIGR00452 methyltransferase, putative

Probab=99.71  E-value=6.1e-16  Score=128.49  Aligned_cols=125  Identities=19%  Similarity=0.241  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHH-HHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCC
Q psy17460          3 LKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHT-IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD   81 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~   81 (216)
                      .++|+..++++ ..+++++..+++|.++.+.+..+... +...+...++++|||+|||+|.++..++..++..|+|+|+|
T Consensus        75 ~~~l~~~l~~l-~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS  153 (314)
T TIGR00452        75 IKRILEEIMAL-MPWRKGPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPT  153 (314)
T ss_pred             HHHHHHHHHhc-CCCCCCCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCC
Confidence            57899999999 99999999999999999988776644 55655667899999999999999998888887789999999


Q ss_pred             hHHHHHHHHhhhHhC-CCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         82 KEILDIFIDNKNEFE-ITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +.++..++..-.... ..++.+..+++  .+++..   ++||+|+|+-.+.+.
T Consensus       154 ~~ml~q~~~~~~~~~~~~~v~~~~~~i--e~lp~~---~~FD~V~s~gvL~H~  201 (314)
T TIGR00452       154 VLFLCQFEAVRKLLDNDKRAILEPLGI--EQLHEL---YAFDTVFSMGVLYHR  201 (314)
T ss_pred             HHHHHHHHHHHHHhccCCCeEEEECCH--HHCCCC---CCcCEEEEcchhhcc
Confidence            999876543222211 12688889999  666543   589999997655443

Known examples to date are restricted to the proteobacteria.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.71  E-value=2e-16  Score=132.98  Aligned_cols=136  Identities=18%  Similarity=0.247  Sum_probs=97.3

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      |.++..+...+...+.......++.+|||+|||||.++++++..+. .++|+|+|+.+++.++.|++.+++.+++++.+|
T Consensus       160 ~~~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D  238 (329)
T TIGR01177       160 FFKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGD  238 (329)
T ss_pred             ccCCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecc
Confidence            4334333333333333333445788999999999999998887765 899999999999999999999988778999999


Q ss_pred             ccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      +  .+.+...  ++||+|++||||+.......           .     ........+++.+.++|+| +|++++...
T Consensus       239 ~--~~l~~~~--~~~D~Iv~dPPyg~~~~~~~-----------~-----~~~~l~~~~l~~~~r~Lk~-gG~lv~~~~  295 (329)
T TIGR01177       239 A--TKLPLSS--ESVDAIATDPPYGRSTTAAG-----------D-----GLESLYERSLEEFHEVLKS-EGWIVYAVP  295 (329)
T ss_pred             h--hcCCccc--CCCCEEEECCCCcCcccccC-----------C-----chHHHHHHHHHHHHHHccC-CcEEEEEEc
Confidence            9  7766543  68999999999986511000           0     0001134567777888888 888877554

This family is found exclusively in the Archaea.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.71  E-value=2.7e-16  Score=129.54  Aligned_cols=128  Identities=16%  Similarity=0.162  Sum_probs=95.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.|+.|+..+++. +++++.+|+  .+....   ++||+|++
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~--~~~~~~---~~fD~Iv~  195 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL--FAALPG---RKYDLIVS  195 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hhccCC---CCccEEEE
Confidence            457899999999999999998754 69999999999999999999998875 699999999  654322   58999999


Q ss_pred             cCCCCCCCCCC--CHHH---HHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCC
Q psy17460        127 NPPFGTRNCGI--DLAF---VQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDL  187 (216)
Q Consensus       127 npp~~~~~~~~--~~~~---~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  187 (216)
                      ||||.......  ...+   -..++..+.     ........+++.+.++|++ +|.++++++...
T Consensus       196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~-----dGl~~~~~il~~a~~~L~~-gG~l~~e~g~~~  255 (284)
T TIGR03533       196 NPPYVDAEDMADLPAEYHHEPELALASGE-----DGLDLVRRILAEAADHLNE-NGVLVVEVGNSM  255 (284)
T ss_pred             CCCCCCccchhhCCHhhhcCHHHHhcCCC-----cHHHHHHHHHHHHHHhcCC-CCEEEEEECcCH
Confidence            99998652110  0101   011221111     0111246788889999999 999999999755

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.71  E-value=2.7e-16  Score=133.82  Aligned_cols=147  Identities=16%  Similarity=0.121  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS  111 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  111 (216)
                      -.+.++..+...+.  ++.+|||+|||+|.+++.++... ..+|+|+|+|+.+++.|++|+..++. +++++.+|+  .+
T Consensus       237 eTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl--~e  311 (423)
T PRK14966        237 ETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSW--FD  311 (423)
T ss_pred             cHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcch--hc
Confidence            34455555543322  45699999999999999888754 37999999999999999999988876 899999999  55


Q ss_pred             cccccccCcccEEEEcCCCCCCCC-CCCHHHH----HHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460        112 LDSSVFKQKVDTVIMNPPFGTRNC-GIDLAFV----QYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD  186 (216)
Q Consensus       112 ~~~~~~~~~~D~vi~npp~~~~~~-~~~~~~~----~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  186 (216)
                      ..... .++||+|+|||||..... .......    ..++..+.     ........+++.+.++|+| +|.+++|.++.
T Consensus       312 ~~l~~-~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~-----dGL~~yr~Ii~~a~~~Lkp-gG~lilEiG~~  384 (423)
T PRK14966        312 TDMPS-EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFS-----DGLSCIRTLAQGAPDRLAE-GGFLLLEHGFD  384 (423)
T ss_pred             ccccc-CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCC-----chHHHHHHHHHHHHHhcCC-CcEEEEEECcc
Confidence            43211 157999999999986411 1110000    11221111     0111246788888999999 99999999988


Q ss_pred             CCccc
Q psy17460        187 LNQSY  191 (216)
Q Consensus       187 ~~~~~  191 (216)
                      +....
T Consensus       385 Q~e~V  389 (423)
T PRK14966        385 QGAAV  389 (423)
T ss_pred             HHHHH
Confidence            76654

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.70  E-value=9.7e-17  Score=114.88  Aligned_cols=114  Identities=21%  Similarity=0.329  Sum_probs=86.1

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      |.+|||+|||+|.+++.+++.+..+++|+|+|+.+++.++.++...+.. +++++.+|+  .+.......++||+|++||
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~D~Iv~np   78 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA--RDLPEPLPDGKFDLIVTNP   78 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH--HHHHHTCTTT-EEEEEE--
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch--hhchhhccCceeEEEEECC
Confidence            5689999999999999999887679999999999999999999998874 799999999  7765222237999999999


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      ||+.......                 ........+++.+.++|++ +|.+++-.
T Consensus        79 P~~~~~~~~~-----------------~~~~~~~~~~~~~~~~L~~-gG~~~~~~  115 (117)
T PF13659_consen   79 PYGPRSGDKA-----------------ALRRLYSRFLEAAARLLKP-GGVLVFIT  115 (117)
T ss_dssp             STTSBTT---------------------GGCHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             CCccccccch-----------------hhHHHHHHHHHHHHHHcCC-CeEEEEEe
Confidence            9985410000                 0001334677788899999 88887643

...

>PHA03412 putative methyltransferase; Provisional

Probab=99.70  E-value=2.8e-16  Score=124.21  Aligned_cols=107  Identities=20%  Similarity=0.219  Sum_probs=84.2

Q ss_pred             HHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc----CCCEEEEEeCChHHHH
Q psy17460         11 QQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL----GADFCFALECDKEILD   86 (216)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~----~~~~v~~iD~~~~~~~   86 (216)
                      .+++........+.+||.||..++..++..  .    ..+.+|||+|||+|.+++.+++.    ...+|+++|+|+.+++
T Consensus        17 ~n~~~~~~~~~~~~GqFfTP~~iAr~~~i~--~----~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~   90 (241)
T PHA03412         17 ENFHEGAFTNNSELGAFFTPIGLARDFTID--A----CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYK   90 (241)
T ss_pred             hhcccccccccccCCccCCCHHHHHHHHHh--c----cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHH
Confidence            444444445567789999999998876422  1    24669999999999999988764    2358999999999999


Q ss_pred             HHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         87 IFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        87 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      .|+.|..     ++.++.+|+  ......   ++||+||+||||+..
T Consensus        91 ~Ar~n~~-----~~~~~~~D~--~~~~~~---~~FDlIIsNPPY~~~  127 (241)
T PHA03412         91 LGKRIVP-----EATWINADA--LTTEFD---TLFDMAISNPPFGKI  127 (241)
T ss_pred             HHHhhcc-----CCEEEEcch--hccccc---CCccEEEECCCCCCc
Confidence            9998863     578999999  665433   689999999999965

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.69  E-value=6.3e-16  Score=127.49  Aligned_cols=130  Identities=18%  Similarity=0.203  Sum_probs=96.9

Q ss_pred             CEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460         51 KTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      .+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.|+.|+..+++. +++++.+|+  .+....   ++||+|++||
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~--~~~~~~---~~fDlIvsNP  190 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL--FEPLAG---QKIDIIVSNP  190 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hccCcC---CCccEEEECC
Confidence            6899999999999999998765 79999999999999999999988886 499999999  664321   4899999999


Q ss_pred             CCCCCCCCCC----HHH-HHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCccc
Q psy17460        129 PFGTRNCGID----LAF-VQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSY  191 (216)
Q Consensus       129 p~~~~~~~~~----~~~-~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  191 (216)
                      ||........    ..+ -..++..+.     ........++..+.++|++ +|.++++++..+....
T Consensus       191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~-----dgl~~~~~ii~~a~~~L~~-gG~l~~e~g~~q~~~~  252 (284)
T TIGR00536       191 PYIDEEDLADLPNVVRFEPLLALVGGD-----DGLNILRQIIELAPDYLKP-NGFLVCEIGNWQQKSL  252 (284)
T ss_pred             CCCCcchhhcCCcccccCcHHHhcCCC-----cHHHHHHHHHHHHHHhccC-CCEEEEEECccHHHHH
Confidence            9986521000    000 011221111     0111356788889999999 9999999998766554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.68  E-value=1.8e-15  Score=116.53  Aligned_cols=125  Identities=14%  Similarity=0.161  Sum_probs=93.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|.++..++..+. +|+++|+++++++.++.|+..++. +++++.+|+  .+...    ++||+|++|
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~--~~~~~----~~fD~Vi~n   89 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDL--FKGVR----GKFDVILFN   89 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccc--ccccC----CcccEEEEC
Confidence            3667899999999999999999877 899999999999999999988877 789999999  66542    589999999


Q ss_pred             CCCCCCCC-CCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460        128 PPFGTRNC-GIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD  186 (216)
Q Consensus       128 pp~~~~~~-~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  186 (216)
                      |||+.... .....+...++..+..     .......+++.+.++|+| +|++++.....
T Consensus        90 ~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~Lk~-gG~~~~~~~~~  143 (179)
T TIGR00537        90 PPYLPLEDDLRRGDWLDVAIDGGKD-----GRKVIDRFLDELPEILKE-GGRVQLIQSSL  143 (179)
T ss_pred             CCCCCCcchhcccchhhhhhhcCCc-----hHHHHHHHHHhHHHhhCC-CCEEEEEEecc
Confidence            99986621 1111122333332221     111245678888899999 99888765543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.67  E-value=2.5e-15  Score=127.52  Aligned_cols=112  Identities=13%  Similarity=0.178  Sum_probs=87.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC---ceEEEEecccccccccccccCcccEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT---NCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~---~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      .+.+|||+|||+|.+++.+++.++ .+|+++|+|+.+++.++.|+..++..   +++++.+|+  ......   ++||+|
T Consensus       228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~--l~~~~~---~~fDlI  302 (378)
T PRK15001        228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA--LSGVEP---FRFNAV  302 (378)
T ss_pred             cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc--cccCCC---CCEEEE
Confidence            346899999999999999998865 79999999999999999999877642   689999998  654322   589999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460        125 IMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD  186 (216)
Q Consensus       125 i~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  186 (216)
                      +|||||+.....                    .......+++.+.++|++ +|.+++.....
T Consensus       303 lsNPPfh~~~~~--------------------~~~ia~~l~~~a~~~Lkp-GG~L~iV~nr~  343 (378)
T PRK15001        303 LCNPPFHQQHAL--------------------TDNVAWEMFHHARRCLKI-NGELYIVANRH  343 (378)
T ss_pred             EECcCcccCccC--------------------CHHHHHHHHHHHHHhccc-CCEEEEEEecC
Confidence            999999854110                    001224577788889999 99988876543

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.66  E-value=1.1e-15  Score=127.16  Aligned_cols=130  Identities=14%  Similarity=0.106  Sum_probs=94.2

Q ss_pred             CEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460         51 KTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      .+|||+|||+|.+++.++...+ .+|+++|+|+.+++.|+.|+..+++. +++++.+|+  .+....   ++||+|++||
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~--~~~l~~---~~fDlIvsNP  209 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL--FAALPG---RRYDLIVSNP  209 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch--hhhCCC---CCccEEEECC
Confidence            6899999999999999888754 79999999999999999999988875 699999998  654322   5899999999


Q ss_pred             CCCCCCCCCCHHHHHHHhh--cCCceEEEe-eCcchHHHHHHHHHhcCccceeeeeeeecCCCc
Q psy17460        129 PFGTRNCGIDLAFVQYAAD--ISKVVYSLH-KTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQ  189 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~--~~~~ly~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  189 (216)
                      ||......   ..+.....  +...++.-. .......+++.+.++|+| +|.++++++.....
T Consensus       210 Pyi~~~~~---~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p-gG~l~~E~g~~~~~  269 (307)
T PRK11805        210 PYVDAEDM---ADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE-DGVLVVEVGNSRVH  269 (307)
T ss_pred             CCCCccch---hhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC-CCEEEEEECcCHHH
Confidence            99854110   00000111  100011100 011246788889999999 99999999976433

>PRK14967 putative methyltransferase; Provisional

Probab=99.65  E-value=2.7e-15  Score=119.55  Aligned_cols=92  Identities=21%  Similarity=0.216  Sum_probs=74.0

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc
Q psy17460         35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS  114 (216)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  114 (216)
                      +.++..+... ...++.+|||+|||+|.++..+++.+..+++++|+++.+++.++.|+..++. +++++.+|+  .+...
T Consensus        23 ~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~--~~~~~   98 (223)
T PRK14967         23 QLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDW--ARAVE   98 (223)
T ss_pred             HHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECch--hhhcc
Confidence            3444444332 3346789999999999999998887656999999999999999999988887 789999999  65432


Q ss_pred             ccccCcccEEEEcCCCCCC
Q psy17460        115 SVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       115 ~~~~~~~D~vi~npp~~~~  133 (216)
                      .   ++||+|++||||...
T Consensus        99 ~---~~fD~Vi~npPy~~~  114 (223)
T PRK14967         99 F---RPFDVVVSNPPYVPA  114 (223)
T ss_pred             C---CCeeEEEECCCCCCC
Confidence            2   689999999999854

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.65  E-value=2.3e-15  Score=121.85  Aligned_cols=148  Identities=11%  Similarity=0.036  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHhhcCC-CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460         32 HLAATILHTIQNNYND-IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE  109 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~-~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  109 (216)
                      ...+.++..+...+.. ..+.+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.+++|+..++   ++++.+|+  
T Consensus        68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~--  142 (251)
T TIGR03704        68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDL--  142 (251)
T ss_pred             ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeec--
Confidence            3445555554433221 2345899999999999999887643 589999999999999999998765   47899999  


Q ss_pred             cccccccccCcccEEEEcCCCCCCCCC--C--CHHHH--HHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        110 KSLDSSVFKQKVDTVIMNPPFGTRNCG--I--DLAFV--QYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       110 ~~~~~~~~~~~~D~vi~npp~~~~~~~--~--~~~~~--~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      .+.......++||+|++||||......  .  +.+..  ..++..+.     ........+++.+.++|++ +|.+++++
T Consensus       143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~-----dgl~~~~~i~~~a~~~L~~-gG~l~l~~  216 (251)
T TIGR03704       143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGA-----DGLDVLRRVAAGAPDWLAP-GGHLLVET  216 (251)
T ss_pred             hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCC-----cHHHHHHHHHHHHHHhcCC-CCEEEEEE
Confidence            654322112579999999999753100  0  00000  12222111     0111246788888999999 99999999


Q ss_pred             ecCCCcc
Q psy17460        184 KYDLNQS  190 (216)
Q Consensus       184 ~~~~~~~  190 (216)
                      +..+...
T Consensus       217 ~~~~~~~  223 (251)
T TIGR03704       217 SERQAPL  223 (251)
T ss_pred             CcchHHH
Confidence            8665543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=3.1e-15  Score=121.55  Aligned_cols=109  Identities=19%  Similarity=0.219  Sum_probs=88.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .+.+|||+|||.|.+++.+++..+ .+++.+|+|..+++.++.|+..|+.++..++..|.  .+...    ++||.|+||
T Consensus       158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~--~~~v~----~kfd~IisN  231 (300)
T COG2813         158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL--YEPVE----GKFDLIISN  231 (300)
T ss_pred             CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc--ccccc----ccccEEEeC
Confidence            445899999999999999999876 89999999999999999999999987667778887  66543    599999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      ||||.-...        ..            ....++++.+.++|++ +|.+.+...
T Consensus       232 PPfh~G~~v--------~~------------~~~~~~i~~A~~~L~~-gGeL~iVan  267 (300)
T COG2813         232 PPFHAGKAV--------VH------------SLAQEIIAAAARHLKP-GGELWIVAN  267 (300)
T ss_pred             CCccCCcch--------hH------------HHHHHHHHHHHHhhcc-CCEEEEEEc
Confidence            999843100        00            1124788889999999 998888776

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.65  E-value=1e-15  Score=117.92  Aligned_cols=97  Identities=27%  Similarity=0.371  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CE---------EEEEeCChHHHHHHHHhhhHhCCC-ceE
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DF---------CFALECDKEILDIFIDNKNEFEIT-NCD  101 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~---------v~~iD~~~~~~~~~~~~~~~~~~~-~v~  101 (216)
                      +.+.++..+.......++..|+|+.||+|++.++++..+. ..         ++|+|+++++++.++.|++..++. .+.
T Consensus        12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~   91 (179)
T PF01170_consen   12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID   91 (179)
T ss_dssp             S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred             CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence            4444444444444456888999999999999999887644 33         889999999999999999999887 589


Q ss_pred             EEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460        102 AILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       102 ~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +..+|+  .+++...  +++|.|++||||+.+
T Consensus        92 ~~~~D~--~~l~~~~--~~~d~IvtnPPyG~r  119 (179)
T PF01170_consen   92 FIQWDA--RELPLPD--GSVDAIVTNPPYGRR  119 (179)
T ss_dssp             EEE--G--GGGGGTT--SBSCEEEEE--STTS
T ss_pred             EEecch--hhccccc--CCCCEEEECcchhhh
Confidence            999999  7777322  799999999999976

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.65  E-value=4.1e-15  Score=120.22  Aligned_cols=134  Identities=16%  Similarity=0.137  Sum_probs=94.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .+.+|||+|||+|.++..++...+ .+++|+|+++.+++.++.++..+++.+++++.+|+  .+....   ++||+|++|
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~---~~fD~Vi~n  161 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW--FEPLPG---GKFDLIVSN  161 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch--hccCcC---CceeEEEEC
Confidence            456899999999999999888744 69999999999999999999988887799999999  663322   789999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCc--eEEE-eeCcchHHHHHHHHHhcCccceeeeeeeecCCCcc
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKV--VYSL-HKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQS  190 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~--ly~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  190 (216)
                      |||........  ...........  ++.. ........+++.+.++|++ +|.++++.++.....
T Consensus       162 pPy~~~~~~~~--~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~-gG~~~~~~~~~~~~~  224 (251)
T TIGR03534       162 PPYIPEADIHL--LDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP-GGWLLLEIGYDQGEA  224 (251)
T ss_pred             CCCCchhhhhh--cChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc-CCEEEEEECccHHHH
Confidence            99985411000  00000000000  1100 0011234677888999999 999999888765444

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.65  E-value=4.7e-15  Score=117.99  Aligned_cols=104  Identities=15%  Similarity=0.209  Sum_probs=84.3

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .+|.+|||+|||||-+++.+++. +.++|+|+|+|++|++.+++.....+..+++++.+|+  .++|+.+  ++||+|.+
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA--e~LPf~D--~sFD~vt~  125 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA--ENLPFPD--NSFDAVTI  125 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech--hhCCCCC--CccCEEEe
Confidence            37999999999999999998887 4589999999999999999999987776799999999  8888876  89999999


Q ss_pred             cCCCCCC-CCCCCHHHHHHHhhcCCceEEE
Q psy17460        127 NPPFGTR-NCGIDLAFVQYAADISKVVYSL  155 (216)
Q Consensus       127 npp~~~~-~~~~~~~~~~~~l~~~~~ly~~  155 (216)
                      .--+.+. +....++.+.+++++++.+.++
T Consensus       126 ~fglrnv~d~~~aL~E~~RVlKpgG~~~vl  155 (238)
T COG2226         126 SFGLRNVTDIDKALKEMYRVLKPGGRLLVL  155 (238)
T ss_pred             eehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence            5554444 4444556666666666653333

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.65  E-value=2.5e-15  Score=132.68  Aligned_cols=132  Identities=17%  Similarity=0.215  Sum_probs=96.1

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|.+++.++... ..+|+++|+|+.+++.|+.|+..+++. +++++.+|+  .+....   ++||+|++
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~--~~~~~~---~~fDlIvs  212 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW--FENIEK---QKFDFIVS  212 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch--hhhCcC---CCccEEEE
Confidence            35689999999999999887653 379999999999999999999888875 699999998  654322   58999999


Q ss_pred             cCCCCCCCCC--CCHHHH----HHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCccc
Q psy17460        127 NPPFGTRNCG--IDLAFV----QYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSY  191 (216)
Q Consensus       127 npp~~~~~~~--~~~~~~----~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  191 (216)
                      ||||......  ......    ..++..+.     ........+++.+.++|++ +|.+++++++.+....
T Consensus       213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~-----dGl~~~~~il~~a~~~L~~-gG~l~lEig~~q~~~v  277 (506)
T PRK01544        213 NPPYISHSEKSEMAIETINYEPSIALFAEE-----DGLQAYFIIAENAKQFLKP-NGKIILEIGFKQEEAV  277 (506)
T ss_pred             CCCCCCchhhhhcCchhhccCcHHHhcCCc-----cHHHHHHHHHHHHHHhccC-CCEEEEEECCchHHHH
Confidence            9999975221  111100    11222111     0111245678888999999 9999999998765543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.64  E-value=3.7e-15  Score=105.78  Aligned_cols=108  Identities=21%  Similarity=0.280  Sum_probs=82.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      |+.+|||+|||+|.++..+++. ...+|+|+|+|+++++.+++++...+.. +++++.+|+ .......   +.||+|++
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~---~~~D~v~~   76 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFL---EPFDLVIC   76 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTS---SCEEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccC---CCCCEEEE
Confidence            5789999999999999999983 3469999999999999999999655543 899999999 2333322   68999999


Q ss_pred             cC-CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        127 NP-PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       127 np-p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      +. ..+..                      ........+++.+.++|+| +|+++++.
T Consensus        77 ~~~~~~~~----------------------~~~~~~~~~l~~~~~~L~p-gG~lvi~~  111 (112)
T PF12847_consen   77 SGFTLHFL----------------------LPLDERRRVLERIRRLLKP-GGRLVINT  111 (112)
T ss_dssp             CSGSGGGC----------------------CHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             CCCccccc----------------------cchhHHHHHHHHHHHhcCC-CcEEEEEE
Confidence            77 22211                      0002345667778899999 99998864

...

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.64  E-value=5.8e-15  Score=110.75  Aligned_cols=82  Identities=24%  Similarity=0.375  Sum_probs=69.0

Q ss_pred             CCCEEEEecCCCCHhHHHHh-HcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSI-LLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~-~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|.++..++ ..++ .+++|+|+|+++++.|+.+++..+.++++++.+|+  .+++.... +.||+|++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~--~~l~~~~~-~~~D~I~~   79 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI--EDLPQELE-EKFDIIIS   79 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT--TCGCGCSS-TTEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeeh--hccccccC-CCeeEEEE
Confidence            67899999999999999999 4443 79999999999999999999999988899999999  66542111 69999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      ++++++.
T Consensus        80 ~~~l~~~   86 (152)
T PF13847_consen   80 NGVLHHF   86 (152)
T ss_dssp             ESTGGGT
T ss_pred             cCchhhc
Confidence            9987654

...

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.63  E-value=3.1e-15  Score=119.73  Aligned_cols=102  Identities=15%  Similarity=0.127  Sum_probs=69.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .+|.+|||+|||||.++..+++. ++ .+|+|+|+|++|++.|++++...+..+++++++|+  .++++.+  ++||+|+
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da--~~lp~~d--~sfD~v~  121 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA--EDLPFPD--NSFDAVT  121 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT--TB--S-T--T-EEEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH--HHhcCCC--CceeEEE
Confidence            47889999999999999998876 44 79999999999999999999988777899999999  7777765  8999999


Q ss_pred             EcCCCCCC-CCCCCHHHHHHHhhcCCceE
Q psy17460        126 MNPPFGTR-NCGIDLAFVQYAADISKVVY  153 (216)
Q Consensus       126 ~npp~~~~-~~~~~~~~~~~~l~~~~~ly  153 (216)
                      |.--++.. +.....+.+.+++++++.+.
T Consensus       122 ~~fglrn~~d~~~~l~E~~RVLkPGG~l~  150 (233)
T PF01209_consen  122 CSFGLRNFPDRERALREMYRVLKPGGRLV  150 (233)
T ss_dssp             EES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred             HHhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence            95544433 33344555566666666633

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.62  E-value=1.6e-14  Score=109.72  Aligned_cols=119  Identities=21%  Similarity=0.288  Sum_probs=97.2

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      .|.++++...++.+..    .++++++|+|||||+++++++..++ .+|+++|.++++++..++|....+.+|+.++.|+
T Consensus        17 ~TK~EIRal~ls~L~~----~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~   92 (187)
T COG2242          17 MTKEEIRALTLSKLRP----RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD   92 (187)
T ss_pred             CcHHHHHHHHHHhhCC----CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc
Confidence            6778888777776654    5899999999999999999997776 8999999999999999999999999899999999


Q ss_pred             ccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      +  .+.....  .+||.||..-. .                            ..+.+++.+...|++ +|+++...-
T Consensus        93 A--p~~L~~~--~~~daiFIGGg-~----------------------------~i~~ile~~~~~l~~-ggrlV~nai  136 (187)
T COG2242          93 A--PEALPDL--PSPDAIFIGGG-G----------------------------NIEEILEAAWERLKP-GGRLVANAI  136 (187)
T ss_pred             c--hHhhcCC--CCCCEEEECCC-C----------------------------CHHHHHHHHHHHcCc-CCeEEEEee
Confidence            9  8876543  37999998653 1                            335666667777777 777777544

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.62  E-value=3.7e-15  Score=123.22  Aligned_cols=129  Identities=20%  Similarity=0.283  Sum_probs=101.6

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEe-c
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF-E  106 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~-d  106 (216)
                      ..+..++..|+++..-    .+|+.|||++||||.+.+++...|. +++|.|++..|++-|+.|++..++....++.. |
T Consensus       180 s~~P~lAR~mVNLa~v----~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~D  254 (347)
T COG1041         180 SMDPRLARAMVNLARV----KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLD  254 (347)
T ss_pred             CcCHHHHHHHHHHhcc----ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecc
Confidence            3345777777777654    4899999999999999999999987 99999999999999999999999877777777 9


Q ss_pred             ccccccccccccCcccEEEEcCCCCCC--CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTR--NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~--~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      +  .++++..  +++|.|++||||+..  ......                  ..-....++.+.+.|++ +|++++-..
T Consensus       255 a--~~lpl~~--~~vdaIatDPPYGrst~~~~~~l------------------~~Ly~~~le~~~evLk~-gG~~vf~~p  311 (347)
T COG1041         255 A--TNLPLRD--NSVDAIATDPPYGRSTKIKGEGL------------------DELYEEALESASEVLKP-GGRIVFAAP  311 (347)
T ss_pred             c--ccCCCCC--CccceEEecCCCCcccccccccH------------------HHHHHHHHHHHHHHhhc-CcEEEEecC
Confidence            9  8888653  579999999999976  111110                  01124566667888888 888887665

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.60  E-value=1.3e-14  Score=119.04  Aligned_cols=148  Identities=14%  Similarity=0.102  Sum_probs=98.5

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc
Q psy17460         36 TILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS  114 (216)
Q Consensus        36 ~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  114 (216)
                      .++..+.......++.+|||+|||+|.++..++...+ .+++|+|+++.+++.++.|+......+++++.+|+  .+...
T Consensus        95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~--~~~~~  172 (275)
T PRK09328         95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW--FEPLP  172 (275)
T ss_pred             HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc--cCcCC
Confidence            3334333222334677999999999999999888754 79999999999999999998832333799999999  65433


Q ss_pred             ccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEE-eeCcchHHHHHHHHHhcCccceeeeeeeecCCCccc
Q psy17460        115 SVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSL-HKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSY  191 (216)
Q Consensus       115 ~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  191 (216)
                      .   ++||+|++||||.......  ............  ++.. ........+++.+.++|++ +|.++++++......+
T Consensus       173 ~---~~fD~Iv~npPy~~~~~~~--~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~-gG~l~~e~g~~~~~~~  246 (275)
T PRK09328        173 G---GRFDLIVSNPPYIPEADIH--LLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP-GGWLLLEIGYDQGEAV  246 (275)
T ss_pred             C---CceeEEEECCCcCCcchhh--hCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc-CCEEEEEECchHHHHH
Confidence            2   6899999999997541100  000001100000  1100 0111346677888899999 9999999987655544

>PHA03411 putative methyltransferase; Provisional

Probab=99.60  E-value=1.8e-14  Score=116.41  Aligned_cols=94  Identities=28%  Similarity=0.319  Sum_probs=76.0

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEE
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDA  102 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~  102 (216)
                      .++|.||..+...++   ..   ...+.+|||+|||+|.++..++... ..+|+|+|+++.+++.++++..     ++++
T Consensus        45 ~G~FfTP~~i~~~f~---~~---~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----~v~~  113 (279)
T PHA03411         45 SGAFFTPEGLAWDFT---ID---AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----EAEW  113 (279)
T ss_pred             ceeEcCCHHHHHHHH---hc---cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----CCEE
Confidence            689999999875542   11   1245689999999999998887764 3699999999999999998742     6889


Q ss_pred             EEecccccccccccccCcccEEEEcCCCCCC
Q psy17460        103 ILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       103 ~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +.+|+  .++...   .+||+|++||||+..
T Consensus       114 v~~D~--~e~~~~---~kFDlIIsNPPF~~l  139 (279)
T PHA03411        114 ITSDV--FEFESN---EKFDVVISNPPFGKI  139 (279)
T ss_pred             EECch--hhhccc---CCCcEEEEcCCcccc
Confidence            99999  776533   689999999999976

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.59  E-value=1.8e-14  Score=121.31  Aligned_cols=108  Identities=16%  Similarity=0.152  Sum_probs=86.2

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ..+|||+|||+|.++..+++..+ .+|+++|+|+.+++.++.++..+++ ..+++.+|+  .... .   ++||+|+|||
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~--~~~~-~---~~fDlIvsNP  269 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNV--FSDI-K---GRFDMIISNP  269 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEccc--cccc-C---CCccEEEECC
Confidence            44899999999999999998765 6899999999999999999999887 567888888  6533 2   6899999999


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      |||.-...                    .......+++.+.++|+| +|.+++..+.
T Consensus       270 PFH~g~~~--------------------~~~~~~~~i~~a~~~Lkp-gG~L~iVan~  305 (342)
T PRK09489        270 PFHDGIQT--------------------SLDAAQTLIRGAVRHLNS-GGELRIVANA  305 (342)
T ss_pred             CccCCccc--------------------cHHHHHHHHHHHHHhcCc-CCEEEEEEeC
Confidence            99853000                    011235678888999999 9998876664

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.59  E-value=8.7e-14  Score=116.52  Aligned_cols=148  Identities=20%  Similarity=0.262  Sum_probs=101.6

Q ss_pred             hHHHHHHHHHhhcccCCCcccCccccCCHHH-HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCC
Q psy17460          3 LKHIEQYLQQLTFNFSNPKVHLEQYHTPPHL-AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD   81 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~   81 (216)
                      +++++..++.+ ..++..+..+..+....+. .......+...+...+|++|||+|||+|..+..++..++..|+|+|++
T Consensus        76 ~~~l~~~l~~~-~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S  154 (322)
T PRK15068         76 RKRIENLLRAL-MPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPS  154 (322)
T ss_pred             HHHHHHHHHhh-cCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCC
Confidence            56788888888 5566666666555544333 333344445555556889999999999999999999888789999999


Q ss_pred             hHHHHHHHHhhhHhCC-CceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcc
Q psy17460         82 KEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTST  160 (216)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~  160 (216)
                      +.++..++......+. .+++++.+|+  .+++..   ++||+|+|...+++.                         .+
T Consensus       155 ~~~l~q~~a~~~~~~~~~~i~~~~~d~--e~lp~~---~~FD~V~s~~vl~H~-------------------------~d  204 (322)
T PRK15068        155 QLFLCQFEAVRKLLGNDQRAHLLPLGI--EQLPAL---KAFDTVFSMGVLYHR-------------------------RS  204 (322)
T ss_pred             HHHHHHHHHHHHhcCCCCCeEEEeCCH--HHCCCc---CCcCEEEECChhhcc-------------------------CC
Confidence            9988755443332221 2799999999  666652   789999996544332                         12


Q ss_pred             hHHHHHHHHHhcCccceeeeee
Q psy17460        161 RESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       161 ~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      ...+++.+.+.|+| +|.++++
T Consensus       205 p~~~L~~l~~~Lkp-GG~lvl~  225 (322)
T PRK15068        205 PLDHLKQLKDQLVP-GGELVLE  225 (322)
T ss_pred             HHHHHHHHHHhcCC-CcEEEEE
Confidence            34455556666666 6666654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.58  E-value=3.1e-14  Score=121.65  Aligned_cols=124  Identities=19%  Similarity=0.286  Sum_probs=96.6

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      |.+.....+.+++.+...+...++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|+.|++.+++++++++.+|
T Consensus       211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d  289 (374)
T TIGR02085       211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALD  289 (374)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence            666778888888777654333456799999999999999999776 5899999999999999999999998789999999


Q ss_pred             ccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSLHKT  158 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~  158 (216)
                      +  .+..... .++||+|++|||+    .+.+.+.++........  +|+.+..
T Consensus       290 ~--~~~~~~~-~~~~D~vi~DPPr----~G~~~~~l~~l~~~~p~~ivyvsc~p  336 (374)
T TIGR02085       290 S--AKFATAQ-MSAPELVLVNPPR----RGIGKELCDYLSQMAPKFILYSSCNA  336 (374)
T ss_pred             H--HHHHHhc-CCCCCEEEECCCC----CCCcHHHHHHHHhcCCCeEEEEEeCH
Confidence            9  5543221 1469999999996    35566666666555433  7777744

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.58  E-value=3.7e-14  Score=118.59  Aligned_cols=126  Identities=21%  Similarity=0.336  Sum_probs=93.0

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      |++.....+.++..+...+...++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|+.|+..+++++++++.+|
T Consensus       151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D  229 (315)
T PRK03522        151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALD  229 (315)
T ss_pred             eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC
Confidence            445556777777766655443467899999999999999999986 5999999999999999999999998789999999


Q ss_pred             ccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeCcc
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSLHKTST  160 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~~~  160 (216)
                      +  .++... ..+.||+|++|||.    .+...............  +|+.+...+
T Consensus       230 ~--~~~~~~-~~~~~D~Vv~dPPr----~G~~~~~~~~l~~~~~~~ivyvsc~p~t  278 (315)
T PRK03522        230 S--TQFATA-QGEVPDLVLVNPPR----RGIGKELCDYLSQMAPRFILYSSCNAQT  278 (315)
T ss_pred             H--HHHHHh-cCCCCeEEEECCCC----CCccHHHHHHHHHcCCCeEEEEECCccc
Confidence            9  665422 12479999999994    33333333333333222  777765554

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.58  E-value=2.4e-13  Score=105.26  Aligned_cols=105  Identities=18%  Similarity=0.217  Sum_probs=76.8

Q ss_pred             CCcccCccccCCHHHHH-HHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhC
Q psy17460         19 NPKVHLEQYHTPPHLAA-TILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFE   96 (216)
Q Consensus        19 ~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~   96 (216)
                      +.+..+..-.+.+..+. ++++.+...-...++.+|||+|||+|..++.++... ..+|+++|+++++++.+++++..++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~   93 (187)
T PRK00107         14 NKKYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG   93 (187)
T ss_pred             cccccccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC
Confidence            44444444444444443 333433322112247899999999999999888653 3799999999999999999999999


Q ss_pred             CCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         97 ITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        97 ~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      .++++++.+|+  .+...   .++||+|+++.
T Consensus        94 l~~i~~~~~d~--~~~~~---~~~fDlV~~~~  120 (187)
T PRK00107         94 LKNVTVVHGRA--EEFGQ---EEKFDVVTSRA  120 (187)
T ss_pred             CCCEEEEeccH--hhCCC---CCCccEEEEcc
Confidence            87799999999  66554   27999999974

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.57  E-value=6e-14  Score=109.76  Aligned_cols=78  Identities=17%  Similarity=0.164  Sum_probs=67.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|..+..+++.+. +|+|+|+|+++++.++.+....++++++++.+|+  .+.+..   ++||+|+++.
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~--~~~~~~---~~fD~I~~~~  103 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL--NNLTFD---GEYDFILSTV  103 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh--hhCCcC---CCcCEEEEec
Confidence            567999999999999999999875 8999999999999999999888876799999999  665543   6799999988


Q ss_pred             CCCC
Q psy17460        129 PFGT  132 (216)
Q Consensus       129 p~~~  132 (216)
                      .+++
T Consensus       104 ~~~~  107 (197)
T PRK11207        104 VLMF  107 (197)
T ss_pred             chhh
Confidence            7654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.57  E-value=4.6e-14  Score=110.25  Aligned_cols=78  Identities=19%  Similarity=0.205  Sum_probs=66.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.++.+....++ ++.+..+|+  ...+..   ++||+|+++.
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~--~~~~~~---~~fD~I~~~~  102 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDI--NAAALN---EDYDFIFSTV  102 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccc--hhcccc---CCCCEEEEec
Confidence            567999999999999999999875 899999999999999998887777 578888888  554433   5899999999


Q ss_pred             CCCCC
Q psy17460        129 PFGTR  133 (216)
Q Consensus       129 p~~~~  133 (216)
                      +|+..
T Consensus       103 ~~~~~  107 (195)
T TIGR00477       103 VFMFL  107 (195)
T ss_pred             ccccC
Confidence            88754

Part of a tellurite-reducing operon tehA and tehB

>PLN02672 methionine S-methyltransferase

Probab=99.56  E-value=4.2e-14  Score=132.52  Aligned_cols=137  Identities=11%  Similarity=0.054  Sum_probs=99.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCC----------------CceEEEEecccccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEI----------------TNCDAILFEINEKS  111 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~----------------~~v~~~~~d~~~~~  111 (216)
                      ++.+|||+|||+|.+++.+++..+ .+|+|+|+|+++++.|+.|+..+++                .+++++.+|+  .+
T Consensus       118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl--~~  195 (1082)
T PLN02672        118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDL--LG  195 (1082)
T ss_pred             CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECch--hh
Confidence            457899999999999999988754 7999999999999999999987643                2699999999  76


Q ss_pred             cccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcC---------Cc--eEEEe----eCcchHHHHHHHHHhcCccc
Q psy17460        112 LDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADIS---------KV--VYSLH----KTSTRESILKKIQAFKNVEQ  176 (216)
Q Consensus       112 ~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~---------~~--ly~~~----~~~~~~~~~~~~~~~l~~~~  176 (216)
                      ..... ..+||+|++||||........  ....+.+..         +.  ++..+    .......++..+.++|+| +
T Consensus       196 ~~~~~-~~~fDlIVSNPPYI~~~e~~~--l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p-g  271 (1082)
T PLN02672        196 YCRDN-NIELDRIVGCIPQILNPNPEA--MSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP-M  271 (1082)
T ss_pred             hcccc-CCceEEEEECCCcCCCcchhh--cChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC-C
Confidence            54211 136999999999996521100  011111110         00  22211    122357888899999999 9


Q ss_pred             eeeeeeeecCCCccc
Q psy17460        177 VDVIAEMKYDLNQSY  191 (216)
Q Consensus       177 g~~~~~~~~~~~~~~  191 (216)
                      |.+++|+|..+.+..
T Consensus       272 G~l~lEiG~~q~~~v  286 (1082)
T PLN02672        272 GIMIFNMGGRPGQAV  286 (1082)
T ss_pred             CEEEEEECccHHHHH
Confidence            999999999988865

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.56  E-value=5.8e-14  Score=120.36  Aligned_cols=83  Identities=19%  Similarity=0.263  Sum_probs=71.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEeccccccccccc--ccCcccEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSV--FKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~--~~~~~D~v  124 (216)
                      ++++|||+|||||.+++.++..++.+|+++|+|+.+++.+++|+..+++.  +++++.+|+  .++....  ..++||+|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~--~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV--FKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH--HHHHHHHHhcCCCCCEE
Confidence            67899999999999999877777779999999999999999999999985  699999999  7764221  12589999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      |+||||...
T Consensus       298 ilDPP~f~~  306 (396)
T PRK15128        298 VMDPPKFVE  306 (396)
T ss_pred             EECCCCCCC
Confidence            999999654

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.56  E-value=2e-13  Score=105.92  Aligned_cols=92  Identities=22%  Similarity=0.263  Sum_probs=73.1

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      .+.+.+++.++..+..    .++.+|||+|||+|.+++.+++.++ .+|+++|+++.+++.+++|+..+++.+++++.+|
T Consensus        14 ~~~~~~r~~~~~~l~~----~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d   89 (187)
T PRK08287         14 MTKEEVRALALSKLEL----HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE   89 (187)
T ss_pred             CchHHHHHHHHHhcCC----CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            4455566555555533    3678999999999999999888755 7999999999999999999988887689999999


Q ss_pred             ccccccccccccCcccEEEEcCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      +  .... .   ++||+|+++..
T Consensus        90 ~--~~~~-~---~~~D~v~~~~~  106 (187)
T PRK08287         90 A--PIEL-P---GKADAIFIGGS  106 (187)
T ss_pred             c--hhhc-C---cCCCEEEECCC
Confidence            8  4322 2   58999999754

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.56  E-value=2.8e-13  Score=107.36  Aligned_cols=81  Identities=15%  Similarity=0.095  Sum_probs=68.6

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...++.+|||+|||+|.++..+++...  .+|+++|+++++++.|++++...++++++++.+|+  .+.....  .+||+
T Consensus        74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~--~~~~~~~--~~fD~  149 (215)
T TIGR00080        74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG--TQGWEPL--APYDR  149 (215)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc--ccCCccc--CCCCE
Confidence            445889999999999999998888742  57999999999999999999998887899999999  6544322  68999


Q ss_pred             EEEcCCC
Q psy17460        124 VIMNPPF  130 (216)
Q Consensus       124 vi~npp~  130 (216)
                      |+++++.
T Consensus       150 Ii~~~~~  156 (215)
T TIGR00080       150 IYVTAAG  156 (215)
T ss_pred             EEEcCCc
Confidence            9998764

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14968 putative methyltransferase; Provisional

Probab=99.55  E-value=2.5e-13  Score=104.99  Aligned_cols=140  Identities=16%  Similarity=0.234  Sum_probs=95.2

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc--eEEEEec
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN--CDAILFE  106 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~--v~~~~~d  106 (216)
                      +|......++..+..    .++++|||+|||+|.++..++..+ .+++++|+++++++.+++++..+++.+  +.++.+|
T Consensus         7 ~p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d   81 (188)
T PRK14968          7 EPAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD   81 (188)
T ss_pred             CcchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecc
Confidence            344444445554443    477899999999999999988885 599999999999999999998887754  8999999


Q ss_pred             ccccccccccccCcccEEEEcCCCCCCCCCCC-HHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGID-LAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~-~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      +  .+....   ++||+|++||||........ ..+...+...+.     ........+++.+.++|++ +|.+++...
T Consensus        82 ~--~~~~~~---~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~Lk~-gG~~~~~~~  149 (188)
T PRK14968         82 L--FEPFRG---DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGK-----DGREVIDRFLDEVGRYLKP-GGRILLLQS  149 (188)
T ss_pred             c--cccccc---cCceEEEECCCcCCCCchhhhhhhhhhhhccCc-----ChHHHHHHHHHHHHHhcCC-CeEEEEEEc
Confidence            9  665433   48999999999975311000 001111111111     0111245677778888899 887776554

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.54  E-value=2.7e-13  Score=108.39  Aligned_cols=84  Identities=15%  Similarity=0.205  Sum_probs=69.7

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...++.+|||+|||+|..+..+++. ++ .+|+|+|+++++++.++.++...+.++++++.+|+  .+.+...  ++||+
T Consensus        42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~--~~fD~  117 (231)
T TIGR02752        42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA--MELPFDD--NSFDY  117 (231)
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech--hcCCCCC--CCccE
Confidence            3346889999999999999988876 34 69999999999999999998877776899999999  6655432  78999


Q ss_pred             EEEcCCCCCC
Q psy17460        124 VIMNPPFGTR  133 (216)
Q Consensus       124 vi~npp~~~~  133 (216)
                      |+++.++++.
T Consensus       118 V~~~~~l~~~  127 (231)
T TIGR02752       118 VTIGFGLRNV  127 (231)
T ss_pred             EEEecccccC
Confidence            9998776543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.54  E-value=6e-13  Score=104.71  Aligned_cols=110  Identities=14%  Similarity=0.051  Sum_probs=83.7

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      ...++.+|||+|||+|..+..+++. + .++|+++|+++++++.+++|+..++.. +++++.+|+  .+.....  .+||
T Consensus        69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~--~~~~~~~--~~fD  144 (205)
T PRK13944         69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG--KRGLEKH--APFD  144 (205)
T ss_pred             CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc--ccCCccC--CCcc
Confidence            3457889999999999999887765 2 368999999999999999999888875 599999999  6544332  6899


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCccc
Q psy17460        123 TVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSY  191 (216)
Q Consensus       123 ~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  191 (216)
                      +|+++.+....                               .....+.|++ +|++++..+-...+.+
T Consensus       145 ~Ii~~~~~~~~-------------------------------~~~l~~~L~~-gG~lvi~~~~~~~~~~  181 (205)
T PRK13944        145 AIIVTAAASTI-------------------------------PSALVRQLKD-GGVLVIPVEEGVGQVL  181 (205)
T ss_pred             EEEEccCcchh-------------------------------hHHHHHhcCc-CcEEEEEEcCCCceEE
Confidence            99998764311                               1234567799 9999886654444433

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=2.1e-13  Score=117.71  Aligned_cols=128  Identities=22%  Similarity=0.288  Sum_probs=108.4

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      |.+.....+.|+..+...+...+++++||+.||.|.+++.++... .+|+|+|+++++++.|+.|++.|++.|++|+.++
T Consensus       271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~  349 (432)
T COG2265         271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGD  349 (432)
T ss_pred             eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            455567888898888877777788899999999999999999774 4999999999999999999999999899999999


Q ss_pred             cccccccccc-ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeCcch
Q psy17460        107 INEKSLDSSV-FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSLHKTSTR  161 (216)
Q Consensus       107 ~~~~~~~~~~-~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~~~~  161 (216)
                      +  .++.... ....+|+|+.|||    +.+.+..+++........  +|+-+...+.
T Consensus       350 a--e~~~~~~~~~~~~d~VvvDPP----R~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl  401 (432)
T COG2265         350 A--EEFTPAWWEGYKPDVVVVDPP----RAGADREVLKQLAKLKPKRIVYVSCNPATL  401 (432)
T ss_pred             H--HHHhhhccccCCCCEEEECCC----CCCCCHHHHHHHHhcCCCcEEEEeCCHHHH
Confidence            9  6655432 2257899999999    899998999999888877  8877755443

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.53  E-value=7.3e-13  Score=104.75  Aligned_cols=96  Identities=17%  Similarity=0.167  Sum_probs=75.9

Q ss_pred             cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEE
Q psy17460         26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAI  103 (216)
Q Consensus        26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~  103 (216)
                      +..+...+...++..+.    ..++.+|||+|||+|.++..++.. +. .+|+++|+++++++.+++++...+..+++++
T Consensus        57 ~~~~~p~~~~~~~~~l~----~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~  132 (212)
T PRK13942         57 QTISAIHMVAIMCELLD----LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVI  132 (212)
T ss_pred             CEeCcHHHHHHHHHHcC----CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEE
Confidence            44455566666655553    347899999999999999888776 33 6999999999999999999998888789999


Q ss_pred             EecccccccccccccCcccEEEEcCC
Q psy17460        104 LFEINEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus       104 ~~d~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      .+|+  .+.....  .+||+|+++..
T Consensus       133 ~gd~--~~~~~~~--~~fD~I~~~~~  154 (212)
T PRK13942        133 VGDG--TLGYEEN--APYDRIYVTAA  154 (212)
T ss_pred             ECCc--ccCCCcC--CCcCEEEECCC
Confidence            9999  6544332  68999998653

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.52  E-value=1.2e-13  Score=115.70  Aligned_cols=107  Identities=21%  Similarity=0.316  Sum_probs=90.1

Q ss_pred             cCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCC-----------------------------
Q psy17460         23 HLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGAD-----------------------------   73 (216)
Q Consensus        23 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~-----------------------------   73 (216)
                      .+.++..+..+.+.|+..+....++.++..++|+.||+|++++++|..+..                             
T Consensus       165 GyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea  244 (381)
T COG0116         165 GYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEA  244 (381)
T ss_pred             cccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHH
Confidence            355566666688888877777767778889999999999999999887631                             


Q ss_pred             -----------EEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         74 -----------FCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        74 -----------~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                                 .++|+|+|+.+++.|+.|+...|+. .|+|.++|+  ..+....  +.+|+|||||||+.+
T Consensus       245 ~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~--~~l~~~~--~~~gvvI~NPPYGeR  312 (381)
T COG0116         245 EERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA--TDLKEPL--EEYGVVISNPPYGER  312 (381)
T ss_pred             HHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch--hhCCCCC--CcCCEEEeCCCcchh
Confidence                       3779999999999999999999987 599999999  7665443  689999999999987

>PLN02244 tocopherol O-methyltransferase

Probab=99.52  E-value=5e-13  Score=112.88  Aligned_cols=100  Identities=9%  Similarity=-0.112  Sum_probs=76.5

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|.++..+++....+|+|+|+++.+++.++.+....++. +++++.+|+  .+.++..  ++||+|++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~--~~~~~~~--~~FD~V~s  192 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA--LNQPFED--GQFDLVWS  192 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc--ccCCCCC--CCccEEEE
Confidence            467899999999999999988864459999999999999999998887765 799999999  7766543  79999999


Q ss_pred             cCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460        127 NPPFGTR-NCGIDLAFVQYAADISKV  151 (216)
Q Consensus       127 npp~~~~-~~~~~~~~~~~~l~~~~~  151 (216)
                      .-.+++. +.....+-+.+++++++.
T Consensus       193 ~~~~~h~~d~~~~l~e~~rvLkpGG~  218 (340)
T PLN02244        193 MESGEHMPDKRKFVQELARVAAPGGR  218 (340)
T ss_pred             CCchhccCCHHHHHHHHHHHcCCCcE
Confidence            7776654 322222333344444444

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.52  E-value=2.5e-13  Score=118.58  Aligned_cols=123  Identities=16%  Similarity=0.179  Sum_probs=90.8

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEI  107 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~  107 (216)
                      .......+.++..+...+...++.+|||+|||+|.+++.++..+ .+|+|+|+|+++++.|+.|+..+++++++++.+|+
T Consensus       276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~  354 (443)
T PRK13168        276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANL  354 (443)
T ss_pred             EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeCh
Confidence            33455667777777766555677899999999999999999886 59999999999999999999998887899999999


Q ss_pred             cccccccc--cccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeC
Q psy17460        108 NEKSLDSS--VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSLHKT  158 (216)
Q Consensus       108 ~~~~~~~~--~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~  158 (216)
                        .+....  ...++||+|++|||+...    . +.++...+....  +|..+..
T Consensus       355 --~~~l~~~~~~~~~fD~Vi~dPPr~g~----~-~~~~~l~~~~~~~ivyvSCnp  402 (443)
T PRK13168        355 --EEDFTDQPWALGGFDKVLLDPPRAGA----A-EVMQALAKLGPKRIVYVSCNP  402 (443)
T ss_pred             --HHhhhhhhhhcCCCCEEEECcCCcCh----H-HHHHHHHhcCCCeEEEEEeCh
Confidence              543211  112579999999998643    1 233333333323  6766633

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.52  E-value=1.2e-13  Score=112.14  Aligned_cols=105  Identities=17%  Similarity=0.111  Sum_probs=77.7

Q ss_pred             HHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccc
Q psy17460         39 HTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVF  117 (216)
Q Consensus        39 ~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  117 (216)
                      ..+...+...++.+|||+|||+|.++..++...+ .+|+|+|+|+.+++.++..       +++++.+|+  .+++..  
T Consensus        19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~--~~~~~~--   87 (255)
T PRK14103         19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDV--RDWKPK--   87 (255)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcCh--hhCCCC--
Confidence            3344444445788999999999999999888743 6899999999999998753       578999999  665432  


Q ss_pred             cCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEEE
Q psy17460        118 KQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVVYSL  155 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~~  155 (216)
                       ++||+|+++..+++. +.....+-+.+++++++.+...
T Consensus        88 -~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         88 -PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             -CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence             689999999999876 3333344455556666654443

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=1.2e-13  Score=112.90  Aligned_cols=96  Identities=25%  Similarity=0.352  Sum_probs=70.4

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEe
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN-CDAILF  105 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~  105 (216)
                      |.|+.|-...+.-..+.. ...+|++|||+|||||.+++.+++.|+.+|+|+|+||-+++.++.|+..|+++. +..-..
T Consensus       141 FGTG~HpTT~lcL~~Le~-~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~  219 (300)
T COG2264         141 FGTGTHPTTSLCLEALEK-LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF  219 (300)
T ss_pred             cCCCCChhHHHHHHHHHH-hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc
Confidence            555554444333222222 123899999999999999999999999999999999999999999999999853 333333


Q ss_pred             cccccccccccccCcccEEEEcC
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      +.  ...+..   ++||+|++|-
T Consensus       220 ~~--~~~~~~---~~~DvIVANI  237 (300)
T COG2264         220 LL--LEVPEN---GPFDVIVANI  237 (300)
T ss_pred             cc--hhhccc---CcccEEEehh
Confidence            33  333322   5999999975

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.51  E-value=8.8e-13  Score=94.89  Aligned_cols=103  Identities=20%  Similarity=0.229  Sum_probs=81.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.++.++...+.++++++.+|+  ...... ..++||.|++
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~D~v~~   94 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA--PEALED-SLPEPDRVFI   94 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc--cccChh-hcCCCCEEEE
Confidence            3577999999999999999888743 79999999999999999999888877899999998  543211 1158999998


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      ..+..                            ....+++.+.++|+| +|.+++.
T Consensus        95 ~~~~~----------------------------~~~~~l~~~~~~Lk~-gG~li~~  121 (124)
T TIGR02469        95 GGSGG----------------------------LLQEILEAIWRRLRP-GGRIVLN  121 (124)
T ss_pred             CCcch----------------------------hHHHHHHHHHHHcCC-CCEEEEE
Confidence            65422                            123567778899999 9988874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.51  E-value=2.6e-13  Score=124.28  Aligned_cols=119  Identities=13%  Similarity=0.106  Sum_probs=88.7

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++++|||+|||||.+++.++..|+.+|+++|+|+.+++.++.|+..+++.  +++++.+|+  .++.... .++||+||+
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~--~~~l~~~-~~~fDlIil  614 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADC--LAWLKEA-REQFDLIFI  614 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccH--HHHHHHc-CCCcCEEEE
Confidence            57899999999999999999988878999999999999999999999885  699999999  7654221 268999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      ||||....+....  ...+.            .....++..+.++|+| +|.+++....
T Consensus       615 DPP~f~~~~~~~~--~~~~~------------~~y~~l~~~a~~lL~~-gG~l~~~~~~  658 (702)
T PRK11783        615 DPPTFSNSKRMED--SFDVQ------------RDHVALIKDAKRLLRP-GGTLYFSNNK  658 (702)
T ss_pred             CCCCCCCCCccch--hhhHH------------HHHHHHHHHHHHHcCC-CCEEEEEeCC
Confidence            9999755221100  00000            1233455666677777 7777665553

>KOG2904|consensus

Probab=99.51  E-value=3.7e-13  Score=107.17  Aligned_cols=148  Identities=14%  Similarity=0.202  Sum_probs=98.3

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEec
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFE  106 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d  106 (216)
                      .+++..+..+..+.+. .+.++..+||+|||+|++++.++.. +.+.|+++|.++.++.+|.+|++.+++. .+.+++.+
T Consensus       129 ETEE~V~~Vid~~~~~-~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~  207 (328)
T KOG2904|consen  129 ETEEWVEAVIDALNNS-EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNI  207 (328)
T ss_pred             cHHHHHHHHHHHHhhh-hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecc
Confidence            3445555555555543 3456668999999999999887775 4489999999999999999999999887 57776443


Q ss_pred             ccc--cccccccccCcccEEEEcCCCCCCCCCCC----HHHHH--HHhhcCCceEEEeeCcchHHHHHHHHHhcCcccee
Q psy17460        107 INE--KSLDSSVFKQKVDTVIMNPPFGTRNCGID----LAFVQ--YAADISKVVYSLHKTSTRESILKKIQAFKNVEQVD  178 (216)
Q Consensus       107 ~~~--~~~~~~~~~~~~D~vi~npp~~~~~~~~~----~~~~~--~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~  178 (216)
                      .+.  .+ +.....++.|+++|||||...+.-.+    .+.++  .|+..+..     .......+...+.+.|+| +|+
T Consensus       208 me~d~~~-~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~e-----G~~~~~~~~~~a~R~Lq~-gg~  280 (328)
T KOG2904|consen  208 MESDASD-EHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLE-----GYDNLVHYWLLATRMLQP-GGF  280 (328)
T ss_pred             ccccccc-ccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccc-----hhHHHHHHHHhhHhhccc-CCe
Confidence            310  22 22223378999999999987622111    11111  12222211     011234566678999999 999


Q ss_pred             eeeeee
Q psy17460        179 VIAEMK  184 (216)
Q Consensus       179 ~~~~~~  184 (216)
                      +.++.+
T Consensus       281 ~~le~~  286 (328)
T KOG2904|consen  281 EQLELV  286 (328)
T ss_pred             EEEEec
Confidence            999887

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.50  E-value=1.9e-13  Score=111.19  Aligned_cols=102  Identities=22%  Similarity=0.322  Sum_probs=84.5

Q ss_pred             CCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460         19 NPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI   97 (216)
Q Consensus        19 ~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~   97 (216)
                      .++..++| |-....+.+.++..+..    .++++|||+|||+|.++..+++.+ .+|+++|+|+.+++.++.++..  .
T Consensus         2 ~~~k~~GQnfl~d~~~~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~   74 (258)
T PRK14896          2 RMNKKLGQHFLIDDRVVDRIVEYAED----TDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A   74 (258)
T ss_pred             CCCCcCCccccCCHHHHHHHHHhcCC----CCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C
Confidence            46778888 66788888888876643    378899999999999999999985 4899999999999999988754  3


Q ss_pred             CceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         98 TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        98 ~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      ++++++.+|+  .+.+.    ..||.|++|+||...
T Consensus        75 ~~v~ii~~D~--~~~~~----~~~d~Vv~NlPy~i~  104 (258)
T PRK14896         75 GNVEIIEGDA--LKVDL----PEFNKVVSNLPYQIS  104 (258)
T ss_pred             CCEEEEEecc--ccCCc----hhceEEEEcCCcccC
Confidence            3899999999  76654    358999999999753

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.50  E-value=6e-13  Score=107.79  Aligned_cols=110  Identities=18%  Similarity=0.092  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS  111 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  111 (216)
                      .+...+...+...++..++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++.+..     ...++.+|+  ..
T Consensus        25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~--~~   96 (251)
T PRK10258         25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA-----ADHYLAGDI--ES   96 (251)
T ss_pred             HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC-----CCCEEEcCc--cc
Confidence            3444455555554444467799999999999998888776 489999999999999988753     356889999  66


Q ss_pred             cccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460        112 LDSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKV  151 (216)
Q Consensus       112 ~~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~  151 (216)
                      .+...  ++||+|+++.++++. +......-+.+++++++.
T Consensus        97 ~~~~~--~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~  135 (251)
T PRK10258         97 LPLAT--ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGV  135 (251)
T ss_pred             CcCCC--CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeE
Confidence            55443  689999999988765 322233344455555555

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.50  E-value=8.4e-13  Score=107.41  Aligned_cols=152  Identities=18%  Similarity=0.188  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCCh
Q psy17460          3 LKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDK   82 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~   82 (216)
                      ++++++.++++..|.+.|-.-++.+..++.-...-.+.+...+....|++|||+|||.|..+..++..|+..|+|+|.++
T Consensus        69 ~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~  148 (315)
T PF08003_consen   69 RQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP  148 (315)
T ss_pred             HHHHHHHHHhhCCcccCCcccCCEeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh
Confidence            57899999999899999999999999999888888888888877889999999999999999999999999999999998


Q ss_pred             HHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcch
Q psy17460         83 EILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTR  161 (216)
Q Consensus        83 ~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~  161 (216)
                      -..-..+-.-...+.+ .+..+..-+  .+++. .  +.||+|||=--                      +|   ...++
T Consensus       149 lf~~QF~~i~~~lg~~~~~~~lplgv--E~Lp~-~--~~FDtVF~MGV----------------------LY---Hrr~P  198 (315)
T PF08003_consen  149 LFYLQFEAIKHFLGQDPPVFELPLGV--EDLPN-L--GAFDTVFSMGV----------------------LY---HRRSP  198 (315)
T ss_pred             HHHHHHHHHHHHhCCCccEEEcCcch--hhccc-c--CCcCEEEEeee----------------------hh---ccCCH
Confidence            7765544333333332 234443445  44554 2  79999998322                      22   12244


Q ss_pred             HHHHHHHHHhcCccceeeeeeeec
Q psy17460        162 ESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       162 ~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      -..+...++.|++ +|.+++|.-.
T Consensus       199 l~~L~~Lk~~L~~-gGeLvLETlv  221 (315)
T PF08003_consen  199 LDHLKQLKDSLRP-GGELVLETLV  221 (315)
T ss_pred             HHHHHHHHHhhCC-CCEEEEEEee
Confidence            5566666777777 7777776653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.50  E-value=1.5e-13  Score=113.06  Aligned_cols=93  Identities=28%  Similarity=0.395  Sum_probs=69.5

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEe
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN-CDAILF  105 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~  105 (216)
                      |.|+.|-..++.-.++... ..++++|||+|||||.+++.+++.|+.+|+|+|+||.+++.|+.|+..|++.. +.+  .
T Consensus       140 FGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~  216 (295)
T PF06325_consen  140 FGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--S  216 (295)
T ss_dssp             S-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--S
T ss_pred             ccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--E
Confidence            7777776665554444332 34788999999999999999999999999999999999999999999999863 433  2


Q ss_pred             cccccccccccccCcccEEEEcC
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ..  .+.+.    .+||+|++|-
T Consensus       217 ~~--~~~~~----~~~dlvvANI  233 (295)
T PF06325_consen  217 LS--EDLVE----GKFDLVVANI  233 (295)
T ss_dssp             CT--SCTCC----S-EEEEEEES
T ss_pred             Ee--ccccc----ccCCEEEECC
Confidence            23  33332    7999999986

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.50  E-value=2.9e-13  Score=110.97  Aligned_cols=104  Identities=24%  Similarity=0.269  Sum_probs=84.7

Q ss_pred             CCCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC
Q psy17460         18 SNPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE   96 (216)
Q Consensus        18 ~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~   96 (216)
                      ..++..++| |.+...+.+.++..+..    .++.+|||+|||+|.++..++..++ +|+|+|+|+++++.++.++..  
T Consensus        14 ~~~~k~~gq~fl~~~~i~~~i~~~l~~----~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--   86 (272)
T PRK00274         14 HRAKKSLGQNFLIDENILDKIVDAAGP----QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--   86 (272)
T ss_pred             CCCCcccCcCcCCCHHHHHHHHHhcCC----CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--
Confidence            377888998 77788888777776543    4778999999999999999999876 999999999999999987743  


Q ss_pred             CCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         97 ITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        97 ~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                       ++++++.+|+  .+++...  -.+|.|++||||...
T Consensus        87 -~~v~~i~~D~--~~~~~~~--~~~~~vv~NlPY~is  118 (272)
T PRK00274         87 -DNLTIIEGDA--LKVDLSE--LQPLKVVANLPYNIT  118 (272)
T ss_pred             -CceEEEEChh--hcCCHHH--cCcceEEEeCCccch
Confidence             3899999999  6665431  126999999999754

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.49  E-value=7.1e-13  Score=115.42  Aligned_cols=122  Identities=15%  Similarity=0.170  Sum_probs=89.9

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE  109 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  109 (216)
                      .....+.++..+...+...++.+|||+|||+|.+++.++... .+|+|+|+++.+++.|+.|+..+++++++++.+|+  
T Consensus       273 N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~--  349 (431)
T TIGR00479       273 NSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTL--  349 (431)
T ss_pred             CHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCH--
Confidence            345556666666655444567899999999999999998875 48999999999999999999999988999999999  


Q ss_pred             cccccc--cccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeC
Q psy17460        110 KSLDSS--VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSLHKT  158 (216)
Q Consensus       110 ~~~~~~--~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~  158 (216)
                      .+....  ....+||+|++|||..    +.+...++........  +|..+..
T Consensus       350 ~~~l~~~~~~~~~~D~vi~dPPr~----G~~~~~l~~l~~l~~~~ivyvsc~p  398 (431)
T TIGR00479       350 ETVLPKQPWAGQIPDVLLLDPPRK----GCAAEVLRTIIELKPERIVYVSCNP  398 (431)
T ss_pred             HHHHHHHHhcCCCCCEEEECcCCC----CCCHHHHHHHHhcCCCEEEEEcCCH
Confidence            553211  1125799999999953    4455566554443333  6665543

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.49  E-value=2.4e-13  Score=103.82  Aligned_cols=78  Identities=23%  Similarity=0.218  Sum_probs=67.0

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|.++..++..+ .+++++|+|+.+++.+++++...  ++++++.+|+  .+++...  ..||.|++|
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~--~~v~ii~~D~--~~~~~~~--~~~d~vi~n   84 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA--DNLTVIHGDA--LKFDLPK--LQPYKVVGN   84 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC--CCEEEEECch--hcCCccc--cCCCEEEEC
Confidence            467899999999999999999884 59999999999999999988642  3799999999  7766542  469999999


Q ss_pred             CCCCC
Q psy17460        128 PPFGT  132 (216)
Q Consensus       128 pp~~~  132 (216)
                      |||+.
T Consensus        85 ~Py~~   89 (169)
T smart00650       85 LPYNI   89 (169)
T ss_pred             CCccc
Confidence            99974

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.48  E-value=7.2e-13  Score=99.60  Aligned_cols=130  Identities=22%  Similarity=0.210  Sum_probs=79.9

Q ss_pred             CEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCc-ccEEEEcC
Q psy17460         51 KTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQK-VDTVIMNP  128 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~-~D~vi~np  128 (216)
                      ..|+|++||.|..++.+|+... +|+++|+|+..++.|+.|++..|+. +++++.+|+  .+......... +|+||++|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~--~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDF--FELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H--HHHGGGB------SEEEE--
T ss_pred             CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCH--HHHHhhccccccccEEEECC
Confidence            3699999999999999999954 8999999999999999999999976 899999999  77654432122 89999999


Q ss_pred             CCCCC-CC---CC----------CHHHHHHHhhcCCc-eEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        129 PFGTR-NC---GI----------DLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       129 p~~~~-~~---~~----------~~~~~~~~l~~~~~-ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      |++-. ..   .-          -.+.++.+.....+ ++.+-...+...+.+...++..+ +..+-++..
T Consensus        78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LPRn~dl~ql~~~~~~l~~~-~~~~~v~~~  147 (163)
T PF09445_consen   78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLPRNSDLNQLSQLTRELFGP-SKKCEVEQN  147 (163)
T ss_dssp             -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEETTB-HHHHHHT----T-T-TEEEEEEEE
T ss_pred             CCCCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHhccccCC-CCeEEEEEe
Confidence            99975 11   11          12344555555555 33344444566666555555455 555554443

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.47  E-value=7.1e-13  Score=107.76  Aligned_cols=99  Identities=16%  Similarity=0.105  Sum_probs=74.9

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ...++.+|||+|||+|.++..++...+ .+|+|+|+++.+++.++.+..     +++++.+|+  .++...   ++||+|
T Consensus        28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----~~~~~~~d~--~~~~~~---~~fD~v   97 (258)
T PRK01683         28 PLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----DCQFVEADI--ASWQPP---QALDLI   97 (258)
T ss_pred             CCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----CCeEEECch--hccCCC---CCccEE
Confidence            445788999999999999988887643 799999999999999988753     688999999  665433   699999


Q ss_pred             EEcCCCCCC-CCCCCHHHHHHHhhcCCceEE
Q psy17460        125 IMNPPFGTR-NCGIDLAFVQYAADISKVVYS  154 (216)
Q Consensus       125 i~npp~~~~-~~~~~~~~~~~~l~~~~~ly~  154 (216)
                      +++..+++. +.....+-+.+++++++.+..
T Consensus        98 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~  128 (258)
T PRK01683         98 FANASLQWLPDHLELFPRLVSLLAPGGVLAV  128 (258)
T ss_pred             EEccChhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence            999999876 332333344455555554333

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.47  E-value=1.1e-12  Score=108.38  Aligned_cols=96  Identities=23%  Similarity=0.368  Sum_probs=70.9

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEe
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILF  105 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~  105 (216)
                      |.|..+....+....... ...++++|||+|||+|.+++.+++.|+.+|+|+|+|+.+++.++.|+..+++. ++.+..+
T Consensus       138 FgtG~h~tt~l~l~~l~~-~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~  216 (288)
T TIGR00406       138 FGTGTHPTTSLCLEWLED-LDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI  216 (288)
T ss_pred             ccCCCCHHHHHHHHHHHh-hcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec
Confidence            445444444433222222 12367899999999999999988888789999999999999999999988875 4667766


Q ss_pred             cccccccccccccCcccEEEEcCC
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      +.  .... .   ++||+|++|..
T Consensus       217 ~~--~~~~-~---~~fDlVvan~~  234 (288)
T TIGR00406       217 YL--EQPI-E---GKADVIVANIL  234 (288)
T ss_pred             cc--cccc-C---CCceEEEEecC
Confidence            65  3332 1   68999999864

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.47  E-value=4.4e-13  Score=110.69  Aligned_cols=104  Identities=18%  Similarity=0.181  Sum_probs=85.5

Q ss_pred             CCcccCcccc-CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC-
Q psy17460         19 NPKVHLEQYH-TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE-   96 (216)
Q Consensus        19 ~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~-   96 (216)
                      .++..++|.. ....+...++..+..    .++.+|||+|||+|.++..++..+ .+|+++|+|+++++.+++++...+ 
T Consensus         9 ~~kk~~GQnFL~d~~i~~~Iv~~~~~----~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~   83 (294)
T PTZ00338          9 VFNKKFGQHILKNPLVLDKIVEKAAI----KPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPL   83 (294)
T ss_pred             CcCCCCCccccCCHHHHHHHHHhcCC----CCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCC
Confidence            6788899844 566777777765543    478899999999999999988875 489999999999999999987665 


Q ss_pred             CCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         97 ITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        97 ~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      ..+++++.+|+  .+...    ..||.|++|+||...
T Consensus        84 ~~~v~ii~~Da--l~~~~----~~~d~VvaNlPY~Is  114 (294)
T PTZ00338         84 ASKLEVIEGDA--LKTEF----PYFDVCVANVPYQIS  114 (294)
T ss_pred             CCcEEEEECCH--hhhcc----cccCEEEecCCcccC
Confidence            33799999999  66553    478999999999865

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.47  E-value=2.1e-12  Score=105.26  Aligned_cols=103  Identities=20%  Similarity=0.119  Sum_probs=77.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhH---hCCCceEEEEecccccccccccccCccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNE---FEITNCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      .++.+|||+|||||.++..++.. ++ .+|+|+|+|++|++.|+++...   ...++++++.+|+  .++++..  ++||
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~--~~lp~~~--~sfD  147 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA--TDLPFDD--CYFD  147 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc--ccCCCCC--CCEe
Confidence            46889999999999999888875 44 6999999999999999877542   1233799999999  7776653  7899


Q ss_pred             EEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEE
Q psy17460        123 TVIMNPPFGTR-NCGIDLAFVQYAADISKVVYS  154 (216)
Q Consensus       123 ~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~  154 (216)
                      +|+++-.+++. +.....+-+.+++++++.+.+
T Consensus       148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i  180 (261)
T PLN02233        148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSI  180 (261)
T ss_pred             EEEEecccccCCCHHHHHHHHHHHcCcCcEEEE
Confidence            99998777765 333344555666666666333

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.47  E-value=1e-12  Score=107.48  Aligned_cols=109  Identities=18%  Similarity=0.268  Sum_probs=74.6

Q ss_pred             cCCCcccCc--cccCCH----HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHH
Q psy17460         17 FSNPKVHLE--QYHTPP----HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFI   89 (216)
Q Consensus        17 ~~~~~~~~~--~~~t~~----~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~   89 (216)
                      +..+...+.  -|.++.    +....++..+...+...+|.+|||+|||.|.++..+++. |. +|+|+.+|+++.+.++
T Consensus        24 ~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~  102 (273)
T PF02353_consen   24 FLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYAR  102 (273)
T ss_dssp             TS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHH
T ss_pred             hcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHH
Confidence            344444433  345443    344566777777777789999999999999999999988 65 9999999999999999


Q ss_pred             HhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         90 DNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        90 ~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +.+...++. .+++..+|.  .+++     .+||.|++--.+.+.
T Consensus       103 ~~~~~~gl~~~v~v~~~D~--~~~~-----~~fD~IvSi~~~Ehv  140 (273)
T PF02353_consen  103 ERIREAGLEDRVEVRLQDY--RDLP-----GKFDRIVSIEMFEHV  140 (273)
T ss_dssp             HHHHCSTSSSTEEEEES-G--GG--------S-SEEEEESEGGGT
T ss_pred             HHHHhcCCCCceEEEEeec--cccC-----CCCCEEEEEechhhc
Confidence            999999987 699999999  7665     599999987666544

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.47  E-value=4.2e-12  Score=100.38  Aligned_cols=115  Identities=15%  Similarity=0.079  Sum_probs=86.6

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN  108 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  108 (216)
                      +...+...++..+    ...++.+|||+|||+|..+..++... .+++++|+++++++.+++++...++.+++++.+|+ 
T Consensus        62 ~~p~~~~~l~~~l----~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~-  135 (212)
T PRK00312         62 SQPYMVARMTELL----ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG-  135 (212)
T ss_pred             CcHHHHHHHHHhc----CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc-
Confidence            4445555554433    33578899999999999998777764 48999999999999999999988887899999998 


Q ss_pred             ccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        109 EKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       109 ~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                       .+.....  ++||+|+++.++..                               +.+...+.|++ +|.+++..+
T Consensus       136 -~~~~~~~--~~fD~I~~~~~~~~-------------------------------~~~~l~~~L~~-gG~lv~~~~  176 (212)
T PRK00312        136 -WKGWPAY--APFDRILVTAAAPE-------------------------------IPRALLEQLKE-GGILVAPVG  176 (212)
T ss_pred             -ccCCCcC--CCcCEEEEccCchh-------------------------------hhHHHHHhcCC-CcEEEEEEc
Confidence             5532222  68999999876431                               11224567789 999888766

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=99.46  E-value=2.8e-13  Score=113.07  Aligned_cols=109  Identities=27%  Similarity=0.384  Sum_probs=79.0

Q ss_pred             CCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc--------CCCEEEEEeCChHHHHHHHH
Q psy17460         19 NPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL--------GADFCFALECDKEILDIFID   90 (216)
Q Consensus        19 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~--------~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ..+...++|.||.+++..|+.++..    .++.+|+|++||+|.+...+...        ...+++|+|+++.++..|+.
T Consensus        20 ~~~k~~G~~~TP~~i~~l~~~~~~~----~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~   95 (311)
T PF02384_consen   20 ESRKKLGQFYTPREIVDLMVKLLNP----KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKL   95 (311)
T ss_dssp             CTTTSCGGC---HHHHHHHHHHHTT-----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHH
T ss_pred             HhccccceeehHHHHHHHHHhhhhc----cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHh
Confidence            4567789999999999999998854    36779999999999998887762        34799999999999999999


Q ss_pred             hhhHhCCC--ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         91 NKNEFEIT--NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        91 ~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      |+...+..  +..+..+|.  +..+.......||+|++||||+..
T Consensus        96 nl~l~~~~~~~~~i~~~d~--l~~~~~~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen   96 NLLLHGIDNSNINIIQGDS--LENDKFIKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             HHHHTTHHCBGCEEEES-T--TTSHSCTST--EEEEEEE--CTCE
T ss_pred             hhhhhcccccccccccccc--ccccccccccccccccCCCCcccc
Confidence            88766653  356999998  665543223689999999999975

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.46  E-value=7e-13  Score=115.24  Aligned_cols=84  Identities=19%  Similarity=0.233  Sum_probs=70.1

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ...+|.+|||+|||+|..+..++.... ..|+++|+++.+++.++.|+..+++ +++++.+|+  .+.......++||.|
T Consensus       241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~--~~~~~~~~~~~fD~V  317 (427)
T PRK10901        241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDA--RDPAQWWDGQPFDRI  317 (427)
T ss_pred             CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCc--ccchhhcccCCCCEE
Confidence            335788999999999999999888754 6999999999999999999999888 578999999  654321112689999


Q ss_pred             EEcCCCCC
Q psy17460        125 IMNPPFGT  132 (216)
Q Consensus       125 i~npp~~~  132 (216)
                      ++|||+..
T Consensus       318 l~D~Pcs~  325 (427)
T PRK10901        318 LLDAPCSA  325 (427)
T ss_pred             EECCCCCc
Confidence            99999864

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.46  E-value=4.9e-13  Score=105.19  Aligned_cols=77  Identities=26%  Similarity=0.342  Sum_probs=67.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .+|.+|||+|||-|.++..+|+.|+ .|+|+|+++.+++.|+..+...++ +++..+.++  .++....  ++||+|+|.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~--edl~~~~--~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATV--EDLASAG--GQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhH--HHHHhcC--CCccEEEEh
Confidence            5899999999999999999999996 999999999999999999999998 688999998  5555433  799999995


Q ss_pred             CCC
Q psy17460        128 PPF  130 (216)
Q Consensus       128 pp~  130 (216)
                      -..
T Consensus       132 EVl  134 (243)
T COG2227         132 EVL  134 (243)
T ss_pred             hHH
Confidence            443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.46  E-value=8.7e-13  Score=107.20  Aligned_cols=103  Identities=14%  Similarity=0.114  Sum_probs=77.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|.++..++..+. +|+|+|+++++++.|+.+....++. +++++.+|+  .++... ..++||+|+++
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~--~~l~~~-~~~~fD~V~~~  119 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA--QDIAQH-LETPVDLILFH  119 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH--HHHhhh-cCCCCCEEEeh
Confidence            567999999999999999999865 8999999999999999999887764 799999999  555321 12689999998


Q ss_pred             CCCCCC-CCCCCHHHHHHHhhcCCceEEE
Q psy17460        128 PPFGTR-NCGIDLAFVQYAADISKVVYSL  155 (216)
Q Consensus       128 pp~~~~-~~~~~~~~~~~~l~~~~~ly~~  155 (216)
                      ..+++. ++....+.+.+.+++++.+...
T Consensus       120 ~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        120 AVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             hHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            887655 3322334444555555554333

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.45  E-value=9.4e-13  Score=107.50  Aligned_cols=83  Identities=22%  Similarity=0.248  Sum_probs=70.3

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ..+|.+|||+|||+|..+..++...  .+.|+++|+++.+++.+++|++.+++.+++++.+|+  ..+....  +.||.|
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~--~~~~~~~--~~fD~V  144 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG--RVFGAAV--PKFDAI  144 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH--HHhhhhc--cCCCEE
Confidence            3578899999999999998877752  268999999999999999999999987899999999  6554322  579999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      ++|||+...
T Consensus       145 l~D~Pcsg~  153 (264)
T TIGR00446       145 LLDAPCSGE  153 (264)
T ss_pred             EEcCCCCCC
Confidence            999998754

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.45  E-value=5.6e-13  Score=91.20  Aligned_cols=95  Identities=17%  Similarity=0.194  Sum_probs=75.6

Q ss_pred             EEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         54 LDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        54 lD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      ||+|||+|..+..+++.+..+++++|+++++++.++++....+   +.++.+|+  .++++..  ++||+|+++-.+++.
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~---~~~~~~d~--~~l~~~~--~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG---VSFRQGDA--EDLPFPD--NSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST---EEEEESBT--TSSSS-T--T-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC---chheeehH--HhCcccc--ccccccccccceeec
Confidence            7999999999999999855799999999999999999886533   56999999  7777654  899999997766532


Q ss_pred             CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460        134 NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA  181 (216)
Q Consensus       134 ~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~  181 (216)
                                               .....+++.+.++|+| +|++++
T Consensus        74 -------------------------~~~~~~l~e~~rvLk~-gG~l~~   95 (95)
T PF08241_consen   74 -------------------------EDPEAALREIYRVLKP-GGRLVI   95 (95)
T ss_dssp             -------------------------SHHHHHHHHHHHHEEE-EEEEEE
T ss_pred             -------------------------cCHHHHHHHHHHHcCc-CeEEeC
Confidence                                     3456788889999999 998864

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>KOG1271|consensus

Probab=99.45  E-value=1.2e-11  Score=93.15  Aligned_cols=183  Identities=14%  Similarity=0.166  Sum_probs=120.5

Q ss_pred             HHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcC---CCCCC-EEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHH
Q psy17460         11 QQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYN---DIDGK-TVLDLGCGSGILTFGSILLGA-DFCFALECDKEIL   85 (216)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---~~~~~-~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~   85 (216)
                      .++ .+|+++--.=+.|.. +...+++++++.....   ..+.. +|||+|||.|.+...+++.+. ..++|+|-++.++
T Consensus        27 ~El-~Nfr~hgd~GEvWFg-~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV  104 (227)
T KOG1271|consen   27 LEL-TNFREHGDEGEVWFG-EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV  104 (227)
T ss_pred             HHH-hhcccCCCccceecC-CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHH
Confidence            455 666755444444443 5566667766665433   12333 999999999999999999876 6699999999999


Q ss_pred             HHHHHhhhHhCCCc-eEEEEecccccccccccccCcccEEEEcCCCCCC---------CCCCCHHHHHHHhhcCCceEEE
Q psy17460         86 DIFIDNKNEFEITN-CDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR---------NCGIDLAFVQYAADISKVVYSL  155 (216)
Q Consensus        86 ~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~---------~~~~~~~~~~~~l~~~~~ly~~  155 (216)
                      ++|+..++..+.++ |+|.+.|+  ....+..  ++||+|.-.-.|..+         +....+..+++.+.+++ ++.+
T Consensus       105 ~LA~niAe~~~~~n~I~f~q~DI--~~~~~~~--~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~g-ifvI  179 (227)
T KOG1271|consen  105 ELAQNIAERDGFSNEIRFQQLDI--TDPDFLS--GQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGG-IFVI  179 (227)
T ss_pred             HHHHHHHHhcCCCcceeEEEeec--cCCcccc--cceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCc-EEEE
Confidence            99999999999885 99999999  6643322  577777643333222         22334455666666555 7777


Q ss_pred             eeCc-chHHHHHHHHHhcCccceeeeeeeecCCCccccccccccceEEEEEEE
Q psy17460        156 HKTS-TRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLR  207 (216)
Q Consensus       156 ~~~~-~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  207 (216)
                      .+++ +..++.+.+...    +-.++...+.+   .|.|-.+...++....++
T Consensus       180 tSCN~T~dELv~~f~~~----~f~~~~tvp~p---tF~FgG~~G~tvt~vaF~  225 (227)
T KOG1271|consen  180 TSCNFTKDELVEEFENF----NFEYLSTVPTP---TFMFGGSVGSTVTSVAFL  225 (227)
T ss_pred             EecCccHHHHHHHHhcC----CeEEEEeeccc---eEEeccccccEEEEEEEe
Confidence            7776 677776555543    32333333332   777877776666655543

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=3.2e-12  Score=99.21  Aligned_cols=133  Identities=16%  Similarity=0.104  Sum_probs=101.8

Q ss_pred             cCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEE
Q psy17460         23 HLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDA  102 (216)
Q Consensus        23 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~  102 (216)
                      ..+|+.+..++...|+..+..    .++++|||+|||+|..+..+++... +|+++|+.+...+.|++|+...+..|+.+
T Consensus        50 ~~gqtis~P~~vA~m~~~L~~----~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v  124 (209)
T COG2518          50 GCGQTISAPHMVARMLQLLEL----KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTV  124 (209)
T ss_pred             CCCceecCcHHHHHHHHHhCC----CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEE
Confidence            356677777777777777655    5899999999999999999998854 99999999999999999999999989999


Q ss_pred             EEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        103 ILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       103 ~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      +++|.  ..-....  .+||.|++.......                               -+...+.|++ +|++++-
T Consensus       125 ~~gDG--~~G~~~~--aPyD~I~Vtaaa~~v-------------------------------P~~Ll~QL~~-gGrlv~P  168 (209)
T COG2518         125 RHGDG--SKGWPEE--APYDRIIVTAAAPEV-------------------------------PEALLDQLKP-GGRLVIP  168 (209)
T ss_pred             EECCc--ccCCCCC--CCcCEEEEeeccCCC-------------------------------CHHHHHhccc-CCEEEEE
Confidence            99999  5543332  799999986543211                               1123556688 9999998


Q ss_pred             eecCCCccc-ccccc
Q psy17460        183 MKYDLNQSY-KFHKK  196 (216)
Q Consensus       183 ~~~~~~~~~-~~~~~  196 (216)
                      .+....+.+ .+.+.
T Consensus       169 vG~~~~q~l~~~~k~  183 (209)
T COG2518         169 VGSGPAQRLLRITKD  183 (209)
T ss_pred             EccCCcEEEEEEEEc
Confidence            885555544 44443

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.44  E-value=2.8e-12  Score=104.06  Aligned_cols=110  Identities=16%  Similarity=0.144  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEK  110 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~  110 (216)
                      +.....+..+...+...+|++|||+|||.|.+++.+++....+|+|+++|+++.+.+++.+...|++ +++++..|.  .
T Consensus        55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~--r  132 (283)
T COG2230          55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY--R  132 (283)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc--c
Confidence            3334445566666677899999999999999999999885569999999999999999999999998 899999999  6


Q ss_pred             ccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhc
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADI  148 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~  148 (216)
                      ++.     ++||.|++--.|.+.....-..|++.+...
T Consensus       133 d~~-----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~  165 (283)
T COG2230         133 DFE-----EPFDRIVSVGMFEHVGKENYDDFFKKVYAL  165 (283)
T ss_pred             ccc-----cccceeeehhhHHHhCcccHHHHHHHHHhh
Confidence            665     679999998888776333333444444333

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.44  E-value=2e-12  Score=109.65  Aligned_cols=126  Identities=20%  Similarity=0.294  Sum_probs=86.9

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEI  107 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~  107 (216)
                      .......+.|+..+...+...++ .|||+.||+|.+++.++... .+|+|||+++++++.|+.|+..++++|++|+.+++
T Consensus       176 QvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  176 QVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             -SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             cCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            33446778888888877665555 79999999999999999885 49999999999999999999999999999999988


Q ss_pred             ccccccc------------ccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCc
Q psy17460        108 NEKSLDS------------SVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTS  159 (216)
Q Consensus       108 ~~~~~~~------------~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~  159 (216)
                      ++.....            ......+|+|+.|||    +.+.+...++.+..+.+.+|.-+.+.
T Consensus       254 ~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP----R~G~~~~~~~~~~~~~~ivYvSCnP~  313 (352)
T PF05958_consen  254 EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP----RAGLDEKVIELIKKLKRIVYVSCNPA  313 (352)
T ss_dssp             HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE-------TT-SCHHHHHHHHHSSEEEEEES-HH
T ss_pred             cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC----CCCchHHHHHHHhcCCeEEEEECCHH
Confidence            3321100            011136899999999    88888878887766543388777443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.44  E-value=1.4e-12  Score=105.54  Aligned_cols=79  Identities=18%  Similarity=0.259  Sum_probs=66.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc--C-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL--G-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~--~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ++.+|||+|||+|..+..+++.  . ..+++|+|+|++|++.|+.++...+.. +++++.+|+  .+.+.    ..+|+|
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~--~~~~~----~~~D~v  129 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI--RDIAI----ENASMV  129 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh--hhCCC----CCCCEE
Confidence            6779999999999999887762  2 369999999999999999999877765 799999999  77654    468999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      +++..++..
T Consensus       130 v~~~~l~~l  138 (247)
T PRK15451        130 VLNFTLQFL  138 (247)
T ss_pred             ehhhHHHhC
Confidence            998877654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.44  E-value=1.1e-12  Score=114.51  Aligned_cols=82  Identities=21%  Similarity=0.292  Sum_probs=69.8

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .++++|||+|||+|..+..++...  .++|+++|+++++++.+++|+..+++.+++++.+|+  .+...... ++||+|+
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~--~~~~~~~~-~~fD~Vl  325 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDA--RKVHEKFA-EKFDKIL  325 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCc--ccccchhc-ccCCEEE
Confidence            478899999999999999888752  479999999999999999999999987899999999  66532211 6899999


Q ss_pred             EcCCCCC
Q psy17460        126 MNPPFGT  132 (216)
Q Consensus       126 ~npp~~~  132 (216)
                      +|||+..
T Consensus       326 ~D~Pcsg  332 (444)
T PRK14902        326 VDAPCSG  332 (444)
T ss_pred             EcCCCCC
Confidence            9999764

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.44  E-value=1e-12  Score=109.71  Aligned_cols=99  Identities=16%  Similarity=0.158  Sum_probs=75.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++++++.|+.+....+.. +++++.+|+  .+++...  ++||+|+|
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da--e~l~~~~--~~FD~Vi~  204 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA--EKLADEG--RKFDAVLS  204 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH--HHhhhcc--CCCCEEEE
Confidence            4677999999999999998888765 8999999999999999887655432 799999999  6665432  68999999


Q ss_pred             cCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460        127 NPPFGTR-NCGIDLAFVQYAADISKV  151 (216)
Q Consensus       127 npp~~~~-~~~~~~~~~~~~l~~~~~  151 (216)
                      .-.+++. +...-.+.+.+.+++++.
T Consensus       205 ~~vLeHv~d~~~~L~~l~r~LkPGG~  230 (322)
T PLN02396        205 LEVIEHVANPAEFCKSLSALTIPNGA  230 (322)
T ss_pred             hhHHHhcCCHHHHHHHHHHHcCCCcE
Confidence            7766655 333334444555555554

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.43  E-value=5.2e-13  Score=104.82  Aligned_cols=81  Identities=15%  Similarity=0.090  Sum_probs=65.8

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc-cccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI-NEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|..+..++...+ .+|+|+|+++++++.++.++..+++++++++.+|+ +.......  .++||.|++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~--~~~~D~V~~  117 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP--DGSLDRIYL  117 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC--ccccceEEE
Confidence            567999999999999999887654 68999999999999999999888877899999999 32221121  268999999


Q ss_pred             cCCCC
Q psy17460        127 NPPFG  131 (216)
Q Consensus       127 npp~~  131 (216)
                      +.|..
T Consensus       118 ~~~~p  122 (202)
T PRK00121        118 NFPDP  122 (202)
T ss_pred             ECCCC
Confidence            86543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.43  E-value=4.6e-12  Score=99.16  Aligned_cols=94  Identities=24%  Similarity=0.420  Sum_probs=72.4

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCC-CceEEEE
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEI-TNCDAIL  104 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~  104 (216)
                      .|.++++...+..+    ...++.+|||+|||+|.+++.+++. ++ .+|+++|+++.+++.+++|+..+++ ++++++.
T Consensus        23 ~t~~~~r~~~l~~l----~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~   98 (198)
T PRK00377         23 MTKEEIRALALSKL----RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK   98 (198)
T ss_pred             CCHHHHHHHHHHHc----CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE
Confidence            45556654444433    4457889999999999999998764 33 6999999999999999999998884 4899999


Q ss_pred             ecccccccccccccCcccEEEEcC
Q psy17460        105 FEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus       105 ~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      +|+  .+..... .+.||+|+++.
T Consensus        99 ~d~--~~~l~~~-~~~~D~V~~~~  119 (198)
T PRK00377         99 GEA--PEILFTI-NEKFDRIFIGG  119 (198)
T ss_pred             ech--hhhHhhc-CCCCCEEEECC
Confidence            999  6543221 15899999965

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.43  E-value=1.8e-12  Score=110.13  Aligned_cols=83  Identities=23%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEeccccccccccc--ccCcccEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSV--FKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~--~~~~~D~v  124 (216)
                      .|++|||++|-||.+++.++..|+.+|++||+|..+++.|++|+..|++.  .+.++++|+  .++....  .+.+||+|
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dv--f~~l~~~~~~g~~fDlI  294 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDV--FKWLRKAERRGEKFDLI  294 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhH--HHHHHHHHhcCCcccEE
Confidence            58999999999999999999999999999999999999999999999986  589999999  9886542  33589999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      |+|||=...
T Consensus       295 ilDPPsF~r  303 (393)
T COG1092         295 ILDPPSFAR  303 (393)
T ss_pred             EECCccccc
Confidence            999997665

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.43  E-value=3.7e-12  Score=108.37  Aligned_cols=131  Identities=16%  Similarity=0.247  Sum_probs=95.0

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE  109 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  109 (216)
                      .....+.+++.+...+.. .+.+|||++||+|.+++.++.. +.+|+|+|+++.+++.+++|+..+++++++++.+|+  
T Consensus       188 N~~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~--  263 (362)
T PRK05031        188 NAAVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA--  263 (362)
T ss_pred             CHHHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH--
Confidence            445678888887765432 2357999999999999988776 459999999999999999999999988899999999  


Q ss_pred             cccccccc--------------cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460        110 KSLDSSVF--------------KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus       110 ~~~~~~~~--------------~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~  171 (216)
                      .+......              ..+||+||.|||+    .+...+.+....++.+.+|.-+..   ..+.+....+
T Consensus       264 ~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR----~G~~~~~l~~l~~~~~ivyvSC~p---~tlarDl~~L  332 (362)
T PRK05031        264 EEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR----AGLDDETLKLVQAYERILYISCNP---ETLCENLETL  332 (362)
T ss_pred             HHHHHHHhhcccccccccccccCCCCCEEEECCCC----CCCcHHHHHHHHccCCEEEEEeCH---HHHHHHHHHH
Confidence            55431110              1258999999995    455666666666643337766644   3444434433

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.42  E-value=3e-12  Score=105.75  Aligned_cols=78  Identities=22%  Similarity=0.295  Sum_probs=67.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.+++++...++ ++++..+|+  ......   ++||+|+++.
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~--~~~~~~---~~fD~I~~~~  192 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDI--NSASIQ---EEYDFILSTV  192 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEech--hccccc---CCccEEEEcc
Confidence            455999999999999999999875 899999999999999999988888 899999999  554432   7999999988


Q ss_pred             CCCCC
Q psy17460        129 PFGTR  133 (216)
Q Consensus       129 p~~~~  133 (216)
                      .++..
T Consensus       193 vl~~l  197 (287)
T PRK12335        193 VLMFL  197 (287)
T ss_pred             hhhhC
Confidence            76643

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.42  E-value=3.8e-12  Score=111.20  Aligned_cols=82  Identities=20%  Similarity=0.190  Sum_probs=69.9

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ..+|++|||+|||+|..+..++...  ..+|+++|+++.+++.++.+++..++++++++.+|+  ..+...   ++||+|
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da--~~~~~~---~~fD~V  322 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA--RSFSPE---EQPDAI  322 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc--cccccC---CCCCEE
Confidence            3578899999999999998877642  368999999999999999999999987899999999  665432   689999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      ++|||+...
T Consensus       323 l~D~Pcsg~  331 (445)
T PRK14904        323 LLDAPCTGT  331 (445)
T ss_pred             EEcCCCCCc
Confidence            999998543

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.42  E-value=1e-12  Score=109.34  Aligned_cols=83  Identities=17%  Similarity=0.125  Sum_probs=63.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHh-CCC-ceEEEEe-cccccccccc--cccCccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEF-EIT-NCDAILF-EINEKSLDSS--VFKQKVD  122 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~-~~~-~v~~~~~-d~~~~~~~~~--~~~~~~D  122 (216)
                      .+.++||+|||+|.+...++.. ...+++|+|+|+.+++.|+.|+..+ ++. +++++.. |.  ..+...  ...+.||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~--~~i~~~i~~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDS--KAIFKGIIHKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccch--hhhhhcccccCCceE
Confidence            4679999999999887666554 3379999999999999999999999 676 6887643 33  222111  1126899


Q ss_pred             EEEEcCCCCCC
Q psy17460        123 TVIMNPPFGTR  133 (216)
Q Consensus       123 ~vi~npp~~~~  133 (216)
                      +|+|||||+..
T Consensus       192 livcNPPf~~s  202 (321)
T PRK11727        192 ATLCNPPFHAS  202 (321)
T ss_pred             EEEeCCCCcCc
Confidence            99999999976

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.42  E-value=7.2e-13  Score=92.49  Aligned_cols=76  Identities=21%  Similarity=0.235  Sum_probs=60.6

Q ss_pred             EEEecCCCCHhHHHHhHcC---C-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE-c
Q psy17460         53 VLDLGCGSGILTFGSILLG---A-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM-N  127 (216)
Q Consensus        53 vlD~g~GtG~~~~~~~~~~---~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~-n  127 (216)
                      |||+|||+|..+..++...   + .+++|+|+|+++++.++++....+. +++++++|+  .+++...  ++||+|++ .
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~--~~l~~~~--~~~D~v~~~~   75 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADA--RDLPFSD--GKFDLVVCSG   75 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCT--TCHHHHS--SSEEEEEE-T
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCH--hHCcccC--CCeeEEEEcC
Confidence            7999999999999988763   3 7999999999999999999988766 899999999  7766443  79999999 3


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      ..+++.
T Consensus        76 ~~~~~~   81 (101)
T PF13649_consen   76 LSLHHL   81 (101)
T ss_dssp             TGGGGS
T ss_pred             CccCCC
Confidence            435433

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.42  E-value=2.1e-12  Score=112.21  Aligned_cols=85  Identities=14%  Similarity=0.211  Sum_probs=71.3

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...+|.+|||+|||+|..+..++...  ..+|+++|+++.+++.++.|+...++++++++.+|+  ..++.. ..++||.
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da--~~l~~~-~~~~fD~  310 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA--ERLTEY-VQDTFDR  310 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch--hhhhhh-hhccCCE
Confidence            34578899999999999998888752  379999999999999999999999987899999999  665411 1268999


Q ss_pred             EEEcCCCCCC
Q psy17460        124 VIMNPPFGTR  133 (216)
Q Consensus       124 vi~npp~~~~  133 (216)
                      |++|||+...
T Consensus       311 Vl~DaPCsg~  320 (431)
T PRK14903        311 ILVDAPCTSL  320 (431)
T ss_pred             EEECCCCCCC
Confidence            9999999654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.41  E-value=2e-12  Score=118.58  Aligned_cols=108  Identities=20%  Similarity=0.305  Sum_probs=81.2

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCC-CCCCEEEEecCCCCHhHHHHhHcC-------------------------------
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYND-IDGKTVLDLGCGSGILTFGSILLG-------------------------------   71 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~vlD~g~GtG~~~~~~~~~~-------------------------------   71 (216)
                      +.++.++..+.+.++..+...... .++..++|++||+|++.++++...                               
T Consensus       164 yr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~  243 (702)
T PRK11783        164 YRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEE  243 (702)
T ss_pred             CccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHH
Confidence            333333344555555555544444 457899999999999999877521                               


Q ss_pred             ------------CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         72 ------------ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        72 ------------~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                                  ..+++|+|+++.+++.|+.|+..+++. .+++..+|+  .+++.....++||+|++||||+..
T Consensus       244 a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~--~~~~~~~~~~~~d~IvtNPPYg~r  316 (702)
T PRK11783        244 AQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV--ADLKNPLPKGPTGLVISNPPYGER  316 (702)
T ss_pred             HHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh--hhcccccccCCCCEEEECCCCcCc
Confidence                        126999999999999999999999986 599999999  666543222579999999999976

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.41  E-value=2.8e-12  Score=111.74  Aligned_cols=85  Identities=15%  Similarity=0.240  Sum_probs=70.8

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCcc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKV  121 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~  121 (216)
                      ...+|.+|||+|||+|..+..++.. + .++|+++|+++.+++.++.|+..+++++++++.+|+  ...+..  ...++|
T Consensus       249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~--~~~~~~~~~~~~~f  326 (434)
T PRK14901        249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS--RNLLELKPQWRGYF  326 (434)
T ss_pred             CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh--hhcccccccccccC
Confidence            3457899999999999999988875 3 368999999999999999999999988899999999  665411  112689


Q ss_pred             cEEEEcCCCCC
Q psy17460        122 DTVIMNPPFGT  132 (216)
Q Consensus       122 D~vi~npp~~~  132 (216)
                      |.|++|||+..
T Consensus       327 D~Vl~DaPCSg  337 (434)
T PRK14901        327 DRILLDAPCSG  337 (434)
T ss_pred             CEEEEeCCCCc
Confidence            99999999754

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.41  E-value=3.3e-12  Score=104.24  Aligned_cols=80  Identities=13%  Similarity=0.026  Sum_probs=64.1

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ...++.+|||+|||+|..+..++.....+|+|+|+++++++.++.+....  .++.++.+|+  .+.++..  ++||+|+
T Consensus        49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--~~i~~~~~D~--~~~~~~~--~~FD~V~  122 (263)
T PTZ00098         49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--NKIEFEANDI--LKKDFPE--NTFDMIY  122 (263)
T ss_pred             CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--CceEEEECCc--ccCCCCC--CCeEEEE
Confidence            34578899999999999998887653459999999999999999987542  2799999999  6655433  6899999


Q ss_pred             EcCCCC
Q psy17460        126 MNPPFG  131 (216)
Q Consensus       126 ~npp~~  131 (216)
                      +...+.
T Consensus       123 s~~~l~  128 (263)
T PTZ00098        123 SRDAIL  128 (263)
T ss_pred             EhhhHH
Confidence            965543

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=99.40  E-value=3.7e-12  Score=113.53  Aligned_cols=109  Identities=23%  Similarity=0.362  Sum_probs=82.1

Q ss_pred             cCccccCCHHHHHHHHHHHHhhcCC---CCCCEEEEecCCCCHhHHHHhHcCC---------CEEEEEeCChHHHHHHHH
Q psy17460         23 HLEQYHTPPHLAATILHTIQNNYND---IDGKTVLDLGCGSGILTFGSILLGA---------DFCFALECDKEILDIFID   90 (216)
Q Consensus        23 ~~~~~~t~~~~~~~~~~~~~~~~~~---~~~~~vlD~g~GtG~~~~~~~~~~~---------~~v~~iD~~~~~~~~~~~   90 (216)
                      ..|||.||..+++.|+..+......   ..+.+|||+|||+|.+...++....         ..++|+|+++.++..++.
T Consensus         2 ~~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~   81 (524)
T TIGR02987         2 AYGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK   81 (524)
T ss_pred             CCcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence            4789999999999999988653221   1346899999999999988765421         478999999999999999


Q ss_pred             hhhHhCCCceEEEEeccccccccc---ccccCcccEEEEcCCCCCC
Q psy17460         91 NKNEFEITNCDAILFEINEKSLDS---SVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        91 ~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~~~D~vi~npp~~~~  133 (216)
                      ++...+...+++..+|.  .....   ....+.||+|++||||...
T Consensus        82 ~l~~~~~~~~~i~~~d~--l~~~~~~~~~~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987        82 LLGEFALLEINVINFNS--LSYVLLNIESYLDLFDIVITNPPYGRL  125 (524)
T ss_pred             HHhhcCCCCceeeeccc--ccccccccccccCcccEEEeCCCcccc
Confidence            98766522466777776  43221   1112589999999999975

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.40  E-value=7.9e-12  Score=98.32  Aligned_cols=136  Identities=18%  Similarity=0.184  Sum_probs=93.4

Q ss_pred             ccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEE
Q psy17460         25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDA  102 (216)
Q Consensus        25 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~  102 (216)
                      ++..+.+.+...++..+.    ..+|.+|||+|||+|..+..++.. ++ ..|+++|+++.+.+.|++++...+..|+.+
T Consensus        52 ~~~is~P~~~a~~l~~L~----l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~  127 (209)
T PF01135_consen   52 GQTISAPSMVARMLEALD----LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEV  127 (209)
T ss_dssp             TEEE--HHHHHHHHHHTT----C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEE
T ss_pred             eeechHHHHHHHHHHHHh----cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeE
Confidence            344445556666665554    458999999999999999887775 54 579999999999999999999999889999


Q ss_pred             EEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        103 ILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       103 ~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      +.+|.  ..-....  .+||.|+++......                               -....+.|++ +|+++.-
T Consensus       128 ~~gdg--~~g~~~~--apfD~I~v~~a~~~i-------------------------------p~~l~~qL~~-gGrLV~p  171 (209)
T PF01135_consen  128 VVGDG--SEGWPEE--APFDRIIVTAAVPEI-------------------------------PEALLEQLKP-GGRLVAP  171 (209)
T ss_dssp             EES-G--GGTTGGG---SEEEEEESSBBSS---------------------------------HHHHHTEEE-EEEEEEE
T ss_pred             EEcch--hhccccC--CCcCEEEEeeccchH-------------------------------HHHHHHhcCC-CcEEEEE
Confidence            99999  5543332  689999997654211                               1123455689 9999986


Q ss_pred             eecCCCccc-cccccccce
Q psy17460        183 MKYDLNQSY-KFHKKSLHD  200 (216)
Q Consensus       183 ~~~~~~~~~-~~~~~~~~~  200 (216)
                      .+-...+.+ .+.+.....
T Consensus       172 i~~~~~~~l~~~~k~~~g~  190 (209)
T PF01135_consen  172 IGQGGSQRLVRITKKGDGE  190 (209)
T ss_dssp             ESSSSSEEEEEEEEETTTE
T ss_pred             EccCCceEEEEEEEeCCCc
Confidence            665433433 566655343

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PLN03075 nicotianamine synthase; Provisional

Probab=99.40  E-value=3.7e-11  Score=98.58  Aligned_cols=140  Identities=11%  Similarity=0.058  Sum_probs=93.6

Q ss_pred             cccCCCcccCccccCCHHHH---HHHHHHHHhhcCCCCCCEEEEecCCCCHhH-HH-HhHcCC-CEEEEEeCChHHHHHH
Q psy17460         15 FNFSNPKVHLEQYHTPPHLA---ATILHTIQNNYNDIDGKTVLDLGCGSGILT-FG-SILLGA-DFCFALECDKEILDIF   88 (216)
Q Consensus        15 ~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~-~~-~~~~~~-~~v~~iD~~~~~~~~~   88 (216)
                      -...+|...+..||--..+.   ......+... ...++++|+|+|||.|.++ +. ++...+ ++++|+|+|+++++.|
T Consensus        87 ~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~-~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~A  165 (296)
T PLN03075         87 GSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQH-VNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVA  165 (296)
T ss_pred             hcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHh-hcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHH
Confidence            45566766666666655433   2222333222 2237789999999988554 33 334444 7899999999999999


Q ss_pred             HHhhhH-hCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHH
Q psy17460         89 IDNKNE-FEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILK  166 (216)
Q Consensus        89 ~~~~~~-~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~  166 (216)
                      ++++.. .++. +++|..+|+  .+.....  +.||+|++. ..+.+++                       .+...+++
T Consensus       166 r~~~~~~~gL~~rV~F~~~Da--~~~~~~l--~~FDlVF~~-ALi~~dk-----------------------~~k~~vL~  217 (296)
T PLN03075        166 RRLVSSDPDLSKRMFFHTADV--MDVTESL--KEYDVVFLA-ALVGMDK-----------------------EEKVKVIE  217 (296)
T ss_pred             HHHhhhccCccCCcEEEECch--hhccccc--CCcCEEEEe-ccccccc-----------------------ccHHHHHH
Confidence            999964 6665 699999999  7654222  689999997 5443321                       23456666


Q ss_pred             HHHHhcCccceeeeeeee
Q psy17460        167 KIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       167 ~~~~~l~~~~g~~~~~~~  184 (216)
                      ...+.|+| +|.+++..+
T Consensus       218 ~l~~~LkP-GG~Lvlr~~  234 (296)
T PLN03075        218 HLGKHMAP-GALLMLRSA  234 (296)
T ss_pred             HHHHhcCC-CcEEEEecc
Confidence            67777777 777777653

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.39  E-value=7.1e-12  Score=102.72  Aligned_cols=101  Identities=24%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ..++++|||+|||+|..+..+++. ++ .+|+++|+++++++.++++....+..+++++.+|+  .+++...  ++||+|
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~--~~l~~~~--~~fD~V  150 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI--EALPVAD--NSVDVI  150 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch--hhCCCCC--CceeEE
Confidence            347889999999999988766654 44 58999999999999999999888877899999999  6665433  689999


Q ss_pred             EEcCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460        125 IMNPPFGTR-NCGIDLAFVQYAADISKV  151 (216)
Q Consensus       125 i~npp~~~~-~~~~~~~~~~~~l~~~~~  151 (216)
                      +++..+++. +.....+.+.+++++++.
T Consensus       151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~  178 (272)
T PRK11873        151 ISNCVINLSPDKERVFKEAFRVLKPGGR  178 (272)
T ss_pred             EEcCcccCCCCHHHHHHHHHHHcCCCcE
Confidence            999877654 222223344455555554

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.39  E-value=3.8e-12  Score=99.32  Aligned_cols=106  Identities=14%  Similarity=0.116  Sum_probs=78.7

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-cccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-VFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~D~vi~  126 (216)
                      ...+|||+|||+|.++..++...+ .+++|+|+++.+++.|+.++...++.|++++.+|+  .+++.. ...+++|.|++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~--~~~~~~~~~~~~~d~v~~   93 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA--NELLDKFFPDGSLSKVFL   93 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH--HHHHHhhCCCCceeEEEE
Confidence            456899999999999999888755 79999999999999999999888887999999999  654321 11258999999


Q ss_pred             cCCCCCCC------CCCC---HHHHHHHhhcCCceEEEe
Q psy17460        127 NPPFGTRN------CGID---LAFVQYAADISKVVYSLH  156 (216)
Q Consensus       127 npp~~~~~------~~~~---~~~~~~~l~~~~~ly~~~  156 (216)
                      |+|-.+..      +...   .+.+.+++++++.++...
T Consensus        94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091        94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence            98755431      1112   233455566666555444

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.39  E-value=1.6e-11  Score=94.88  Aligned_cols=79  Identities=18%  Similarity=0.215  Sum_probs=62.9

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.++||+|||.|..++.++++|. .|+++|+|+..++.++..+...++ +++....|+  .+....   +.||+|++.
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl--~~~~~~---~~yD~I~st  101 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL-DIRTRVADL--NDFDFP---EEYDFIVST  101 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BG--CCBS-T---TTEEEEEEE
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecc--hhcccc---CCcCEEEEE
Confidence            4677999999999999999999997 899999999999999999988888 699999999  555443   689999986


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      -.|...
T Consensus       102 ~v~~fL  107 (192)
T PF03848_consen  102 VVFMFL  107 (192)
T ss_dssp             SSGGGS
T ss_pred             EEeccC
Confidence            555443

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.39  E-value=7.5e-12  Score=106.14  Aligned_cols=130  Identities=15%  Similarity=0.239  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccc
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEK  110 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  110 (216)
                      ....+.++..+...+.. .+.+|||+|||+|.+++.++... .+|+|+|+++++++.+++|+..+++++++++.+|+  .
T Consensus       180 ~~~~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~--~  255 (353)
T TIGR02143       180 AAVNIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSA--E  255 (353)
T ss_pred             HHHHHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCH--H
Confidence            34567777776655332 23479999999999999888774 59999999999999999999999988899999999  5


Q ss_pred             cccccc---------c-----cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460        111 SLDSSV---------F-----KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus       111 ~~~~~~---------~-----~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~  171 (216)
                      ++....         .     ...||+|+.|||    +.+...+.++...++.+.+|.-+..   ..+.+....+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP----R~G~~~~~l~~l~~~~~ivYvsC~p---~tlaRDl~~L  323 (353)
T TIGR02143       256 EFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP----RAGLDPDTCKLVQAYERILYISCNP---ETLKANLEQL  323 (353)
T ss_pred             HHHHHHhhccccccccccccccCCCCEEEECCC----CCCCcHHHHHHHHcCCcEEEEEcCH---HHHHHHHHHH
Confidence            543210         0     124899999999    4566666777666643337777643   4444444444

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.38  E-value=3.6e-11  Score=93.91  Aligned_cols=95  Identities=18%  Similarity=0.259  Sum_probs=72.1

Q ss_pred             cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEE
Q psy17460         26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAIL  104 (216)
Q Consensus        26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~  104 (216)
                      ...|+..+...++..+..    .++.+|||+|||+|.++..++...+ .+|+++|+|+++++.+++|+..++..+++++.
T Consensus        21 ~p~t~~~v~~~l~~~l~~----~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~   96 (196)
T PRK07402         21 IPLTKREVRLLLISQLRL----EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIE   96 (196)
T ss_pred             CCCCHHHHHHHHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            346666777666665532    4678999999999999998886543 79999999999999999999988877899999


Q ss_pred             ecccccccccccccCcccEEEEc
Q psy17460        105 FEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus       105 ~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      +|+  .+..... ...+|.++.+
T Consensus        97 ~d~--~~~~~~~-~~~~d~v~~~  116 (196)
T PRK07402         97 GSA--PECLAQL-APAPDRVCIE  116 (196)
T ss_pred             Cch--HHHHhhC-CCCCCEEEEE
Confidence            999  5422111 1345777664

>PRK06922 hypothetical protein; Provisional

Probab=99.38  E-value=4.9e-12  Score=112.77  Aligned_cols=121  Identities=16%  Similarity=0.154  Sum_probs=84.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|..+..++...+ .+++|+|+|+.|++.|+.+....+. +++++.+|+  .+++.....++||+|++
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa--~dLp~~fedeSFDvVVs  493 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDA--INLSSSFEKESVDTIVY  493 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcch--HhCccccCCCCEEEEEE
Confidence            4678999999999999888877544 7999999999999999998766554 788999999  66652222378999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      ++++|...         .-+...+.   .+.......+++.+.+.|+| +|.+++..+
T Consensus       494 n~vLH~L~---------syIp~~g~---~f~~edl~kiLreI~RVLKP-GGrLII~D~  538 (677)
T PRK06922        494 SSILHELF---------SYIEYEGK---KFNHEVIKKGLQSAYEVLKP-GGRIIIRDG  538 (677)
T ss_pred             chHHHhhh---------hhcccccc---cccHHHHHHHHHHHHHHcCC-CcEEEEEeC
Confidence            99887430         00000000   00112345666677777788 777777544

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.38  E-value=3.5e-12  Score=103.57  Aligned_cols=102  Identities=21%  Similarity=0.284  Sum_probs=83.3

Q ss_pred             CCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460         19 NPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI   97 (216)
Q Consensus        19 ~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~   97 (216)
                      .++..++| |.....+.+.++..+..    .++.+|||+|||+|.++..++..+. .++++|+|+.+++.++.+...  .
T Consensus         2 ~~~k~~gq~fl~d~~i~~~i~~~~~~----~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~   74 (253)
T TIGR00755         2 RPRKSLGQNFLIDESVIQKIVEAANV----LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--Y   74 (253)
T ss_pred             CCCCCCCCccCCCHHHHHHHHHhcCC----CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--C
Confidence            46778888 66777888888776643    3688999999999999999999875 799999999999999987754  2


Q ss_pred             CceEEEEecccccccccccccCccc---EEEEcCCCCCC
Q psy17460         98 TNCDAILFEINEKSLDSSVFKQKVD---TVIMNPPFGTR  133 (216)
Q Consensus        98 ~~v~~~~~d~~~~~~~~~~~~~~~D---~vi~npp~~~~  133 (216)
                      .+++++.+|+  .+.+..    .+|   .|++|+||+..
T Consensus        75 ~~v~v~~~D~--~~~~~~----~~d~~~~vvsNlPy~i~  107 (253)
T TIGR00755        75 ERLEVIEGDA--LKVDLP----DFPKQLKVVSNLPYNIS  107 (253)
T ss_pred             CcEEEEECch--hcCChh----HcCCcceEEEcCChhhH
Confidence            3899999999  776643    456   99999999853

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.38  E-value=7.6e-12  Score=101.39  Aligned_cols=70  Identities=33%  Similarity=0.474  Sum_probs=56.8

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|.+++.+++.++.+|+|+|+|+.+++.|+.|+..+++. .+.+..+|            .+||+|++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~------------~~fD~Vva  185 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD------------LKADVIVA  185 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC------------CCcCEEEE
Confidence            468899999999999999888888777999999999999999999887762 33332221            27999999


Q ss_pred             cCC
Q psy17460        127 NPP  129 (216)
Q Consensus       127 npp  129 (216)
                      |..
T Consensus       186 ni~  188 (250)
T PRK00517        186 NIL  188 (250)
T ss_pred             cCc
Confidence            863

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.38  E-value=5e-12  Score=109.89  Aligned_cols=85  Identities=15%  Similarity=0.181  Sum_probs=67.8

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ..+|.+|||+|||+|..+..++... .++|+++|+++++++.++.|++..++. .+.+..+|.  .........++||.|
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~--~~~~~~~~~~~fD~V  313 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG--RGPSQWAENEQFDRI  313 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc--ccccccccccccCEE
Confidence            3578999999999999999888763 379999999999999999999998885 344477777  544321112689999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      ++|||+...
T Consensus       314 llDaPcSg~  322 (426)
T TIGR00563       314 LLDAPCSAT  322 (426)
T ss_pred             EEcCCCCCC
Confidence            999998764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00740 methyltransferase, putative

Probab=99.37  E-value=2e-11  Score=98.23  Aligned_cols=79  Identities=14%  Similarity=0.225  Sum_probs=65.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC---CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG---ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~---~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ++.+|||+|||+|..+..+++..   ..+++|+|+++++++.|+.++...+.. +++++.+|+  .+.+.    ..+|+|
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~--~~~~~----~~~d~v  126 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI--RHVEI----KNASMV  126 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECCh--hhCCC----CCCCEE
Confidence            66799999999999998888752   368999999999999999998776543 789999999  77664    368999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      +++-.+++.
T Consensus       127 ~~~~~l~~~  135 (239)
T TIGR00740       127 ILNFTLQFL  135 (239)
T ss_pred             eeecchhhC
Confidence            988776654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.36  E-value=1.4e-11  Score=104.51  Aligned_cols=84  Identities=13%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ..+..+||+|||+|.++..+|...+ ..++|+|+++.+++.+..++...+++|+.++.+|+  ..+......+++|.|++
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA--~~ll~~~~~~s~D~I~l  198 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDA--RLLLELLPSNSVEKIFV  198 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH--HHhhhhCCCCceeEEEE
Confidence            4567999999999999999998765 79999999999999999999998988999999999  55422222379999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      |.|..+.
T Consensus       199 nFPdPW~  205 (390)
T PRK14121        199 HFPVPWD  205 (390)
T ss_pred             eCCCCcc
Confidence            9887665

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.35  E-value=6.8e-12  Score=102.73  Aligned_cols=83  Identities=19%  Similarity=0.202  Sum_probs=65.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccc-cccCcccEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSS-VFKQKVDTVI  125 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~-~~~~~~D~vi  125 (216)
                      .|++|||++|-||.+++.++..|+.+|++||.|..+++.++.|+..|+++  +++++.+|+  .++... ...++||+||
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dv--f~~l~~~~~~~~fD~II  200 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDV--FKFLKRLKKGGRFDLII  200 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-H--HHHHHHHHHTT-EEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH--HHHHHHHhcCCCCCEEE
Confidence            68899999999999999999999889999999999999999999999975  699999999  875432 2336999999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      +|||=...
T Consensus       201 lDPPsF~k  208 (286)
T PF10672_consen  201 LDPPSFAK  208 (286)
T ss_dssp             E--SSEES
T ss_pred             ECCCCCCC
Confidence            99995543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.35  E-value=2.2e-11  Score=107.30  Aligned_cols=81  Identities=12%  Similarity=0.115  Sum_probs=65.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|..+..++.....+|+|+|+|++++..|+.+...... +++++.+|+  .+.+...  ++||+|+|.
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~-~v~~~~~d~--~~~~~~~--~~fD~I~s~  339 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKC-SVEFEVADC--TKKTYPD--NSFDVIYSR  339 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCC-ceEEEEcCc--ccCCCCC--CCEEEEEEC
Confidence            46789999999999999888876445899999999999999988753332 799999999  6665432  689999998


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      ..+.+.
T Consensus       340 ~~l~h~  345 (475)
T PLN02336        340 DTILHI  345 (475)
T ss_pred             Cccccc
Confidence            776654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.34  E-value=1.9e-11  Score=96.09  Aligned_cols=93  Identities=13%  Similarity=-0.021  Sum_probs=73.6

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+++++.|+.+..     +++++.+|+  .+ +...  ++||+|+++
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----~~~~~~~d~--~~-~~~~--~sfD~V~~~  112 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----NINIIQGSL--FD-PFKD--NFFDLVLTK  112 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----CCcEEEeec--cC-CCCC--CCEEEEEEC
Confidence            5678999999999999988876 34689999999999999988653     577889999  66 4332  799999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      -.+++.++..-.+.+.++.+..+.
T Consensus       113 ~vL~hl~p~~~~~~l~el~r~~~~  136 (204)
T TIGR03587       113 GVLIHINPDNLPTAYRELYRCSNR  136 (204)
T ss_pred             ChhhhCCHHHHHHHHHHHHhhcCc
Confidence            988776544445667777777665

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.34  E-value=2.6e-12  Score=99.24  Aligned_cols=78  Identities=15%  Similarity=0.115  Sum_probs=69.1

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      +.....+|.|+|||+|..+..++++.+ +.++|+|.|++|++.|+..+-     +++|..+|+  .++...   .+.|++
T Consensus        27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-----~~~f~~aDl--~~w~p~---~~~dll   96 (257)
T COG4106          27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-----DATFEEADL--RTWKPE---QPTDLL   96 (257)
T ss_pred             CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-----CCceecccH--hhcCCC---Cccchh
Confidence            445778999999999999999999876 899999999999999977654     789999999  888765   689999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      |+|..|++.
T Consensus        97 faNAvlqWl  105 (257)
T COG4106          97 FANAVLQWL  105 (257)
T ss_pred             hhhhhhhhc
Confidence            999999887

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.33  E-value=1.7e-11  Score=97.96  Aligned_cols=77  Identities=23%  Similarity=0.225  Sum_probs=64.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .+.+|||+|||+|.++..++..++ .+++++|+++.+++.++.....    ++.++.+|+  .+.+...  ++||+|+++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~----~~~~~~~d~--~~~~~~~--~~fD~vi~~  105 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE----NVQFICGDA--EKLPLED--SSFDLIVSN  105 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC----CCeEEecch--hhCCCCC--CceeEEEEh
Confidence            457899999999999999988875 6799999999999999887652    788999999  6665433  689999998


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      ..+++.
T Consensus       106 ~~l~~~  111 (240)
T TIGR02072       106 LALQWC  111 (240)
T ss_pred             hhhhhc
Confidence            877655

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.31  E-value=5.7e-11  Score=101.76  Aligned_cols=112  Identities=14%  Similarity=0.124  Sum_probs=81.4

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc
Q psy17460         37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV  116 (216)
Q Consensus        37 ~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  116 (216)
                      .+..+...+...++.+|||+|||+|.++..+++....+|+|+|+|+++++.++++..  +. ++++..+|+  .+..   
T Consensus       155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~--~~l~---  226 (383)
T PRK11705        155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDY--RDLN---  226 (383)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECch--hhcC---
Confidence            334444444556788999999999999998887644599999999999999999874  33 588888998  5542   


Q ss_pred             ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        117 FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                        ++||.|++...+.+...                       .....+++.+.++|+| +|.+++.
T Consensus       227 --~~fD~Ivs~~~~ehvg~-----------------------~~~~~~l~~i~r~Lkp-GG~lvl~  266 (383)
T PRK11705        227 --GQFDRIVSVGMFEHVGP-----------------------KNYRTYFEVVRRCLKP-DGLFLLH  266 (383)
T ss_pred             --CCCCEEEEeCchhhCCh-----------------------HHHHHHHHHHHHHcCC-CcEEEEE
Confidence              68999999876654310                       1123455566777777 7776663

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=2.1e-11  Score=98.06  Aligned_cols=104  Identities=21%  Similarity=0.308  Sum_probs=83.7

Q ss_pred             CcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC
Q psy17460         20 PKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT   98 (216)
Q Consensus        20 ~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~   98 (216)
                      ++..+|| |-....+...++..+..    .+++.|||+|+|.|.++..+++.++ +|+++|+|+.++...++.....+  
T Consensus         4 ~~K~~GQnFL~d~~v~~kIv~~a~~----~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~--   76 (259)
T COG0030           4 PNKRLGQNFLIDKNVIDKIVEAANI----SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYD--   76 (259)
T ss_pred             CCCCcccccccCHHHHHHHHHhcCC----CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccccc--
Confidence            3466787 66666777777766654    3688999999999999999999976 89999999999999998876333  


Q ss_pred             ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      |++++.+|+  ....+... ..++.|++|.||...
T Consensus        77 n~~vi~~Da--Lk~d~~~l-~~~~~vVaNlPY~Is  108 (259)
T COG0030          77 NLTVINGDA--LKFDFPSL-AQPYKVVANLPYNIS  108 (259)
T ss_pred             ceEEEeCch--hcCcchhh-cCCCEEEEcCCCccc
Confidence            899999999  77665410 178999999999865

>KOG1270|consensus

Probab=99.30  E-value=1.1e-11  Score=98.47  Aligned_cols=75  Identities=21%  Similarity=0.396  Sum_probs=59.1

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC------ceEEEEecccccccccccccCcccE
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT------NCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~------~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      |++|||+|||+|.++..+++.|+ +|.|||+++.+++.|+.........      ++++...|+  ....     ++||+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~--E~~~-----~~fDa  161 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV--EGLT-----GKFDA  161 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch--hhcc-----cccce
Confidence            58899999999999999999986 9999999999999999985544332      255666666  3333     57999


Q ss_pred             EEEcCCCCC
Q psy17460        124 VIMNPPFGT  132 (216)
Q Consensus       124 vi~npp~~~  132 (216)
                      |+|--.+++
T Consensus       162 VvcsevleH  170 (282)
T KOG1270|consen  162 VVCSEVLEH  170 (282)
T ss_pred             eeeHHHHHH
Confidence            999655443

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.30  E-value=2.4e-11  Score=96.66  Aligned_cols=77  Identities=14%  Similarity=0.062  Sum_probs=63.8

Q ss_pred             CEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460         51 KTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++|||+|||+|..+..+++..+ .+++|+|+|+++++.++.++...++. +++++.+|+  ...+..   ++||+|++.-
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~--~~~~~~---~~fD~I~~~~   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS--AKDPFP---DTYDLVFGFE   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc--ccCCCC---CCCCEeehHH
Confidence            4799999999999988887653 68999999999999999999887765 689999999  555443   6899999865


Q ss_pred             CCCC
Q psy17460        129 PFGT  132 (216)
Q Consensus       129 p~~~  132 (216)
                      .+++
T Consensus        76 ~l~~   79 (224)
T smart00828       76 VIHH   79 (224)
T ss_pred             HHHh
Confidence            5543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.30  E-value=6.2e-11  Score=99.50  Aligned_cols=97  Identities=15%  Similarity=0.130  Sum_probs=72.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|.++..+++. +..+++++|+++++++.++++...   .+++++.+|+  .+.+...  ++||+|+++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~--e~lp~~~--~sFDvVIs~  185 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDA--EDLPFPT--DYADRYVSA  185 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccH--HhCCCCC--CceeEEEEc
Confidence            5679999999999999887765 336899999999999999987642   2688999999  6665443  689999998


Q ss_pred             CCCCCC-CCCCCHHHHHHHhhcCCce
Q psy17460        128 PPFGTR-NCGIDLAFVQYAADISKVV  152 (216)
Q Consensus       128 pp~~~~-~~~~~~~~~~~~l~~~~~l  152 (216)
                      ..+++. +.....+-+.+.+++++.+
T Consensus       186 ~~L~~~~d~~~~L~e~~rvLkPGG~L  211 (340)
T PLN02490        186 GSIEYWPDPQRGIKEAYRVLKIGGKA  211 (340)
T ss_pred             ChhhhCCCHHHHHHHHHHhcCCCcEE
Confidence            887755 3222333444555555553

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.29  E-value=6.3e-11  Score=95.05  Aligned_cols=106  Identities=13%  Similarity=0.120  Sum_probs=80.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccc----ccCc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSV----FKQK  120 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~----~~~~  120 (216)
                      .++++|||+|||+|..++.++.. + .++|+++|+++++++.|+.|+..+++. +++++.+|+  .+.....    ..++
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda--~~~L~~l~~~~~~~~  144 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA--LSALDQLLNNDPKPE  144 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH--HHHHHHHHhCCCCCC
Confidence            36789999999999988776654 2 479999999999999999999999986 699999999  6653221    1258


Q ss_pred             ccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        121 VDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       121 ~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      ||+||+|.+-.                            ....++..+.+.++| +|.++++.-
T Consensus       145 fD~VfiDa~k~----------------------------~y~~~~~~~~~ll~~-GG~ii~dn~  179 (234)
T PLN02781        145 FDFAFVDADKP----------------------------NYVHFHEQLLKLVKV-GGIIAFDNT  179 (234)
T ss_pred             CCEEEECCCHH----------------------------HHHHHHHHHHHhcCC-CeEEEEEcC
Confidence            99999986311                            012344556677788 888887544

>KOG3191|consensus

Probab=99.29  E-value=1.6e-10  Score=87.00  Aligned_cols=121  Identities=17%  Similarity=0.272  Sum_probs=91.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ..+.++|+|||+|..+..+++. ++ ....++|+||.+.+..++.+..++. +++.+..|.  ..-...   +++|+++.
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl--~~~l~~---~~VDvLvf  116 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDL--LSGLRN---ESVDVLVF  116 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhH--Hhhhcc---CCccEEEE
Confidence            4778999999999999888875 33 6788999999999999999999988 799999999  766544   89999999


Q ss_pred             cCCCCCC-CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460        127 NPPFGTR-NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA  181 (216)
Q Consensus       127 npp~~~~-~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~  181 (216)
                      ||||... ......+.+..++.-+.     ......+.++.+....|.| .|.+..
T Consensus       117 NPPYVpt~~~~i~~~~i~~a~aGG~-----~Gr~v~d~ll~~v~~iLSp-~Gv~Yl  166 (209)
T KOG3191|consen  117 NPPYVPTSDEEIGDEGIASAWAGGK-----DGREVTDRLLPQVPDILSP-RGVFYL  166 (209)
T ss_pred             CCCcCcCCcccchhHHHHHHHhcCc-----chHHHHHHHHhhhhhhcCc-CceEEe
Confidence            9999987 33343556666665444     1122244555556667777 666554

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.28  E-value=1.1e-10  Score=97.44  Aligned_cols=79  Identities=16%  Similarity=0.125  Sum_probs=66.3

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...++.+|||+|||+|.++..+++...  +.|+++|+++++++.|+.++..++.+++.++.+|+  .+.+...  .+||+
T Consensus        77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~--~~~~~~~--~~fD~  152 (322)
T PRK13943         77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG--YYGVPEF--APYDV  152 (322)
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh--hhccccc--CCccE
Confidence            345788999999999999988887632  47999999999999999999988887899999999  6655433  57999


Q ss_pred             EEEcC
Q psy17460        124 VIMNP  128 (216)
Q Consensus       124 vi~np  128 (216)
                      |+++.
T Consensus       153 Ii~~~  157 (322)
T PRK13943        153 IFVTV  157 (322)
T ss_pred             EEECC
Confidence            99864

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.27  E-value=3.3e-12  Score=88.70  Aligned_cols=98  Identities=17%  Similarity=0.199  Sum_probs=60.4

Q ss_pred             EEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCC
Q psy17460         54 LDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGT  132 (216)
Q Consensus        54 lD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~  132 (216)
                      ||+|||+|.++..++...+ .+++|+|+|+.+++.+++++......+...+..+.  .+.......++||+|++.-.+++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~fD~V~~~~vl~~   78 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDV--LDLFDYDPPESFDLVVASNVLHH   78 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--S--SS---CCC----SEEEEE-TTS-
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeec--CChhhcccccccceehhhhhHhh
Confidence            7999999999988887744 79999999999999999988876654455555555  44332222259999999877764


Q ss_pred             CCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceee
Q psy17460        133 RNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDV  179 (216)
Q Consensus       133 ~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~  179 (216)
                      .                         .+...+++.+.+.|+| +|.+
T Consensus        79 l-------------------------~~~~~~l~~~~~~L~p-gG~l   99 (99)
T PF08242_consen   79 L-------------------------EDIEAVLRNIYRLLKP-GGIL   99 (99)
T ss_dssp             --------------------------S-HHHHHHHHTTT-TS-S-EE
T ss_pred             h-------------------------hhHHHHHHHHHHHcCC-CCCC
Confidence            4                         2345677777888888 8764

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.27  E-value=1.3e-10  Score=92.34  Aligned_cols=78  Identities=23%  Similarity=0.383  Sum_probs=65.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|++++..|+.++...+.. ++++..+|+  .+.+     ++||+|++
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~--~~~~-----~~fD~ii~  125 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL--LSLC-----GEFDIVVC  125 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh--hhCC-----CCcCEEEE
Confidence            4688999999999999999988755 8999999999999999998776653 799999999  6654     58999998


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      .-.+.+.
T Consensus       126 ~~~l~~~  132 (219)
T TIGR02021       126 MDVLIHY  132 (219)
T ss_pred             hhHHHhC
Confidence            6555443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK04266 fibrillarin; Provisional

Probab=99.27  E-value=2.1e-10  Score=91.42  Aligned_cols=118  Identities=19%  Similarity=0.220  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE  109 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  109 (216)
                      ......++..+ ..+...++.+|||+|||+|.++..++... ...|+|+|+++.|++.+.+++...  +|+.++.+|+  
T Consensus        55 ~~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~--  129 (226)
T PRK04266         55 SKLAAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADA--  129 (226)
T ss_pred             cchHHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCC--
Confidence            34445555444 23355688899999999999999988864 368999999999999887776543  3899999999  


Q ss_pred             cccc-cccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEE
Q psy17460        110 KSLD-SSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYS  154 (216)
Q Consensus       110 ~~~~-~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~  154 (216)
                      .+.. .....++||+|+++.+.... .....+...+.+++++.+.+
T Consensus       130 ~~~~~~~~l~~~~D~i~~d~~~p~~-~~~~L~~~~r~LKpGG~lvI  174 (226)
T PRK04266        130 RKPERYAHVVEKVDVIYQDVAQPNQ-AEIAIDNAEFFLKDGGYLLL  174 (226)
T ss_pred             CCcchhhhccccCCEEEECCCChhH-HHHHHHHHHHhcCCCcEEEE
Confidence            5421 01112579999987653110 00012344455666665444

>KOG1499|consensus

Probab=99.26  E-value=2.8e-11  Score=99.90  Aligned_cols=109  Identities=24%  Similarity=0.323  Sum_probs=84.1

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEecccccccccccccCcccEEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN-CDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .++++.|||+|||||.+++++|+.|+.+|+++|.+. +.+.|.+.+..|++.+ ++++.|.+++.++|.    +++|+|+
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~----eKVDiIv  132 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPV----EKVDIIV  132 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCc----cceeEEe
Confidence            368999999999999999999999999999999976 5599999999999884 999999998887772    7999999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        126 MNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       126 ~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      +             +|.-.++         +..+..+.++-.--+||++ +|.++-..
T Consensus       133 S-------------EWMGy~L---------l~EsMldsVl~ARdkwL~~-~G~i~P~~  167 (346)
T KOG1499|consen  133 S-------------EWMGYFL---------LYESMLDSVLYARDKWLKE-GGLIYPDR  167 (346)
T ss_pred             e-------------hhhhHHH---------HHhhhhhhhhhhhhhccCC-CceEcccc
Confidence            8             2222222         1222333444445678888 77766533

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.26  E-value=1.9e-10  Score=91.99  Aligned_cols=80  Identities=19%  Similarity=0.272  Sum_probs=65.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      .++.+|||+|||+|..+..++..++  .+++++|+++.+++.++.++...+.. +++++.+|+  .+.+...  ++||+|
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~--~~~D~I  125 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA--EALPFPD--NSFDAV  125 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc--ccCCCCC--CCccEE
Confidence            3678999999999999999888763  79999999999999999998765443 689999999  6655432  689999


Q ss_pred             EEcCCCC
Q psy17460        125 IMNPPFG  131 (216)
Q Consensus       125 i~npp~~  131 (216)
                      +++..++
T Consensus       126 ~~~~~l~  132 (239)
T PRK00216        126 TIAFGLR  132 (239)
T ss_pred             EEecccc
Confidence            9865444

>PRK05785 hypothetical protein; Provisional

Probab=99.25  E-value=1.8e-10  Score=91.93  Aligned_cols=102  Identities=19%  Similarity=0.185  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL  112 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  112 (216)
                      ....++..+....  .++.+|||+|||||.++..+++....+|+|+|+|++|++.|+..        ..++.+|+  .++
T Consensus        37 wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~--~~l  104 (226)
T PRK05785         37 WRAELVKTILKYC--GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSF--EAL  104 (226)
T ss_pred             HHHHHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEech--hhC
Confidence            3444555554321  14679999999999999988887335899999999999998764        13578999  677


Q ss_pred             ccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhc
Q psy17460        113 DSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADI  148 (216)
Q Consensus       113 ~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~  148 (216)
                      ++..  ++||+|+++...++. +.....+.+.+++++
T Consensus       105 p~~d--~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp  139 (226)
T PRK05785        105 PFRD--KSFDVVMSSFALHASDNIEKVIAEFTRVSRK  139 (226)
T ss_pred             CCCC--CCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence            7654  799999998877655 433445555556654

>PRK08317 hypothetical protein; Provisional

Probab=99.25  E-value=2.6e-10  Score=91.04  Aligned_cols=100  Identities=15%  Similarity=0.112  Sum_probs=72.8

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcC-C-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLG-A-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~-~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ..++.+|||+|||+|..+..++... + .+++|+|+++.+++.++.+..... .++++..+|+  ...+...  ++||+|
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~-~~~~~~~~d~--~~~~~~~--~~~D~v   91 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG-PNVEFVRGDA--DGLPFPD--GSFDAV   91 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-CceEEEeccc--ccCCCCC--CCceEE
Confidence            3478899999999999999888763 3 699999999999999998833222 2799999999  6655433  689999


Q ss_pred             EEcCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460        125 IMNPPFGTR-NCGIDLAFVQYAADISKV  151 (216)
Q Consensus       125 i~npp~~~~-~~~~~~~~~~~~l~~~~~  151 (216)
                      +++..+++. +.....+.+..++++++.
T Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~  119 (241)
T PRK08317         92 RSDRVLQHLEDPARALAEIARVLRPGGR  119 (241)
T ss_pred             EEechhhccCCHHHHHHHHHHHhcCCcE
Confidence            998877654 322233344444444444

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.25  E-value=3.2e-10  Score=90.80  Aligned_cols=91  Identities=24%  Similarity=0.301  Sum_probs=70.0

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccc
Q psy17460         38 LHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVF  117 (216)
Q Consensus        38 ~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  117 (216)
                      +..+...+...++.+|||+|||+|.++..+++.+. +++++|++++++..++.++...+. ++++..+|+  .+.+.. .
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~--~~~~~~-~  111 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTA--EELAAE-H  111 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCH--HHhhhh-c
Confidence            34444443345788999999999999988888765 899999999999999998877665 688888888  655421 1


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      .++||+|+++..+.+.
T Consensus       112 ~~~fD~Ii~~~~l~~~  127 (233)
T PRK05134        112 PGQFDVVTCMEMLEHV  127 (233)
T ss_pred             CCCccEEEEhhHhhcc
Confidence            2689999997766544

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.25  E-value=4.1e-11  Score=93.45  Aligned_cols=79  Identities=23%  Similarity=0.312  Sum_probs=60.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .++++|+|++||.|.+++.+++.+ ++.|+++|++|.+++.+++|+..|+++ ++.++.+|+  .++...   ..+|.|+
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~--~~~~~~---~~~drvi  174 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA--REFLPE---GKFDRVI  174 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G--GG---T---T-EEEEE
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH--HHhcCc---cccCEEE
Confidence            368999999999999999999843 368999999999999999999999987 599999999  877653   7999999


Q ss_pred             EcCCCC
Q psy17460        126 MNPPFG  131 (216)
Q Consensus       126 ~npp~~  131 (216)
                      +|.|..
T Consensus       175 m~lp~~  180 (200)
T PF02475_consen  175 MNLPES  180 (200)
T ss_dssp             E--TSS
T ss_pred             ECChHH
Confidence            999865

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.25  E-value=2.8e-10  Score=94.85  Aligned_cols=93  Identities=23%  Similarity=0.207  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC-----CCceEEEEec
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE-----ITNCDAILFE  106 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~-----~~~v~~~~~d  106 (216)
                      ...+.++..+... ...++.+|||+|||+|.++..+++.+. +|+|+|+|++|++.++++.....     ..++++..+|
T Consensus       128 ~~v~~~l~~l~~~-~~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D  205 (315)
T PLN02585        128 QTVEKVLLWLAED-GSLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND  205 (315)
T ss_pred             HHHHHHHHHHHhc-CCCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence            4445555555432 123678999999999999999998865 89999999999999999987642     2257888888


Q ss_pred             ccccccccccccCcccEEEEcCCCCCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +  .++.     ++||+|+|...+++.
T Consensus       206 l--~~l~-----~~fD~Vv~~~vL~H~  225 (315)
T PLN02585        206 L--ESLS-----GKYDTVTCLDVLIHY  225 (315)
T ss_pred             h--hhcC-----CCcCEEEEcCEEEec
Confidence            8  4432     689999998776554

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.24  E-value=6.2e-11  Score=104.49  Aligned_cols=106  Identities=18%  Similarity=0.184  Sum_probs=77.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.++....  ..++++++.+|+.....+..  .++||+|+++
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~--~~~fD~I~~~  110 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNIS--DGSVDLIFSN  110 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCC--CCCEEEEehh
Confidence            467799999999999999999875 489999999999988765322  22379999999932233332  2789999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      .++++...                       .....+++.+.++|+| +|.+++.
T Consensus       111 ~~l~~l~~-----------------------~~~~~~l~~~~r~Lk~-gG~l~~~  141 (475)
T PLN02336        111 WLLMYLSD-----------------------KEVENLAERMVKWLKV-GGYIFFR  141 (475)
T ss_pred             hhHHhCCH-----------------------HHHHHHHHHHHHhcCC-CeEEEEE
Confidence            88765411                       1124566667778888 8877764

>KOG1540|consensus

Probab=99.24  E-value=2.2e-10  Score=90.68  Aligned_cols=105  Identities=16%  Similarity=0.165  Sum_probs=76.9

Q ss_pred             cCCCCCCEEEEecCCCCHhHHHHhHc-CC------CEEEEEeCChHHHHHHHHhhhHhCCC---ceEEEEeccccccccc
Q psy17460         45 YNDIDGKTVLDLGCGSGILTFGSILL-GA------DFCFALECDKEILDIFIDNKNEFEIT---NCDAILFEINEKSLDS  114 (216)
Q Consensus        45 ~~~~~~~~vlD~g~GtG~~~~~~~~~-~~------~~v~~iD~~~~~~~~~~~~~~~~~~~---~v~~~~~d~~~~~~~~  114 (216)
                      +.+..+.++||++||||-++.-+... ..      .+|+..|+||+|+..++++....++.   .+.++.+|+  .++|+
T Consensus        96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA--E~LpF  173 (296)
T KOG1540|consen   96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA--EDLPF  173 (296)
T ss_pred             cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc--ccCCC
Confidence            34457899999999999999887765 22      69999999999999999998766654   389999999  67776


Q ss_pred             ccccCcccEEEEcCCCCCCCCCC---CHHHHHHHhhcCCceEEE
Q psy17460        115 SVFKQKVDTVIMNPPFGTRNCGI---DLAFVQYAADISKVVYSL  155 (216)
Q Consensus       115 ~~~~~~~D~vi~npp~~~~~~~~---~~~~~~~~l~~~~~ly~~  155 (216)
                      .+  ++||...+  .|+.++...   .++-.+++|+++++++++
T Consensus       174 dd--~s~D~yTi--afGIRN~th~~k~l~EAYRVLKpGGrf~cL  213 (296)
T KOG1540|consen  174 DD--DSFDAYTI--AFGIRNVTHIQKALREAYRVLKPGGRFSCL  213 (296)
T ss_pred             CC--CcceeEEE--ecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            65  89999988  666553322   233334445555544433

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.23  E-value=4.7e-11  Score=91.65  Aligned_cols=75  Identities=15%  Similarity=0.214  Sum_probs=56.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      .-.++||+|||.|.++..++.+ +..++++|+++.+++.|+.++...  ++|+++.+|+  .+..+.   ++||+|++.-
T Consensus        43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dv--p~~~P~---~~FDLIV~SE  114 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL--PHVEWIQADV--PEFWPE---GRFDLIVLSE  114 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-T--TT---S---S-EEEEEEES
T ss_pred             ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcC--CCCCCC---CCeeEEEEeh
Confidence            4468999999999999999998 469999999999999999998754  4899999999  776544   7999999854


Q ss_pred             CCC
Q psy17460        129 PFG  131 (216)
Q Consensus       129 p~~  131 (216)
                      -+.
T Consensus       115 VlY  117 (201)
T PF05401_consen  115 VLY  117 (201)
T ss_dssp             -GG
T ss_pred             HhH
Confidence            433

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=4.7e-10  Score=89.14  Aligned_cols=107  Identities=22%  Similarity=0.193  Sum_probs=84.6

Q ss_pred             HhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEeccccccccccccc
Q psy17460         42 QNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITN-CDAILFEINEKSLDSSVFK  118 (216)
Q Consensus        42 ~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~  118 (216)
                      ...++..+|.+|+|.|+|+|.++..++.. ++ ++|+++|+.++.++.|++|++..++.+ +++..+|+  .+....   
T Consensus        87 ~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv--~~~~~~---  161 (256)
T COG2519          87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV--REGIDE---  161 (256)
T ss_pred             HHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc--cccccc---
Confidence            33345578999999999999999998864 55 899999999999999999999988875 99999999  777665   


Q ss_pred             CcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEee
Q psy17460        119 QKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHK  157 (216)
Q Consensus       119 ~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~  157 (216)
                      +.||+||.|.|=.    -...+...+++.+++.+.++.+
T Consensus       162 ~~vDav~LDmp~P----W~~le~~~~~Lkpgg~~~~y~P  196 (256)
T COG2519         162 EDVDAVFLDLPDP----WNVLEHVSDALKPGGVVVVYSP  196 (256)
T ss_pred             cccCEEEEcCCCh----HHHHHHHHHHhCCCcEEEEEcC
Confidence            5999999998833    3344455666666665444343

>PRK00811 spermidine synthase; Provisional

Probab=99.23  E-value=2e-10  Score=94.71  Aligned_cols=79  Identities=14%  Similarity=0.162  Sum_probs=64.3

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhC-----CCceEEEEecccccccccccccCcc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFE-----ITNCDAILFEINEKSLDSSVFKQKV  121 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~  121 (216)
                      ..+++||++|||+|..+.+++++ +..+|+++|+|+.+++.|++++....     -++++++.+|+  ..+... ..++|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da--~~~l~~-~~~~y  151 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG--IKFVAE-TENSF  151 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch--HHHHhh-CCCcc
Confidence            35789999999999999998887 34799999999999999999886432     23799999999  765533 23689


Q ss_pred             cEEEEcCC
Q psy17460        122 DTVIMNPP  129 (216)
Q Consensus       122 D~vi~npp  129 (216)
                      |+|++|.+
T Consensus       152 DvIi~D~~  159 (283)
T PRK00811        152 DVIIVDST  159 (283)
T ss_pred             cEEEECCC
Confidence            99999853

>KOG4300|consensus

Probab=99.23  E-value=3.9e-10  Score=86.73  Aligned_cols=111  Identities=15%  Similarity=0.134  Sum_probs=83.0

Q ss_pred             EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceE-EEEecccccccccccccCcccEEEEcCCC
Q psy17460         52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCD-AILFEINEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      .||++|||||..--..-......|+++|.+++|-+.+.+.+..+.-.+++ |+.++.  .+++. ..+.++|+|+|    
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g--e~l~~-l~d~s~DtVV~----  151 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG--ENLPQ-LADGSYDTVVC----  151 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech--hcCcc-cccCCeeeEEE----
Confidence            58999999999765433332369999999999999999999887655777 999999  66651 12289999998    


Q ss_pred             CCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee-eeecCCCccc
Q psy17460        131 GTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA-EMKYDLNQSY  191 (216)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~-~~~~~~~~~~  191 (216)
                                           .+.+++..+....++..+++|+| +|++++ |++...-..+
T Consensus       152 ---------------------TlvLCSve~~~k~L~e~~rlLRp-gG~iifiEHva~~y~~~  191 (252)
T KOG4300|consen  152 ---------------------TLVLCSVEDPVKQLNEVRRLLRP-GGRIIFIEHVAGEYGFW  191 (252)
T ss_pred             ---------------------EEEEeccCCHHHHHHHHHHhcCC-CcEEEEEecccccchHH
Confidence                                 34556667778888888888888 777664 6665444333

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.22  E-value=2.7e-10  Score=89.85  Aligned_cols=106  Identities=16%  Similarity=0.068  Sum_probs=68.8

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC-C-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc------ccccC
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG-A-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS------SVFKQ  119 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~-~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~~  119 (216)
                      .++.+|||+|||+|.++..+++.. + +.|+|+|+++ +          ...++++++++|+  .+...      ....+
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~--~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDF--RDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCC--CChHHHHHHHHHhCCC
Confidence            468899999999999998888763 3 6999999998 1          1233789999999  55320      11126


Q ss_pred             cccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        120 KVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       120 ~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      +||+|++|+..+.. ++..+....   ..            ..+.+++.+.+.|+| +|.+++.
T Consensus       117 ~~D~V~S~~~~~~~g~~~~d~~~~---~~------------~~~~~L~~~~~~Lkp-GG~~vi~  164 (209)
T PRK11188        117 KVQVVMSDMAPNMSGTPAVDIPRA---MY------------LVELALDMCRDVLAP-GGSFVVK  164 (209)
T ss_pred             CCCEEecCCCCccCCChHHHHHHH---HH------------HHHHHHHHHHHHcCC-CCEEEEE
Confidence            89999998733222 111110000   00            013466667777888 7777774

>KOG2671|consensus

Probab=99.22  E-value=5e-12  Score=103.63  Aligned_cols=129  Identities=18%  Similarity=0.171  Sum_probs=91.7

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHH-------HHHHhhhHhCCC--ceEEEEeccccccccccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILD-------IFIDNKNEFEIT--NCDAILFEINEKSLDSSV  116 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~-------~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~  116 (216)
                      ...+|+.|.|++.|||++.+.++..|+ .|+|.|||..++.       ..+.|++++|..  =+.++.+|+  .+.+...
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~--sn~~~rs  281 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADF--SNPPLRS  281 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecc--cCcchhh
Confidence            446899999999999999999999987 9999999999887       456788888865  378999999  8877654


Q ss_pred             ccCcccEEEEcCCCCCC--CCCC-CHH---HHHH----HhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460        117 FKQKVDTVIMNPPFGTR--NCGI-DLA---FVQY----AADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA  181 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~--~~~~-~~~---~~~~----~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~  181 (216)
                       ...||+|+|||||+.+  .+.. ..+   ...+    ...+.-..|++  .+....++..+.+.|.. +|+++.
T Consensus       282 -n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl--~~~v~dll~fss~~L~~-ggrlv~  352 (421)
T KOG2671|consen  282 -NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSL--SSLVYDLLCFSSRRLVD-GGRLVF  352 (421)
T ss_pred             -cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHH--HHHHhhHHHhhHhhhhc-CceEEE
Confidence             3789999999999987  1111 000   0000    00000001111  12356777778888888 898887

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.22  E-value=7.5e-12  Score=97.69  Aligned_cols=85  Identities=22%  Similarity=0.236  Sum_probs=73.0

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      +..+|.+|||.+.|-|..+++++++|+..|+.+|.||+.+++|..|.=..++-  +++++.||+  .++.....+++||+
T Consensus       131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~--~e~V~~~~D~sfDa  208 (287)
T COG2521         131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA--YEVVKDFDDESFDA  208 (287)
T ss_pred             ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH--HHHHhcCCccccce
Confidence            34579999999999999999999999989999999999999999986433332  689999999  88876666689999


Q ss_pred             EEEcCCCCC
Q psy17460        124 VIMNPPFGT  132 (216)
Q Consensus       124 vi~npp~~~  132 (216)
                      |+-|||=..
T Consensus       209 IiHDPPRfS  217 (287)
T COG2521         209 IIHDPPRFS  217 (287)
T ss_pred             EeeCCCccc
Confidence            999999543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.21  E-value=5.2e-10  Score=89.92  Aligned_cols=124  Identities=17%  Similarity=0.180  Sum_probs=85.3

Q ss_pred             HHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc-
Q psy17460         40 TIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS-  115 (216)
Q Consensus        40 ~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~-  115 (216)
                      ++...+...+|.+|+|.|+|+|+++..+++. ++ ++|+..|..++.++.|++|++..++. ++++...|+  .+.-+. 
T Consensus        31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv--~~~g~~~  108 (247)
T PF08704_consen   31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV--CEEGFDE  108 (247)
T ss_dssp             HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G--GCG--ST
T ss_pred             HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce--ecccccc
Confidence            3344445579999999999999999998875 54 89999999999999999999999987 799999999  543321 


Q ss_pred             cccCcccEEEEcCCCCCCCCCCCHHHHHHHh-hcCCceEEEeeCcchHHHHHHHHHh
Q psy17460        116 VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAA-DISKVVYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus       116 ~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l-~~~~~ly~~~~~~~~~~~~~~~~~~  171 (216)
                      .....+|.||.|.|-    +-........++ +.++.+-++.  .+.+.+.+.+..+
T Consensus       109 ~~~~~~DavfLDlp~----Pw~~i~~~~~~L~~~gG~i~~fs--P~ieQv~~~~~~L  159 (247)
T PF08704_consen  109 ELESDFDAVFLDLPD----PWEAIPHAKRALKKPGGRICCFS--PCIEQVQKTVEAL  159 (247)
T ss_dssp             T-TTSEEEEEEESSS----GGGGHHHHHHHE-EEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred             cccCcccEEEEeCCC----HHHHHHHHHHHHhcCCceEEEEC--CCHHHHHHHHHHH
Confidence            112689999999984    444556777777 5565444333  3455555444433

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK04457 spermidine synthase; Provisional

Probab=99.21  E-value=2.6e-10  Score=92.98  Aligned_cols=77  Identities=13%  Similarity=0.118  Sum_probs=63.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++++|||+|||+|.++..++...+ .+++++|+|+++++.|++++...+. ++++++.+|+  .++.... .++||+|++
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da--~~~l~~~-~~~yD~I~~  142 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADG--AEYIAVH-RHSTDVILV  142 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCH--HHHHHhC-CCCCCEEEE
Confidence            567999999999999998877654 7899999999999999999865543 3799999999  6654322 268999999


Q ss_pred             cC
Q psy17460        127 NP  128 (216)
Q Consensus       127 np  128 (216)
                      |.
T Consensus       143 D~  144 (262)
T PRK04457        143 DG  144 (262)
T ss_pred             eC
Confidence            84

>PRK10742 putative methyltransferase; Provisional

Probab=99.21  E-value=1e-09  Score=87.57  Aligned_cols=126  Identities=12%  Similarity=0.091  Sum_probs=91.9

Q ss_pred             CCCCCC--EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh------C--C-CceEEEEeccccccccc
Q psy17460         46 NDIDGK--TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF------E--I-TNCDAILFEINEKSLDS  114 (216)
Q Consensus        46 ~~~~~~--~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~------~--~-~~v~~~~~d~~~~~~~~  114 (216)
                      +..+|.  +|||+.+|+|..+++++..|+ +|+++|.++.+....+.+++..      +  + .+++++.+|.  .++..
T Consensus        83 glk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da--~~~L~  159 (250)
T PRK10742         83 GIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS--LTALT  159 (250)
T ss_pred             CCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH--HHHHh
Confidence            334666  899999999999999999988 5999999999999999998874      2  2 3699999999  77764


Q ss_pred             ccccCcccEEEEcCCCCCCCCCC-CHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        115 SVFKQKVDTVIMNPPFGTRNCGI-DLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       115 ~~~~~~~D~vi~npp~~~~~~~~-~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      .. .++||+|++||||.+..+.+ .++-+.....+.+      ...+.+++++.+.+.-+.   ++|++..
T Consensus       160 ~~-~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g------~d~d~~~lL~~Al~~A~k---RVVVKrp  220 (250)
T PRK10742        160 DI-TPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVG------PDLDADGLLEPARLLATK---RVVVKRP  220 (250)
T ss_pred             hC-CCCCcEEEECCCCCCCccccchhhhHHHHHHhcC------CCCChHHHHHHHHHhcCc---eEEEecC
Confidence            42 25799999999999984443 3333332222222      234567888888887333   5666544

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.20  E-value=2.7e-10  Score=95.05  Aligned_cols=93  Identities=20%  Similarity=0.346  Sum_probs=79.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN-CDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      +|.+|+|++||.|.+++.+|+.+...|+++|+||.+++.+++|+..|++.+ ++.++||+  .+.....  ..+|.|+++
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~--rev~~~~--~~aDrIim~  263 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA--REVAPEL--GVADRIIMG  263 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH--HHhhhcc--ccCCEEEeC
Confidence            599999999999999999999988669999999999999999999999985 99999999  7777554  689999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      .|...      .+++..++...+.
T Consensus       264 ~p~~a------~~fl~~A~~~~k~  281 (341)
T COG2520         264 LPKSA------HEFLPLALELLKD  281 (341)
T ss_pred             CCCcc------hhhHHHHHHHhhc
Confidence            88642      2467766666554

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.20  E-value=7.6e-10  Score=88.26  Aligned_cols=78  Identities=23%  Similarity=0.284  Sum_probs=65.2

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|.++..++..+. .++|+|+++++++.++++....+. .++++..+|+  ...     .++||+|++
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~--~~~-----~~~fD~v~~  133 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDL--ESL-----LGRFDTVVC  133 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc--hhc-----cCCcCEEEE
Confidence            4677999999999999999988865 799999999999999999887766 3789999997  332     168999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      .-.+++.
T Consensus       134 ~~~l~~~  140 (230)
T PRK07580        134 LDVLIHY  140 (230)
T ss_pred             cchhhcC
Confidence            8777554

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.19  E-value=2.5e-10  Score=93.16  Aligned_cols=109  Identities=9%  Similarity=0.018  Sum_probs=77.4

Q ss_pred             CCCEEEEecCCCCH----hHHHHhHcC------CCEEEEEeCChHHHHHHHHhhhH----hC------------------
Q psy17460         49 DGKTVLDLGCGSGI----LTFGSILLG------ADFCFALECDKEILDIFIDNKNE----FE------------------   96 (216)
Q Consensus        49 ~~~~vlD~g~GtG~----~~~~~~~~~------~~~v~~iD~~~~~~~~~~~~~~~----~~------------------   96 (216)
                      ++.+|||+|||||.    +++.+++.+      ..+|+|+|+|+.+++.|+..+..    .+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    455555432      25899999999999999986411    00                  


Q ss_pred             ----C-CceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460         97 ----I-TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus        97 ----~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~  171 (216)
                          + .+|+|..+|+  .+.+...  ++||+|+|.-.+++.                       .......+++...+.
T Consensus       179 v~~~ir~~V~F~~~dl--~~~~~~~--~~fD~I~crnvl~yf-----------------------~~~~~~~~l~~l~~~  231 (264)
T smart00138      179 VKPELKERVRFAKHNL--LAESPPL--GDFDLIFCRNVLIYF-----------------------DEPTQRKLLNRFAEA  231 (264)
T ss_pred             EChHHhCcCEEeeccC--CCCCCcc--CCCCEEEechhHHhC-----------------------CHHHHHHHHHHHHHH
Confidence                1 1589999999  7765422  789999995543322                       223445678888899


Q ss_pred             cCccceeeeeeeec
Q psy17460        172 KNVEQVDVIAEMKY  185 (216)
Q Consensus       172 l~~~~g~~~~~~~~  185 (216)
                      |+| +|.+++-..-
T Consensus       232 L~p-GG~L~lg~~E  244 (264)
T smart00138      232 LKP-GGYLFLGHSE  244 (264)
T ss_pred             hCC-CeEEEEECcc
Confidence            999 9999985443

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02476 O-methyltransferase

Probab=99.19  E-value=1e-09  Score=89.63  Aligned_cols=80  Identities=11%  Similarity=0.092  Sum_probs=67.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccc----ccCc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSV----FKQK  120 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~----~~~~  120 (216)
                      .++++|||+|+|+|..++.++.. + .++|+++|.+++.++.|+.+++..|+. +++++.||+  .+.....    ..++
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA--~e~L~~l~~~~~~~~  194 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA--AESLKSMIQNGEGSS  194 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH--HHHHHHHHhcccCCC
Confidence            46889999999999999988875 2 268999999999999999999999987 799999999  6654321    1258


Q ss_pred             ccEEEEcCC
Q psy17460        121 VDTVIMNPP  129 (216)
Q Consensus       121 ~D~vi~npp  129 (216)
                      ||+||.|++
T Consensus       195 FD~VFIDa~  203 (278)
T PLN02476        195 YDFAFVDAD  203 (278)
T ss_pred             CCEEEECCC
Confidence            999999985

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.18  E-value=1e-09  Score=86.86  Aligned_cols=79  Identities=19%  Similarity=0.272  Sum_probs=64.2

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .++.+|||+|||+|..+..++...+  .+++++|+++.+++.++.+..  ...+++++.+|+  .+.+...  ++||+|+
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~--~~~~~~~--~~~D~i~  111 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADA--EALPFED--NSFDAVT  111 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecch--hcCCCCC--CcEEEEE
Confidence            3688999999999999998888765  589999999999999998876  222789999999  6665432  6899999


Q ss_pred             EcCCCCC
Q psy17460        126 MNPPFGT  132 (216)
Q Consensus       126 ~npp~~~  132 (216)
                      ++-.++.
T Consensus       112 ~~~~~~~  118 (223)
T TIGR01934       112 IAFGLRN  118 (223)
T ss_pred             EeeeeCC
Confidence            8665543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.17  E-value=5.3e-10  Score=91.70  Aligned_cols=109  Identities=15%  Similarity=0.163  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC----CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA----DFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN  108 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~----~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  108 (216)
                      +.+.+...+...+. .++.+|||+|||+|.++..++...+    ..++|+|+|+++++.|.++.     +++.+..+|+ 
T Consensus        70 l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~-  142 (272)
T PRK11088         70 LRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASS-  142 (272)
T ss_pred             HHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeec-
Confidence            44455444544322 2456899999999999988776532    37999999999999997763     2688999999 


Q ss_pred             ccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEee
Q psy17460        109 EKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHK  157 (216)
Q Consensus       109 ~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~  157 (216)
                       .++++..  ++||+|++...      ....+.+.+++++++.++...+
T Consensus       143 -~~lp~~~--~sfD~I~~~~~------~~~~~e~~rvLkpgG~li~~~p  182 (272)
T PRK11088        143 -HRLPFAD--QSLDAIIRIYA------PCKAEELARVVKPGGIVITVTP  182 (272)
T ss_pred             -ccCCCcC--CceeEEEEecC------CCCHHHHHhhccCCCEEEEEeC
Confidence             7777654  79999997432      1223456677777776444443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.17  E-value=4.8e-10  Score=76.84  Aligned_cols=103  Identities=17%  Similarity=0.249  Sum_probs=77.7

Q ss_pred             EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460         52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      +|+|+|||+|..+..++.....+++++|++++++..+++........+++++.+|+  .+... ...+++|+|+++++++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~d~i~~~~~~~   77 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDA--EELPP-EADESFDVIISDPPLH   77 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcCh--hhhcc-ccCCceEEEEEcccee
Confidence            48999999999998888744579999999999999998644444444799999999  66543 1126899999999986


Q ss_pred             CCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        132 TRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       132 ~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      ..                        ......+++...+++++ +|.+++.
T Consensus        78 ~~------------------------~~~~~~~l~~~~~~l~~-~g~~~~~  103 (107)
T cd02440          78 HL------------------------VEDLARFLEEARRLLKP-GGVLVLT  103 (107)
T ss_pred             eh------------------------hhHHHHHHHHHHHHcCC-CCEEEEE
Confidence            31                        12344566667777888 8888765

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG2187|consensus

Probab=99.17  E-value=2.6e-10  Score=98.18  Aligned_cols=124  Identities=19%  Similarity=0.262  Sum_probs=97.8

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      |.+....++.+.+.+...+....++.++|+.||||.+++.+++. ..+|+|||++++++.-|+.|+..|+++|.+|++|-
T Consensus       361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq  439 (534)
T KOG2187|consen  361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ  439 (534)
T ss_pred             hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence            66677888888888888777778899999999999999998887 56999999999999999999999999999999996


Q ss_pred             cccccccccccc---Cccc-EEEEcCCCCCCCCCCCHHHHHHHhhcCCc---eEEEee
Q psy17460        107 INEKSLDSSVFK---QKVD-TVIMNPPFGTRNCGIDLAFVQYAADISKV---VYSLHK  157 (216)
Q Consensus       107 ~~~~~~~~~~~~---~~~D-~vi~npp~~~~~~~~~~~~~~~~l~~~~~---ly~~~~  157 (216)
                      +  .++......   .+-+ +++.|||    +.+.+.+++.........   +|..+.
T Consensus       440 a--E~~~~sl~~~~~~~~~~v~iiDPp----R~Glh~~~ik~l~~~~~~~rlvyvSCn  491 (534)
T KOG2187|consen  440 A--EDLFPSLLTPCCDSETLVAIIDPP----RKGLHMKVIKALRAYKNPRRLVYVSCN  491 (534)
T ss_pred             h--hhccchhcccCCCCCceEEEECCC----cccccHHHHHHHHhccCccceEEEEcC
Confidence            6  343222111   2446 7889999    678888777766555422   665553

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.16  E-value=7.6e-10  Score=87.50  Aligned_cols=81  Identities=15%  Similarity=0.124  Sum_probs=60.1

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH------------hCCCceEEEEeccccccccccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNE------------FEITNCDAILFEINEKSLDSSV  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~------------~~~~~v~~~~~d~~~~~~~~~~  116 (216)
                      ++.+|||+|||.|..+..++.+|. .|+|+|+|+.+++.+......            ..-.+++++++|+  .++....
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~--~~~~~~~  110 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF--FALTAAD  110 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC--CCCCccc
Confidence            567999999999999999999987 899999999999986432111            0112689999999  7765321


Q ss_pred             ccCcccEEEEcCCCCCC
Q psy17460        117 FKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~  133 (216)
                       .+.||.|+-...+++.
T Consensus       111 -~~~fD~i~D~~~~~~l  126 (213)
T TIGR03840       111 -LGPVDAVYDRAALIAL  126 (213)
T ss_pred             -CCCcCEEEechhhccC
Confidence             1579999865554433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK06202 hypothetical protein; Provisional

Probab=99.16  E-value=5.6e-10  Score=89.44  Aligned_cols=97  Identities=18%  Similarity=0.135  Sum_probs=71.0

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc----CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL----GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~----~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      .++.+|||+|||+|.++..++..    |. .+++|+|+++++++.|+.+....   ++++..+++  ..++..  .++||
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~--~~l~~~--~~~fD  131 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVS--DELVAE--GERFD  131 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEec--cccccc--CCCcc
Confidence            45679999999999998877652    33 58999999999999999886533   456666666  444332  27999


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        123 TVIMNPPFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       123 ~vi~npp~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      +|+++..+++.........+..+.+..+.
T Consensus       132 ~V~~~~~lhh~~d~~~~~~l~~~~r~~~~  160 (232)
T PRK06202        132 VVTSNHFLHHLDDAEVVRLLADSAALARR  160 (232)
T ss_pred             EEEECCeeecCChHHHHHHHHHHHHhcCe
Confidence            99999999887433234566777666655

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.15  E-value=3.7e-10  Score=96.57  Aligned_cols=90  Identities=20%  Similarity=0.218  Sum_probs=72.1

Q ss_pred             CCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         50 GKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      +.+|||++||+|.+++.++.. +..+|+++|+|+++++.+++|++.+++++++++.+|+  ..+...  .+.||+|++||
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da--~~~l~~--~~~fD~V~lDP  133 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA--NALLHE--ERKFDVVDIDP  133 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH--HHHHhh--cCCCCEEEECC
Confidence            468999999999999998765 4468999999999999999999999987788999999  654432  25799999998


Q ss_pred             CCCCCCCCCCHHHHHHHhhcC
Q psy17460        129 PFGTRNCGIDLAFVQYAADIS  149 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~  149 (216)
                      | +.     ...++..++...
T Consensus       134 ~-Gs-----~~~~l~~al~~~  148 (382)
T PRK04338        134 F-GS-----PAPFLDSAIRSV  148 (382)
T ss_pred             C-CC-----cHHHHHHHHHHh
Confidence            6 42     234666655443

>KOG1500|consensus

Probab=99.15  E-value=2.9e-10  Score=93.24  Aligned_cols=78  Identities=32%  Similarity=0.444  Sum_probs=68.1

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      .++.++.|||+|||+|.++.++++.|+.+|+++|.+ +|.+.|++.+..|.+. +|.++.|-+++.++|     ++.|+|
T Consensus       174 sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-----Ek~Dvi  247 (517)
T KOG1500|consen  174 SDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-----EKVDVI  247 (517)
T ss_pred             cccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-----hhccEE
Confidence            346899999999999999999999999999999996 4888899888777665 799999999777776     799999


Q ss_pred             EEcCC
Q psy17460        125 IMNPP  129 (216)
Q Consensus       125 i~npp  129 (216)
                      |+-|.
T Consensus       248 ISEPM  252 (517)
T KOG1500|consen  248 ISEPM  252 (517)
T ss_pred             Eeccc
Confidence            98774

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.15  E-value=9.4e-10  Score=91.73  Aligned_cols=79  Identities=16%  Similarity=0.118  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...++.+|||+|||+|.++..+++..+ .+++++|. +.+++.++.++...++. +++++.+|+  .+.+.    ..+|+
T Consensus       146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~--~~~~~----~~~D~  218 (306)
T TIGR02716       146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI--YKESY----PEADA  218 (306)
T ss_pred             CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCc--cCCCC----CCCCE
Confidence            334668999999999999999998865 78999998 78999999999888875 699999999  65443    24699


Q ss_pred             EEEcCCCC
Q psy17460        124 VIMNPPFG  131 (216)
Q Consensus       124 vi~npp~~  131 (216)
                      |++.-..|
T Consensus       219 v~~~~~lh  226 (306)
T TIGR02716       219 VLFCRILY  226 (306)
T ss_pred             EEeEhhhh
Confidence            87644333

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.14  E-value=8.8e-10  Score=86.48  Aligned_cols=79  Identities=16%  Similarity=0.113  Sum_probs=65.1

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC-C-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccc----cCcc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG-A-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVF----KQKV  121 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~-~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~----~~~~  121 (216)
                      +.++|||+||++|..++.++..- . ++|+.+|++++..+.|+.+++..++. +++++.||+  .+......    .++|
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda--~~~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA--LEVLPELANDGEEGQF  122 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H--HHHHHHHHHTTTTTSE
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc--HhhHHHHHhccCCCce
Confidence            67899999999999999998752 2 79999999999999999999999886 799999999  77543211    1479


Q ss_pred             cEEEEcCC
Q psy17460        122 DTVIMNPP  129 (216)
Q Consensus       122 D~vi~npp  129 (216)
                      |+||.|..
T Consensus       123 D~VFiDa~  130 (205)
T PF01596_consen  123 DFVFIDAD  130 (205)
T ss_dssp             EEEEEEST
T ss_pred             eEEEEccc
Confidence            99999873

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.14  E-value=6.1e-10  Score=83.56  Aligned_cols=97  Identities=19%  Similarity=0.223  Sum_probs=71.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|.++..++..+. +++|+|+++.+++.          .++.....+.  ......  .++||+|+|+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~--~~~~~~--~~~fD~i~~~   85 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDA--QDPPFP--DGSFDLIICN   85 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEEC--HTHHCH--SSSEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhh--hhhhcc--ccchhhHhhH
Confidence            4788999999999999999988877 99999999999988          1344444444  222222  2799999998


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      -.+++..                         +...+++...++|+| +|.+++....
T Consensus        86 ~~l~~~~-------------------------d~~~~l~~l~~~Lkp-gG~l~~~~~~  117 (161)
T PF13489_consen   86 DVLEHLP-------------------------DPEEFLKELSRLLKP-GGYLVISDPN  117 (161)
T ss_dssp             SSGGGSS-------------------------HHHHHHHHHHHCEEE-EEEEEEEEEB
T ss_pred             HHHhhcc-------------------------cHHHHHHHHHHhcCC-CCEEEEEEcC
Confidence            8776551                         244566667777778 7777776654

...

>KOG0820|consensus

Probab=99.14  E-value=4.9e-10  Score=89.47  Aligned_cols=104  Identities=16%  Similarity=0.170  Sum_probs=80.5

Q ss_pred             CcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-
Q psy17460         20 PKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-   98 (216)
Q Consensus        20 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-   98 (216)
                      ....++|+.+...   ..++.+....+..+++.|||+|.|||.++..+.+.|+ +|+++|+|+.|+....+..+..... 
T Consensus        32 fnkd~GQHilkNp---~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~  107 (315)
T KOG0820|consen   32 FNKDFGQHILKNP---LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSG  107 (315)
T ss_pred             cccccchhhhcCH---HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccc
Confidence            3445667665442   2333333333556899999999999999999999976 9999999999999999987655433 


Q ss_pred             ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      .++++.||+  .....    ..||.||+|.||...
T Consensus       108 kLqV~~gD~--lK~d~----P~fd~cVsNlPyqIS  136 (315)
T KOG0820|consen  108 KLQVLHGDF--LKTDL----PRFDGCVSNLPYQIS  136 (315)
T ss_pred             eeeEEeccc--ccCCC----cccceeeccCCcccc
Confidence            699999999  66554    389999999999865

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.14  E-value=1.3e-09  Score=86.54  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=66.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ..+.+|||+|||+|.++..+++.+. .++++|+++.+++.++.++...+..++++..+|+  .+.+... .++||+|+++
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~-~~~~D~i~~~  119 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV--EDLAEKG-AKSFDVVTCM  119 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH--HHhhcCC-CCCccEEEeh
Confidence            3578999999999999988888765 7999999999999999998877654688999999  6655332 2689999997


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      ..+++.
T Consensus       120 ~~l~~~  125 (224)
T TIGR01983       120 EVLEHV  125 (224)
T ss_pred             hHHHhC
Confidence            665543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=99.13  E-value=5.3e-09  Score=82.78  Aligned_cols=163  Identities=18%  Similarity=0.240  Sum_probs=90.4

Q ss_pred             HHHHhhcccCCCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHH
Q psy17460          9 YLQQLTFNFSNPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDI   87 (216)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~   87 (216)
                      .++++...-+.+...+.| +.|++....+.+.+...  ....|++||-+|=+.-.....+....+.+|+.+|+|+.+++.
T Consensus         5 ~~~~i~~~RP~~~~~~DQ~~~T~eT~~~Ra~~~~~~--gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~f   82 (243)
T PF01861_consen    5 KFSEIVKNRPEPDVELDQGYATPETTLRRAALMAER--GDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDF   82 (243)
T ss_dssp             HHHHHHTT-----GGGT---B-HHHHHHHHHHHHHT--T-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHH
T ss_pred             HHHHHHHcCCCCccccccccccHHHHHHHHHHHHhc--CcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHH
Confidence            444555667888888998 88888777777666654  445799999999665554333333445899999999999999


Q ss_pred             HHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc----eEEEeeCcc--h
Q psy17460         88 FIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV----VYSLHKTST--R  161 (216)
Q Consensus        88 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~----ly~~~~~~~--~  161 (216)
                      .++.+...++ +++.+..|+  .+..+....++||++++||||...  +.. -|+.+++..++.    .|..+....  .
T Consensus        83 I~~~a~~~gl-~i~~~~~Dl--R~~LP~~~~~~fD~f~TDPPyT~~--G~~-LFlsRgi~~Lk~~g~~gy~~~~~~~~s~  156 (243)
T PF01861_consen   83 INRVAEEEGL-PIEAVHYDL--RDPLPEELRGKFDVFFTDPPYTPE--GLK-LFLSRGIEALKGEGCAGYFGFTHKEASP  156 (243)
T ss_dssp             HHHHHHHHT---EEEE---T--TS---TTTSS-BSEEEE---SSHH--HHH-HHHHHHHHTB-STT-EEEEEE-TTT--H
T ss_pred             HHHHHHHcCC-ceEEEEecc--cccCCHHHhcCCCEEEeCCCCCHH--HHH-HHHHHHHHHhCCCCceEEEEEecCcCcH
Confidence            9999999999 599999999  665444344899999999999742  222 277777776654    566665543  4


Q ss_pred             HHHHHHHHHhcCccceeeee
Q psy17460        162 ESILKKIQAFKNVEQVDVIA  181 (216)
Q Consensus       162 ~~~~~~~~~~l~~~~g~~~~  181 (216)
                      ....+.-+.++.  .|.++.
T Consensus       157 ~~~~~~Q~~l~~--~gl~i~  174 (243)
T PF01861_consen  157 DKWLEVQRFLLE--MGLVIT  174 (243)
T ss_dssp             HHHHHHHHHHHT--S--EEE
T ss_pred             HHHHHHHHHHHH--CCcCHH
Confidence            444433444443  355554

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PLN02366 spermidine synthase

Probab=99.13  E-value=1.7e-09  Score=89.98  Aligned_cols=82  Identities=15%  Similarity=0.080  Sum_probs=65.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHh--CC--CceEEEEecccccccccccccCccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEF--EI--TNCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      ..+++||++|||+|..+.+++++.. .+|+.+|+|+.+++.|++.+...  +.  ++++++.+|+  .++......++||
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da--~~~l~~~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG--VEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH--HHHHhhccCCCCC
Confidence            3578999999999999999988854 68999999999999999987543  22  2799999999  7664332236899


Q ss_pred             EEEEcCCCC
Q psy17460        123 TVIMNPPFG  131 (216)
Q Consensus       123 ~vi~npp~~  131 (216)
                      +|++|.+-.
T Consensus       168 vIi~D~~dp  176 (308)
T PLN02366        168 AIIVDSSDP  176 (308)
T ss_pred             EEEEcCCCC
Confidence            999987543

>PRK03612 spermidine synthase; Provisional

Probab=99.13  E-value=5.6e-10  Score=99.31  Aligned_cols=82  Identities=13%  Similarity=0.164  Sum_probs=65.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhh--H-h--CC--CceEEEEecccccccccccccC
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKN--E-F--EI--TNCDAILFEINEKSLDSSVFKQ  119 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~--~-~--~~--~~v~~~~~d~~~~~~~~~~~~~  119 (216)
                      .++++|||+|||+|..+.++++++. .+|+++|+|+++++.++++..  . +  ..  ++++++.+|+  .++... ..+
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da--~~~l~~-~~~  372 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDA--FNWLRK-LAE  372 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChH--HHHHHh-CCC
Confidence            4678999999999999999888765 799999999999999999532  1 1  11  3799999999  665432 126


Q ss_pred             cccEEEEcCCCCC
Q psy17460        120 KVDTVIMNPPFGT  132 (216)
Q Consensus       120 ~~D~vi~npp~~~  132 (216)
                      +||+|++|+|...
T Consensus       373 ~fDvIi~D~~~~~  385 (521)
T PRK03612        373 KFDVIIVDLPDPS  385 (521)
T ss_pred             CCCEEEEeCCCCC
Confidence            8999999988653

>PRK01581 speE spermidine synthase; Validated

Probab=99.13  E-value=1e-09  Score=92.27  Aligned_cols=94  Identities=20%  Similarity=0.219  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhh-----hHhC--CCceEEEE
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNK-----NEFE--ITNCDAIL  104 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~-----~~~~--~~~v~~~~  104 (216)
                      +.|.++...+.  ....+++||++|||+|..+.++++... .+|+++|+|+++++.|+...     ....  -++++++.
T Consensus       136 YHE~Lvhp~m~--~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi  213 (374)
T PRK01581        136 YHEALVHPIMS--KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHV  213 (374)
T ss_pred             HHHHHHHHHHH--hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEE
Confidence            55666665543  234677999999999999888888754 79999999999999999732     1112  23799999


Q ss_pred             ecccccccccccccCcccEEEEcCCCC
Q psy17460        105 FEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       105 ~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      +|+  .++... ..++||+|++|.|..
T Consensus       214 ~Da--~~fL~~-~~~~YDVIIvDl~DP  237 (374)
T PRK01581        214 CDA--KEFLSS-PSSLYDVIIIDFPDP  237 (374)
T ss_pred             CcH--HHHHHh-cCCCccEEEEcCCCc
Confidence            999  776433 226899999998643

>TIGR03438 probable methyltransferase

Probab=99.12  E-value=2.8e-09  Score=88.70  Aligned_cols=84  Identities=11%  Similarity=-0.018  Sum_probs=59.8

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccc-ccccc--cCccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSL-DSSVF--KQKVD  122 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~-~~~~~--~~~~D  122 (216)
                      ++.+|||+|||||..+..++...  ..+++++|+|++|++.+..++....-. ++.++++|+  .+. .....  .....
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~--~~~~~~~~~~~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADF--TQPLALPPEPAAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcc--cchhhhhcccccCCeE
Confidence            56789999999999999888774  368999999999999999987653311 678899999  543 22110  01234


Q ss_pred             EEEEcCCCCCCC
Q psy17460        123 TVIMNPPFGTRN  134 (216)
Q Consensus       123 ~vi~npp~~~~~  134 (216)
                      ++++..++++..
T Consensus       141 ~~~~gs~~~~~~  152 (301)
T TIGR03438       141 GFFPGSTIGNFT  152 (301)
T ss_pred             EEEecccccCCC
Confidence            555666666553

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.12  E-value=2.4e-10  Score=99.47  Aligned_cols=109  Identities=20%  Similarity=0.289  Sum_probs=74.3

Q ss_pred             hhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-----CCEEEEEeCChHHHHH
Q psy17460         13 LTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-----ADFCFALECDKEILDI   87 (216)
Q Consensus        13 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-----~~~v~~iD~~~~~~~~   87 (216)
                      +++-|+.+..++.+|.  ..+.+.+.+.........++.+|+|+|||+|.++..+++.+     +.+|++||.|+.++..
T Consensus       152 tYe~fE~D~vKY~~Ye--~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~  229 (448)
T PF05185_consen  152 TYEVFEKDPVKYDQYE--RAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT  229 (448)
T ss_dssp             HHHHHCC-HHHHHHHH--HHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred             cHhhHhcCHHHHHHHH--HHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence            3466777777777776  34544444444432111136799999999999998777664     4799999999999988


Q ss_pred             HHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460         88 FIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        88 ~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      .+..++.++.. +|+++.+|.  .++...   +++|+||+-.
T Consensus       230 l~~~v~~n~w~~~V~vi~~d~--r~v~lp---ekvDIIVSEl  266 (448)
T PF05185_consen  230 LQKRVNANGWGDKVTVIHGDM--REVELP---EKVDIIVSEL  266 (448)
T ss_dssp             HHHHHHHTTTTTTEEEEES-T--TTSCHS---S-EEEEEE--
T ss_pred             HHHHHHhcCCCCeEEEEeCcc--cCCCCC---CceeEEEEec
Confidence            88877777775 799999999  555443   6999999754

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.10  E-value=2.1e-10  Score=87.89  Aligned_cols=98  Identities=17%  Similarity=0.158  Sum_probs=72.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      +|.+|||+|||.|.+...+........+|+|++++.+..|..+       .+.++++|++  +-.....+++||.||++.
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld--~gL~~f~d~sFD~VIlsq   83 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLD--EGLADFPDQSFDYVILSQ   83 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHH--HhHhhCCCCCccEEehHh
Confidence            6899999999999999888876557899999999988887766       6789999994  332223348999999987


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEEee
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSLHK  157 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~  157 (216)
                      ........  .+.+.+.++.++.....++
T Consensus        84 tLQ~~~~P--~~vL~EmlRVgr~~IVsFP  110 (193)
T PF07021_consen   84 TLQAVRRP--DEVLEEMLRVGRRAIVSFP  110 (193)
T ss_pred             HHHhHhHH--HHHHHHHHHhcCeEEEEec
Confidence            66554111  2357777888877444443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG2730|consensus

Probab=99.08  E-value=1.7e-10  Score=89.42  Aligned_cols=101  Identities=24%  Similarity=0.350  Sum_probs=85.3

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEe
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILF  105 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~  105 (216)
                      .-||+.+++.++..+..-   ....+|+|.+||-|..++..+.+++ .|++||+||.-+..|++|++-.|++ +|+|++|
T Consensus        75 svTpe~ia~~iA~~v~~~---~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~G  150 (263)
T KOG2730|consen   75 SVTPEKIAEHIANRVVAC---MNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICG  150 (263)
T ss_pred             EeccHHHHHHHHHHHHHh---cCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEec
Confidence            567888999998887754   2567899999999999999888877 8999999999999999999999998 7999999


Q ss_pred             cccccccccc--cccCcccEEEEcCCCCCC
Q psy17460        106 EINEKSLDSS--VFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       106 d~~~~~~~~~--~~~~~~D~vi~npp~~~~  133 (216)
                      |+  ++....  ..+..+|+|+..||++..
T Consensus       151 D~--ld~~~~lq~~K~~~~~vf~sppwggp  178 (263)
T KOG2730|consen  151 DF--LDLASKLKADKIKYDCVFLSPPWGGP  178 (263)
T ss_pred             hH--HHHHHHHhhhhheeeeeecCCCCCCc
Confidence            99  665432  222457899999999976

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.07  E-value=1.3e-09  Score=84.94  Aligned_cols=96  Identities=17%  Similarity=0.168  Sum_probs=69.7

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|.++..++......++|+|+++++++.++.+       +++++.+|+  .+.......++||+|+++.
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~--~~~l~~~~~~sfD~Vi~~~   83 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDL--DEGLEAFPDKSFDYVILSQ   83 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEh--hhcccccCCCCcCEEEEhh
Confidence            5679999999999999888766445789999999999887642       568899999  5421111126899999999


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEE
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSL  155 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~  155 (216)
                      ++++...  ....++...+.++..+..
T Consensus        84 ~l~~~~d--~~~~l~e~~r~~~~~ii~  108 (194)
T TIGR02081        84 TLQATRN--PEEILDEMLRVGRHAIVS  108 (194)
T ss_pred             HhHcCcC--HHHHHHHHHHhCCeEEEE
Confidence            9887621  234566677776654333

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PTZ00146 fibrillarin; Provisional

Probab=99.07  E-value=3e-09  Score=87.12  Aligned_cols=80  Identities=19%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc-cccccCccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD-SSVFKQKVD  122 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~~~D  122 (216)
                      ...++.+|||+|||+|.++..++.. +. ..|+++|+++.+.+.....+...  +|+.++.+|+  .... .....++||
T Consensus       129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da--~~p~~y~~~~~~vD  204 (293)
T PTZ00146        129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDA--RYPQKYRMLVPMVD  204 (293)
T ss_pred             ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCc--cChhhhhcccCCCC
Confidence            3457889999999999999998886 33 68999999998765555444322  3889999999  4321 111125899


Q ss_pred             EEEEcCC
Q psy17460        123 TVIMNPP  129 (216)
Q Consensus       123 ~vi~npp  129 (216)
                      +|++|.+
T Consensus       205 vV~~Dva  211 (293)
T PTZ00146        205 VIFADVA  211 (293)
T ss_pred             EEEEeCC
Confidence            9999885

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.06  E-value=2.1e-09  Score=91.50  Aligned_cols=92  Identities=20%  Similarity=0.203  Sum_probs=76.1

Q ss_pred             CEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         51 KTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      .+|||++||+|..++.++..  |..+|+++|+|+++++.+++|++.+++.+++++++|+  ..+.... ..+||+|+.||
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da--~~~l~~~-~~~fDvIdlDP  122 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDA--ANVLRYR-NRKFHVIDIDP  122 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhH--HHHHHHh-CCCCCEEEeCC
Confidence            58999999999999999887  5689999999999999999999999887799999999  6664331 25799999999


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                       |+..     ..+++.++.....
T Consensus       123 -fGs~-----~~fld~al~~~~~  139 (374)
T TIGR00308       123 -FGTP-----APFVDSAIQASAE  139 (374)
T ss_pred             -CCCc-----HHHHHHHHHhccc
Confidence             6532     2478888766544

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR00417 speE spermidine synthase

Probab=99.04  E-value=5.7e-09  Score=85.56  Aligned_cols=82  Identities=12%  Similarity=0.118  Sum_probs=64.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhC----CCceEEEEecccccccccccccCccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFE----ITNCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      ..+++||++|||+|.++..+++.. ..+++++|+++++++.+++++....    .++++++.+|+  .++.... .++||
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~--~~~l~~~-~~~yD  147 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG--FKFLADT-ENTFD  147 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch--HHHHHhC-CCCcc
Confidence            356699999999999998888875 3789999999999999999875432    12688999998  6654321 26899


Q ss_pred             EEEEcCCCCC
Q psy17460        123 TVIMNPPFGT  132 (216)
Q Consensus       123 ~vi~npp~~~  132 (216)
                      +|++|++...
T Consensus       148 vIi~D~~~~~  157 (270)
T TIGR00417       148 VIIVDSTDPV  157 (270)
T ss_pred             EEEEeCCCCC
Confidence            9999987543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.02  E-value=5.1e-09  Score=83.09  Aligned_cols=78  Identities=15%  Similarity=0.183  Sum_probs=58.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH------------hCCCceEEEEeccccccccccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNE------------FEITNCDAILFEINEKSLDSSV  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~------------~~~~~v~~~~~d~~~~~~~~~~  116 (216)
                      ++.+|||+|||.|..+..++.+|. .|+|+|+++.+++.+......            ..-.+++++++|+  .++....
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~--~~l~~~~  113 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF--FALTAAD  113 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc--cCCCccc
Confidence            567999999999999999999987 899999999999986431110            0112689999999  7775432


Q ss_pred             ccCcccEEEEcCCC
Q psy17460        117 FKQKVDTVIMNPPF  130 (216)
Q Consensus       117 ~~~~~D~vi~npp~  130 (216)
                      . ..||.|+--..|
T Consensus       114 ~-~~fd~v~D~~~~  126 (218)
T PRK13255        114 L-ADVDAVYDRAAL  126 (218)
T ss_pred             C-CCeeEEEehHhH
Confidence            1 478999854433

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.02  E-value=6.4e-09  Score=81.91  Aligned_cols=79  Identities=19%  Similarity=0.203  Sum_probs=67.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEE-ecccccccccccccCcccE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAIL-FEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~-~d~~~~~~~~~~~~~~~D~  123 (216)
                      .++++|||+|++.|..++.++..-  ..+++++|++++..+.|++|++..++. .+.++. +|+  .+.......++||+
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda--l~~l~~~~~~~fDl  135 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA--LDVLSRLLDGSFDL  135 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH--HHHHHhccCCCccE
Confidence            478899999999999998888753  378999999999999999999999987 488888 698  77654323389999


Q ss_pred             EEEcC
Q psy17460        124 VIMNP  128 (216)
Q Consensus       124 vi~np  128 (216)
                      ||.|.
T Consensus       136 iFIDa  140 (219)
T COG4122         136 VFIDA  140 (219)
T ss_pred             EEEeC
Confidence            99976

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=99.02  E-value=1.5e-09  Score=88.54  Aligned_cols=104  Identities=26%  Similarity=0.367  Sum_probs=82.6

Q ss_pred             CCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460         19 NPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI   97 (216)
Q Consensus        19 ~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~   97 (216)
                      .++..++| |-....+.+.+++.+...    ++..|+|+|+|+|.++..++..+ .+++++|+|+.+++..+......+ 
T Consensus         3 k~kk~~gQnFL~~~~~~~~Iv~~~~~~----~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~-   76 (262)
T PF00398_consen    3 KPKKSLGQNFLVDPNIADKIVDALDLS----EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNP-   76 (262)
T ss_dssp             SC-CGCTSSEEEHHHHHHHHHHHHTCG----TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCS-
T ss_pred             CCCCCCCcCeeCCHHHHHHHHHhcCCC----CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcc-
Confidence            45677887 666778888888877543    78899999999999999999997 699999999999999998776333 


Q ss_pred             CceEEEEeccccccccccc-ccCcccEEEEcCCCC
Q psy17460         98 TNCDAILFEINEKSLDSSV-FKQKVDTVIMNPPFG  131 (216)
Q Consensus        98 ~~v~~~~~d~~~~~~~~~~-~~~~~D~vi~npp~~  131 (216)
                       +++++.+|+  ..+.... .......|++|.||.
T Consensus        77 -~~~vi~~D~--l~~~~~~~~~~~~~~vv~NlPy~  108 (262)
T PF00398_consen   77 -NVEVINGDF--LKWDLYDLLKNQPLLVVGNLPYN  108 (262)
T ss_dssp             -SEEEEES-T--TTSCGGGHCSSSEEEEEEEETGT
T ss_pred             -cceeeecch--hccccHHhhcCCceEEEEEeccc
Confidence             899999999  7765431 113678999999994

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.02  E-value=5.8e-09  Score=77.69  Aligned_cols=114  Identities=20%  Similarity=0.184  Sum_probs=90.6

Q ss_pred             HHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHH
Q psy17460          9 YLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILD   86 (216)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~   86 (216)
                      +++=+..|..+|+.-=...||+..+++.|++.+...    +|.-|||+|.|||.++-.++.+|-  ..++++|.|++...
T Consensus        12 e~~F~k~wi~~PrtVGaI~PsSs~lA~~M~s~I~pe----sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~   87 (194)
T COG3963          12 EISFFKGWIDNPRTVGAILPSSSILARKMASVIDPE----SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVC   87 (194)
T ss_pred             HHHHHHHHhcCCceeeeecCCcHHHHHHHHhccCcc----cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHH
Confidence            344443556666666667999999999999888764    888999999999999999888863  78999999999998


Q ss_pred             HHHHhhhHhCCCceEEEEeccccccccc---ccccCcccEEEEcCCCCCC
Q psy17460         87 IFIDNKNEFEITNCDAILFEINEKSLDS---SVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        87 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~~~D~vi~npp~~~~  133 (216)
                      ...+...     .+++++||+  .++..   +.++..||.|||..|+-..
T Consensus        88 ~L~~~~p-----~~~ii~gda--~~l~~~l~e~~gq~~D~viS~lPll~~  130 (194)
T COG3963          88 HLNQLYP-----GVNIINGDA--FDLRTTLGEHKGQFFDSVISGLPLLNF  130 (194)
T ss_pred             HHHHhCC-----Cccccccch--hhHHHHHhhcCCCeeeeEEeccccccC
Confidence            8777654     577999999  66541   2344689999999998765

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.01  E-value=9.5e-09  Score=89.93  Aligned_cols=84  Identities=17%  Similarity=0.262  Sum_probs=70.5

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ..+|.+|||+|||.|.-+..++.. + .+.|++.|+++..++.++.|++..|+.++.+...|.  ..+.... .+.||.|
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~--~~~~~~~-~~~fD~I  187 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG--RVFGAAL-PETFDAI  187 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch--hhhhhhc-hhhcCeE
Confidence            358899999999999999888775 2 368999999999999999999999998899999999  5543211 1579999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      +.|+|..-.
T Consensus       188 LvDaPCSG~  196 (470)
T PRK11933        188 LLDAPCSGE  196 (470)
T ss_pred             EEcCCCCCC
Confidence            999998854

>KOG1541|consensus

Probab=98.97  E-value=1.4e-08  Score=79.02  Aligned_cols=140  Identities=16%  Similarity=0.202  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS  111 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  111 (216)
                      ++.++.+.++..  +...+.-|||+|||||..+..+...| ..++|+|||+.|++.|...--     .-+++.+|.- .-
T Consensus        35 em~eRaLELLal--p~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~-----egdlil~DMG-~G  105 (270)
T KOG1541|consen   35 EMAERALELLAL--PGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVEREL-----EGDLILCDMG-EG  105 (270)
T ss_pred             HHHHHHHHHhhC--CCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhh-----hcCeeeeecC-CC
Confidence            344444444432  22246689999999999999888888 489999999999999987321     2368888883 33


Q ss_pred             cccccccCcccEEEEcCCCCCC---CCCCC------HHH---HHHHhhcCCc-eEEEeeCcc--hHHHHHHHHHhcCccc
Q psy17460        112 LDSSVFKQKVDTVIMNPPFGTR---NCGID------LAF---VQYAADISKV-VYSLHKTST--RESILKKIQAFKNVEQ  176 (216)
Q Consensus       112 ~~~~~~~~~~D~vi~npp~~~~---~~~~~------~~~---~~~~l~~~~~-ly~~~~~~~--~~~~~~~~~~~l~~~~  176 (216)
                      +|+..  ++||.+|+-....+.   ++..+      ..|   ++.++..+.+ ++-+++.+.  .+.+...+..- +. +
T Consensus       106 lpfrp--GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~a-GF-~  181 (270)
T KOG1541|consen  106 LPFRP--GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKA-GF-G  181 (270)
T ss_pred             CCCCC--CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhh-cc-C
Confidence            45544  899999964444333   11111      123   3445555555 555555443  55566555554 77 6


Q ss_pred             eeeeeeee
Q psy17460        177 VDVIAEMK  184 (216)
Q Consensus       177 g~~~~~~~  184 (216)
                      |-++++..
T Consensus       182 GGlvVd~P  189 (270)
T KOG1541|consen  182 GGLVVDWP  189 (270)
T ss_pred             Cceeeecc
Confidence            66666554

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.95  E-value=3.9e-09  Score=82.34  Aligned_cols=105  Identities=14%  Similarity=0.144  Sum_probs=74.7

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-cccCcccEEEEc
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-VFKQKVDTVIMN  127 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~D~vi~n  127 (216)
                      ...+||+|||.|.+.+.+|...+ ..++|+|+....+..+...+...+++|+.++.+|+  ..+... ...+++|.|+.+
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da--~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDA--RELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-C--TTHHHHHSTTTSEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccH--HHHHhhcccCCchheEEEe
Confidence            33899999999999999888766 89999999999999999999999999999999999  663321 223799999988


Q ss_pred             CCCCCC------CCCCCHHHH---HHHhhcCCceEEEe
Q psy17460        128 PPFGTR------NCGIDLAFV---QYAADISKVVYSLH  156 (216)
Q Consensus       128 pp~~~~------~~~~~~~~~---~~~l~~~~~ly~~~  156 (216)
                      -|=.+.      ++-....++   ...+++++.++..-
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT  133 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence            776654      333445555   45566666554433

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.95  E-value=2.1e-08  Score=77.76  Aligned_cols=69  Identities=26%  Similarity=0.248  Sum_probs=51.2

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc------ccccC
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS------SVFKQ  119 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~~  119 (216)
                      .++.+|||+|||+|.++..++...  ..+|+++|+++.+           ...+++++.+|+  .+...      ....+
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~--~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDF--TDEEVLNKIRERVGDD   97 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeC--CChhHHHHHHHHhCCC
Confidence            578899999999999998877653  3689999999854           123688999998  54320      01125


Q ss_pred             cccEEEEcCC
Q psy17460        120 KVDTVIMNPP  129 (216)
Q Consensus       120 ~~D~vi~npp  129 (216)
                      +||+|+++++
T Consensus        98 ~~D~V~~~~~  107 (188)
T TIGR00438        98 KVDVVMSDAA  107 (188)
T ss_pred             CccEEEcCCC
Confidence            7999999864

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=1.1e-08  Score=86.87  Aligned_cols=97  Identities=18%  Similarity=0.211  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC---CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA---DFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN  108 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~---~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  108 (216)
                      ...+.+...++   ...+|.+|||++++.|.-+..+++...   ..|+++|+++.-+...+.|++..|+.|+.++..|. 
T Consensus       142 d~sS~l~a~~L---~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~-  217 (355)
T COG0144         142 DEASQLPALVL---DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA-  217 (355)
T ss_pred             CHHHHHHHHHc---CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc-
Confidence            45555555444   346899999999999999988887643   35699999999999999999999998889999998 


Q ss_pred             cccccccccc-CcccEEEEcCCCCCC
Q psy17460        109 EKSLDSSVFK-QKVDTVIMNPPFGTR  133 (216)
Q Consensus       109 ~~~~~~~~~~-~~~D~vi~npp~~~~  133 (216)
                       ...+..... ++||.|+.|+|....
T Consensus       218 -~~~~~~~~~~~~fD~iLlDaPCSg~  242 (355)
T COG0144         218 -RRLAELLPGGEKFDRILLDAPCSGT  242 (355)
T ss_pred             -ccccccccccCcCcEEEECCCCCCC
Confidence             554432211 359999999999875

>PLN02823 spermine synthase

Probab=98.91  E-value=2.2e-08  Score=84.22  Aligned_cols=92  Identities=15%  Similarity=0.168  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhC----CCceEEEEecc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFE----ITNCDAILFEI  107 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~----~~~v~~~~~d~  107 (216)
                      +.+.++......  ...+++||.+|+|.|..+.++++.. ..+|+++|+|+++++.|++.+...+    -++++++.+|+
T Consensus        89 YhE~l~h~~l~~--~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da  166 (336)
T PLN02823         89 YHESLVHPALLH--HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA  166 (336)
T ss_pred             HHHHHHhHHHhh--CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh
Confidence            445555443332  2356799999999999999988864 3789999999999999999886432    23799999999


Q ss_pred             cccccccccccCcccEEEEcCC
Q psy17460        108 NEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus       108 ~~~~~~~~~~~~~~D~vi~npp  129 (216)
                        ..+... ..++||+|++|.+
T Consensus       167 --~~~L~~-~~~~yDvIi~D~~  185 (336)
T PLN02823        167 --RAELEK-RDEKFDVIIGDLA  185 (336)
T ss_pred             --HHHHhh-CCCCccEEEecCC
Confidence              776533 2368999999964

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.91  E-value=9.4e-09  Score=81.73  Aligned_cols=103  Identities=13%  Similarity=0.087  Sum_probs=80.7

Q ss_pred             CEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccC-cccEEEEcC
Q psy17460         51 KTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQ-KVDTVIMNP  128 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-~~D~vi~np  128 (216)
                      ..+||||||.|.+.+.+|+..+ ..++|||+....+..|...+...+++|+.++++|+  ..+......+ +.|-|+.|-
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA--~~~l~~~~~~~sl~~I~i~F  127 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDA--VEVLDYLIPDGSLDKIYINF  127 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCH--HHHHHhcCCCCCeeEEEEEC
Confidence            5899999999999999999877 89999999999999999999999998999999999  7765443334 999999987


Q ss_pred             CCCCC------CCCCCHHHHH---HHhhcCCceEEE
Q psy17460        129 PFGTR------NCGIDLAFVQ---YAADISKVVYSL  155 (216)
Q Consensus       129 p~~~~------~~~~~~~~~~---~~l~~~~~ly~~  155 (216)
                      |=.+.      ++-....+++   +.|.+++.++..
T Consensus       128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence            77665      2233444444   445555544443

>PRK04148 hypothetical protein; Provisional

Probab=98.89  E-value=5.8e-08  Score=70.66  Aligned_cols=71  Identities=8%  Similarity=0.112  Sum_probs=56.2

Q ss_pred             CCCCCCEEEEecCCCCH-hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         46 NDIDGKTVLDLGCGSGI-LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~-~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ...++.+|+|+|||+|. ++..+++.|. .|+++|+++++++.++.+       .++++.+|.  ++.....- +.+|+|
T Consensus        13 ~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDl--f~p~~~~y-~~a~li   81 (134)
T PRK04148         13 EKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDL--FNPNLEIY-KNAKLI   81 (134)
T ss_pred             ccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcC--CCCCHHHH-hcCCEE
Confidence            33467899999999996 8888888876 999999999988887665       468999999  76654321 578999


Q ss_pred             EEc
Q psy17460        125 IMN  127 (216)
Q Consensus       125 i~n  127 (216)
                      ++-
T Consensus        82 ysi   84 (134)
T PRK04148         82 YSI   84 (134)
T ss_pred             EEe
Confidence            853

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.89  E-value=3.4e-08  Score=75.63  Aligned_cols=129  Identities=16%  Similarity=0.229  Sum_probs=73.8

Q ss_pred             ccCCHHHHHHHHHHHHh--hcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhC--CC-ce
Q psy17460         27 YHTPPHLAATILHTIQN--NYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFE--IT-NC  100 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~--~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~--~~-~v  100 (216)
                      |+....+...+......  .....++.+|||+|||+|..++.++.. +...|+..|.++ .++.++.|++.|+  .. ++
T Consensus        21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v   99 (173)
T PF10294_consen   21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRV   99 (173)
T ss_dssp             --HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------
T ss_pred             echHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccc
Confidence            44444444444443210  112357899999999999999999988 567999999998 9999999999876  22 68


Q ss_pred             EEEEecccccccc--cccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCcccee
Q psy17460        101 DAILFEINEKSLD--SSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVD  178 (216)
Q Consensus       101 ~~~~~d~~~~~~~--~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~  178 (216)
                      .+...|.  .+..  ......+||+|++.--..                         .....+.+++.....+++ ++.
T Consensus       100 ~v~~L~W--g~~~~~~~~~~~~~D~IlasDv~Y-------------------------~~~~~~~L~~tl~~ll~~-~~~  151 (173)
T PF10294_consen  100 SVRPLDW--GDELDSDLLEPHSFDVILASDVLY-------------------------DEELFEPLVRTLKRLLKP-NGK  151 (173)
T ss_dssp             EEEE--T--TS-HHHHHHS-SSBSEEEEES--S--------------------------GGGHHHHHHHHHHHBTT--TT
T ss_pred             cCcEEEe--cCcccccccccccCCEEEEecccc-------------------------hHHHHHHHHHHHHHHhCC-CCE
Confidence            8888887  3321  111225899999744321                         123345566666777777 666


Q ss_pred             eeeeee
Q psy17460        179 VIAEMK  184 (216)
Q Consensus       179 ~~~~~~  184 (216)
                      +++-+.
T Consensus       152 vl~~~~  157 (173)
T PF10294_consen  152 VLLAYK  157 (173)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            555433

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.88  E-value=4.3e-08  Score=79.02  Aligned_cols=79  Identities=11%  Similarity=0.174  Sum_probs=66.5

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccc-----cC
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVF-----KQ  119 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~-----~~  119 (216)
                      .+.++|||+|+++|..++.++.. +. ++++++|.+++.++.|+.++...|+. +|+++.||+  .+......     .+
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a--~e~L~~l~~~~~~~~  155 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA--LPVLDQMIEDGKYHG  155 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH--HHHHHHHHhccccCC
Confidence            36789999999999999988875 23 69999999999999999999999976 799999999  77543321     25


Q ss_pred             cccEEEEcC
Q psy17460        120 KVDTVIMNP  128 (216)
Q Consensus       120 ~~D~vi~np  128 (216)
                      +||+||.|.
T Consensus       156 ~fD~iFiDa  164 (247)
T PLN02589        156 TFDFIFVDA  164 (247)
T ss_pred             cccEEEecC
Confidence            899999987

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.86  E-value=1.3e-08  Score=83.65  Aligned_cols=82  Identities=17%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             CCEEEEecCCCCHh-HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh-CCC-ceEEEEecccccccccc---cccCcccE
Q psy17460         50 GKTVLDLGCGSGIL-TFGSILLGADFCFALECDKEILDIFIDNKNEF-EIT-NCDAILFEINEKSLDSS---VFKQKVDT  123 (216)
Q Consensus        50 ~~~vlD~g~GtG~~-~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-~~~-~v~~~~~d~~~~~~~~~---~~~~~~D~  123 (216)
                      ..++||+|||..++ .+..++...++++|.|+|+..++.|+.|+..| ++. .|+++...-  ....+.   ...+.||+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~--~~~i~~~i~~~~e~~df  180 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN--PDNIFDGIIQPNERFDF  180 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S--T-SSTTTSTT--S-EEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC--ccccchhhhcccceeeE
Confidence            45899999998875 45544443589999999999999999999999 776 688876643  221111   12368999


Q ss_pred             EEEcCCCCCC
Q psy17460        124 VIMNPPFGTR  133 (216)
Q Consensus       124 vi~npp~~~~  133 (216)
                      ++|||||+..
T Consensus       181 tmCNPPFy~s  190 (299)
T PF05971_consen  181 TMCNPPFYSS  190 (299)
T ss_dssp             EEE-----SS
T ss_pred             EecCCccccC
Confidence            9999999987

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.84  E-value=6.6e-08  Score=79.72  Aligned_cols=97  Identities=20%  Similarity=0.206  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE  109 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  109 (216)
                      .....+...+..   ..++..|||+++|.|.-+..++.. + .+.+++.|+++.-+...+.+++..|..++.+...|.  
T Consensus        71 d~sS~l~~~~L~---~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~--  145 (283)
T PF01189_consen   71 DESSQLVALALD---PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA--  145 (283)
T ss_dssp             HHHHHHHHHHHT---TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH--
T ss_pred             cccccccccccc---ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc--
Confidence            455555554443   358899999999999999887775 3 389999999999999999999999998899888999  


Q ss_pred             cccccccccCcccEEEEcCCCCCC
Q psy17460        110 KSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       110 ~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      ...........||.|+.|+|....
T Consensus       146 ~~~~~~~~~~~fd~VlvDaPCSg~  169 (283)
T PF01189_consen  146 RKLDPKKPESKFDRVLVDAPCSGL  169 (283)
T ss_dssp             HHHHHHHHTTTEEEEEEECSCCCG
T ss_pred             ccccccccccccchhhcCCCccch
Confidence            665322222469999999999875

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.82  E-value=1.6e-08  Score=76.86  Aligned_cols=71  Identities=27%  Similarity=0.312  Sum_probs=63.3

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ...+.|+|+|+|.++..++.. +.+|+++|.+|...+.|.+|+.-.|..|++++.||+  .+..+    +..|+|+|-
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA--~~y~f----e~ADvvicE  103 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA--RDYDF----ENADVVICE  103 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccc--ccccc----cccceeHHH
Confidence            368999999999999998888 679999999999999999999888888999999999  66665    477999883

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.82  E-value=8.3e-08  Score=76.12  Aligned_cols=82  Identities=15%  Similarity=0.098  Sum_probs=60.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH--h----------CCCceEEEEecccccccccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNE--F----------EITNCDAILFEINEKSLDSS  115 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~--~----------~~~~v~~~~~d~~~~~~~~~  115 (216)
                      .++.+||.+|||.|.-...++.+|. .|+|+|+++.+++.+......  .          ...+|++++||+  .++...
T Consensus        36 ~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf--F~l~~~  112 (218)
T PF05724_consen   36 KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF--FELPPE  112 (218)
T ss_dssp             STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T--TTGGGS
T ss_pred             CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc--ccCChh
Confidence            4667999999999999999999986 899999999999998432111  0          112689999999  887754


Q ss_pred             cccCcccEEEEcCCCCCC
Q psy17460        116 VFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       116 ~~~~~~D~vi~npp~~~~  133 (216)
                      .. ++||+|+=.-.|...
T Consensus       113 ~~-g~fD~iyDr~~l~Al  129 (218)
T PF05724_consen  113 DV-GKFDLIYDRTFLCAL  129 (218)
T ss_dssp             CH-HSEEEEEECSSTTTS
T ss_pred             hc-CCceEEEEecccccC
Confidence            32 479999865555544

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.82  E-value=1.7e-08  Score=89.07  Aligned_cols=106  Identities=21%  Similarity=0.250  Sum_probs=85.2

Q ss_pred             cccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-C----CCEEEEEeCChHHHHHHHHhhhHh
Q psy17460         21 KVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-G----ADFCFALECDKEILDIFIDNKNEF   95 (216)
Q Consensus        21 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~----~~~v~~iD~~~~~~~~~~~~~~~~   95 (216)
                      ....++|.||.++.+.|+..+...    +..+|+|+.||+|.+...+... +    ...++|.|+++....+|+.|+-..
T Consensus       162 ~k~~GEfyTP~~v~~liv~~l~~~----~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh  237 (489)
T COG0286         162 GKEAGEFYTPREVSELIVELLDPE----PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH  237 (489)
T ss_pred             CCCCCccCChHHHHHHHHHHcCCC----CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh
Confidence            444699999999999999988762    5569999999999987665543 1    256899999999999999999998


Q ss_pred             CCC-ceEEEEeccccccccccc---ccCcccEEEEcCCCCC
Q psy17460         96 EIT-NCDAILFEINEKSLDSSV---FKQKVDTVIMNPPFGT  132 (216)
Q Consensus        96 ~~~-~v~~~~~d~~~~~~~~~~---~~~~~D~vi~npp~~~  132 (216)
                      +++ ++.+..+|.  ..-+...   ..+.||.|++||||..
T Consensus       238 gi~~~~~i~~~dt--l~~~~~~~~~~~~~~D~viaNPPf~~  276 (489)
T COG0286         238 GIEGDANIRHGDT--LSNPKHDDKDDKGKFDFVIANPPFSG  276 (489)
T ss_pred             CCCcccccccccc--ccCCcccccCCccceeEEEeCCCCCc
Confidence            886 578888888  6554331   2367999999999973

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.81  E-value=2e-08  Score=82.85  Aligned_cols=79  Identities=13%  Similarity=0.072  Sum_probs=63.2

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccccc--Ccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFK--QKV  121 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~~  121 (216)
                      ...++..++|.+||.|..+..+++..+  .+|+|+|.|+++++.++..+..  ..+++++.+|+  .++......  .++
T Consensus        16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f--~~l~~~l~~~~~~v   91 (296)
T PRK00050         16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNF--SNLKEVLAEGLGKV   91 (296)
T ss_pred             CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCH--HHHHHHHHcCCCcc
Confidence            334778999999999999999988753  7999999999999999998865  34899999999  665332211  279


Q ss_pred             cEEEEcC
Q psy17460        122 DTVIMNP  128 (216)
Q Consensus       122 D~vi~np  128 (216)
                      |.|++|.
T Consensus        92 DgIl~DL   98 (296)
T PRK00050         92 DGILLDL   98 (296)
T ss_pred             CEEEECC
Confidence            9999863

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.81  E-value=9.7e-08  Score=75.86  Aligned_cols=100  Identities=11%  Similarity=0.059  Sum_probs=69.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhh------------HhCCCceEEEEecccccccccc-
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKN------------EFEITNCDAILFEINEKSLDSS-  115 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~------------~~~~~~v~~~~~d~~~~~~~~~-  115 (216)
                      ++.+||++|||.|.-...++.+|. .|+|+|+|+.+++.+.+...            ...-.+++++++|+  +++... 
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~--f~l~~~~  119 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI--FNLPKIA  119 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC--cCCCccc
Confidence            567999999999999999999987 79999999999999766211            01111799999999  887532 


Q ss_pred             cccCcccEEEEcCCCCCCCCCCCHH---HHHHHhhcCCc
Q psy17460        116 VFKQKVDTVIMNPPFGTRNCGIDLA---FVQYAADISKV  151 (216)
Q Consensus       116 ~~~~~~D~vi~npp~~~~~~~~~~~---~~~~~l~~~~~  151 (216)
                      ...+.||+|+---.|.......-.+   .+...+.+++.
T Consensus       120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~  158 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQ  158 (226)
T ss_pred             cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence            1225899998666666552222223   33444555544

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.81  E-value=3e-08  Score=83.26  Aligned_cols=100  Identities=15%  Similarity=0.131  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHhhcC-CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh-------CC--C-ce
Q psy17460         32 HLAATILHTIQNNYN-DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF-------EI--T-NC  100 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~-~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-------~~--~-~v  100 (216)
                      ++...++......+. ..++.+|||+|||-|.-..-....+...++|+|++...++.|+.+.+..       ..  . ..
T Consensus        44 wvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a  123 (331)
T PF03291_consen   44 WVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIA  123 (331)
T ss_dssp             HHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEE
T ss_pred             HHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchh
Confidence            555566666554322 2267899999999999888888777789999999999999999988321       11  1 46


Q ss_pred             EEEEeccccccccc----ccccCcccEEEEcCCCCCC
Q psy17460        101 DAILFEINEKSLDS----SVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       101 ~~~~~d~~~~~~~~----~~~~~~~D~vi~npp~~~~  133 (216)
                      .++.+|+  .....    .....+||+|-|...+|..
T Consensus       124 ~f~~~D~--f~~~l~~~~~~~~~~FDvVScQFalHY~  158 (331)
T PF03291_consen  124 EFIAADC--FSESLREKLPPRSRKFDVVSCQFALHYA  158 (331)
T ss_dssp             EEEESTT--CCSHHHCTSSSTTS-EEEEEEES-GGGG
T ss_pred             heecccc--ccchhhhhccccCCCcceeehHHHHHHh
Confidence            7888888  54321    1112489999999999876

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG3010|consensus

Probab=98.78  E-value=1.4e-08  Score=80.04  Aligned_cols=95  Identities=12%  Similarity=-0.018  Sum_probs=66.0

Q ss_pred             EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCC
Q psy17460         52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      .++|+|||+|..++.++.+ ..+|+|+|+++.|++.+++.....-+. ..+....+.  ..+.-.  .+++|+|+|-..+
T Consensus        36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~--v~L~g~--e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEM--VDLLGG--EESVDLITAAQAV  110 (261)
T ss_pred             eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccc--ccccCC--CcceeeehhhhhH
Confidence            8999999999667777777 569999999999999998876554332 234444444  333322  3899999999999


Q ss_pred             CCCCCCCCHHHHHHHhhcCCc
Q psy17460        131 GTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      |+++-..-.+..+++|+..+.
T Consensus       111 HWFdle~fy~~~~rvLRk~Gg  131 (261)
T KOG3010|consen  111 HWFDLERFYKEAYRVLRKDGG  131 (261)
T ss_pred             HhhchHHHHHHHHHHcCCCCC
Confidence            988433333344455555443

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.75  E-value=2e-07  Score=76.48  Aligned_cols=78  Identities=17%  Similarity=0.133  Sum_probs=66.6

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhC----CCceEEEEecccccccccccccCcccE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFE----ITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ..++||-+|.|.|..+.+++++.. .+++.+|||+..++.+++.+....    -++++++.+|.  .++..... ++||+
T Consensus        76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg--~~~v~~~~-~~fDv  152 (282)
T COG0421          76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG--VEFLRDCE-EKFDV  152 (282)
T ss_pred             CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH--HHHHHhCC-CcCCE
Confidence            447999999999999999999976 899999999999999999886654    34799999999  88875542 48999


Q ss_pred             EEEcCC
Q psy17460        124 VIMNPP  129 (216)
Q Consensus       124 vi~npp  129 (216)
                      |++|..
T Consensus       153 Ii~D~t  158 (282)
T COG0421         153 IIVDST  158 (282)
T ss_pred             EEEcCC
Confidence            998753

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.74  E-value=4.6e-07  Score=69.92  Aligned_cols=102  Identities=20%  Similarity=0.239  Sum_probs=73.1

Q ss_pred             CCcccCccccCCHHHHH-HHHHHHHhhcCCC--CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhH
Q psy17460         19 NPKVHLEQYHTPPHLAA-TILHTIQNNYNDI--DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNE   94 (216)
Q Consensus        19 ~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~--~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~   94 (216)
                      |.+.++....+.+.+.. ++++.+... +..  .+.+++|+|+|-|.-++.++-..+ .+++.+|....-+...+.....
T Consensus        16 N~~~NLt~~~~~~~~~~~Hi~DSL~~~-~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~   94 (184)
T PF02527_consen   16 NKKINLTSIRDPEEIWERHILDSLALL-PFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE   94 (184)
T ss_dssp             HHCSSS-S--SHHHHHHHHHHHHHGGG-GCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH
T ss_pred             CceeeeccCCCHHHHHHHHHHHHHHhh-hhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH
Confidence            55666666667777776 444444432 322  233799999999999999887755 7899999999999999999999


Q ss_pred             hCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         95 FEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        95 ~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .+++|++++.+.++  +....   ..||+|++
T Consensus        95 L~L~nv~v~~~R~E--~~~~~---~~fd~v~a  121 (184)
T PF02527_consen   95 LGLSNVEVINGRAE--EPEYR---ESFDVVTA  121 (184)
T ss_dssp             HT-SSEEEEES-HH--HTTTT---T-EEEEEE
T ss_pred             hCCCCEEEEEeeec--ccccC---CCccEEEe
Confidence            99989999999994  42222   79999997

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG1975|consensus

Probab=98.74  E-value=4.9e-08  Score=79.94  Aligned_cols=95  Identities=15%  Similarity=0.160  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC--CC----ceEEEEe
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE--IT----NCDAILF  105 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~--~~----~v~~~~~  105 (216)
                      ++...++.....     ++..++|+|||-|.-.+..-+.|.+.++|+||..-.++.|+++.....  .+    .+.|+.+
T Consensus       105 wIKs~LI~~y~~-----~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~  179 (389)
T KOG1975|consen  105 WIKSVLINLYTK-----RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAA  179 (389)
T ss_pred             HHHHHHHHHHhc-----cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEe
Confidence            455555555554     678899999999999888888877899999999999999999875432  11    3689999


Q ss_pred             cccccccccc----cccCcccEEEEcCCCCCC
Q psy17460        106 EINEKSLDSS----VFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       106 d~~~~~~~~~----~~~~~~D~vi~npp~~~~  133 (216)
                      |+  ......    ....+||+|-|.-.+|..
T Consensus       180 Dc--~~~~l~d~~e~~dp~fDivScQF~~HYa  209 (389)
T KOG1975|consen  180 DC--FKERLMDLLEFKDPRFDIVSCQFAFHYA  209 (389)
T ss_pred             cc--chhHHHHhccCCCCCcceeeeeeeEeee
Confidence            99  542211    122449999999999875

>KOG2915|consensus

Probab=98.73  E-value=6e-07  Score=72.04  Aligned_cols=125  Identities=15%  Similarity=0.120  Sum_probs=92.5

Q ss_pred             HHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccc
Q psy17460         40 TIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSV  116 (216)
Q Consensus        40 ~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~  116 (216)
                      ++..++...+|.+|+|-|+|+|+++.++++. ++ ++++.+|..+...+.|.+.++..++. +++++.-|+  -..-+..
T Consensus        96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV--c~~GF~~  173 (314)
T KOG2915|consen   96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV--CGSGFLI  173 (314)
T ss_pred             HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec--ccCCccc
Confidence            3444445579999999999999999998886 45 89999999999999999999998887 899999999  5544433


Q ss_pred             ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460        117 FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~  171 (216)
                      +...+|.||.|.|=.+    ...-+..++++..+. +.+.-+.+.+.+.+.|...
T Consensus       174 ks~~aDaVFLDlPaPw----~AiPha~~~lk~~g~-r~csFSPCIEQvqrtce~l  223 (314)
T KOG2915|consen  174 KSLKADAVFLDLPAPW----EAIPHAAKILKDEGG-RLCSFSPCIEQVQRTCEAL  223 (314)
T ss_pred             cccccceEEEcCCChh----hhhhhhHHHhhhcCc-eEEeccHHHHHHHHHHHHH
Confidence            3478999999988443    333455666666553 3334445566666555444

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.70  E-value=3.2e-07  Score=72.18  Aligned_cols=112  Identities=19%  Similarity=0.182  Sum_probs=84.0

Q ss_pred             HHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCC--CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCC
Q psy17460          5 HIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDID--GKTVLDLGCGSGILTFGSILLGA-DFCFALECD   81 (216)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~--~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~   81 (216)
                      ...+.+.++     |...++....+++++..+.+...........  +++++|+|+|.|.-++.++-..+ .+|+-+|..
T Consensus        26 ~Y~~lL~~w-----N~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~  100 (215)
T COG0357          26 AYVELLLKW-----NKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESL  100 (215)
T ss_pred             HHHHHHHHh-----hHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccC
Confidence            334455555     5666677777777776655544443334334  58999999999999999885544 679999999


Q ss_pred             hHHHHHHHHhhhHhCCCceEEEEecccccccccccccCc-ccEEEE
Q psy17460         82 KEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK-VDTVIM  126 (216)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~-~D~vi~  126 (216)
                      ..-+...+......+++|++++++.+  .++...   .. ||+|.+
T Consensus       101 ~Kk~~FL~~~~~eL~L~nv~i~~~Ra--E~~~~~---~~~~D~vts  141 (215)
T COG0357         101 GKKIAFLREVKKELGLENVEIVHGRA--EEFGQE---KKQYDVVTS  141 (215)
T ss_pred             chHHHHHHHHHHHhCCCCeEEehhhH--hhcccc---cccCcEEEe
Confidence            99999999999999998899999999  555432   23 999987

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.68  E-value=8e-09  Score=80.77  Aligned_cols=101  Identities=13%  Similarity=0.112  Sum_probs=69.4

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCC
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      =+++||+|||||..+..+... ...+.|+|||.+|++.|...---     =++.++++  ..+......+.||+|+.-. 
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y-----D~L~~Aea--~~Fl~~~~~er~DLi~AaD-  196 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY-----DTLYVAEA--VLFLEDLTQERFDLIVAAD-  196 (287)
T ss_pred             cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch-----HHHHHHHH--HHHhhhccCCcccchhhhh-
Confidence            469999999999999988877 45899999999999998775221     13455555  4443222337899998633 


Q ss_pred             CCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        130 FGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                                     ++-..+         ..+.++..+.+.|.| +|.+.+...
T Consensus       197 ---------------Vl~YlG---------~Le~~~~~aa~~L~~-gGlfaFSvE  226 (287)
T COG4976         197 ---------------VLPYLG---------ALEGLFAGAAGLLAP-GGLFAFSVE  226 (287)
T ss_pred             ---------------HHHhhc---------chhhHHHHHHHhcCC-CceEEEEec
Confidence                           222222         345566667888888 888887544

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.67  E-value=4e-07  Score=73.57  Aligned_cols=94  Identities=17%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCC----CceEEEEecc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEI----TNCDAILFEI  107 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~----~~v~~~~~d~  107 (216)
                      +.+.++......  ..++++||-+|.|.|..+.++.+... .+++++|+|+.+++.|++.+.....    ++++++.+|+
T Consensus        62 y~e~l~h~~~~~--~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg  139 (246)
T PF01564_consen   62 YHEMLVHPPLLL--HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG  139 (246)
T ss_dssp             HHHHHHHHHHHH--SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred             HHHHHhhhHhhc--CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence            445555444433  23688999999999999999998864 7999999999999999998765322    2799999999


Q ss_pred             cccccccccccCcccEEEEcCCC
Q psy17460        108 NEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus       108 ~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                        ..+......++||+|+.|.+-
T Consensus       140 --~~~l~~~~~~~yDvIi~D~~d  160 (246)
T PF01564_consen  140 --RKFLKETQEEKYDVIIVDLTD  160 (246)
T ss_dssp             --HHHHHTSSST-EEEEEEESSS
T ss_pred             --HHHHHhccCCcccEEEEeCCC
Confidence              887654322389999998764

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG2899|consensus

Probab=98.66  E-value=2.2e-07  Score=73.35  Aligned_cols=50  Identities=22%  Similarity=0.296  Sum_probs=43.9

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHh
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEF   95 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~   95 (216)
                      ....++.+||+||-+|.+++.+++. ++..++|+|||+..++.|++++...
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence            3467889999999999999999987 5678999999999999999997653

>KOG2361|consensus

Probab=98.64  E-value=2.1e-07  Score=73.38  Aligned_cols=74  Identities=19%  Similarity=0.356  Sum_probs=56.8

Q ss_pred             EEEEecCCCCHhHHHHhHcCC---CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         52 TVLDLGCGSGILTFGSILLGA---DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~~~~---~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      +||++|||.|.....+.+..+   -.|++.|.+|++++..+++...... ++.....|+...++......+++|+|++
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~-~~~afv~Dlt~~~~~~~~~~~svD~it~  150 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES-RVEAFVWDLTSPSLKEPPEEGSVDIITL  150 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh-hhcccceeccchhccCCCCcCccceEEE
Confidence            799999999999999888643   4899999999999999998766553 6777777774333332333378999887

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.63  E-value=3.5e-07  Score=72.94  Aligned_cols=41  Identities=27%  Similarity=0.390  Sum_probs=37.2

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHH
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDI   87 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~   87 (216)
                      ..++++|||+|||||.++..+++.|+.+|+|+|++++++..
T Consensus        73 ~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        73 DVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            35788999999999999999999988899999999988765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK00536 speE spermidine synthase; Provisional

Probab=98.62  E-value=9.7e-07  Score=71.67  Aligned_cols=112  Identities=16%  Similarity=0.038  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC--C--CceEEEEeccc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE--I--TNCDAILFEIN  108 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~--~--~~v~~~~~d~~  108 (216)
                      +.|.|++..+.  .+..+++||=+|.|.|..+.+++++. .+|+.+|||+++++.+++.+....  .  ++++++.. + 
T Consensus        58 YHEmLvHppl~--~h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~-  132 (262)
T PRK00536         58 ESELLAHMGGC--TKKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L-  132 (262)
T ss_pred             HHHHHHHHHHh--hCCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h-
Confidence            45556555554  34567899999999999999999995 499999999999999999654432  2  26777752 2 


Q ss_pred             ccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCc
Q psy17460        109 EKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTS  159 (216)
Q Consensus       109 ~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~  159 (216)
                       .+.    ..++||+||+|..|...    -.+.++++|..++ +++.+..+
T Consensus       133 -~~~----~~~~fDVIIvDs~~~~~----fy~~~~~~L~~~G-i~v~Qs~s  173 (262)
T PRK00536        133 -LDL----DIKKYDLIICLQEPDIH----KIDGLKRMLKEDG-VFISVAKH  173 (262)
T ss_pred             -hhc----cCCcCCEEEEcCCCChH----HHHHHHHhcCCCc-EEEECCCC
Confidence             211    11689999999654321    1122344555554 45554444

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.57  E-value=4e-07  Score=80.90  Aligned_cols=104  Identities=13%  Similarity=0.037  Sum_probs=78.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .+..+||+|||.|.+...+|...+ ..++|+|+....+..+...+...+++|+.++.+|+  ..+......+++|.|++|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~--~~~~~~~~~~sv~~i~i~  424 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL--DLILNDLPNNSLDGIYIL  424 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHhcCcccccEEEEE
Confidence            466999999999999999998866 89999999999999998888888888999999988  443322333789999999


Q ss_pred             CCCCCC------CCCCCHHH---HHHHhhcCCceEE
Q psy17460        128 PPFGTR------NCGIDLAF---VQYAADISKVVYS  154 (216)
Q Consensus       128 pp~~~~------~~~~~~~~---~~~~l~~~~~ly~  154 (216)
                      -|=.+.      ++-....+   +...+++++.++.
T Consensus       425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~  460 (506)
T PRK01544        425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF  460 (506)
T ss_pred             CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence            887775      22233333   3445555554443

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.57  E-value=1.3e-06  Score=68.55  Aligned_cols=119  Identities=13%  Similarity=0.129  Sum_probs=77.5

Q ss_pred             EEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCC
Q psy17460         53 VLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus        53 vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      |+|+||..|.+++.+++.+. .+++++|+++..++.|+.++...++. +++++.+|-  ++.....  +..|.|+..-.=
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG--L~~l~~~--e~~d~ivIAGMG   76 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDG--LEVLKPG--EDVDTIVIAGMG   76 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SG--GGG--GG--G---EEEEEEE-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCc--ccccCCC--CCCCEEEEecCC
Confidence            68999999999999999987 78999999999999999999999976 699999998  7755332  347888853210


Q ss_pred             CCCCCCCCHHHHHHHhhcCCc--eEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        131 GTRNCGIDLAFVQYAADISKV--VYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~--ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      +    ..-.+.++........  -+.+.|......+    ++||.. +|+.+.+..
T Consensus        77 G----~lI~~ILe~~~~~~~~~~~lILqP~~~~~~L----R~~L~~-~gf~I~~E~  123 (205)
T PF04816_consen   77 G----ELIIEILEAGPEKLSSAKRLILQPNTHAYEL----RRWLYE-NGFEIIDED  123 (205)
T ss_dssp             H----HHHHHHHHHTGGGGTT--EEEEEESS-HHHH----HHHHHH-TTEEEEEEE
T ss_pred             H----HHHHHHHHhhHHHhccCCeEEEeCCCChHHH----HHHHHH-CCCEEEEeE
Confidence            0    0012233333333322  4666666555554    666666 677766554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=98.54  E-value=2e-06  Score=68.40  Aligned_cols=120  Identities=19%  Similarity=0.168  Sum_probs=68.3

Q ss_pred             CEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh----CC-----CceEEEEecccccccccccccCcc
Q psy17460         51 KTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF----EI-----TNCDAILFEINEKSLDSSVFKQKV  121 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~----~~-----~~v~~~~~d~~~~~~~~~~~~~~~  121 (216)
                      .+|||..+|-|.-++.++..|+ +|+++|.||-+..+.+.-++..    ..     .+++++.+|.  .++.. ...++|
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~--~~~L~-~~~~s~  152 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA--LEYLR-QPDNSF  152 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C--CCHCC-CHSS--
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH--HHHHh-hcCCCC
Confidence            3899999999999988888876 8999999998876666543332    11     2699999999  77654 334799


Q ss_pred             cEEEEcCCCCCCCCCCC----HHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460        122 DTVIMNPPFGTRNCGID----LAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD  186 (216)
Q Consensus       122 D~vi~npp~~~~~~~~~----~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  186 (216)
                      |+|++||.|....+.+.    .+.+......         ..+.+++++.+.+.-+.   ++|+..+..
T Consensus       153 DVVY~DPMFp~~~ksa~vkk~m~~lr~L~~~---------d~~~~ell~~Alr~Ar~---RVVvKrp~~  209 (234)
T PF04445_consen  153 DVVYFDPMFPERKKSALVKKEMRVLRDLAGH---------DPDAEELLEEALRVARK---RVVVKRPRK  209 (234)
T ss_dssp             SEEEE--S-----TTTT-SHHHHHHHHHHSH---------HTTGGGGHHHHHHH-SS---EEEEEEETT
T ss_pred             CEEEECCCCCCcccccccccchHHHHHhhcc---------CcCHHHHHHHHHHhcCc---EEEEecCCC
Confidence            99999999998743332    2333332211         22456677788777333   667665543

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=98.54  E-value=4.5e-07  Score=72.86  Aligned_cols=165  Identities=16%  Similarity=0.254  Sum_probs=113.6

Q ss_pred             HHHHhhcccCCCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHH
Q psy17460          9 YLQQLTFNFSNPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILD   86 (216)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~   86 (216)
                      ....+...-+.|...+.| |.||+....+.+-+...  ++..|+.|+-+| -.-..+++++..+ +.+|..+|||+..++
T Consensus       113 kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~R--GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~  189 (354)
T COG1568         113 KFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSR--GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIK  189 (354)
T ss_pred             HHHHHHhcCCCcchhcccccccccceeeeeeeeccc--cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHH
Confidence            334444445556666666 78887655544433332  566899999999 5555566666654 589999999999999


Q ss_pred             HHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc------eEEEeeCcc
Q psy17460         87 IFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV------VYSLHKTST  160 (216)
Q Consensus        87 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~------ly~~~~~~~  160 (216)
                      ...+.++..+.+|++.+..|.  .+..++....+||+.+.|||+...   .-.-|+.+.+..++.      .+.....++
T Consensus       190 fi~k~aee~g~~~ie~~~~Dl--r~plpe~~~~kFDvfiTDPpeTi~---alk~FlgRGI~tLkg~~~aGyfgiT~ress  264 (354)
T COG1568         190 FIEKVAEELGYNNIEAFVFDL--RNPLPEDLKRKFDVFITDPPETIK---ALKLFLGRGIATLKGEGCAGYFGITRRESS  264 (354)
T ss_pred             HHHHHHHHhCccchhheeehh--cccChHHHHhhCCeeecCchhhHH---HHHHHHhccHHHhcCCCccceEeeeecccc
Confidence            999999999998899999999  776666555899999999998643   122355555444433      666666666


Q ss_pred             hHHHHHHHHHhcCccceeeeee
Q psy17460        161 RESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       161 ~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      .....+.-+-.+.. -|+++.+
T Consensus       265 idkW~eiQr~lIn~-~gvVITd  285 (354)
T COG1568         265 IDKWREIQRILINE-MGVVITD  285 (354)
T ss_pred             HHHHHHHHHHHHHh-cCeeeHh
Confidence            66665544434444 5666654

>KOG1663|consensus

Probab=98.52  E-value=2e-06  Score=67.51  Aligned_cols=96  Identities=13%  Similarity=0.064  Sum_probs=73.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc----cccCc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS----VFKQK  120 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~----~~~~~  120 (216)
                      ..++++||+|.=||..++..|..-+  ++|+++|++++.++.+....+..++. +++++++++  .+-..+    ...+.
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a--~esLd~l~~~~~~~t  149 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA--LESLDELLADGESGT  149 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch--hhhHHHHHhcCCCCc
Confidence            4789999999999999988777633  79999999999999999999999987 799999999  664332    22378


Q ss_pred             ccEEEEcCCCCCCCCCCCHHHHHHHhhcCC
Q psy17460        121 VDTVIMNPPFGTRNCGIDLAFVQYAADISK  150 (216)
Q Consensus       121 ~D~vi~npp~~~~~~~~~~~~~~~~l~~~~  150 (216)
                      ||.+|.|.     ++.....++++++.+.+
T Consensus       150 fDfaFvDa-----dK~nY~~y~e~~l~Llr  174 (237)
T KOG1663|consen  150 FDFAFVDA-----DKDNYSNYYERLLRLLR  174 (237)
T ss_pred             eeEEEEcc-----chHHHHHHHHHHHhhcc
Confidence            99999976     33333344555544443

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.45  E-value=1e-06  Score=69.17  Aligned_cols=104  Identities=12%  Similarity=0.016  Sum_probs=69.8

Q ss_pred             cCCHHHHHHHHHHHHhhcCC--CCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHh-CCC-ceEE
Q psy17460         28 HTPPHLAATILHTIQNNYND--IDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEF-EIT-NCDA  102 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~--~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~-~~~-~v~~  102 (216)
                      |....+.-.+.+++..--+.  .++.++||+|.|.-++--.+-.+ .....+|.|+|+-.+..|+.++..| +++ .+++
T Consensus        55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~l  134 (292)
T COG3129          55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRL  134 (292)
T ss_pred             CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeE
Confidence            33344555555555433222  34568999999877764332222 2368999999999999999999888 565 4777


Q ss_pred             EEeccccccccccc---ccCcccEEEEcCCCCCC
Q psy17460        103 ILFEINEKSLDSSV---FKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       103 ~~~d~~~~~~~~~~---~~~~~D~vi~npp~~~~  133 (216)
                      +...-  ....++.   ..+.||+++||||||..
T Consensus       135 r~qk~--~~~if~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         135 RRQKD--SDAIFNGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             EeccC--ccccccccccccceeeeEecCCCcchh
Confidence            66554  4444332   23789999999999975

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.42  E-value=9.7e-07  Score=67.63  Aligned_cols=76  Identities=22%  Similarity=0.265  Sum_probs=66.6

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ...|++|||+|+|+|..++.+++.|+..|++.|++|........|+..|+. ++.+...|.  .--+     ..||+++.
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~--~g~~-----~~~Dl~La  148 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADL--IGSP-----PAFDLLLA  148 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccc--cCCC-----cceeEEEe
Confidence            457899999999999999999999999999999999999999999999998 899999999  6522     68999986


Q ss_pred             cCCC
Q psy17460        127 NPPF  130 (216)
Q Consensus       127 npp~  130 (216)
                      ..-|
T Consensus       149 gDlf  152 (218)
T COG3897         149 GDLF  152 (218)
T ss_pred             ecee
Confidence            4443

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.39  E-value=6e-06  Score=66.43  Aligned_cols=100  Identities=13%  Similarity=0.068  Sum_probs=70.8

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ...+..+|+|+|+|+|.++..+++..+ .+++..|+ |..++.++.      .++++++.||+  .+ +..   . +|++
T Consensus        97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~--f~-~~P---~-~D~~  162 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDF--FD-PLP---V-ADVY  162 (241)
T ss_dssp             TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-T--TT-CCS---S-ESEE
T ss_pred             cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccH--Hh-hhc---c-ccce
Confidence            444567999999999999999988866 89999999 888888888      23899999999  73 222   4 9999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccc--eeeeeee
Q psy17460        125 IMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQ--VDVIAEM  183 (216)
Q Consensus       125 i~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~  183 (216)
                      ++.--+|...                       ......+++.+...|.| +  |++++-.
T Consensus       163 ~l~~vLh~~~-----------------------d~~~~~iL~~~~~al~p-g~~g~llI~e  199 (241)
T PF00891_consen  163 LLRHVLHDWS-----------------------DEDCVKILRNAAAALKP-GKDGRLLIIE  199 (241)
T ss_dssp             EEESSGGGS------------------------HHHHHHHHHHHHHHSEE-CTTEEEEEEE
T ss_pred             eeehhhhhcc-----------------------hHHHHHHHHHHHHHhCC-CCCCeEEEEe
Confidence            9876666441                       12234566667777777 5  6666533

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.38  E-value=1.5e-06  Score=64.12  Aligned_cols=56  Identities=20%  Similarity=0.183  Sum_probs=50.8

Q ss_pred             EEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460         52 TVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI  107 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~  107 (216)
                      +++|+|||+|..+..++..++ .+++++|.++.+++.++.++..++.++++++...+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al   57 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV   57 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence            489999999999999888876 58999999999999999999988877788888888

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=98.37  E-value=5.6e-06  Score=64.41  Aligned_cols=131  Identities=17%  Similarity=0.132  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhH--cCC-CEEEEEeCChHHHHHHHHhhhHh------------
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSIL--LGA-DFCFALECDKEILDIFIDNKNEF------------   95 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~--~~~-~~v~~iD~~~~~~~~~~~~~~~~------------   95 (216)
                      -.++..+++.....+....+-.++|++||.|.+...+..  ... ..|+|.|+|++++++|++|+...            
T Consensus        33 VRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL  112 (246)
T PF11599_consen   33 VRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREEL  112 (246)
T ss_dssp             HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHH
Confidence            367777888887765555667999999999998755433  333 79999999999999999995432            


Q ss_pred             ------------------------------CCCceEEEEeccccccccc---ccccCcccEEEEcCCCCCC-CCCCCHHH
Q psy17460         96 ------------------------------EITNCDAILFEINEKSLDS---SVFKQKVDTVIMNPPFGTR-NCGIDLAF  141 (216)
Q Consensus        96 ------------------------------~~~~v~~~~~d~~~~~~~~---~~~~~~~D~vi~npp~~~~-~~~~~~~~  141 (216)
                                                    +.....+...|+  ++...   .......|+|+.|.||+.+ +....   
T Consensus       113 ~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDv--f~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~---  187 (246)
T PF11599_consen  113 RELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADV--FDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGE---  187 (246)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--T--T-HHHHHHHHTT---SEEEEE--CCCSSSTTS----
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecc--cCCchhhhhccCCCCCEEEecCCCcccccccCC---
Confidence                                          111466788888  66322   1122347999999999988 33221   


Q ss_pred             HHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460        142 VQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA  181 (216)
Q Consensus       142 ~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~  181 (216)
                                    -+.+....++......|.. ++.+++
T Consensus       188 --------------~~~~p~~~ml~~l~~vLp~-~sVV~v  212 (246)
T PF11599_consen  188 --------------GSGGPVAQMLNSLAPVLPE-RSVVAV  212 (246)
T ss_dssp             ----------------HHHHHHHHHHHHCCS-T-T-EEEE
T ss_pred             --------------CCCCcHHHHHHHHHhhCCC-CcEEEE
Confidence                          0111344566667777743 555554

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG1661|consensus

Probab=98.36  E-value=7.9e-06  Score=63.36  Aligned_cols=92  Identities=22%  Similarity=0.285  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC--CEEEEEeCChHHHHHHHHhhhHhC--------CC-
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA--DFCFALECDKEILDIFIDNKNEFE--------IT-   98 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~--~~v~~iD~~~~~~~~~~~~~~~~~--------~~-   98 (216)
                      .++...+++.+...+  .+|.+.||+|+|||.++..++.. ++  ..++|||.-+++++..++|+...-        ++ 
T Consensus        66 p~mha~~le~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~  143 (237)
T KOG1661|consen   66 PHMHATALEYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR  143 (237)
T ss_pred             hHHHHHHHHHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence            466667777776432  48999999999999999777743 33  344999999999999999987643        12 


Q ss_pred             -ceEEEEecccccccccccccCcccEEEEcC
Q psy17460         99 -NCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        99 -~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                       ++.++.||.  .......  .+||.|.+-.
T Consensus       144 ~~l~ivvGDg--r~g~~e~--a~YDaIhvGA  170 (237)
T KOG1661|consen  144 GELSIVVGDG--RKGYAEQ--APYDAIHVGA  170 (237)
T ss_pred             CceEEEeCCc--cccCCcc--CCcceEEEcc
Confidence             688999999  6655443  7999999854

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=5.4e-06  Score=65.56  Aligned_cols=81  Identities=23%  Similarity=0.316  Sum_probs=61.3

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ..+++++||+|+.||.++..+.+.|+.+|+|+|...+++..--++-..    -+.....|+  ..+......+..|+++|
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~r----V~~~E~tN~--r~l~~~~~~~~~d~~v~  150 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPR----VIVLERTNV--RYLTPEDFTEKPDLIVI  150 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCc----EEEEecCCh--hhCCHHHcccCCCeEEE
Confidence            468999999999999999999999999999999998777653333211    244555666  55554444468899999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      +.+|...
T Consensus       151 DvSFISL  157 (245)
T COG1189         151 DVSFISL  157 (245)
T ss_pred             EeehhhH
Confidence            9999743

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.32  E-value=7.9e-06  Score=65.61  Aligned_cols=107  Identities=17%  Similarity=0.175  Sum_probs=76.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ...++||+|+|.|..+..++... .+|++.|+|+.|....++    .|   ++++  |.  .++...  +.+||+|.|--
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~----kg---~~vl--~~--~~w~~~--~~~fDvIscLN  159 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK----KG---FTVL--DI--DDWQQT--DFKFDVISCLN  159 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh----CC---CeEE--eh--hhhhcc--CCceEEEeehh
Confidence            45689999999999999998874 589999999988655433    33   3433  33  223222  25899998722


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCccccccc
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHK  195 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  195 (216)
                                  .++++             ..+..+++..++.|+| +|++++...++...+..+..
T Consensus       160 ------------vLDRc-------------~~P~~LL~~i~~~l~p-~G~lilAvVlP~~pyVE~~~  200 (265)
T PF05219_consen  160 ------------VLDRC-------------DRPLTLLRDIRRALKP-NGRLILAVVLPFRPYVEFGG  200 (265)
T ss_pred             ------------hhhcc-------------CCHHHHHHHHHHHhCC-CCEEEEEEEecccccEEcCC
Confidence                        22222             2445688888889999 99999988888877776655

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.32  E-value=4e-06  Score=70.06  Aligned_cols=133  Identities=11%  Similarity=0.109  Sum_probs=93.0

Q ss_pred             cccCCHHH--HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhH-----hCC
Q psy17460         26 QYHTPPHL--AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNE-----FEI   97 (216)
Q Consensus        26 ~~~t~~~~--~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~-----~~~   97 (216)
                      ||.|..+.  .|.++.-...-  ...-.+||-+|.|.|....++.++. ..+++-+|+||.|++.++++.-.     ..+
T Consensus       266 QfsTrDe~RYhEsLV~pals~--~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf  343 (508)
T COG4262         266 QFSTRDEYRYHESLVYPALSS--VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSF  343 (508)
T ss_pred             eeeechhhhhhheeeeccccc--ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCc
Confidence            56665543  34444333321  1244699999999999999999985 48999999999999999965322     222


Q ss_pred             --CceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCcc
Q psy17460         98 --TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVE  175 (216)
Q Consensus        98 --~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~  175 (216)
                        ++++++..|+  .++.... .+.||.||.|.|-....             ..+++|+.       ++...+++.|++ 
T Consensus       344 ~dpRv~Vv~dDA--f~wlr~a-~~~fD~vIVDl~DP~tp-------------s~~rlYS~-------eFY~ll~~~l~e-  399 (508)
T COG4262         344 SDPRVTVVNDDA--FQWLRTA-ADMFDVVIVDLPDPSTP-------------SIGRLYSV-------EFYRLLSRHLAE-  399 (508)
T ss_pred             cCCeeEEEeccH--HHHHHhh-cccccEEEEeCCCCCCc-------------chhhhhhH-------HHHHHHHHhcCc-
Confidence              2799999999  9987543 36999999988744320             01124443       455667888888 


Q ss_pred             ceeeeeeee
Q psy17460        176 QVDVIAEMK  184 (216)
Q Consensus       176 ~g~~~~~~~  184 (216)
                      +|.++.+.+
T Consensus       400 ~Gl~VvQag  408 (508)
T COG4262         400 TGLMVVQAG  408 (508)
T ss_pred             CceEEEecC
Confidence            999998887

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.30  E-value=3.7e-06  Score=65.56  Aligned_cols=108  Identities=9%  Similarity=0.038  Sum_probs=65.7

Q ss_pred             CCCEEEEecCCCCHh----HHHHhHc-----C-CCEEEEEeCChHHHHHHHHhhhH-------------------hC---
Q psy17460         49 DGKTVLDLGCGSGIL----TFGSILL-----G-ADFCFALECDKEILDIFIDNKNE-------------------FE---   96 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~----~~~~~~~-----~-~~~v~~iD~~~~~~~~~~~~~~~-------------------~~---   96 (216)
                      +.-+||.+||+||-=    ++.+...     + .-+|+|.|+|+.+++.|+.-.-.                   .+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            456999999999973    3333331     1 14999999999999999874100                   01   


Q ss_pred             -C-----CceEEEEecccccc-cccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHH
Q psy17460         97 -I-----TNCDAILFEINEKS-LDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQ  169 (216)
Q Consensus        97 -~-----~~v~~~~~d~~~~~-~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~  169 (216)
                       +     +.|+|...|.  .+ .+..   +.||+|+|---+                       +.+.......+++.+.
T Consensus       111 ~v~~~lr~~V~F~~~NL--~~~~~~~---~~fD~I~CRNVl-----------------------IYF~~~~~~~vl~~l~  162 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNL--LDPDPPF---GRFDLIFCRNVL-----------------------IYFDPETQQRVLRRLH  162 (196)
T ss_dssp             TE-HHHHTTEEEEE--T--T-S---------EEEEEE-SSG-----------------------GGS-HHHHHHHHHHHG
T ss_pred             eEChHHcCceEEEeccc--CCCCccc---CCccEEEecCEE-----------------------EEeCHHHHHHHHHHHH
Confidence             1     1689999999  77 3322   799999994433                       2344455677888889


Q ss_pred             HhcCccceeeeeeeec
Q psy17460        170 AFKNVEQVDVIAEMKY  185 (216)
Q Consensus       170 ~~l~~~~g~~~~~~~~  185 (216)
                      ..|.| +|.+++-..-
T Consensus       163 ~~L~p-gG~L~lG~sE  177 (196)
T PF01739_consen  163 RSLKP-GGYLFLGHSE  177 (196)
T ss_dssp             GGEEE-EEEEEE-TT-
T ss_pred             HHcCC-CCEEEEecCc
Confidence            99999 9999984443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.29  E-value=3.1e-05  Score=63.88  Aligned_cols=109  Identities=14%  Similarity=0.063  Sum_probs=74.6

Q ss_pred             CCEEEEecCCCCHh--H--HHHhHcC-----CCEEEEEeCChHHHHHHHHhhhH-----------------------hC-
Q psy17460         50 GKTVLDLGCGSGIL--T--FGSILLG-----ADFCFALECDKEILDIFIDNKNE-----------------------FE-   96 (216)
Q Consensus        50 ~~~vlD~g~GtG~~--~--~~~~~~~-----~~~v~~iD~~~~~~~~~~~~~~~-----------------------~~-   96 (216)
                      .-+||..||+||-=  +  +.+.+..     ..+|+|+|+|+.+++.|+...-.                       .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            36999999999973  3  3333321     24799999999999999886211                       01 


Q ss_pred             ------C-CceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHH
Q psy17460         97 ------I-TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQ  169 (216)
Q Consensus        97 ------~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~  169 (216)
                            + ..|+|...|.  .+.++.. .+.||+|+|---                       ++.+.......+++.+.
T Consensus       196 ~~v~~~lr~~V~F~~~NL--~~~~~~~-~~~fD~I~cRNv-----------------------liyF~~~~~~~vl~~l~  249 (287)
T PRK10611        196 VRVRQELANYVDFQQLNL--LAKQWAV-PGPFDAIFCRNV-----------------------MIYFDKTTQERILRRFV  249 (287)
T ss_pred             EEEChHHHccCEEEcccC--CCCCCcc-CCCcceeeHhhH-----------------------HhcCCHHHHHHHHHHHH
Confidence                  1 1578999999  6643221 168999998432                       23344456678888889


Q ss_pred             HhcCccceeeeeeeec
Q psy17460        170 AFKNVEQVDVIAEMKY  185 (216)
Q Consensus       170 ~~l~~~~g~~~~~~~~  185 (216)
                      +.|+| +|.+++-+.-
T Consensus       250 ~~L~p-gG~L~lG~sE  264 (287)
T PRK10611        250 PLLKP-DGLLFAGHSE  264 (287)
T ss_pred             HHhCC-CcEEEEeCcc
Confidence            99999 9988885543

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.29  E-value=4.6e-06  Score=65.37  Aligned_cols=114  Identities=14%  Similarity=0.062  Sum_probs=77.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ...+.||.|||.|.++..++..-+.+|..+|..+..++.|++.+......-.++++.-.  .++.+..  .+||+|-+.=
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL--Q~f~P~~--~~YDlIW~QW  130 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL--QDFTPEE--GKYDLIWIQW  130 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G--GG----T--T-EEEEEEES
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH--hhccCCC--CcEeEEEehH
Confidence            35699999999999998776665689999999999999999877653222467888888  6665442  6999998843


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCcc
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQS  190 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  190 (216)
                      ...+.                       +..+.-.+++.|++.|+| +|.+++..+......
T Consensus       131 ~lghL-----------------------TD~dlv~fL~RCk~~L~~-~G~IvvKEN~~~~~~  168 (218)
T PF05891_consen  131 CLGHL-----------------------TDEDLVAFLKRCKQALKP-NGVIVVKENVSSSGF  168 (218)
T ss_dssp             -GGGS------------------------HHHHHHHHHHHHHHEEE-EEEEEEEEEEESSSE
T ss_pred             hhccC-----------------------CHHHHHHHHHHHHHhCcC-CcEEEEEecCCCCCC
Confidence            32222                       222455677888999999 999999888655443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG1122|consensus

Probab=98.29  E-value=7.6e-06  Score=69.47  Aligned_cols=85  Identities=19%  Similarity=0.282  Sum_probs=71.6

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      .+.+|.+|||++|..|.-+.++|..  +.+.|++-|.+.+.+...+.|+...|+.+.-+.+.|.  .+++.....++||.
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~--~ef~~~~~~~~fDR  315 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDG--REFPEKEFPGSFDR  315 (460)
T ss_pred             CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCc--ccccccccCcccce
Confidence            4568999999999999988766553  3478999999999999999999999998888999999  77664333358999


Q ss_pred             EEEcCCCCC
Q psy17460        124 VIMNPPFGT  132 (216)
Q Consensus       124 vi~npp~~~  132 (216)
                      |+.|.|..-
T Consensus       316 VLLDAPCSG  324 (460)
T KOG1122|consen  316 VLLDAPCSG  324 (460)
T ss_pred             eeecCCCCC
Confidence            999999877

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.28  E-value=2.6e-06  Score=66.85  Aligned_cols=85  Identities=21%  Similarity=0.256  Sum_probs=52.4

Q ss_pred             hhcCCCCCCEEEEecCCCCHhHHHHhH-cCCCEEEEEeCChHHHHHHHHhhhH-------hCCC--ceEEEEeccccccc
Q psy17460         43 NNYNDIDGKTVLDLGCGSGILTFGSIL-LGADFCFALECDKEILDIFIDNKNE-------FEIT--NCDAILFEINEKSL  112 (216)
Q Consensus        43 ~~~~~~~~~~vlD~g~GtG~~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~~~~-------~~~~--~v~~~~~d~~~~~~  112 (216)
                      ..++..++++.+|+|||.|...+.++. .+..+++|||+.+...+.|....+.       .+..  ++++..+|+  .+.
T Consensus        36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf--l~~  113 (205)
T PF08123_consen   36 DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF--LDP  113 (205)
T ss_dssp             HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T--TTH
T ss_pred             HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc--ccc
Confidence            344556788999999999999876554 4567799999999998887764432       2332  689999999  664


Q ss_pred             cccc-ccCcccEEEEcCC
Q psy17460        113 DSSV-FKQKVDTVIMNPP  129 (216)
Q Consensus       113 ~~~~-~~~~~D~vi~npp  129 (216)
                      .... .-...|+|++|--
T Consensus       114 ~~~~~~~s~AdvVf~Nn~  131 (205)
T PF08123_consen  114 DFVKDIWSDADVVFVNNT  131 (205)
T ss_dssp             HHHHHHGHC-SEEEE--T
T ss_pred             HhHhhhhcCCCEEEEecc
Confidence            4221 0135799999863

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.24  E-value=3.4e-05  Score=62.88  Aligned_cols=107  Identities=12%  Similarity=0.034  Sum_probs=78.8

Q ss_pred             CCEEEEecCCCCH----hHHHHhHcC------CCEEEEEeCChHHHHHHHHhhhH-----h----------------C--
Q psy17460         50 GKTVLDLGCGSGI----LTFGSILLG------ADFCFALECDKEILDIFIDNKNE-----F----------------E--   96 (216)
Q Consensus        50 ~~~vlD~g~GtG~----~~~~~~~~~------~~~v~~iD~~~~~~~~~~~~~~~-----~----------------~--   96 (216)
                      .-+||.+||+||-    +++.+.+.+      .-+|+|.|||..+++.|+.-.-.     .                +  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5699999999996    333344433      26899999999999988874211     0                1  


Q ss_pred             -----C-CceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHH
Q psy17460         97 -----I-TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQA  170 (216)
Q Consensus        97 -----~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~  170 (216)
                           + ..|.|-..|.  ..-.+.  .+.||+|+|                       +++.+.+...+...++..+..
T Consensus       177 ~v~~~ir~~V~F~~~NL--l~~~~~--~~~fD~IfC-----------------------RNVLIYFd~~~q~~il~~f~~  229 (268)
T COG1352         177 RVKEELRKMVRFRRHNL--LDDSPF--LGKFDLIFC-----------------------RNVLIYFDEETQERILRRFAD  229 (268)
T ss_pred             EEChHHhcccEEeecCC--CCCccc--cCCCCEEEE-----------------------cceEEeeCHHHHHHHHHHHHH
Confidence                 1 1478888888  655521  268999998                       347777888889999999999


Q ss_pred             hcCccceeeeeeee
Q psy17460        171 FKNVEQVDVIAEMK  184 (216)
Q Consensus       171 ~l~~~~g~~~~~~~  184 (216)
                      .|++ +|.+++=+.
T Consensus       230 ~L~~-gG~LflG~s  242 (268)
T COG1352         230 SLKP-GGLLFLGHS  242 (268)
T ss_pred             HhCC-CCEEEEccC
Confidence            9999 999998333

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=5.1e-05  Score=59.16  Aligned_cols=83  Identities=18%  Similarity=0.064  Sum_probs=55.9

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc
Q psy17460         37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS  114 (216)
Q Consensus        37 ~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  114 (216)
                      +.......--..++.+|+|+||..|..+..+++. ++ ..|+|+|+.|           ....+++.++++|+.+.+...
T Consensus        33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-----------~~~~~~V~~iq~d~~~~~~~~  101 (205)
T COG0293          33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-----------MKPIPGVIFLQGDITDEDTLE  101 (205)
T ss_pred             HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-----------cccCCCceEEeeeccCccHHH
Confidence            3343333312346789999999999999888876 33 5699999988           233347999999993322221


Q ss_pred             c----cccCcccEEEEcCCC
Q psy17460        115 S----VFKQKVDTVIMNPPF  130 (216)
Q Consensus       115 ~----~~~~~~D~vi~npp~  130 (216)
                      .    ....++|+|++|+.=
T Consensus       102 ~l~~~l~~~~~DvV~sD~ap  121 (205)
T COG0293         102 KLLEALGGAPVDVVLSDMAP  121 (205)
T ss_pred             HHHHHcCCCCcceEEecCCC
Confidence            1    122457999988754

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.20  E-value=2.1e-05  Score=61.34  Aligned_cols=125  Identities=11%  Similarity=0.076  Sum_probs=83.0

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCce-EEEEeccccccccc
Q psy17460         37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNC-DAILFEINEKSLDS  114 (216)
Q Consensus        37 ~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~  114 (216)
                      +++.+...++. .+.+|||+|||||.-+..++...+ ......|.+++........+...+.+|+ ..+.-|+....++.
T Consensus        14 Il~vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~   92 (204)
T PF06080_consen   14 ILEVLKQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW   92 (204)
T ss_pred             HHHHHHHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence            44444443321 333699999999999999988866 6778999999998888887777777654 46777873332333


Q ss_pred             cc----ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460        115 SV----FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD  186 (216)
Q Consensus       115 ~~----~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  186 (216)
                      ..    ..++||+|+|--..|.+.                       -...+.+++.+.+.|++ +|.+++--.|.
T Consensus        93 ~~~~~~~~~~~D~i~~~N~lHI~p-----------------------~~~~~~lf~~a~~~L~~-gG~L~~YGPF~  144 (204)
T PF06080_consen   93 ELPAPLSPESFDAIFCINMLHISP-----------------------WSAVEGLFAGAARLLKP-GGLLFLYGPFN  144 (204)
T ss_pred             ccccccCCCCcceeeehhHHHhcC-----------------------HHHHHHHHHHHHHhCCC-CCEEEEeCCcc
Confidence            21    236899999976666442                       12234566667777777 77766644443

The function of this family is unknown.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.19  E-value=1.9e-05  Score=58.41  Aligned_cols=74  Identities=19%  Similarity=0.244  Sum_probs=56.9

Q ss_pred             CCCCEEEEecCCCCHhHHHHhH-----cCCCEEEEEeCChHHHHHHHHhhhHhC--C-CceEEEEecccccccccccccC
Q psy17460         48 IDGKTVLDLGCGSGILTFGSIL-----LGADFCFALECDKEILDIFIDNKNEFE--I-TNCDAILFEINEKSLDSSVFKQ  119 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~-----~~~~~v~~iD~~~~~~~~~~~~~~~~~--~-~~v~~~~~d~~~~~~~~~~~~~  119 (216)
                      .+...|+|+|||.|.++..++.     ....+|+|+|.++..++.+....+..+  . .++.+..++.  ......   .
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~   98 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI--ADESSS---D   98 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch--hhhccc---C
Confidence            4677999999999999999888     434799999999999999999888776  3 2577777776  433221   4


Q ss_pred             cccEEEE
Q psy17460        120 KVDTVIM  126 (216)
Q Consensus       120 ~~D~vi~  126 (216)
                      ..++++.
T Consensus        99 ~~~~~vg  105 (141)
T PF13679_consen   99 PPDILVG  105 (141)
T ss_pred             CCeEEEE
Confidence            5666664

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.18  E-value=1.1e-05  Score=62.12  Aligned_cols=72  Identities=24%  Similarity=0.219  Sum_probs=46.6

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc-----c-c--cc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS-----S-V--FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~-~--~~  118 (216)
                      .+.+|||+||++|.++..+++++  ...|+|+|+.+.           ...+++..+.+|+  .+...     . .  ..
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~--~~~~~~~~i~~~~~~~~   89 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDI--TNPENIKDIRKLLPESG   89 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGG--EEEEHSHHGGGSHGTTT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeeccc--chhhHHHhhhhhccccc
Confidence            45899999999999999999987  489999999874           1223567777776  43211     1 1  11


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      +++|+|+||......
T Consensus        90 ~~~dlv~~D~~~~~~  104 (181)
T PF01728_consen   90 EKFDLVLSDMAPNVS  104 (181)
T ss_dssp             CSESEEEE-------
T ss_pred             cCcceeccccccCCC
Confidence            589999999854443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.15  E-value=6.6e-05  Score=58.80  Aligned_cols=76  Identities=16%  Similarity=0.155  Sum_probs=64.6

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .+..++|+||-.|.++..+.+.+. ..+++.|+++..++.|.+++..+++. .++...+|-  .......  ..+|.|+.
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg--l~~l~~~--d~~d~ivI   91 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG--LAVLELE--DEIDVIVI   91 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC--ccccCcc--CCcCEEEE
Confidence            455699999999999999999876 89999999999999999999998876 799999998  6655432  47999986


Q ss_pred             cC
Q psy17460        127 NP  128 (216)
Q Consensus       127 np  128 (216)
                      .-
T Consensus        92 AG   93 (226)
T COG2384          92 AG   93 (226)
T ss_pred             eC
Confidence            43

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.11  E-value=1.3e-05  Score=60.56  Aligned_cols=74  Identities=12%  Similarity=-0.027  Sum_probs=50.2

Q ss_pred             EEEeCChHHHHHHHHhhhHhC---CCceEEEEecccccccccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460         76 FALECDKEILDIFIDNKNEFE---ITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKV  151 (216)
Q Consensus        76 ~~iD~~~~~~~~~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~  151 (216)
                      .|+|+|++|++.|+++.....   ..+++++.+|+  .+++...  ++||+|++.--+++. ++....+-+.+++++++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~--~~lp~~~--~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~   76 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA--IDLPFDD--CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSR   76 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech--hhCCCCC--CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeE
Confidence            489999999999987764322   23799999999  7777643  689999996555443 333334444555555555


Q ss_pred             eE
Q psy17460        152 VY  153 (216)
Q Consensus       152 ly  153 (216)
                      ++
T Consensus        77 l~   78 (160)
T PLN02232         77 VS   78 (160)
T ss_pred             EE
Confidence            33

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.11  E-value=1.9e-05  Score=65.41  Aligned_cols=79  Identities=13%  Similarity=0.116  Sum_probs=62.6

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc---ccCcc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV---FKQKV  121 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~~  121 (216)
                      ...++..++|..+|.|.-+..+++.. .++|+|+|.|+.+++.++..+...+ .++.++.+++  .++....   ..+++
T Consensus        17 ~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF--~~l~~~l~~~~~~~v   93 (305)
T TIGR00006        17 NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNF--ANFFEHLDELLVTKI   93 (305)
T ss_pred             CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCH--HHHHHHHHhcCCCcc
Confidence            33477899999999999999988763 4799999999999999999887653 2799999999  5543211   22579


Q ss_pred             cEEEEc
Q psy17460        122 DTVIMN  127 (216)
Q Consensus       122 D~vi~n  127 (216)
                      |.|+.|
T Consensus        94 DgIl~D   99 (305)
T TIGR00006        94 DGILVD   99 (305)
T ss_pred             cEEEEe
Confidence            999976

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.05  E-value=0.00015  Score=59.16  Aligned_cols=107  Identities=12%  Similarity=0.038  Sum_probs=76.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC---CCEEEEEeCChHHHHHHHHhhhHhCCCce-EEEEeccccccccccc-ccCcccE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG---ADFCFALECDKEILDIFIDNKNEFEITNC-DAILFEINEKSLDSSV-FKQKVDT  123 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~---~~~v~~iD~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~-~~~~~D~  123 (216)
                      ..-+|+|+.||.|...+.+....   +..|...|.++..++..+..+...++.++ +|.++|+  ++..... ....+|+
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dA--fd~~~l~~l~p~P~l  212 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDA--FDRDSLAALDPAPTL  212 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCC--CCHhHhhccCCCCCE
Confidence            55699999999999988866653   26899999999999999999999999875 9999999  7753221 1145799


Q ss_pred             EEEcCCCCCC-CCCCC---HHHHHHHhhcCCc-eEEEee
Q psy17460        124 VIMNPPFGTR-NCGID---LAFVQYAADISKV-VYSLHK  157 (216)
Q Consensus       124 vi~npp~~~~-~~~~~---~~~~~~~l~~~~~-ly~~~~  157 (216)
                      ++..-=|..+ +....   ...+..++.+++. +|.-.+
T Consensus       213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQP  251 (311)
T PF12147_consen  213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQP  251 (311)
T ss_pred             EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            9987777665 22211   2334455555554 444443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK11524 putative methyltransferase; Provisional

Probab=98.04  E-value=1.7e-05  Score=65.53  Aligned_cols=57  Identities=19%  Similarity=0.117  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNE   94 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~   94 (216)
                      .+.+.++....     .+|+.|||++||+|+.++++.+.+. +.+|+|++++.++.|+.++..
T Consensus       196 ~L~erlI~~~S-----~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        196 ALLKRIILASS-----NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHhC-----CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence            44444444443     3799999999999999999999887 899999999999999999864

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.04  E-value=9.4e-05  Score=60.81  Aligned_cols=142  Identities=13%  Similarity=0.088  Sum_probs=83.6

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc
Q psy17460         36 TILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD  113 (216)
Q Consensus        36 ~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  113 (216)
                      .++..+...++...+.+|||+|||+|.....+....  ...++++|.|+.+++.++..+.............+.. .+..
T Consensus        20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~   98 (274)
T PF09243_consen   20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLY-RDFL   98 (274)
T ss_pred             HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhh-cccc
Confidence            444555544456778899999999999776655542  3689999999999999998776533211111111120 1111


Q ss_pred             cccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCc--chHHHHHHHHHhcCccceeeee
Q psy17460        114 SSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTS--TRESILKKIQAFKNVEQVDVIA  181 (216)
Q Consensus       114 ~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~--~~~~~~~~~~~~l~~~~g~~~~  181 (216)
                       ..  ...|+|++.-.+.......-..+++...........+....  .....+..+++.|...++.++.
T Consensus        99 -~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~A  165 (274)
T PF09243_consen   99 -PF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAPVLVLVEPGTPAGFRRIAEARDQLLEKGAHVVA  165 (274)
T ss_pred             -cC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccCcEEEEcCCChHHHHHHHHHHHHHhhCCCceEC
Confidence             11  24499999655555533333446666655555533333333  4677777888877551334433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=98.04  E-value=1.8e-05  Score=62.51  Aligned_cols=55  Identities=29%  Similarity=0.379  Sum_probs=42.9

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHH
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFID   90 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~   90 (216)
                      |..+.+.++.....     +|+.|||++||+|+.+.++.+.+. +.+|+|++++.++.|++
T Consensus       177 P~~l~~~lI~~~t~-----~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKASTN-----PGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHHS------TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhhhc-----cceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence            45666666665543     689999999999999999999987 89999999999998874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.04  E-value=3.6e-05  Score=59.97  Aligned_cols=74  Identities=14%  Similarity=0.184  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc
Q psy17460         34 AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD  113 (216)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  113 (216)
                      ...++..+...   .++.+|.|+|||.+.++..+..  .-.|+..|+-.           .    +-.+..+|.  .+.|
T Consensus        60 vd~iI~~l~~~---~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva-----------~----n~~Vtacdi--a~vP  117 (219)
T PF05148_consen   60 VDVIIEWLKKR---PKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA-----------P----NPRVTACDI--ANVP  117 (219)
T ss_dssp             HHHHHHHHCTS----TTS-EEEES-TT-HHHHH--S-----EEEEESS------------S----STTEEES-T--TS-S
T ss_pred             HHHHHHHHHhc---CCCEEEEECCCchHHHHHhccc--CceEEEeeccC-----------C----CCCEEEecC--ccCc
Confidence            34455555532   2456999999999999854332  23799999864           1    335788999  8988


Q ss_pred             cccccCcccEEEEcCCCC
Q psy17460        114 SSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       114 ~~~~~~~~D~vi~npp~~  131 (216)
                      ..+  +++|++|++....
T Consensus       118 L~~--~svDv~VfcLSLM  133 (219)
T PF05148_consen  118 LED--ESVDVAVFCLSLM  133 (219)
T ss_dssp             --T--T-EEEEEEES---
T ss_pred             CCC--CceeEEEEEhhhh
Confidence            876  8999999987654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=98.01  E-value=3e-05  Score=69.02  Aligned_cols=107  Identities=18%  Similarity=0.250  Sum_probs=76.1

Q ss_pred             cCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc---C--CCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460         23 HLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL---G--ADFCFALECDKEILDIFIDNKNEFEI   97 (216)
Q Consensus        23 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~---~--~~~v~~iD~~~~~~~~~~~~~~~~~~   97 (216)
                      ..+++.||.++...++..+...  ..++..|.|+.||+|.+.......   +  ...++|.++.+++...++.|+...+.
T Consensus       193 ~~g~~~Tp~~Iv~l~~~~~~~~--~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~  270 (501)
T TIGR00497       193 SGGEFFTPQDISELLARIAIGK--KDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI  270 (501)
T ss_pred             cCceeeCcHHHHHHHHHHhccC--CCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence            4678899999998887766532  125568999999999988765431   2  15799999999999999999766554


Q ss_pred             C--ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         98 T--NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        98 ~--~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      .  ......+|.  ...+......+||.|++||||...
T Consensus       271 ~~~t~~~~~~dt--l~~~d~~~~~~~D~v~~NpPf~~~  306 (501)
T TIGR00497       271 DYANFNIINADT--LTTKEWENENGFEVVVSNPPYSIS  306 (501)
T ss_pred             CccccCcccCCc--CCCccccccccCCEEeecCCcccc
Confidence            2  344545665  443211122579999999999864

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.97  E-value=2.5e-05  Score=64.25  Aligned_cols=74  Identities=24%  Similarity=0.242  Sum_probs=59.1

Q ss_pred             EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460         52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      +++|++||.|.++..+...|...++++|+++.+++..+.|...      .++.+|+  .++........+|++++.||+.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di--~~~~~~~~~~~~D~l~~gpPCq   73 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDI--TKIDEKDFIPDIDLLTGGFPCQ   73 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------CCccCcc--ccCchhhcCCCCCEEEeCCCCh
Confidence            6899999999999888888877889999999999998888742      2677888  5544322125799999999998


Q ss_pred             CC
Q psy17460        132 TR  133 (216)
Q Consensus       132 ~~  133 (216)
                      ..
T Consensus        74 ~f   75 (275)
T cd00315          74 PF   75 (275)
T ss_pred             hh
Confidence            65

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK13699 putative methylase; Provisional

Probab=97.89  E-value=6.1e-05  Score=60.19  Aligned_cols=59  Identities=14%  Similarity=0.075  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF   95 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~   95 (216)
                      ..+.+.++....     .+|+.|||++||+|+.+.++.+.+. +.+|+|++++..+.+.+++...
T Consensus       150 ~~l~~~~i~~~s-----~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        150 VTSLQPLIESFT-----HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHHhC-----CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence            345444444333     3788999999999999999998877 8999999999999999988653

>PHA01634 hypothetical protein

Probab=97.88  E-value=9.2e-05  Score=53.02  Aligned_cols=74  Identities=19%  Similarity=0.258  Sum_probs=55.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ..+++|+|+|++.|..++.++..|+..|+++|.++...+..+.+.+.+.+-+--...+..     +..-  +.||+.+++
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW-----~~~Y--~~~Di~~iD   99 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEW-----NGEY--EDVDIFVMD   99 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccc-----cccC--CCcceEEEE
Confidence            478999999999999999999999999999999999999999988765321111122222     2111  678888874


Q ss_pred             C
Q psy17460        128 P  128 (216)
Q Consensus       128 p  128 (216)
                      -
T Consensus       100 C  100 (156)
T PHA01634        100 C  100 (156)
T ss_pred             c
Confidence            3

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.88  E-value=0.00016  Score=60.62  Aligned_cols=70  Identities=16%  Similarity=0.248  Sum_probs=53.9

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .+|.+++|+||++|.++..++++|. +|++||..+ +-    ..+..  .++|+.+.+|.  ..+...  .+.+|.++||
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~--~~~V~h~~~d~--fr~~p~--~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMD--TGQVEHLRADG--FKFRPP--RKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhC--CCCEEEEeccC--cccCCC--CCCCCEEEEe
Confidence            5789999999999999999999987 999999654 11    11222  22789999988  776542  2789999998


Q ss_pred             CC
Q psy17460        128 PP  129 (216)
Q Consensus       128 pp  129 (216)
                      .-
T Consensus       278 mv  279 (357)
T PRK11760        278 MV  279 (357)
T ss_pred             cc
Confidence            64

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.87  E-value=0.00085  Score=54.92  Aligned_cols=145  Identities=15%  Similarity=0.196  Sum_probs=78.2

Q ss_pred             cccCCCcccCccccCCHHHHHHHH---HHHHhhcCCCCCCEEEEecCCCCHhH-HHHhHc-CC-CEEEEEeCChHHHHHH
Q psy17460         15 FNFSNPKVHLEQYHTPPHLAATIL---HTIQNNYNDIDGKTVLDLGCGSGILT-FGSILL-GA-DFCFALECDKEILDIF   88 (216)
Q Consensus        15 ~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~~~~~~vlD~g~GtG~~~-~~~~~~-~~-~~v~~iD~~~~~~~~~   88 (216)
                      ....+|...+..|+--..+....-   ..+... ....+.+|+=+|||.=-++ +.+++. +. ..|+++|+|+.+++.+
T Consensus        84 ~~~~~p~~~L~~FpYy~nY~~L~~lE~~~l~~~-~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a  162 (276)
T PF03059_consen   84 LASDNPLDHLESFPYYPNYEKLVRLEYAALRIH-AGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELA  162 (276)
T ss_dssp             HH-SSHHHHHHTSTTHHHHHHHHHHHHH-HTT---TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHH
T ss_pred             HhCCCHHHHHhcCCcHHHHHHHHHHHHHHHhhc-CCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence            444566666777776564443333   333222 1113459999999976665 555543 43 5899999999999999


Q ss_pred             HHhhh-HhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHH
Q psy17460         89 IDNKN-EFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILK  166 (216)
Q Consensus        89 ~~~~~-~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~  166 (216)
                      ++.+. ..++. +++|+.+|+  .+.....  ..||+|+...--+                        ........++.
T Consensus       163 ~~lv~~~~~L~~~m~f~~~d~--~~~~~dl--~~~DvV~lAalVg------------------------~~~e~K~~Il~  214 (276)
T PF03059_consen  163 RRLVASDLGLSKRMSFITADV--LDVTYDL--KEYDVVFLAALVG------------------------MDAEPKEEILE  214 (276)
T ss_dssp             HHHHH---HH-SSEEEEES-G--GGG-GG------SEEEE-TT-S----------------------------SHHHHHH
T ss_pred             HHHHhhcccccCCeEEEecch--hcccccc--ccCCEEEEhhhcc------------------------cccchHHHHHH
Confidence            98776 34444 699999999  7765443  6899998733111                        01123567777


Q ss_pred             HHHHhcCccceeeeeeeecCCCc
Q psy17460        167 KIQAFKNVEQVDVIAEMKYDLNQ  189 (216)
Q Consensus       167 ~~~~~l~~~~g~~~~~~~~~~~~  189 (216)
                      ...+.+.+ ++.+++...-...+
T Consensus       215 ~l~~~m~~-ga~l~~Rsa~GlR~  236 (276)
T PF03059_consen  215 HLAKHMAP-GARLVVRSAHGLRS  236 (276)
T ss_dssp             HHHHHS-T-TSEEEEEE--GGGG
T ss_pred             HHHhhCCC-CcEEEEecchhhHH
Confidence            77777788 88888876644444

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.84  E-value=0.00065  Score=55.44  Aligned_cols=38  Identities=26%  Similarity=0.141  Sum_probs=33.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHH
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILD   86 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~   86 (216)
                      ..+.+||-+|||.|.++.+++..|. .+.|.|.|.-|+-
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll   92 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLL   92 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHH
Confidence            3456999999999999999999988 8999999988853

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG3045|consensus

Probab=97.81  E-value=0.00012  Score=58.73  Aligned_cols=60  Identities=13%  Similarity=0.230  Sum_probs=47.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ...+|.|+|||.+-++.    .-..+|+.+|+-.           .    +-.++.+|.  .++|..+  ++.|+++++.
T Consensus       180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a-----------~----~~~V~~cDm--~~vPl~d--~svDvaV~CL  236 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVA-----------V----NERVIACDM--RNVPLED--ESVDVAVFCL  236 (325)
T ss_pred             CceEEEecccchhhhhh----ccccceeeeeeec-----------C----CCceeeccc--cCCcCcc--CcccEEEeeH
Confidence            45699999999999876    2236899999864           1    567899999  8888876  8999999977


Q ss_pred             CCC
Q psy17460        129 PFG  131 (216)
Q Consensus       129 p~~  131 (216)
                      +..
T Consensus       237 SLM  239 (325)
T KOG3045|consen  237 SLM  239 (325)
T ss_pred             hhh
Confidence            654

>KOG2940|consensus

Probab=97.68  E-value=0.00013  Score=57.56  Aligned_cols=79  Identities=16%  Similarity=0.183  Sum_probs=62.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ....++|+|||.|.+...+...+-.+++-+|-|..|++.++.--. .++ .+....+|-  ..+++..  +++|+|++..
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i-~~~~~v~DE--E~Ldf~e--ns~DLiisSl  145 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSI-ETSYFVGDE--EFLDFKE--NSVDLIISSL  145 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cce-EEEEEecch--hcccccc--cchhhhhhhh
Confidence            345799999999999999888877899999999999999877532 233 466777887  4444443  7999999998


Q ss_pred             CCCCC
Q psy17460        129 PFGTR  133 (216)
Q Consensus       129 p~~~~  133 (216)
                      ..|+.
T Consensus       146 slHW~  150 (325)
T KOG2940|consen  146 SLHWT  150 (325)
T ss_pred             hhhhh
Confidence            88876

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.66  E-value=0.002  Score=50.87  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=55.3

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc-ccccCccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS-SVFKQKVD  122 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~~D  122 (216)
                      ...+|.+||-+|+.+|+....++.- + .+.|+++|.++...+.....++...  |+-.+.+|+  ..... ...-+.+|
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~--NIiPIl~DA--r~P~~Y~~lv~~VD  145 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP--NIIPILEDA--RHPEKYRMLVEMVD  145 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST--TEEEEES-T--TSGGGGTTTS--EE
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC--ceeeeeccC--CChHHhhccccccc
Confidence            3457899999999999988877764 5 3799999999988777665555433  899999999  54332 12226899


Q ss_pred             EEEEcCC
Q psy17460        123 TVIMNPP  129 (216)
Q Consensus       123 ~vi~npp  129 (216)
                      +|++|-+
T Consensus       146 vI~~DVa  152 (229)
T PF01269_consen  146 VIFQDVA  152 (229)
T ss_dssp             EEEEE-S
T ss_pred             EEEecCC
Confidence            9999865

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1709|consensus

Probab=97.65  E-value=0.00089  Score=52.41  Aligned_cols=94  Identities=17%  Similarity=0.218  Sum_probs=68.3

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEE
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAI  103 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~  103 (216)
                      +..+.|+  +.+.++..+.     .+|.+||++|-|-|.....+-++.+..=+-+|.+|+.++..+...-...- ||-++
T Consensus        83 Mm~WEtp--iMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~-nViil  154 (271)
T KOG1709|consen   83 MMRWETP--IMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKE-NVIIL  154 (271)
T ss_pred             hhhhhhH--HHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccccc-ceEEE
Confidence            4445544  4444444333     37889999999999999988888776778899999999998887543332 89999


Q ss_pred             EecccccccccccccCcccEEEEc
Q psy17460        104 LFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus       104 ~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .|-.  .+......++.||-|+-|
T Consensus       155 ~g~W--eDvl~~L~d~~FDGI~yD  176 (271)
T KOG1709|consen  155 EGRW--EDVLNTLPDKHFDGIYYD  176 (271)
T ss_pred             ecch--HhhhccccccCcceeEee
Confidence            9988  555444444779999864

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.62  E-value=0.0033  Score=52.77  Aligned_cols=97  Identities=13%  Similarity=0.107  Sum_probs=64.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhH----cC-CCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEeccccccccc---c-cc
Q psy17460         49 DGKTVLDLGCGSGILTFGSIL----LG-ADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDS---S-VF  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~----~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~---~-~~  117 (216)
                      ++..++|+|||+|.-+..++.    .+ ....+++|+|.++++.+..++.....+  .+.-+.||+  .+...   . ..
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy--~~~l~~l~~~~~  153 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTY--DDGLAWLKRPEN  153 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecH--HHHHhhcccccc
Confidence            466899999999997544332    22 257899999999999999998844444  455699999  55321   1 11


Q ss_pred             cCcccEEE-EcCCCCCCCCCCCHHHHHHHhh
Q psy17460        118 KQKVDTVI-MNPPFGTRNCGIDLAFVQYAAD  147 (216)
Q Consensus       118 ~~~~D~vi-~npp~~~~~~~~~~~~~~~~l~  147 (216)
                      .....+++ .-..++++.+.....++.....
T Consensus       154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~  184 (319)
T TIGR03439       154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLA  184 (319)
T ss_pred             cCCccEEEEeCccccCCCHHHHHHHHHHHHH
Confidence            12345554 3446666666666777776654

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG3201|consensus

Probab=97.62  E-value=4.2e-05  Score=57.03  Aligned_cols=141  Identities=16%  Similarity=0.178  Sum_probs=77.9

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCC-CCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCC---C
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCG-SGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEI---T   98 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G-tG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~---~   98 (216)
                      ...||+.+.++    +.++.......|.+|+++|.| ||..++.+|...+ ..|+..|-+++.++..++....+..   +
T Consensus         8 vciwpseeala----~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~t   83 (201)
T KOG3201|consen    8 VCIWPSEEALA----WTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLT   83 (201)
T ss_pred             EEecccHHHHH----HHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccc
Confidence            34567555444    334433233578999999999 4555576666544 8999999999999998887766532   2


Q ss_pred             ceEEEEecccccccccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCc--eEEEeeCcchHHHHHHHHH
Q psy17460         99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKV--VYSLHKTSTRESILKKIQA  170 (216)
Q Consensus        99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~--ly~~~~~~~~~~~~~~~~~  170 (216)
                      .+..+..+.  -.-........||+|+|-...... -+.+-.+-+..-+++.+.  +++-....+.+.+...+..
T Consensus        84 sc~vlrw~~--~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~  156 (201)
T KOG3201|consen   84 SCCVLRWLI--WGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGT  156 (201)
T ss_pred             eehhhHHHH--hhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHh
Confidence            343333333  111112222589999985443222 112222334444555444  3333333344444444433

>KOG2198|consensus

Probab=97.59  E-value=0.00067  Score=57.07  Aligned_cols=98  Identities=14%  Similarity=0.143  Sum_probs=68.1

Q ss_pred             HHHHHHHHH-hhcCCCCCCEEEEecCCCCHhHHHHhHcCC-----CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460         34 AATILHTIQ-NNYNDIDGKTVLDLGCGSGILTFGSILLGA-----DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI  107 (216)
Q Consensus        34 ~~~~~~~~~-~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-----~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~  107 (216)
                      ....++++. ..+...++++|||+++..|.-+..+.+...     +.|++=|.++.-+......++.....++.+...|+
T Consensus       139 rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~  218 (375)
T KOG2198|consen  139 RQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDA  218 (375)
T ss_pred             hhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccc
Confidence            334445553 223557899999999999998876666421     38999999998888887777554444566666666


Q ss_pred             ccccccccc-------ccCcccEEEEcCCCCCC
Q psy17460        108 NEKSLDSSV-------FKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       108 ~~~~~~~~~-------~~~~~D~vi~npp~~~~  133 (216)
                        ..++...       ....||-|+||.|....
T Consensus       219 --~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~D  249 (375)
T KOG2198|consen  219 --SLFPNIYLKDGNDKEQLKFDRVLVDVPCSGD  249 (375)
T ss_pred             --eeccccccccCchhhhhhcceeEEecccCCC
Confidence              4444321       22579999999998764

>KOG1501|consensus

Probab=97.59  E-value=0.00013  Score=62.59  Aligned_cols=56  Identities=27%  Similarity=0.336  Sum_probs=52.2

Q ss_pred             EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecc
Q psy17460         52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEI  107 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~  107 (216)
                      -|||+|+|||.++..++..|+..|+++|.-..|.+.|++...++++. +|+++.--.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS  125 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS  125 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence            69999999999999999999989999999999999999999999987 788887776

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.57  E-value=0.00017  Score=59.88  Aligned_cols=78  Identities=18%  Similarity=0.131  Sum_probs=56.1

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--cc--ccCcc
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--SV--FKQKV  121 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~--~~~~~  121 (216)
                      ..++...+|...|.|..+..+++.. .++++|+|.|+++++.+++++....- ++.++.+++  .++..  ..  ....+
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~-r~~~~~~~F--~~l~~~l~~~~~~~~~   94 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDD-RFIFIHGNF--SNLDEYLKELNGINKV   94 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCT-TEEEEES-G--GGHHHHHHHTTTTS-E
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccc-eEEEEeccH--HHHHHHHHHccCCCcc
Confidence            3477899999999999999988763 38999999999999999999876533 899999999  55432  21  12489


Q ss_pred             cEEEEc
Q psy17460        122 DTVIMN  127 (216)
Q Consensus       122 D~vi~n  127 (216)
                      |.|++|
T Consensus        95 dgiL~D  100 (310)
T PF01795_consen   95 DGILFD  100 (310)
T ss_dssp             EEEEEE
T ss_pred             CEEEEc
Confidence            999976

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.53  E-value=0.00057  Score=54.80  Aligned_cols=71  Identities=18%  Similarity=0.288  Sum_probs=56.1

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ..+|+|+|||.--+++......+ ..++|+|||..+++.....+...+. +.++...|.  ..-+..   ...|+.+.
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl--~~~~~~---~~~DlaLl  177 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDL--LSDPPK---EPADLALL  177 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-T--TTSHTT---SEESEEEE
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeee--eccCCC---CCcchhhH
Confidence            67999999999999988665543 6999999999999999999988887 788888899  776544   67899886

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.51  E-value=0.00068  Score=58.16  Aligned_cols=93  Identities=19%  Similarity=0.214  Sum_probs=68.1

Q ss_pred             CCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCCc--eEEEEecccccccccccccCcccEEE
Q psy17460         50 GKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEITN--CDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      +-+|||.-+|+|.-++-.+..  +..+|+.-|+|+++++.++.|++.|+++.  +++...|+  ..+.. ...+.||+|=
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DA--n~ll~-~~~~~fD~ID  126 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDA--NVLLY-SRQERFDVID  126 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-H--HHHHC-HSTT-EEEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhH--HHHhh-hccccCCEEE
Confidence            458999999999999876665  34799999999999999999999999874  89999999  65542 2237899998


Q ss_pred             EcCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        126 MNPPFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       126 ~npp~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      .|| |+..     ..|++.++...+.
T Consensus       127 lDP-fGSp-----~pfldsA~~~v~~  146 (377)
T PF02005_consen  127 LDP-FGSP-----APFLDSALQAVKD  146 (377)
T ss_dssp             E---SS-------HHHHHHHHHHEEE
T ss_pred             eCC-CCCc-----cHhHHHHHHHhhc
Confidence            876 6543     4588888888766

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=97.45  E-value=0.00027  Score=58.99  Aligned_cols=73  Identities=27%  Similarity=0.384  Sum_probs=55.6

Q ss_pred             EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460         52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      +++|++||-|.+..-+.+.|..-++++|+++.+.+.-+.|..       ....+|+  .++......+.+|+++..||..
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di--~~~~~~~l~~~~D~l~ggpPCQ   72 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDI--TEIDPSDLPKDVDLLIGGPPCQ   72 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHG--GGCHHHHHHHT-SEEEEE---T
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccc--cccccccccccceEEEeccCCc
Confidence            689999999999999999887789999999999988888875       7889999  6655332112599999999987


Q ss_pred             CC
Q psy17460        132 TR  133 (216)
Q Consensus       132 ~~  133 (216)
                      ..
T Consensus        73 ~f   74 (335)
T PF00145_consen   73 GF   74 (335)
T ss_dssp             TT
T ss_pred             eE
Confidence            75

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.44  E-value=7.7e-05  Score=52.09  Aligned_cols=73  Identities=11%  Similarity=0.038  Sum_probs=25.8

Q ss_pred             EEecCCCCHhHHHHhHcC---C-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460         54 LDLGCGSGILTFGSILLG---A-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        54 lD~g~GtG~~~~~~~~~~---~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ||+|+..|..+..+++.-   . .+++++|..+. .+.++..+++.+.. +++++.++.  .+.......+++|+++.|.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s--~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDS--PDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-T--HHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCc--HHHHHHcCCCCEEEEEECC
Confidence            689999999887766541   1 37999999995 33333333333333 799999999  6654333237999999987


Q ss_pred             C
Q psy17460        129 P  129 (216)
Q Consensus       129 p  129 (216)
                      +
T Consensus        78 ~   78 (106)
T PF13578_consen   78 D   78 (106)
T ss_dssp             -
T ss_pred             C
Confidence            5

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.41  E-value=0.001  Score=56.08  Aligned_cols=93  Identities=17%  Similarity=0.212  Sum_probs=73.7

Q ss_pred             CCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         50 GKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ..+|+|..+|||.-++-.+.. +..+|+.-|+||++++.++.|+..|...+...+..|+  ..+....+ ..||+|=.||
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DA--N~lm~~~~-~~fd~IDiDP  129 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDA--NALLHELH-RAFDVIDIDP  129 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchH--HHHHHhcC-CCccEEecCC
Confidence            789999999999999887765 4458999999999999999999998444677777999  77665533 6899997765


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                       |+..     ..|++.++...++
T Consensus       130 -FGSP-----aPFlDaA~~s~~~  146 (380)
T COG1867         130 -FGSP-----APFLDAALRSVRR  146 (380)
T ss_pred             -CCCC-----chHHHHHHHHhhc
Confidence             6654     2378878777664

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.25  E-value=0.0019  Score=53.12  Aligned_cols=83  Identities=13%  Similarity=0.099  Sum_probs=65.1

Q ss_pred             HhhcCCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc---c
Q psy17460         42 QNNYNDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS---V  116 (216)
Q Consensus        42 ~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~  116 (216)
                      ...+...++...+|..-|.|..+..++...+  ++++|+|.|+.+++.|+..+..++- ++.++.+++  .++...   .
T Consensus        16 i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~-r~~~v~~~F--~~l~~~l~~~   92 (314)
T COG0275          16 VELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG-RVTLVHGNF--ANLAEALKEL   92 (314)
T ss_pred             HHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCC-cEEEEeCcH--HHHHHHHHhc
Confidence            3333445778999999999999999888754  6799999999999999999987663 899999999  554322   1


Q ss_pred             ccCcccEEEEc
Q psy17460        117 FKQKVDTVIMN  127 (216)
Q Consensus       117 ~~~~~D~vi~n  127 (216)
                      ...++|-|+.|
T Consensus        93 ~i~~vDGiL~D  103 (314)
T COG0275          93 GIGKVDGILLD  103 (314)
T ss_pred             CCCceeEEEEe
Confidence            22578888865

>KOG4589|consensus

Probab=97.14  E-value=0.0053  Score=47.15  Aligned_cols=70  Identities=14%  Similarity=0.122  Sum_probs=49.5

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEe-cccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILF-EINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~------~~~  118 (216)
                      .++.+|||+||..|+.+..+.+. ++ +.|.|||+-+           ......++++.+ |+  .+....      ...
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~Ga~~i~~~dv--tdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEGATIIQGNDV--TDPETYRKIFEALPN  134 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCCccccccccc--CCHHHHHHHHHhCCC
Confidence            57889999999999999887776 35 8999999854           222335677777 77  432211      122


Q ss_pred             CcccEEEEcCCC
Q psy17460        119 QKVDTVIMNPPF  130 (216)
Q Consensus       119 ~~~D~vi~npp~  130 (216)
                      -++|+|++|..-
T Consensus       135 r~VdvVlSDMap  146 (232)
T KOG4589|consen  135 RPVDVVLSDMAP  146 (232)
T ss_pred             CcccEEEeccCC
Confidence            579999998654

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.08  E-value=0.002  Score=54.42  Aligned_cols=77  Identities=32%  Similarity=0.410  Sum_probs=61.6

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccC-cccEEEEcC
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQ-KVDTVIMNP  128 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-~~D~vi~np  128 (216)
                      ..+++|++||-|.+..-+...|..-+.++|+++.+++.-+.|...     ..++.+|+  .++....... .+|+++..|
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di--~~~~~~~~~~~~~DvligGp   75 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDI--KELDGEALRKSDVDVLIGGP   75 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechH--hhcChhhccccCCCEEEeCC
Confidence            358999999999999888888877889999999999988888763     46777888  5554432213 799999999


Q ss_pred             CCCCC
Q psy17460        129 PFGTR  133 (216)
Q Consensus       129 p~~~~  133 (216)
                      |...+
T Consensus        76 PCQ~F   80 (328)
T COG0270          76 PCQDF   80 (328)
T ss_pred             CCcch
Confidence            99875

>PRK10458 DNA cytosine methylase; Provisional

Probab=97.07  E-value=0.0041  Score=54.84  Aligned_cols=80  Identities=18%  Similarity=0.152  Sum_probs=57.9

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--------------
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--------------  115 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--------------  115 (216)
                      .-+++|++||.|.+..-+-..|..-|.++|+++.+.+.-+.|.....  +...+.+|+  .++...              
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p--~~~~~~~DI--~~i~~~~~~~~~~~~~~~~~  163 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP--ATHRFNEDI--RDITLSHKEGVSDEEAAEHI  163 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC--ccceeccCh--hhCccccccccchhhhhhhh
Confidence            34899999999999988877777678899999998888777753211  344556777  444311              


Q ss_pred             -cccCcccEEEEcCCCCCC
Q psy17460        116 -VFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       116 -~~~~~~D~vi~npp~~~~  133 (216)
                       .....+|+++..||....
T Consensus       164 ~~~~p~~DvL~gGpPCQ~F  182 (467)
T PRK10458        164 RQHIPDHDVLLAGFPCQPF  182 (467)
T ss_pred             hccCCCCCEEEEcCCCCcc
Confidence             011368999999998875

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.03  E-value=0.023  Score=44.29  Aligned_cols=93  Identities=19%  Similarity=0.211  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHhhc---CCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460         33 LAATILHTIQNNY---NDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN  108 (216)
Q Consensus        33 ~~~~~~~~~~~~~---~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  108 (216)
                      .+..+...++.-+   +..+|.+||=+|+.+|+....++.- +.+.++|||.++.........+....  |+-.+.+|+ 
T Consensus        57 ~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~--Ni~PIL~DA-  133 (231)
T COG1889          57 RRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP--NIIPILEDA-  133 (231)
T ss_pred             chhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC--Cceeeeccc-
Confidence            3344444444322   4467899999999999988877764 45789999999998887777666533  899999999 


Q ss_pred             ccccccc-cccCcccEEEEcCC
Q psy17460        109 EKSLDSS-VFKQKVDTVIMNPP  129 (216)
Q Consensus       109 ~~~~~~~-~~~~~~D~vi~npp  129 (216)
                       ...... ..-+.+|+|+.|-.
T Consensus       134 -~~P~~Y~~~Ve~VDviy~DVA  154 (231)
T COG1889         134 -RKPEKYRHLVEKVDVIYQDVA  154 (231)
T ss_pred             -CCcHHhhhhcccccEEEEecC
Confidence             543221 12267999998753

>KOG3987|consensus

Probab=97.01  E-value=0.00015  Score=56.37  Aligned_cols=97  Identities=21%  Similarity=0.197  Sum_probs=61.4

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCC
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      +.++||+|+|.|-++..++-.. .+|++.|+|..|+...++.    +. |  +  ...  .++...+  -++|+|.|=  
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk----~y-n--V--l~~--~ew~~t~--~k~dli~cl--  176 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK----NY-N--V--LTE--IEWLQTD--VKLDLILCL--  176 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhc----CC-c--e--eee--hhhhhcC--ceeehHHHH--
Confidence            4799999999999998777663 5799999999887765543    21 1  1  111  2222111  368888761  


Q ss_pred             CCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460        130 FGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                                ..++++..+.+             +++.....+.|++|++++....
T Consensus       177 ----------NlLDRc~~p~k-------------LL~Di~~vl~psngrvivaLVL  209 (288)
T KOG3987|consen  177 ----------NLLDRCFDPFK-------------LLEDIHLVLAPSNGRVIVALVL  209 (288)
T ss_pred             ----------HHHHhhcChHH-------------HHHHHHHHhccCCCcEEEEEEe
Confidence                      23444444433             6677777777777777764443

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.98  E-value=0.023  Score=40.73  Aligned_cols=74  Identities=23%  Similarity=0.306  Sum_probs=48.2

Q ss_pred             EEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc--cccccccCcccEEEEcC
Q psy17460         53 VLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS--LDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        53 vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~D~vi~np  128 (216)
                      ++|+|||+|... .+.....  ..++|+|+++.++..++..........+.+..+|.  ..  .+.... ..||++.+..
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~d~~~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADA--LGGVLPFEDS-ASFDLVISLL  127 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecc--ccCCCCCCCC-CceeEEeeee
Confidence            999999999976 3333322  37899999999998855554331210168888888  54  443311 3799994444


Q ss_pred             CC
Q psy17460        129 PF  130 (216)
Q Consensus       129 p~  130 (216)
                      ..
T Consensus       128 ~~  129 (257)
T COG0500         128 VL  129 (257)
T ss_pred             eh
Confidence            43

>KOG2912|consensus

Probab=96.98  E-value=0.00088  Score=55.31  Aligned_cols=80  Identities=18%  Similarity=0.198  Sum_probs=53.2

Q ss_pred             EEecCCCCHhH-HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccc---ccccCcccEEEEcC
Q psy17460         54 LDLGCGSGILT-FGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDS---SVFKQKVDTVIMNP  128 (216)
Q Consensus        54 lD~g~GtG~~~-~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~---~~~~~~~D~vi~np  128 (216)
                      +|+|+|+-++- +.-+.+.....+++|+++...+.|+.|+.++++. .+.++.-...+.-+..   ..+...||.+.|||
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNP  186 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNP  186 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCC
Confidence            67777766543 2222333478899999999999999999998876 4666655441111111   11124599999999


Q ss_pred             CCCCC
Q psy17460        129 PFGTR  133 (216)
Q Consensus       129 p~~~~  133 (216)
                      ||...
T Consensus       187 PFfe~  191 (419)
T KOG2912|consen  187 PFFEN  191 (419)
T ss_pred             chhhc
Confidence            99864

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=96.97  E-value=0.0016  Score=54.65  Aligned_cols=72  Identities=22%  Similarity=0.223  Sum_probs=56.3

Q ss_pred             EEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCC
Q psy17460         53 VLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGT  132 (216)
Q Consensus        53 vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~  132 (216)
                      |+|++||.|.++.-+.+.|..-+.++|+++.+++..+.|...      .++.+|+  .++..... ..+|+++..||...
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di--~~~~~~~~-~~~dvl~gg~PCq~   71 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------KVPFGDI--TKISPSDI-PDFDILLGGFPCQP   71 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------CCCccCh--hhhhhhhC-CCcCEEEecCCCcc
Confidence            689999999999888888876678999999999988888642      4566888  55443211 46899999999876


Q ss_pred             C
Q psy17460        133 R  133 (216)
Q Consensus       133 ~  133 (216)
                      .
T Consensus        72 f   72 (315)
T TIGR00675        72 F   72 (315)
T ss_pred             c
Confidence            5

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1227|consensus

Probab=96.94  E-value=0.00044  Score=56.58  Aligned_cols=73  Identities=22%  Similarity=0.308  Sum_probs=60.3

Q ss_pred             CCCEEEEecCCCCHhHH-HHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTF-GSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~-~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .+..|.|+.+|.|.+++ .+...|+..|+++|.+|..++..+++++.|++. .+.++.||.  ...-+.   ...|.|..
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~--R~~~~~---~~AdrVnL  268 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDN--RNPKPR---LRADRVNL  268 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccc--cccCcc---ccchheee
Confidence            46899999999999998 566778899999999999999999999998765 577888888  554433   56777764

>KOG1269|consensus

Probab=96.94  E-value=0.0028  Score=54.04  Aligned_cols=75  Identities=15%  Similarity=0.135  Sum_probs=61.0

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++..++|+|||.|.....++..+.+.++|++.++..+..+........++ +..++.+|+  ..-++.+  +.||.+-+
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~--~~~~fed--n~fd~v~~  184 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF--GKMPFED--NTFDGVRF  184 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh--hcCCCCc--cccCcEEE
Confidence            466789999999999999988876679999999998888777766555554 456699999  8887766  78999865

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.80  E-value=0.0022  Score=56.09  Aligned_cols=110  Identities=15%  Similarity=0.099  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEE---eCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFAL---ECDKEILDIFIDNKNEFEITNCDAILFEIN  108 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~i---D~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  108 (216)
                      ++.+.+...+........-..+||+|||+|+++..+..++- .++.+   |..+.+++.|.++    |+   -.+.+-+.
T Consensus       100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR----Gv---pa~~~~~~  171 (506)
T PF03141_consen  100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER----GV---PAMIGVLG  171 (506)
T ss_pred             HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc----Cc---chhhhhhc
Confidence            45555555554321112235899999999999999999853 22222   4444455554433    22   23323321


Q ss_pred             ccccccccccCcccEEEEcCCCCCC--CCCCCHHHHHHHhhcCCc
Q psy17460        109 EKSLDSSVFKQKVDTVIMNPPFGTR--NCGIDLAFVQYAADISKV  151 (216)
Q Consensus       109 ~~~~~~~~~~~~~D~vi~npp~~~~--~~~~~~~~~~~~l~~~~~  151 (216)
                      ...+|+..  +.||+|-|.-.....  +.+..+--++++|++++.
T Consensus       172 s~rLPfp~--~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGy  214 (506)
T PF03141_consen  172 SQRLPFPS--NAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGY  214 (506)
T ss_pred             cccccCCc--cchhhhhcccccccchhcccceeehhhhhhccCce
Confidence            14555544  799999876544433  223333345677777775

; GO: 0008168 methyltransferase activity

>KOG3178|consensus

Probab=96.77  E-value=0.031  Score=46.93  Aligned_cols=98  Identities=12%  Similarity=0.008  Sum_probs=70.2

Q ss_pred             CEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCC
Q psy17460         51 KTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      ...+|+|.|.|..+-.+....+ +|-+++.+...+-.+..++. .   .|+.+.||.  +.-.     .+-|+|++.=-.
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~---gV~~v~gdm--fq~~-----P~~daI~mkWiL  246 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-P---GVEHVAGDM--FQDT-----PKGDAIWMKWIL  246 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-C---Ccceecccc--cccC-----CCcCeEEEEeec
Confidence            6899999999999988777544 79999999988887777764 3   478888998  6553     355799884444


Q ss_pred             CCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        131 GTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      |+.                       +..+...+++.+++-|.| +|.+++...
T Consensus       247 hdw-----------------------tDedcvkiLknC~~sL~~-~GkIiv~E~  276 (342)
T KOG3178|consen  247 HDW-----------------------TDEDCVKILKNCKKSLPP-GGKIIVVEN  276 (342)
T ss_pred             ccC-----------------------ChHHHHHHHHHHHHhCCC-CCEEEEEec
Confidence            433                       222345566667777777 777776444

>KOG2078|consensus

Probab=96.76  E-value=0.001  Score=56.90  Aligned_cols=62  Identities=16%  Similarity=0.187  Sum_probs=56.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLD  113 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~  113 (216)
                      +|..|-|++||.|-+++.+++.+ +.|++-|+++++++..+.|+..+.+.  +++++..|+  .++.
T Consensus       249 ~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda--~~Fl  312 (495)
T KOG2078|consen  249 PGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA--KDFL  312 (495)
T ss_pred             CcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccH--HHHh
Confidence            78999999999999999999998 59999999999999999999999876  599999998  5544

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.68  E-value=0.0037  Score=45.92  Aligned_cols=56  Identities=20%  Similarity=0.236  Sum_probs=39.6

Q ss_pred             EEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460         74 FCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus        74 ~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      +|+|+||.+.+++..+.++...++. +++++..+=  .++......+++|+++.|.=|-
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH--e~l~~~i~~~~v~~~iFNLGYL   57 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH--ENLDEYIPEGPVDAAIFNLGYL   57 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G--GGGGGT--S--EEEEEEEESB-
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH--HHHHhhCccCCcCEEEEECCcC
Confidence            6899999999999999999998876 699999888  4433222114899999997664

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG4058|consensus

Probab=96.57  E-value=0.008  Score=44.40  Aligned_cols=65  Identities=12%  Similarity=0.079  Sum_probs=52.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDS  114 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~  114 (216)
                      .+..+.+|+|+|.|.+.+.+++.|.-..+|+|+++=.+...+-..-..++. ...|..-|.  .....
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl--wK~dl  136 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL--WKVDL  136 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh--hhccc
Confidence            343479999999999999999998667899999999999988887777765 577777777  55443

>KOG0822|consensus

Probab=96.56  E-value=0.0046  Score=54.41  Aligned_cols=132  Identities=16%  Similarity=0.217  Sum_probs=87.0

Q ss_pred             HHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhH---c-C-CCEEEEEeCChHH
Q psy17460         10 LQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSIL---L-G-ADFCFALECDKEI   84 (216)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~---~-~-~~~v~~iD~~~~~   84 (216)
                      .++++..|+.+.+++.+|.  ..+.+.+++.+...-. ....+|+-+|+|-|-+.....+   . . .-+++++|-+|++
T Consensus       331 e~~TYetFEkD~VKY~~Yq--~Ai~~AL~Drvpd~~a-~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNA  407 (649)
T KOG0822|consen  331 ENQTYETFEKDPVKYDQYQ--QAILKALLDRVPDESA-KTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNA  407 (649)
T ss_pred             hhhhhhhhhccchHHHHHH--HHHHHHHHhhCccccc-CceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcch
Confidence            3455677888888888887  5566666666554311 1256899999999998755333   2 2 2689999999999


Q ss_pred             HHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC--CCCCCCCCCCHHHHHHHhhcCCc
Q psy17460         85 LDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP--PFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus        85 ~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np--p~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      +-..+. .+..+.. +|+++.+|-  ..+....  ++.|++++-.  .|+  +.+...+.+.-+...++.
T Consensus       408 ivtL~~-~n~~~W~~~Vtii~~DM--R~w~ap~--eq~DI~VSELLGSFG--DNELSPECLDG~q~fLkp  470 (649)
T KOG0822|consen  408 IVTLQN-RNFECWDNRVTIISSDM--RKWNAPR--EQADIIVSELLGSFG--DNELSPECLDGAQKFLKP  470 (649)
T ss_pred             hhhhhh-hchhhhcCeeEEEeccc--cccCCch--hhccchHHHhhcccc--CccCCHHHHHHHHhhcCC
Confidence            877666 2222232 799999999  7776432  7899998642  333  444444555555555544

>KOG2798|consensus

Probab=96.42  E-value=0.039  Score=45.75  Aligned_cols=52  Identities=19%  Similarity=0.221  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHH
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEIL   85 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~   85 (216)
                      +.+.+-+++..........+||-+|||.|.++..++..|. ++-|=|.|.-|+
T Consensus       134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Ml  185 (369)
T KOG2798|consen  134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFML  185 (369)
T ss_pred             HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHH
Confidence            4444444444433334456899999999999999999987 566667776654

>PRK11524 putative methyltransferase; Provisional

Probab=96.37  E-value=0.0074  Score=49.85  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=24.7

Q ss_pred             ceEEEEecccccccccccccCcccEEEEcCCCCC
Q psy17460         99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGT  132 (216)
Q Consensus        99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~  132 (216)
                      +..++++|+  .+.......++||+||+||||..
T Consensus         8 ~~~i~~gD~--~~~l~~l~~~siDlIitDPPY~~   39 (284)
T PRK11524          8 AKTIIHGDA--LTELKKIPSESVDLIFADPPYNI   39 (284)
T ss_pred             CCEEEeccH--HHHHHhcccCcccEEEECCCccc
Confidence            467999999  77543333479999999999974

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.29  E-value=0.0081  Score=41.86  Aligned_cols=48  Identities=23%  Similarity=0.443  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCC
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD   81 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~   81 (216)
                      +++.++.+-.......+....+|+|||.|.+..-+.+.|- .-+|+|+-
T Consensus        42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R   89 (112)
T PF07757_consen   42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR   89 (112)
T ss_pred             HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence            4455555544443333455799999999999988888876 67899974

; GO: 0008168 methyltransferase activity

>KOG0821|consensus

Probab=96.24  E-value=0.015  Score=45.88  Aligned_cols=104  Identities=13%  Similarity=0.075  Sum_probs=72.3

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEE
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAI  103 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~  103 (216)
                      ..+|-....+...++....    ......|.++|.|.|.++..+...+..++..+|+|...+.-.+...+.... +..+.
T Consensus        29 SQNfLMD~~lT~KIvK~A~----~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~-~~~IH  103 (326)
T KOG0821|consen   29 SQNFLMDLRLTDKIVKKAG----NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPG-KLRIH  103 (326)
T ss_pred             hHhHHhhhHHHHHHHHhcc----ccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCc-ceEEe
Confidence            3345555566666655554    347789999999999999999999888999999999888877766654443 67888


Q ss_pred             Eecccccccc----------cccccCcccEEEEcCCCCCC
Q psy17460        104 LFEINEKSLD----------SSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       104 ~~d~~~~~~~----------~~~~~~~~D~vi~npp~~~~  133 (216)
                      .+|+...+..          +.+. .+--.||.|.||...
T Consensus       104 h~D~LR~~I~~~~~~~~~Rpw~d~-~p~~H~IGNLPf~i~  142 (326)
T KOG0821|consen  104 HGDVLRFKIEKAFSESLKRPWEDD-PPNVHIIGNLPFSVS  142 (326)
T ss_pred             ccccceehHHhhcchhhcCCcccC-CCceEEeccCCcccc
Confidence            8888333221          1110 123467899998543

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.22  E-value=0.045  Score=42.91  Aligned_cols=61  Identities=8%  Similarity=-0.002  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-----CCCEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-----GADFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKS  111 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-----~~~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~  111 (216)
                      +++.|+|+|.-.|..++..|..     +.++|+|+|++....+.....  ...+ ++|++++||..+.+
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e--~hp~~~rI~~i~Gds~d~~   98 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE--SHPMSPRITFIQGDSIDPE   98 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG--G----TTEEEEES-SSSTH
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh--hccccCceEEEECCCCCHH
Confidence            6779999999999988766542     237999999975443222111  1111 27999999994333

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG2793|consensus

Probab=96.21  E-value=0.17  Score=40.93  Aligned_cols=43  Identities=21%  Similarity=0.287  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhh
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNK   92 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~   92 (216)
                      ++..||++|+|+|..++.++.....++...|+ +..+...+.|.
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~  128 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNR  128 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhh
Confidence            35579999999999898888865568998888 44555444443

>KOG2352|consensus

Probab=96.07  E-value=0.11  Score=45.53  Aligned_cols=77  Identities=16%  Similarity=0.193  Sum_probs=63.2

Q ss_pred             EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460         52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      +++-+|||.-.+...+...|...|+.+|+|+-.++.+...-. ....-..+...|.  ....+.+  ++||+|+--+.+.
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~--~~l~fed--ESFdiVIdkGtlD  125 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDM--DQLVFED--ESFDIVIDKGTLD  125 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecc--hhccCCC--cceeEEEecCccc
Confidence            899999999999999999888889999999999888776543 2222588999999  7776665  8999999877776


Q ss_pred             CC
Q psy17460        132 TR  133 (216)
Q Consensus       132 ~~  133 (216)
                      ..
T Consensus       126 al  127 (482)
T KOG2352|consen  126 AL  127 (482)
T ss_pred             cc
Confidence            65

>KOG1331|consensus

Probab=95.99  E-value=0.0057  Score=49.88  Aligned_cols=93  Identities=14%  Similarity=0.066  Sum_probs=66.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCce-EEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNC-DAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .+..++|.|||.|-...   ......++|.|++...+..+++.       +. ....+|+  ++.+...  ++||.+++-
T Consensus        45 ~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~--l~~p~~~--~s~d~~lsi  110 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADA--LKLPFRE--ESFDAALSI  110 (293)
T ss_pred             CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC-------CCceeehhhh--hcCCCCC--Cccccchhh
Confidence            48899999999998653   12236799999998887776554       34 6889999  9998876  899999987


Q ss_pred             CCCCCC----CCCCCHHHHHHHhhcCCc--eEEE
Q psy17460        128 PPFGTR----NCGIDLAFVQYAADISKV--VYSL  155 (216)
Q Consensus       128 pp~~~~----~~~~~~~~~~~~l~~~~~--ly~~  155 (216)
                      .--|++    ++....+.+-++++++++  +|..
T Consensus       111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen  111 AVIHHLSTRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            777765    333334455566666666  4444

>KOG3115|consensus

Probab=95.77  E-value=0.079  Score=41.38  Aligned_cols=63  Identities=14%  Similarity=0.186  Sum_probs=50.6

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhC-------CCceEEEEeccccccccc
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFE-------ITNCDAILFEINEKSLDS  114 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~-------~~~v~~~~~d~~~~~~~~  114 (216)
                      .--+.|+|||-|.+.+.++-..+ .-++|.||-...-+..+..+...+       ..|+.+...++  ..+..
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~na--mk~lp  131 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNA--MKFLP  131 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccc--hhhcc
Confidence            34699999999999999998877 788999998888888888777665       44677777777  66543

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=95.71  E-value=0.05  Score=44.88  Aligned_cols=48  Identities=25%  Similarity=0.295  Sum_probs=43.0

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE   96 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~   96 (216)
                      ..+..|||+.+|+|..+..+...+. .++|+|++++.++.+...+....
T Consensus       221 ~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~~  268 (302)
T COG0863         221 FPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEGL  268 (302)
T ss_pred             CCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhhc
Confidence            4789999999999999998888876 89999999999999999887643

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=95.52  E-value=0.0085  Score=48.75  Aligned_cols=57  Identities=12%  Similarity=0.053  Sum_probs=36.8

Q ss_pred             CEEEEecCCCCHh--HHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460         51 KTVLDLGCGSGIL--TFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI  107 (216)
Q Consensus        51 ~~vlD~g~GtG~~--~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~  107 (216)
                      ...||+|||.-+.  .-++++. .+ ++|+-+|.+|-.+..++..+..+.-....++.+|+
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~  130 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADL  130 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--T
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCC
Confidence            4899999996553  4556554 23 79999999999999888887765422389999999

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1201|consensus

Probab=95.47  E-value=0.087  Score=43.47  Aligned_cols=81  Identities=19%  Similarity=0.209  Sum_probs=61.7

Q ss_pred             CCCCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------c
Q psy17460         46 NDIDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------V  116 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~  116 (216)
                      +...|+.||=.|.|+|.   ++.+++++|+ +++..|+++...+...+.++..|  ++..+.+|+.+.+-...      .
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~  110 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKK  110 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHH
Confidence            34578999999999987   5677888887 89999999998888777777666  78999999944432221      1


Q ss_pred             ccCcccEEEEcCC
Q psy17460        117 FKQKVDTVIMNPP  129 (216)
Q Consensus       117 ~~~~~D~vi~npp  129 (216)
                      .-+.+|+++.|.-
T Consensus       111 e~G~V~ILVNNAG  123 (300)
T KOG1201|consen  111 EVGDVDILVNNAG  123 (300)
T ss_pred             hcCCceEEEeccc
Confidence            2267999998853

>KOG1562|consensus

Probab=95.43  E-value=0.06  Score=44.36  Aligned_cols=81  Identities=14%  Similarity=0.125  Sum_probs=65.2

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCC----CceEEEEecccccccccccccCcc
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEI----TNCDAILFEINEKSLDSSVFKQKV  121 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~~  121 (216)
                      ....++||-+|-|.|....+.+++.. .++.-+|++.+.++..++.+....+    +++.+..||-  ..+....+.++|
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG--~~fl~~~~~~~~  196 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG--FLFLEDLKENPF  196 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH--HHHHHHhccCCc
Confidence            34678999999999999988888754 7899999999999999988765432    2799999998  776644445899


Q ss_pred             cEEEEcCC
Q psy17460        122 DTVIMNPP  129 (216)
Q Consensus       122 D~vi~npp  129 (216)
                      |+|+.+..
T Consensus       197 dVii~dss  204 (337)
T KOG1562|consen  197 DVIITDSS  204 (337)
T ss_pred             eEEEEecC
Confidence            99997643

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.32  E-value=0.13  Score=41.89  Aligned_cols=114  Identities=14%  Similarity=0.091  Sum_probs=63.1

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh----------------C-----------C-C
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF----------------E-----------I-T   98 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~----------------~-----------~-~   98 (216)
                      ..+|.++||+|||.-......+.....+++..|..+.-++..++=++..                |           + .
T Consensus        54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            4567899999999977665555554679999999887776554433221                1           0 0


Q ss_pred             ce-EEEEecccccccccccc----cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcC
Q psy17460         99 NC-DAILFEINEKSLDSSVF----KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKN  173 (216)
Q Consensus        99 ~v-~~~~~d~~~~~~~~~~~----~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~  173 (216)
                      .| .++.+|+  ...+.-..    ..+||+|++...            ++.+..-.         ......++...+.|+
T Consensus       134 ~Vk~Vv~cDV--~~~~pl~~~~~~p~~~D~v~s~fc------------LE~a~~d~---------~~y~~al~ni~~lLk  190 (256)
T PF01234_consen  134 AVKQVVPCDV--TQPNPLDPPVVLPPKFDCVISSFC------------LESACKDL---------DEYRRALRNISSLLK  190 (256)
T ss_dssp             HEEEEEE--T--TSSSTTTTS-SS-SSEEEEEEESS------------HHHH-SSH---------HHHHHHHHHHHTTEE
T ss_pred             hhceEEEeec--cCCCCCCccccCccchhhhhhhHH------------HHHHcCCH---------HHHHHHHHHHHHHcC
Confidence            24 4788999  55332211    135999988432            12121111         122334455677889


Q ss_pred             ccceeeeeeee
Q psy17460        174 VEQVDVIAEMK  184 (216)
Q Consensus       174 ~~~g~~~~~~~  184 (216)
                      | +|.+++-..
T Consensus       191 p-GG~Lil~~~  200 (256)
T PF01234_consen  191 P-GGHLILAGV  200 (256)
T ss_dssp             E-EEEEEEEEE
T ss_pred             C-CcEEEEEEE
Confidence            9 999888444

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG2360|consensus

Probab=95.28  E-value=0.047  Score=46.45  Aligned_cols=86  Identities=12%  Similarity=0.093  Sum_probs=68.4

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...+|..|+|.+|-.|.-+..++.. . ..+++|+|.+.+..+..++.+...|+..++...+|+  ...+....-..+..
T Consensus       210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df--~~t~~~~~~~~v~~  287 (413)
T KOG2360|consen  210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDF--LNTATPEKFRDVTY  287 (413)
T ss_pred             CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccc--cCCCCcccccceeE
Confidence            3457789999999999988776653 2 378999999999999999999999987788889999  66332222256788


Q ss_pred             EEEcCCCCCC
Q psy17460        124 VIMNPPFGTR  133 (216)
Q Consensus       124 vi~npp~~~~  133 (216)
                      ++++|+..-.
T Consensus       288 iL~DpscSgS  297 (413)
T KOG2360|consen  288 ILVDPSCSGS  297 (413)
T ss_pred             EEeCCCCCCC
Confidence            9999998763

>PRK13699 putative methylase; Provisional

Probab=95.22  E-value=0.022  Score=45.48  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=25.0

Q ss_pred             eEEEEecccccccccccccCcccEEEEcCCCCC
Q psy17460        100 CDAILFEINEKSLDSSVFKQKVDTVIMNPPFGT  132 (216)
Q Consensus       100 v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~  132 (216)
                      ++++.||+  .+.....+++++|+||.+|||..
T Consensus         2 ~~l~~gD~--le~l~~lpd~SVDLIiTDPPY~i   32 (227)
T PRK13699          2 SRFILGNC--IDVMARFPDNAVDFILTDPPYLV   32 (227)
T ss_pred             CeEEechH--HHHHHhCCccccceEEeCCCccc
Confidence            36889999  87655555589999999999973

>KOG1253|consensus

Probab=95.16  E-value=0.017  Score=50.48  Aligned_cols=96  Identities=13%  Similarity=0.145  Sum_probs=74.0

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc--cccCccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS--VFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~--~~~~~~D  122 (216)
                      .++-+|||.-|+||.-++..++.  +..+|++-|.+++.+...+.|++.++.. .++....|+  ......  .....||
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA--~~lM~~~~~~~~~FD  185 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDA--NVLMYEHPMVAKFFD  185 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchH--HHHHHhccccccccc
Confidence            35679999999999999887765  2378999999999999999999999876 478888998  544332  2236899


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        123 TVIMNPPFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       123 ~vi~npp~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      +|=.|| |+.     ...|++.|+...+.
T Consensus       186 vIDLDP-yGs-----~s~FLDsAvqav~~  208 (525)
T KOG1253|consen  186 VIDLDP-YGS-----PSPFLDSAVQAVRD  208 (525)
T ss_pred             eEecCC-CCC-----ccHHHHHHHHHhhc
Confidence            998876 654     34588887766544

>KOG2920|consensus

Probab=95.14  E-value=0.018  Score=47.03  Aligned_cols=39  Identities=31%  Similarity=0.530  Sum_probs=35.3

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHH
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILD   86 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~   86 (216)
                      ..+++|||+|||+|..++.+...+...++..|.+.+.++
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            578999999999999999999998789999999987774

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=95.08  E-value=0.34  Score=41.79  Aligned_cols=126  Identities=11%  Similarity=0.075  Sum_probs=77.1

Q ss_pred             CEEEEecCCC-CHhHH-HHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         51 KTVLDLGCGS-GILTF-GSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        51 ~~vlD~g~Gt-G~~~~-~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++||-+|||. |.... .+++.+...|+..|.+.+..+.+......    +++...-|+.+.+-..... ..+|+||...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d~~al~~li-~~~d~VIn~~   76 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAADVDALVALI-KDFDLVINAA   76 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccChHHHHHHH-hcCCEEEEeC
Confidence            4689999963 33322 24556657999999998887776665433    6889999993332221111 4669999776


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcch-HHHHHHHHHhcCccceeeeeeeecCCCcc
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTR-ESILKKIQAFKNVEQVDVIAEMKYDLNQS  190 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~-~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  190 (216)
                      |+...     ...++.|++.+-....+...... ..+-..+.+-    +...+.+.|+.++-.
T Consensus        77 p~~~~-----~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~A----git~v~~~G~dPGi~  130 (389)
T COG1748          77 PPFVD-----LTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKA----GITAVLGCGFDPGIT  130 (389)
T ss_pred             Cchhh-----HHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHc----CeEEEcccCcCcchH
Confidence            65532     25677777777763333333322 3333333433    567888888877653

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=94.61  E-value=0.24  Score=39.06  Aligned_cols=61  Identities=10%  Similarity=0.011  Sum_probs=41.1

Q ss_pred             CEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-cccCcccEEEEcCC
Q psy17460         51 KTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-VFKQKVDTVIMNPP  129 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~D~vi~npp  129 (216)
                      -++||+||=+.....-  ..+.-.|+.||+++           .    .-.+.++|+  .+.|.. ...++||+|.+..-
T Consensus        53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns-----------~----~~~I~qqDF--m~rplp~~~~e~FdvIs~SLV  113 (219)
T PF11968_consen   53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNS-----------Q----HPGILQQDF--MERPLPKNESEKFDVISLSLV  113 (219)
T ss_pred             ceEEeecccCCCCccc--ccCceeeEEeecCC-----------C----CCCceeecc--ccCCCCCCcccceeEEEEEEE
Confidence            5999999875544332  22223599999986           1    356899999  777542 23478999998653


Q ss_pred             C
Q psy17460        130 F  130 (216)
Q Consensus       130 ~  130 (216)
                      .
T Consensus       114 L  114 (219)
T PF11968_consen  114 L  114 (219)
T ss_pred             E
Confidence            3

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=94.57  E-value=0.14  Score=43.35  Aligned_cols=47  Identities=15%  Similarity=0.135  Sum_probs=38.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC---------CCEEEEEeCChHHHHHHHHhhhHh
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG---------ADFCFALECDKEILDIFIDNKNEF   95 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~---------~~~v~~iD~~~~~~~~~~~~~~~~   95 (216)
                      .+-.++|+|+|+|.++..++...         +.+++-||.|++....-+.+++..
T Consensus        77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            45589999999999987766531         468999999999998888877654

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=94.55  E-value=0.41  Score=36.18  Aligned_cols=95  Identities=20%  Similarity=0.259  Sum_probs=55.4

Q ss_pred             ccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEE
Q psy17460         25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAIL  104 (216)
Q Consensus        25 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~  104 (216)
                      .||--.+.-.+.++..+....  ..+.+|+=+||=|-...+.-......+++..|.|...-.        .+- + .|+.
T Consensus         3 sQfwYs~~T~~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~~-~-~F~f   70 (162)
T PF10237_consen    3 SQFWYSDETAEFLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FGG-D-EFVF   70 (162)
T ss_pred             cccccCHHHHHHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cCC-c-ceEE
Confidence            454445566666766666531  245789998876666554441122368999999973322        121 2 3555


Q ss_pred             ecccccccccccccCcccEEEEcCCCC
Q psy17460        105 FEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       105 ~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      -|..+..-......++||+|++||||-
T Consensus        71 yD~~~p~~~~~~l~~~~d~vv~DPPFl   97 (162)
T PF10237_consen   71 YDYNEPEELPEELKGKFDVVVIDPPFL   97 (162)
T ss_pred             CCCCChhhhhhhcCCCceEEEECCCCC
Confidence            555223222221237999999999994

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=94.23  E-value=0.089  Score=42.47  Aligned_cols=40  Identities=10%  Similarity=0.153  Sum_probs=28.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHH
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFI   89 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~   89 (216)
                      +..+++|++||+|+++..+... ...|+.-|+++..+...+
T Consensus        20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~   59 (260)
T PF02086_consen   20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWK   59 (260)
T ss_dssp             S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHH
T ss_pred             CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHH
Confidence            5679999999999999877664 358999999998876555

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=94.06  E-value=0.17  Score=35.32  Aligned_cols=54  Identities=22%  Similarity=0.247  Sum_probs=30.4

Q ss_pred             cccEEEEcCCCCCCCCCCC------------HHHHHHHhhcCCc-eEEEeeCcch--HHHHHHHHHhcC
Q psy17460        120 KVDTVIMNPPFGTRNCGID------------LAFVQYAADISKV-VYSLHKTSTR--ESILKKIQAFKN  173 (216)
Q Consensus       120 ~~D~vi~npp~~~~~~~~~------------~~~~~~~l~~~~~-ly~~~~~~~~--~~~~~~~~~~l~  173 (216)
                      .||+|+.||||........            .-|++.+++++.. +-.+.+.+-.  ....+..+++|-
T Consensus         2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll~G~~~~I~P~~~l~~~~~~~~lR~~l~   70 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLLNGYLSFITPNSFLKSGKYGKKLRKFLL   70 (106)
T ss_pred             CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHhCCeEEEEeChHHhCcCchHHHHHHHHh
Confidence            6999999999998621111            1267777777633 3334333322  334444455543

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>PTZ00357 methyltransferase; Provisional

Probab=94.03  E-value=0.17  Score=46.46  Aligned_cols=116  Identities=16%  Similarity=0.113  Sum_probs=68.1

Q ss_pred             HhhcccCCCcccCccccCCHHHHHHHHHHHHh---------------------hcCC----CCCCEEEEecCCCCHhHHH
Q psy17460         12 QLTFNFSNPKVHLEQYHTPPHLAATILHTIQN---------------------NYND----IDGKTVLDLGCGSGILTFG   66 (216)
Q Consensus        12 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---------------------~~~~----~~~~~vlD~g~GtG~~~~~   66 (216)
                      .++.-|+.+.+++.+|.  ..+...+.+....                     ..+.    .....|+-+|+|-|-+.-.
T Consensus       640 ~TYEVFEKDpVKYdqYE--~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdr  717 (1072)
T PTZ00357        640 GVYEVFERDARKYRQYR--EAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDE  717 (1072)
T ss_pred             hhHHHHcCCcHHHHHHH--HHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHH
Confidence            34466777888888877  4455555443210                     0000    0113699999999998644


Q ss_pred             Hh---Hc-CC-CEEEEEeCChHHHHHHHHhhhH-hCCC--------ceEEEEeccccccccccc---------ccCcccE
Q psy17460         67 SI---LL-GA-DFCFALECDKEILDIFIDNKNE-FEIT--------NCDAILFEINEKSLDSSV---------FKQKVDT  123 (216)
Q Consensus        67 ~~---~~-~~-~~v~~iD~~~~~~~~~~~~~~~-~~~~--------~v~~~~~d~~~~~~~~~~---------~~~~~D~  123 (216)
                      +.   +. +. -+|++||.|++.+.....+..+ ...+        .|+++..|.  .++....         .-+++|+
T Consensus       718 aLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDM--R~W~~pe~~~s~~~P~~~gKaDI  795 (1072)
T PTZ00357        718 CLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADG--RTIATAAENGSLTLPADFGLCDL  795 (1072)
T ss_pred             HHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcc--cccccccccccccccccccccce
Confidence            33   32 32 5899999997755444443211 1221        489999999  6664220         0037999


Q ss_pred             EEEc--CCCC
Q psy17460        124 VIMN--PPFG  131 (216)
Q Consensus       124 vi~n--pp~~  131 (216)
                      ||+-  -+|+
T Consensus       796 VVSELLGSFG  805 (1072)
T PTZ00357        796 IVSELLGSLG  805 (1072)
T ss_pred             ehHhhhcccc
Confidence            9973  4555

>KOG2651|consensus

Probab=93.82  E-value=0.28  Score=41.91  Aligned_cols=57  Identities=16%  Similarity=0.046  Sum_probs=39.8

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHh
Q psy17460         35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      +.+...+....+-.+-+.|+|+|+|-|.++..++....-.|.+||.|+...+.|++.
T Consensus       139 ~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  139 RRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             HHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence            344444443322224468999999999999888776556999999998776665553

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=93.45  E-value=0.63  Score=36.26  Aligned_cols=114  Identities=19%  Similarity=0.091  Sum_probs=69.2

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHH----H--HHHHhhhHhCCCceEEEEecccccccccccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEIL----D--IFIDNKNEFEITNCDAILFEINEKSLDSSVF  117 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~----~--~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  117 (216)
                      ...+|..|+|+-.|.|.++..++.. |+ +.|+++-.++...    +  ............|++.+-.+.  ..+...  
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~--~A~~~p--  120 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL--VALGAP--  120 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcc--cccCCC--
Confidence            4568999999999999999877765 55 6788776554321    1  111111112222667777776  666533  


Q ss_pred             cCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        118 KQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                       +..|++..+.-||.+ .+-.                   ...+.....+.+.+.|+| +|.++++..
T Consensus       121 -q~~d~~~~~~~yhdmh~k~i-------------------~~~~A~~vna~vf~~LKP-GGv~~V~dH  167 (238)
T COG4798         121 -QKLDLVPTAQNYHDMHNKNI-------------------HPATAAKVNAAVFKALKP-GGVYLVEDH  167 (238)
T ss_pred             -Ccccccccchhhhhhhcccc-------------------CcchHHHHHHHHHHhcCC-CcEEEEEec
Confidence             678888887777755 1111                   122344555556667788 666665444

>KOG1099|consensus

Probab=92.98  E-value=0.26  Score=39.32  Aligned_cols=68  Identities=18%  Similarity=0.081  Sum_probs=48.7

Q ss_pred             CEEEEecCCCCHhHHHHhHc--C------C--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-----
Q psy17460         51 KTVLDLGCGSGILTFGSILL--G------A--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-----  115 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~--~------~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----  115 (216)
                      ++++|+++..|+.+-.+.+.  .      .  .++++||+.+           ...++.|.-+++|+  +.....     
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaPI~GV~qlq~DI--T~~stae~Ii~  109 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAPIEGVIQLQGDI--TSASTAEAIIE  109 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCccCceEEeeccc--CCHhHHHHHHH
Confidence            58999999999999777654  1      1  2399999976           33444788899999  553211     


Q ss_pred             -cccCcccEEEEcCCCC
Q psy17460        116 -VFKQKVDTVIMNPPFG  131 (216)
Q Consensus       116 -~~~~~~D~vi~npp~~  131 (216)
                       ..+++.|+|+|+-.=.
T Consensus       110 hfggekAdlVvcDGAPD  126 (294)
T KOG1099|consen  110 HFGGEKADLVVCDGAPD  126 (294)
T ss_pred             HhCCCCccEEEeCCCCC
Confidence             2336899999986533

>KOG1596|consensus

Probab=92.87  E-value=0.67  Score=37.30  Aligned_cols=94  Identities=18%  Similarity=0.186  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhhc---CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460         33 LAATILHTIQNNY---NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI  107 (216)
Q Consensus        33 ~~~~~~~~~~~~~---~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~  107 (216)
                      ++..++.-++.-+   -..+|.+||=+|+++|+....+..- |+ .-|+++|.++..=+.....+++ . +||-.+..|+
T Consensus       137 frSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-R-tNiiPIiEDA  214 (317)
T KOG1596|consen  137 FRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-R-TNIIPIIEDA  214 (317)
T ss_pred             HHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-c-CCceeeeccC
Confidence            4445555544322   2347899999999999987666553 55 7899999987544433332222 2 2788888899


Q ss_pred             cccccccc-cccCcccEEEEcCCC
Q psy17460        108 NEKSLDSS-VFKQKVDTVIMNPPF  130 (216)
Q Consensus       108 ~~~~~~~~-~~~~~~D~vi~npp~  130 (216)
                        ...... ..-..+|+||+|.+-
T Consensus       215 --rhP~KYRmlVgmVDvIFaDvaq  236 (317)
T KOG1596|consen  215 --RHPAKYRMLVGMVDVIFADVAQ  236 (317)
T ss_pred             --CCchheeeeeeeEEEEeccCCC
Confidence              654321 112478999998654

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=92.80  E-value=0.23  Score=40.19  Aligned_cols=61  Identities=13%  Similarity=0.066  Sum_probs=40.4

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC---------CCEEEEEeCChHHHHHHHHhhhH
Q psy17460         34 AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG---------ADFCFALECDKEILDIFIDNKNE   94 (216)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~---------~~~v~~iD~~~~~~~~~~~~~~~   94 (216)
                      +..++............-.|+|+|+|+|.++..++..-         ..+++-||+|+.+.+.-++.+..
T Consensus         3 a~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen    3 ARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             HHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             HHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            34444545443112223699999999999998776541         14899999999999888888765

; PDB: 4F3N_A 1ZKD_B.

>KOG0024|consensus

Probab=92.55  E-value=0.29  Score=40.93  Aligned_cols=45  Identities=27%  Similarity=0.219  Sum_probs=38.0

Q ss_pred             CCCCCCEEEEecCC-CCHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCG-SGILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~G-tG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ....|.+||-+|+| .|..+...++. |+++|+.+|++++.++.|++
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            44678999999999 56666666664 78999999999999999998

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.53  E-value=0.78  Score=31.98  Aligned_cols=65  Identities=14%  Similarity=0.126  Sum_probs=41.5

Q ss_pred             CCCCHhHHHHhHc---CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCC
Q psy17460         58 CGSGILTFGSILL---GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus        58 ~GtG~~~~~~~~~---~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      ||.|.++..+++.   +...|+.+|.+++.++.++..       .+.++.||+.+.+......-+..|.+++.-+
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence            5666776665543   234899999999887776654       3679999994433333333367888887543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=92.53  E-value=1.6  Score=37.07  Aligned_cols=74  Identities=22%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             CCCCCCEEEEecCC-CCHhHHHHhH-cCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCG-SGILTFGSIL-LGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~G-tG~~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...+|++|+-.|+| .|.+++.+++ .| .+|+++|.+++..+.|++.-..      .++...-  .+..... .+.||+
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd------~~i~~~~--~~~~~~~-~~~~d~  232 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD------HVINSSD--SDALEAV-KEIADA  232 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc------EEEEcCC--chhhHHh-HhhCcE
Confidence            45689999999998 3335666777 46 5999999999999888776321      2333221  1111111 134999


Q ss_pred             EEEcCC
Q psy17460        124 VIMNPP  129 (216)
Q Consensus       124 vi~npp  129 (216)
                      |+..-|
T Consensus       233 ii~tv~  238 (339)
T COG1064         233 IIDTVG  238 (339)
T ss_pred             EEECCC
Confidence            997665

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.36  E-value=0.76  Score=39.05  Aligned_cols=126  Identities=12%  Similarity=0.040  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc--cccccccccCcc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE--KSLDSSVFKQKV  121 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~  121 (216)
                      +.+..++|||+|.|.|+-..++-...+  ..++-++.|+-.-+.......+.......-...|+..  ..++..   ..|
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a---d~y  186 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA---DLY  186 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc---cee
Confidence            556788999999999987776655544  6788888888555544444333332222223333310  344433   578


Q ss_pred             cEEEEcCCCCCC-CCCCCHHHHHHHhhcCC--ceEEEeeCcc--hHHHHHHHHHh-cCc
Q psy17460        122 DTVIMNPPFGTR-NCGIDLAFVQYAADISK--VVYSLHKTST--RESILKKIQAF-KNV  174 (216)
Q Consensus       122 D~vi~npp~~~~-~~~~~~~~~~~~l~~~~--~ly~~~~~~~--~~~~~~~~~~~-l~~  174 (216)
                      ++++.-.-.-.. +...-..+++..+....  ....+....+  ..+++..++.. |.+
T Consensus       187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~~  245 (484)
T COG5459         187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLAP  245 (484)
T ss_pred             ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhcC
Confidence            877753222222 22222225555555443  2333333333  45555555554 455

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=91.56  E-value=0.75  Score=33.97  Aligned_cols=53  Identities=15%  Similarity=0.133  Sum_probs=32.5

Q ss_pred             EecCCCC--HhHHHHh--HcCC-CEEEEEeCChHHHHHHHHh--hhHhCCC-ceEEEEecc
Q psy17460         55 DLGCGSG--ILTFGSI--LLGA-DFCFALECDKEILDIFIDN--KNEFEIT-NCDAILFEI  107 (216)
Q Consensus        55 D~g~GtG--~~~~~~~--~~~~-~~v~~iD~~~~~~~~~~~~--~~~~~~~-~v~~~~~d~  107 (216)
                      |+|++.|  .....++  ..++ .+|+++|.+|..++..+.+  +..+... .++++....
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~   61 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV   61 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence            8999999  5555443  3333 7899999999999999998  5544332 366665554

; PDB: 2PY6_A.

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=91.40  E-value=0.57  Score=37.83  Aligned_cols=102  Identities=12%  Similarity=0.025  Sum_probs=53.7

Q ss_pred             EEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCcccEEEEcCCCC
Q psy17460         54 LDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVDTVIMNPPFG  131 (216)
Q Consensus        54 lD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D~vi~npp~~  131 (216)
                      +..-.|+-.++..+.+.. .+.+.+|+.+.-.+..+.++....  ++.+...|.  .+-...  .+.+.==+|++||||.
T Consensus        62 l~~YPGSP~ia~~llR~q-Drl~l~ELHp~d~~~L~~~~~~~~--~v~v~~~DG--~~~l~allPP~~rRglVLIDPpYE  136 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQ-DRLVLFELHPQDFEALKKNFRRDR--RVRVHHRDG--YEGLKALLPPPERRGLVLIDPPYE  136 (245)
T ss_dssp             --EEE-HHHHHHHHS-TT-SEEEEE--SHHHHHHHTTS--TTS---EEEE-S-H--HHHHHHH-S-TTS-EEEEE-----
T ss_pred             cCcCCCCHHHHHHhCCcc-ceEEEEecCchHHHHHHHHhccCC--ccEEEeCch--hhhhhhhCCCCCCCeEEEECCCCC
Confidence            667777777777766653 599999999999999988876533  799999999  773211  1114567999999998


Q ss_pred             CC-CCCCCHHHHHHHhhcCCc-eE-EEeeCcc
Q psy17460        132 TR-NCGIDLAFVQYAADISKV-VY-SLHKTST  160 (216)
Q Consensus       132 ~~-~~~~~~~~~~~~l~~~~~-ly-~~~~~~~  160 (216)
                      .. +.....+.+.++++.... +| ..++..+
T Consensus       137 ~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~  168 (245)
T PF04378_consen  137 QKDDYQRVVDALAKALKRWPTGVYAIWYPIKD  168 (245)
T ss_dssp             STTHHHHHHHHHHHHHHH-TTSEEEEEEEESS
T ss_pred             CchHHHHHHHHHHHHHHhcCCcEEEEEeeccc
Confidence            66 222234455566655544 33 3444444

; PDB: 2OO3_A.

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=91.03  E-value=4.9  Score=30.44  Aligned_cols=120  Identities=14%  Similarity=0.115  Sum_probs=59.3

Q ss_pred             ecCCCCHhHHHHhHc-C-CCEEEEEeCCh--HHHHH---HHHhhhHhCCCceE-EEEecccccccccccccCcccEEEEc
Q psy17460         56 LGCGSGILTFGSILL-G-ADFCFALECDK--EILDI---FIDNKNEFEITNCD-AILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        56 ~g~GtG~~~~~~~~~-~-~~~v~~iD~~~--~~~~~---~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      +|=|.-+++..+++. + +.++++.-.+.  +..+.   +..|+....-.++. ...-|+.+..-........||.|+.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            444555556666654 4 45677655443  33322   33455444222333 34556622222222244789999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCC
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLN  188 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  188 (216)
                      -|..-........-+..-..+.            ..+++.+..+|.+ +|.+.+...-..+
T Consensus        83 FPH~G~~~~~~~~~i~~nr~Ll------------~~Ff~Sa~~~L~~-~G~IhVTl~~~~p  130 (166)
T PF10354_consen   83 FPHVGGGSEDGKRNIRLNRELL------------RGFFKSASQLLKP-DGEIHVTLKDGQP  130 (166)
T ss_pred             CCCCCCCccchhHHHHHHHHHH------------HHHHHHHHHhcCC-CCEEEEEeCCCCC
Confidence            9987521111111111111111            2455666777777 7777765554433

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=90.65  E-value=8.3  Score=31.88  Aligned_cols=121  Identities=13%  Similarity=0.142  Sum_probs=62.3

Q ss_pred             CCCCEEEEecCCCCHh-HHH--HhHcCCCEEEEEeCChH---HHHHHHHhhhHhCCCceEEEEecccccccccccccCcc
Q psy17460         48 IDGKTVLDLGCGSGIL-TFG--SILLGADFCFALECDKE---ILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKV  121 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~-~~~--~~~~~~~~v~~iD~~~~---~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  121 (216)
                      .++++++-+|+| |.- ++.  ++..|..+|+.++.++.   ..+.....+....- .+.+...|+.+.+-. ......+
T Consensus       124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~-~~~~~~~d~~~~~~~-~~~~~~~  200 (289)
T PRK12548        124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVP-ECIVNVYDLNDTEKL-KAEIASS  200 (289)
T ss_pred             cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCC-CceeEEechhhhhHH-HhhhccC
Confidence            467889999997 542 222  44567667999999863   22222222222111 334445555211111 0011357


Q ss_pred             cEEEEcCCCCCCCCCCCHHH-HHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460        122 DTVIMNPPFGTRNCGIDLAF-VQYAADISKVVYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus       122 D~vi~npp~~~~~~~~~~~~-~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~  171 (216)
                      |+||.+=|-+.......... ....+.....+|.+.+....-.+++.+++.
T Consensus       201 DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~  251 (289)
T PRK12548        201 DILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLEDAEAA  251 (289)
T ss_pred             CEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHHHHHHC
Confidence            99998877765411111001 012233223377777766667777777765

>KOG3924|consensus

Probab=90.20  E-value=0.67  Score=39.78  Aligned_cols=95  Identities=15%  Similarity=0.122  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhH-------hCCC--ce
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNE-------FEIT--NC  100 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~-------~~~~--~v  100 (216)
                      +...+.+.+.+.. +...+++...|+|.|.|.+....+.+ +...-+|+++.+..-+.+..+.+.       .|..  .+
T Consensus       175 E~~~~ql~si~dE-l~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~  253 (419)
T KOG3924|consen  175 ETQLEQLRSIVDE-LKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKI  253 (419)
T ss_pred             hhhHHHHHHHHHH-hccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCce
Confidence            3344455444443 36678889999999999998775555 457889999887777666555333       3432  58


Q ss_pred             EEEEecccccccccc-cccCcccEEEEcC
Q psy17460        101 DAILFEINEKSLDSS-VFKQKVDTVIMNP  128 (216)
Q Consensus       101 ~~~~~d~~~~~~~~~-~~~~~~D~vi~np  128 (216)
                      +.+.+++  ...... ......++|++|-
T Consensus       254 ~~i~gsf--~~~~~v~eI~~eatvi~vNN  280 (419)
T KOG3924|consen  254 ETIHGSF--LDPKRVTEIQTEATVIFVNN  280 (419)
T ss_pred             eeccccc--CCHHHHHHHhhcceEEEEec
Confidence            8999999  554321 1224678888764

>PRK05867 short chain dehydrogenase; Provisional

Probab=90.02  E-value=1.9  Score=34.33  Aligned_cols=82  Identities=16%  Similarity=0.177  Sum_probs=52.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-...      ..-
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGG-KVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            367899999976654   2233555565 899999998877766655544442 67888899832221100      011


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|.+|.|....
T Consensus        85 g~id~lv~~ag~~   97 (253)
T PRK05867         85 GGIDIAVCNAGII   97 (253)
T ss_pred             CCCCEEEECCCCC
Confidence            4789999887654

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=90.02  E-value=3.1  Score=33.66  Aligned_cols=112  Identities=15%  Similarity=0.071  Sum_probs=72.6

Q ss_pred             EEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCcccEEEEcCCCC
Q psy17460         54 LDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVDTVIMNPPFG  131 (216)
Q Consensus        54 lD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D~vi~npp~~  131 (216)
                      |..-||+-.++..+.+.. .++.+.|+.|.=....+.++..  ..++.+..+|-  ..-...  .+++.=-+|+.||||.
T Consensus        93 l~~YpGSP~lA~~llR~q-DRl~l~ELHp~D~~~L~~~f~~--d~~vrv~~~DG--~~~l~a~LPP~erRglVLIDPPfE  167 (279)
T COG2961          93 LRYYPGSPLLARQLLREQ-DRLVLTELHPSDAPLLRNNFAG--DRRVRVLRGDG--FLALKAHLPPKERRGLVLIDPPFE  167 (279)
T ss_pred             cccCCCCHHHHHHHcchh-ceeeeeecCccHHHHHHHHhCC--CcceEEEecCc--HHHHhhhCCCCCcceEEEeCCCcc
Confidence            899999999988777764 4899999999999999998873  33899999997  553211  1225678999999997


Q ss_pred             CCC-CCCCHHHHHHHhhcCCc-eEEE-eeCcchHHHHHHHHH
Q psy17460        132 TRN-CGIDLAFVQYAADISKV-VYSL-HKTSTRESILKKIQA  170 (216)
Q Consensus       132 ~~~-~~~~~~~~~~~l~~~~~-ly~~-~~~~~~~~~~~~~~~  170 (216)
                      ..+ .....+-+.++++-... +|.+ ++..+...+.....+
T Consensus       168 ~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~  209 (279)
T COG2961         168 LKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRA  209 (279)
T ss_pred             cccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHH
Confidence            551 11112233344433333 5544 444455555444443

>PRK07904 short chain dehydrogenase; Provisional

Probab=90.01  E-value=1.8  Score=34.74  Aligned_cols=82  Identities=15%  Similarity=0.095  Sum_probs=48.8

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHH-HHHHHHhhhHhCCCceEEEEecccccccc---cc--ccc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEI-LDIFIDNKNEFEITNCDAILFEINEKSLD---SS--VFK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~-~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~--~~~  118 (216)
                      .+++||-.|++.|. +..    +++.|..+|+.++.+++. ++.+.+.+...+..++.++.+|+.+.+-.   ..  ...
T Consensus         7 ~~~~vlItGas~gi-G~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~   85 (253)
T PRK07904          7 NPQTILLLGGTSEI-GLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG   85 (253)
T ss_pred             CCcEEEEEcCCcHH-HHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence            56789998985544 433    334443589999888764 55544444443322688999998332211   01  011


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +..|+++.|....
T Consensus        86 g~id~li~~ag~~   98 (253)
T PRK07904         86 GDVDVAIVAFGLL   98 (253)
T ss_pred             CCCCEEEEeeecC
Confidence            4799998876543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=89.65  E-value=1.5  Score=40.61  Aligned_cols=77  Identities=10%  Similarity=0.004  Sum_probs=45.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC-------------CCEEEEEeCCh---HHHHHHH-----------HhhhH-----hC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG-------------ADFCFALECDK---EILDIFI-----------DNKNE-----FE   96 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~-------------~~~v~~iD~~~---~~~~~~~-----------~~~~~-----~~   96 (216)
                      +.-+|+|+|-|+|...+...+..             .-+++++|..|   +.+..+.           .....     .+
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            34699999999999765544211             13788999754   2222221           11111     12


Q ss_pred             C-------C--ceEEEEecccccccccccccCcccEEEEcC
Q psy17460         97 I-------T--NCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        97 ~-------~--~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      +       .  .++++.||+  .+...... ..+|+++.|+
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~--~~~~~~~~-~~~d~~~lD~  174 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDA--NELLPQLD-ARADAWFLDG  174 (662)
T ss_pred             ceEEEecCCcEEEEEEecCH--HHHHHhcc-ccccEEEeCC
Confidence            1       1  467888999  65443321 4699999985

>PRK08339 short chain dehydrogenase; Provisional

Probab=89.62  E-value=2.8  Score=33.84  Aligned_cols=81  Identities=14%  Similarity=0.105  Sum_probs=51.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh-CCCceEEEEeccccccccccc-----cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEF-EITNCDAILFEINEKSLDSSV-----FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~-----~~  118 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+... +. ++.++.+|+.+.+-....     .-
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~   83 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNV-DVSYIVADLTKREDLERTVKELKNI   83 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCC-ceEEEEecCCCHHHHHHHHHHHHhh
Confidence            367888988877665   2344555665 8999999987776665554332 22 688899998332211100     01


Q ss_pred             CcccEEEEcCCC
Q psy17460        119 QKVDTVIMNPPF  130 (216)
Q Consensus       119 ~~~D~vi~npp~  130 (216)
                      +.+|+++.|.-.
T Consensus        84 g~iD~lv~nag~   95 (263)
T PRK08339         84 GEPDIFFFSTGG   95 (263)
T ss_pred             CCCcEEEECCCC
Confidence            468999988643

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=89.26  E-value=2.3  Score=33.54  Aligned_cols=89  Identities=11%  Similarity=0.157  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCC----HhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEe
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSG----ILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITN-CDAILF  105 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG----~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~  105 (216)
                      ..+|.+-.+...    ..-+.+++..|+-|    ++++.+|.+ -.+++++|..++..+...++.+...++.+ ++|+.|
T Consensus        28 ~~aEfISAlAAG----~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg  103 (218)
T PF07279_consen   28 GVAEFISALAAG----WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVG  103 (218)
T ss_pred             CHHHHHHHHhcc----ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEec
Confidence            355555555543    25568999866543    234443333 23689999999988888888887777654 699999


Q ss_pred             cccccc-cccccccCcccEEEEcC
Q psy17460        106 EINEKS-LDSSVFKQKVDTVIMNP  128 (216)
Q Consensus       106 d~~~~~-~~~~~~~~~~D~vi~np  128 (216)
                      +.  .+ .....  ...|+++.|-
T Consensus       104 ~~--~e~~~~~~--~~iDF~vVDc  123 (218)
T PF07279_consen  104 EA--PEEVMPGL--KGIDFVVVDC  123 (218)
T ss_pred             CC--HHHHHhhc--cCCCEEEEeC
Confidence            85  33 33232  5789988765

The function of this family is unknown.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=88.96  E-value=2.2  Score=33.67  Aligned_cols=77  Identities=16%  Similarity=0.060  Sum_probs=45.1

Q ss_pred             CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCCh------------------HHHHHHHHhhhHhCCC-ceEEEEecc
Q psy17460         49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECDK------------------EILDIFIDNKNEFEIT-NCDAILFEI  107 (216)
Q Consensus        49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~~------------------~~~~~~~~~~~~~~~~-~v~~~~~d~  107 (216)
                      ...+|+-+||| .|+. +..++..|..+++.+|.+.                  .-.+.+.++++...-. +++.+...+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i  106 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI  106 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence            56789999998 4664 4557777778899999872                  2233444444433221 455565555


Q ss_pred             cccccccccccCcccEEEEc
Q psy17460        108 NEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus       108 ~~~~~~~~~~~~~~D~vi~n  127 (216)
                        ........-..+|+|+..
T Consensus       107 --~~~~~~~~~~~~DvVI~a  124 (212)
T PRK08644        107 --DEDNIEELFKDCDIVVEA  124 (212)
T ss_pred             --CHHHHHHHHcCCCEEEEC
Confidence              221111111579999954

>PRK05876 short chain dehydrogenase; Provisional

Probab=88.93  E-value=2.4  Score=34.48  Aligned_cols=82  Identities=17%  Similarity=0.145  Sum_probs=51.0

Q ss_pred             CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      ..++++|-.|++.|.-   +..++..|. +|+.++.++..++.....+...+. ++.++.+|+.+.+-...      ..-
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4678899888765542   233445565 799999988777665555544343 57888999833221111      011


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +..|++|.|....
T Consensus        82 g~id~li~nAg~~   94 (275)
T PRK05876         82 GHVDVVFSNAGIV   94 (275)
T ss_pred             CCCCEEEECCCcC
Confidence            4689999987653

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=88.68  E-value=2.1  Score=38.63  Aligned_cols=84  Identities=18%  Similarity=0.139  Sum_probs=60.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHHHHHhhhHh-CCCceEEEEecccccccccc-cccCcc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSIL----LGADFCFALECDKEILDIFIDNKNEF-EITNCDAILFEINEKSLDSS-VFKQKV  121 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~-~~~~~~  121 (216)
                      ..|++||-.| |+|+++.++++    .++.+++-+|.|+..+......+... +..++.++.||+.+.+.... ...-++
T Consensus       248 ~~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv  326 (588)
T COG1086         248 LTGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV  326 (588)
T ss_pred             cCCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence            4678888777 56888766554    46789999999999999888887653 32278999999955543322 122469


Q ss_pred             cEEEEcCCCCC
Q psy17460        122 DTVIMNPPFGT  132 (216)
Q Consensus       122 D~vi~npp~~~  132 (216)
                      |+||--..|-+
T Consensus       327 d~VfHAAA~KH  337 (588)
T COG1086         327 DIVFHAAALKH  337 (588)
T ss_pred             ceEEEhhhhcc
Confidence            99997665554

>PRK05866 short chain dehydrogenase; Provisional

Probab=88.26  E-value=3.4  Score=34.00  Aligned_cols=80  Identities=23%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .+++||-.|++.|. +..    +++.|. +|+.++.+++.++.....+...+. .+.++.+|+.+.+.....      .-
T Consensus        39 ~~k~vlItGasggI-G~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~  115 (293)
T PRK05866         39 TGKRILLTGASSGI-GEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRI  115 (293)
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            56788888875544 333    444554 899999998877666555544333 577889998332211110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +..|++|.|.-..
T Consensus       116 g~id~li~~AG~~  128 (293)
T PRK05866        116 GGVDILINNAGRS  128 (293)
T ss_pred             CCCCEEEECCCCC
Confidence            4789999886543

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=88.04  E-value=8.3  Score=30.89  Aligned_cols=81  Identities=17%  Similarity=0.176  Sum_probs=52.3

Q ss_pred             CCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460         49 DGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ  119 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~  119 (216)
                      +++++|-.|++.|.-   +..++..|. +|+.++.+++.++.....+...+. ++.++.+|+.+.+-....      .-+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            678899998876552   233555565 788889988877766666654443 688899999322211110      114


Q ss_pred             cccEEEEcCCCC
Q psy17460        120 KVDTVIMNPPFG  131 (216)
Q Consensus       120 ~~D~vi~npp~~  131 (216)
                      .+|.++.|....
T Consensus        87 ~id~li~~ag~~   98 (265)
T PRK07097         87 VIDILVNNAGII   98 (265)
T ss_pred             CCCEEEECCCCC
Confidence            689999887654

>PRK06139 short chain dehydrogenase; Provisional

Probab=88.01  E-value=3.5  Score=34.77  Aligned_cols=82  Identities=18%  Similarity=0.213  Sum_probs=52.7

Q ss_pred             CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..+++||-.|++.|.-   +..++..|. +|+.++.+++.++.....+...+. ++.++..|+.+.+-....      ..
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~   82 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFG   82 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            3677888888755442   233555565 899999999888777666655554 677888898332211110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        83 g~iD~lVnnAG~~   95 (330)
T PRK06139         83 GRIDVWVNNVGVG   95 (330)
T ss_pred             CCCCEEEECCCcC
Confidence            4689999987543

>PRK06194 hypothetical protein; Provisional

Probab=87.77  E-value=2.8  Score=34.08  Aligned_cols=81  Identities=12%  Similarity=0.138  Sum_probs=48.9

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .++++|-.|++ |.++..    ++..|. +|+.+|.+++..+.....+...+. ++.++.+|+.+.+-....      .-
T Consensus         5 ~~k~vlVtGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          5 AGKVAVITGAA-SGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCCEEEEeCCc-cHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            56788877754 444444    444554 899999988766655544443333 688899999332211110      01


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|+|+.|.-...
T Consensus        82 g~id~vi~~Ag~~~   95 (287)
T PRK06194         82 GAVHLLFNNAGVGA   95 (287)
T ss_pred             CCCCEEEECCCCCC
Confidence            35799998876543

>PRK07063 short chain dehydrogenase; Provisional

Probab=87.40  E-value=4  Score=32.59  Aligned_cols=81  Identities=15%  Similarity=0.126  Sum_probs=50.7

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh--CCCceEEEEeccccccccccc------
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEF--EITNCDAILFEINEKSLDSSV------  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~------  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...  +. ++.++.+|+.+.+-....      
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~   82 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGA-RVLAVPADVTDAASVAAAVAAAEE   82 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCc-eEEEEEccCCCHHHHHHHHHHHHH
Confidence            367889988876544   2233445565 8999999988777666655442  22 688899998332211110      


Q ss_pred             ccCcccEEEEcCCC
Q psy17460        117 FKQKVDTVIMNPPF  130 (216)
Q Consensus       117 ~~~~~D~vi~npp~  130 (216)
                      .-+.+|.+|.|...
T Consensus        83 ~~g~id~li~~ag~   96 (260)
T PRK07063         83 AFGPLDVLVNNAGI   96 (260)
T ss_pred             HhCCCcEEEECCCc
Confidence            11468999988654

>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]

Probab=87.07  E-value=0.89  Score=42.32  Aligned_cols=44  Identities=20%  Similarity=0.259  Sum_probs=37.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhh
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNK   92 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~   92 (216)
                      ..+..++|+++|-|++.+++++.|. .|+++|.+|-+.-..+..+
T Consensus        89 ~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavl  132 (875)
T COG1743          89 FEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVL  132 (875)
T ss_pred             ccCCcccccccCCCccchHHHhcCc-eeEEEecccHHHHHHHHHH
Confidence            4567899999999999999999995 9999999998876555543

>PRK05854 short chain dehydrogenase; Provisional

Probab=86.89  E-value=7  Score=32.48  Aligned_cols=82  Identities=10%  Similarity=0.042  Sum_probs=50.7

Q ss_pred             CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSS------VF  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~------~~  117 (216)
                      ..+++++-.|++.|.-   +..+++.|. +|+.+..+.+..+.+...+....- .++.++.+|+.+.+-...      ..
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            3678899888766552   233455565 899999888776666555543221 168889999933221110      01


Q ss_pred             cCcccEEEEcCCC
Q psy17460        118 KQKVDTVIMNPPF  130 (216)
Q Consensus       118 ~~~~D~vi~npp~  130 (216)
                      ....|++|.|.-.
T Consensus        91 ~~~iD~li~nAG~  103 (313)
T PRK05854         91 GRPIHLLINNAGV  103 (313)
T ss_pred             CCCccEEEECCcc
Confidence            1468999988654

>PRK09291 short chain dehydrogenase; Provisional

Probab=86.74  E-value=5.2  Score=31.76  Aligned_cols=78  Identities=14%  Similarity=0.065  Sum_probs=46.4

Q ss_pred             CEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         51 KTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++||-.|++ |.++..+    +..|. +|++++.++.............+. ++.++.+|+.+.+-.........|.||.
T Consensus         3 ~~vlVtGas-g~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~   79 (257)
T PRK09291          3 KTILITGAG-SGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLN   79 (257)
T ss_pred             CEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence            467877764 4444433    34454 899998887665555444443343 6888999993322111111147999998


Q ss_pred             cCCCC
Q psy17460        127 NPPFG  131 (216)
Q Consensus       127 npp~~  131 (216)
                      |..+.
T Consensus        80 ~ag~~   84 (257)
T PRK09291         80 NAGIG   84 (257)
T ss_pred             CCCcC
Confidence            86543

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=86.74  E-value=4.5  Score=29.70  Aligned_cols=81  Identities=20%  Similarity=0.105  Sum_probs=50.8

Q ss_pred             EEEEecCCCCH---hHHHHhHcCCCEEEEEeCC--hHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccCc
Q psy17460         52 TVLDLGCGSGI---LTFGSILLGADFCFALECD--KEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQK  120 (216)
Q Consensus        52 ~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~--~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~  120 (216)
                      .+|=.|+++|.   ++..+++.|...|+.+..+  .+..+.....+...+ .++.++.+|+.+.+-...      .....
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence            56667766554   2334555566788999988  555555555555445 389999999833221111      12268


Q ss_pred             ccEEEEcCCCCCC
Q psy17460        121 VDTVIMNPPFGTR  133 (216)
Q Consensus       121 ~D~vi~npp~~~~  133 (216)
                      +|++|.|......
T Consensus        81 ld~li~~ag~~~~   93 (167)
T PF00106_consen   81 LDILINNAGIFSD   93 (167)
T ss_dssp             ESEEEEECSCTTS
T ss_pred             ccccccccccccc
Confidence            9999998877654

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=86.64  E-value=4.7  Score=31.75  Aligned_cols=81  Identities=10%  Similarity=0.028  Sum_probs=49.3

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .+++||-.|+ +|.++..    +++.|. +|++++.++.........+...+. ++.++.+|+.+.+-....      .-
T Consensus         5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12826          5 EGRVALVTGA-ARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGG-KARARQVDVRDRAALKAAVAAGVEDF   81 (251)
T ss_pred             CCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            5678887775 4555544    344454 899999987666555554444332 588999999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      ..+|.|+.+.....
T Consensus        82 ~~~d~vi~~ag~~~   95 (251)
T PRK12826         82 GRLDILVANAGIFP   95 (251)
T ss_pred             CCCCEEEECCCCCC
Confidence            36899998875543

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=86.53  E-value=1.6  Score=37.19  Aligned_cols=44  Identities=27%  Similarity=0.443  Sum_probs=35.6

Q ss_pred             CCCEEEEecCC-CCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhh
Q psy17460         49 DGKTVLDLGCG-SGILTFGSILL-GADFCFALECDKEILDIFIDNK   92 (216)
Q Consensus        49 ~~~~vlD~g~G-tG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~   92 (216)
                      ++.+|+-+||| .|.++..+++. |+..|+++|.+++-++.|++..
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~  213 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG  213 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence            44489999999 46666666664 6789999999999999998854

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=86.29  E-value=5.8  Score=38.81  Aligned_cols=125  Identities=14%  Similarity=0.136  Sum_probs=72.9

Q ss_pred             CCCEEEEecCC-CCHhHHH-HhHcCCC-------------EEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc
Q psy17460         49 DGKTVLDLGCG-SGILTFG-SILLGAD-------------FCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD  113 (216)
Q Consensus        49 ~~~~vlD~g~G-tG~~~~~-~~~~~~~-------------~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  113 (216)
                      ..++|+-+||| .|..... ++.....             .|+..|.+++..+.+....     ++++.+..|+  .+..
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~-----~~~~~v~lDv--~D~e  640 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI-----ENAEAVQLDV--SDSE  640 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc-----CCCceEEeec--CCHH
Confidence            35689999997 3554433 4333222             3788899886665544432     1456677776  3322


Q ss_pred             cccc-cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEee-CcchHHHHHHHHHhcCccceeeeeeeecCCCc
Q psy17460        114 SSVF-KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHK-TSTRESILKKIQAFKNVEQVDVIAEMKYDLNQ  189 (216)
Q Consensus       114 ~~~~-~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  189 (216)
                      .... -...|+|++..|+..     +......|++.+..+++.-. ......+.+.+.+-    +..++.++++..+-
T Consensus       641 ~L~~~v~~~DaVIsalP~~~-----H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~A----GV~~m~e~GlDPGi  709 (1042)
T PLN02819        641 SLLKYVSQVDVVISLLPASC-----HAVVAKACIELKKHLVTASYVSEEMSALDSKAKEA----GITILCEMGLDPGI  709 (1042)
T ss_pred             HHHHhhcCCCEEEECCCchh-----hHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHc----CCEEEECCccCHHH
Confidence            1110 035999998888742     34567788888877554431 11234444444443    66788888855443

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=86.02  E-value=11  Score=27.25  Aligned_cols=63  Identities=10%  Similarity=0.107  Sum_probs=34.1

Q ss_pred             CCCEEEEecCCCCH-hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGI-LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~-~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      +..+|+|+|.|.=. .+..+.+.|. .|+++|+++.       ++. .   .+.++..|+  ++.....- ...|+|++
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~-~---g~~~v~DDi--f~P~l~iY-~~a~lIYS   76 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP-E---GVNFVVDDI--FNPNLEIY-EGADLIYS   76 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---S--SS--HHHH-TTEEEEEE
T ss_pred             CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc-c---Ccceeeecc--cCCCHHHh-cCCcEEEE
Confidence            33499999999776 4566777775 8999999985       222 1   578999999  66432211 46677774

; PDB: 2K4M_A.

>PRK07478 short chain dehydrogenase; Provisional

Probab=85.98  E-value=5.5  Score=31.64  Aligned_cols=80  Identities=16%  Similarity=0.086  Sum_probs=49.9

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ  119 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~  119 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...+. ++.++.+|+.+.+-....      .-+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRDEAYAKALVALAVERFG   82 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            56788888776543   2233445565 899999988777666555544443 678888998332211100      114


Q ss_pred             cccEEEEcCCC
Q psy17460        120 KVDTVIMNPPF  130 (216)
Q Consensus       120 ~~D~vi~npp~  130 (216)
                      .+|.+|.|...
T Consensus        83 ~id~li~~ag~   93 (254)
T PRK07478         83 GLDIAFNNAGT   93 (254)
T ss_pred             CCCEEEECCCC
Confidence            78999988754

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=85.91  E-value=2.6  Score=35.69  Aligned_cols=46  Identities=24%  Similarity=0.280  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEecCC-CCHhHHHHhH-cCCCEEEEEeCChHHHHHHHHh
Q psy17460         46 NDIDGKTVLDLGCG-SGILTFGSIL-LGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        46 ~~~~~~~vlD~g~G-tG~~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      +..+|..|.-+||| .|..++.-++ .++.+++++|+++..+++|++.
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f  229 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF  229 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence            44678889999887 4545555443 5778999999999999888764

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=85.40  E-value=6.5  Score=30.97  Aligned_cols=80  Identities=18%  Similarity=0.180  Sum_probs=49.0

Q ss_pred             CCCEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      +++++|-.|++ |.++..+    ++.|. +|+.++.+++....+...+...+. ++.++.+|+.+.+-....      ..
T Consensus         2 ~~~~ilItGas-~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         2 KDKTAIVTGGG-GGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGG-NAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46778888864 4444443    34454 899999988776666555544332 688999998322211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      ...|.+|.+....
T Consensus        79 ~~~d~vi~~ag~~   91 (250)
T TIGR03206        79 GPVDVLVNNAGWD   91 (250)
T ss_pred             CCCCEEEECCCCC
Confidence            3589999887653

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=85.33  E-value=4.8  Score=37.00  Aligned_cols=67  Identities=12%  Similarity=0.024  Sum_probs=43.2

Q ss_pred             EEEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         52 TVLDLGCGSGILTFGSIL----LGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .|+=+|  -|.++..+++    .+ ..++.+|.|++.++.+++.       ...++.||+.+.+......-+..|.+++.
T Consensus       402 ~vII~G--~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        402 QVIIVG--FGRFGQVIGRLLMANK-MRITVLERDISAVNLMRKY-------GYKVYYGDATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             CEEEec--CchHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHhC-------CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence            355545  5555544433    33 4899999999998887642       46799999954444433333678888874


Q ss_pred             C
Q psy17460        128 P  128 (216)
Q Consensus       128 p  128 (216)
                      -
T Consensus       472 ~  472 (601)
T PRK03659        472 C  472 (601)
T ss_pred             e
Confidence            4

>KOG0022|consensus

Probab=85.17  E-value=2.6  Score=35.44  Aligned_cols=45  Identities=18%  Similarity=0.104  Sum_probs=33.4

Q ss_pred             CCCCCEEEEecCCCCHhH-HHHhH-cCCCEEEEEeCChHHHHHHHHh
Q psy17460         47 DIDGKTVLDLGCGSGILT-FGSIL-LGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~-~~~~~-~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ..+|..+.-.|+|.=.++ ..-++ .|+++++|||++++-.+.|+..
T Consensus       190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f  236 (375)
T KOG0022|consen  190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF  236 (375)
T ss_pred             cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence            357788888888754444 44333 4789999999999999888764

>PRK08643 acetoin reductase; Validated

Probab=84.95  E-value=15  Score=29.06  Aligned_cols=79  Identities=15%  Similarity=0.148  Sum_probs=48.1

Q ss_pred             CCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccC
Q psy17460         50 GKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQ  119 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~  119 (216)
                      ++++|-.|+..| ++..    +++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-...      ..-+
T Consensus         2 ~k~~lItGas~g-iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          2 SKVALVTGAGQG-IGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGG-KAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            456777775544 4433    444454 899999988777666655544333 67888999933221101      0114


Q ss_pred             cccEEEEcCCCC
Q psy17460        120 KVDTVIMNPPFG  131 (216)
Q Consensus       120 ~~D~vi~npp~~  131 (216)
                      ..|.+|.|..+.
T Consensus        79 ~id~vi~~ag~~   90 (256)
T PRK08643         79 DLNVVVNNAGVA   90 (256)
T ss_pred             CCCEEEECCCCC
Confidence            689999887553

>KOG0725|consensus

Probab=84.87  E-value=10  Score=31.02  Aligned_cols=82  Identities=21%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccc-------
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSS-------  115 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~-------  115 (216)
                      ..++++|-.|.++|.   .+..+++.|+ +|+..+.+++.++.....+...+..  ++..+.+|+  .+.+..       
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv--~~~~~~~~l~~~~   82 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDV--SKEVDVEKLVEFA   82 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcC--CCHHHHHHHHHHH
Confidence            578999999999887   3456777776 8999999999988877776655542  588999999  543210       


Q ss_pred             -cc-cCcccEEEEcCCCCC
Q psy17460        116 -VF-KQKVDTVIMNPPFGT  132 (216)
Q Consensus       116 -~~-~~~~D~vi~npp~~~  132 (216)
                       .. .++.|+++.|.-...
T Consensus        83 ~~~~~GkidiLvnnag~~~  101 (270)
T KOG0725|consen   83 VEKFFGKIDILVNNAGALG  101 (270)
T ss_pred             HHHhCCCCCEEEEcCCcCC
Confidence             01 267999998865544

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=84.76  E-value=3.4  Score=32.25  Aligned_cols=33  Identities=21%  Similarity=0.160  Sum_probs=25.6

Q ss_pred             CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCC
Q psy17460         49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECD   81 (216)
Q Consensus        49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~   81 (216)
                      .+.+|+-+||| .|+. +..++..|..+++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            56789999998 4554 455777787899999977

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=84.67  E-value=4  Score=34.67  Aligned_cols=77  Identities=14%  Similarity=0.103  Sum_probs=45.9

Q ss_pred             CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCCh---------------------HHHHHHHHhhhHhCCC-ceEEEE
Q psy17460         49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECDK---------------------EILDIFIDNKNEFEIT-NCDAIL  104 (216)
Q Consensus        49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~~---------------------~~~~~~~~~~~~~~~~-~v~~~~  104 (216)
                      .+.+|+-+||| .|+. +..++..|..+++.+|.|.                     .-.+.+++.++...-. +++.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~  102 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV  102 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence            56789999998 4553 3446777778999999874                     1233444444443221 566676


Q ss_pred             ecccccccccccccCcccEEEEc
Q psy17460        105 FEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus       105 ~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++  ..-.....-..+|+|+..
T Consensus       103 ~~~--~~~~~~~~~~~~DlVid~  123 (338)
T PRK12475        103 TDV--TVEELEELVKEVDLIIDA  123 (338)
T ss_pred             ccC--CHHHHHHHhcCCCEEEEc
Confidence            666  321111111578999864

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=84.56  E-value=6.8  Score=31.62  Aligned_cols=80  Identities=15%  Similarity=0.057  Sum_probs=48.9

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ  119 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~  119 (216)
                      ++++++-.|++.|.   ++..++..|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .-+
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGG-EALAVKADVLDKESLEQARQQILEDFG   86 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            57788888876554   1233445565 899999988766655554443333 678899998322211110      114


Q ss_pred             cccEEEEcCCC
Q psy17460        120 KVDTVIMNPPF  130 (216)
Q Consensus       120 ~~D~vi~npp~  130 (216)
                      .+|.+|.|...
T Consensus        87 ~id~li~~ag~   97 (278)
T PRK08277         87 PCDILINGAGG   97 (278)
T ss_pred             CCCEEEECCCC
Confidence            78999988653

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=83.90  E-value=8.4  Score=30.43  Aligned_cols=81  Identities=15%  Similarity=0.114  Sum_probs=49.3

Q ss_pred             CCCCEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc--------cc
Q psy17460         48 IDGKTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD--------SS  115 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~  115 (216)
                      .++++||-.|+ +|.++..+    ++.|. +|++++.+++..+.....+...+..++.++.+|+.+.+..        ..
T Consensus        10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945         10 LKDRIILVTGA-GDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             cCCCEEEEeCC-CchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            36788998885 55555443    34454 8999999987776655555444433577888887211110        01


Q ss_pred             cccCcccEEEEcCCC
Q psy17460        116 VFKQKVDTVIMNPPF  130 (216)
Q Consensus       116 ~~~~~~D~vi~npp~  130 (216)
                      ..-.++|.||.+...
T Consensus        88 ~~~~~id~vi~~Ag~  102 (247)
T PRK08945         88 EQFGRLDGVLHNAGL  102 (247)
T ss_pred             HHhCCCCEEEECCcc
Confidence            111468999987643

>PRK07102 short chain dehydrogenase; Provisional

Probab=83.77  E-value=7  Score=30.82  Aligned_cols=78  Identities=15%  Similarity=0.156  Sum_probs=45.8

Q ss_pred             CEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc---cccCcccE
Q psy17460         51 KTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS---VFKQKVDT  123 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~~~D~  123 (216)
                      ++++-.|+ +|.++..+    ++.|. +|++++.+++..+.....+...+-.++.++.+|+.+.+-...   .....+|.
T Consensus         2 ~~vlItGa-s~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~   79 (243)
T PRK07102          2 KKILIIGA-TSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI   79 (243)
T ss_pred             cEEEEEcC-CcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence            46777774 45555443    34454 899999988766554444433222278899999933221111   11135799


Q ss_pred             EEEcCCC
Q psy17460        124 VIMNPPF  130 (216)
Q Consensus       124 vi~npp~  130 (216)
                      ++.+..+
T Consensus        80 vv~~ag~   86 (243)
T PRK07102         80 VLIAVGT   86 (243)
T ss_pred             EEECCcC
Confidence            9987654

>PRK09072 short chain dehydrogenase; Provisional

Probab=83.76  E-value=17  Score=28.95  Aligned_cols=80  Identities=18%  Similarity=0.192  Sum_probs=48.7

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc-----ccCc
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV-----FKQK  120 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-----~~~~  120 (216)
                      +++++|-.|++.|.   ++..++..|. +|++++.+++..+.....+. .+ .++.++.+|+.+.+-....     ....
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-YP-GRHRWVVADLTSEAGREAVLARAREMGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh-cC-CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence            56788888876544   2233455565 89999999877765554442 22 1688889999332211000     0146


Q ss_pred             ccEEEEcCCCC
Q psy17460        121 VDTVIMNPPFG  131 (216)
Q Consensus       121 ~D~vi~npp~~  131 (216)
                      +|.++.+..+.
T Consensus        81 id~lv~~ag~~   91 (263)
T PRK09072         81 INVLINNAGVN   91 (263)
T ss_pred             CCEEEECCCCC
Confidence            89999886654

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=83.59  E-value=0.9  Score=35.42  Aligned_cols=13  Identities=38%  Similarity=0.887  Sum_probs=8.8

Q ss_pred             ccEEEEcCCCCCC
Q psy17460        121 VDTVIMNPPFGTR  133 (216)
Q Consensus       121 ~D~vi~npp~~~~  133 (216)
                      +|+|+.+|||...
T Consensus         1 VdliitDPPY~~~   13 (231)
T PF01555_consen    1 VDLIITDPPYNIG   13 (231)
T ss_dssp             EEEEEE---TSSS
T ss_pred             CCEEEECCCCCCC
Confidence            5899999999987

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=83.49  E-value=6.5  Score=27.93  Aligned_cols=61  Identities=13%  Similarity=0.168  Sum_probs=42.4

Q ss_pred             EEEEecCCCCH-hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         52 TVLDLGCGSGI-LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        52 ~vlD~g~GtG~-~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      +|.++|.|.=. .+..++++|. .++++|+++.       +..    ..++++..|+  ++.....- +..|+|++-
T Consensus        16 kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~----~g~~~v~DDi--tnP~~~iY-~~A~lIYSi   77 (129)
T COG1255          16 KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP----EGLRFVVDDI--TNPNISIY-EGADLIYSI   77 (129)
T ss_pred             cEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc----ccceEEEccC--CCccHHHh-hCccceeec
Confidence            89999988665 4566778885 7999999984       222    2688999999  65433211 456777753

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=83.27  E-value=7.6  Score=30.82  Aligned_cols=80  Identities=14%  Similarity=0.102  Sum_probs=49.5

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      +++++|-.|+. |.++..    +++.|. +|+.++.+++..+.+...+...+. ++.++.+|+.+.+.....      ..
T Consensus         6 ~~~~vlItGas-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          6 NGKTAVVTGAA-SGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            57788877664 444433    444555 899999998777666655544443 578899998332221110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      .+.|.||.+....
T Consensus        83 ~~~d~vi~~ag~~   95 (262)
T PRK13394         83 GSVDILVSNAGIQ   95 (262)
T ss_pred             CCCCEEEECCccC
Confidence            3589999887654

>PRK06197 short chain dehydrogenase; Provisional

Probab=83.24  E-value=9  Score=31.55  Aligned_cols=81  Identities=10%  Similarity=0.027  Sum_probs=48.4

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHh-CCCceEEEEecccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEF-EITNCDAILFEINEKSLDSS------V  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~------~  116 (216)
                      ..+++||-.|+. |.++..    +++.|. +|+.++.+++..+.+...+... +-.++.++.+|+.+.+-...      .
T Consensus        14 ~~~k~vlItGas-~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   91 (306)
T PRK06197         14 QSGRVAVVTGAN-TGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA   91 (306)
T ss_pred             CCCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            467888887764 444444    444555 8888888877666555544322 11168889999933321111      0


Q ss_pred             ccCcccEEEEcCCC
Q psy17460        117 FKQKVDTVIMNPPF  130 (216)
Q Consensus       117 ~~~~~D~vi~npp~  130 (216)
                      .-+.+|++|.|...
T Consensus        92 ~~~~iD~li~nAg~  105 (306)
T PRK06197         92 AYPRIDLLINNAGV  105 (306)
T ss_pred             hCCCCCEEEECCcc
Confidence            11468999988754

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=83.14  E-value=6.5  Score=28.45  Aligned_cols=77  Identities=27%  Similarity=0.314  Sum_probs=47.2

Q ss_pred             CCCCCCEEEEecCCCCHhH--HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILT--FGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~--~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...++++++-+|+|--.-+  ..++..|..+++.+..+.+-.+.....+   +-.+++++..+-  ..  ...  ..+|+
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~~~~~~~~~~~--~~--~~~--~~~Di   78 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GGVNIEAIPLED--LE--EAL--QEADI   78 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TGCSEEEEEGGG--HC--HHH--HTESE
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---CccccceeeHHH--HH--HHH--hhCCe
Confidence            3458899999999844433  3355667788999999876554444433   211344444333  33  111  58999


Q ss_pred             EEEcCCCC
Q psy17460        124 VIMNPPFG  131 (216)
Q Consensus       124 vi~npp~~  131 (216)
                      ||...|-.
T Consensus        79 vI~aT~~~   86 (135)
T PF01488_consen   79 VINATPSG   86 (135)
T ss_dssp             EEE-SSTT
T ss_pred             EEEecCCC
Confidence            99887755

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=82.71  E-value=8.9  Score=35.41  Aligned_cols=69  Identities=14%  Similarity=0.046  Sum_probs=44.8

Q ss_pred             CEEEEecCCCCH-hHHH-HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         51 KTVLDLGCGSGI-LTFG-SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        51 ~~vlD~g~GtG~-~~~~-~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ..|+=+|||.=. .... +.+.+ ..++.+|.|++.++.+++.       ...++.||+.+.+......-+..|.+++.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDHDPDHIETLRKF-------GMKVFYGDATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHhc-------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence            467777777433 2222 33334 3799999999998887652       46799999954444433333578888863

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=82.43  E-value=19  Score=28.63  Aligned_cols=81  Identities=15%  Similarity=0.083  Sum_probs=47.1

Q ss_pred             CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..+++||-.|++.|.-   +..+++.|. +|+.++.+.+ .+.+...+...+- ++.++.+|+.+.+-....      .-
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~   89 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTN-WDETRRLIEKEGR-KVTFVQVDLTKPESAEKVVKEALEEF   89 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcH-HHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3678899999876542   233455565 7888887743 3333333333232 688899999332221110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|.+|.+....
T Consensus        90 g~id~li~~ag~~  102 (258)
T PRK06935         90 GKIDILVNNAGTI  102 (258)
T ss_pred             CCCCEEEECCCCC
Confidence            3689999887654

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=82.39  E-value=4.6  Score=34.88  Aligned_cols=45  Identities=13%  Similarity=0.114  Sum_probs=33.3

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhh
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKN   93 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~   93 (216)
                      .++++||-|.+| |..++..+..++.+|++||+||.+..+.+-.+.
T Consensus        34 ~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   34 GPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             CCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence            578889998765 555555556667899999999988877665543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=82.27  E-value=5.7  Score=33.76  Aligned_cols=77  Identities=18%  Similarity=0.148  Sum_probs=45.1

Q ss_pred             CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCCh---------------------HHHHHHHHhhhHhCCC-ceEEEE
Q psy17460         49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECDK---------------------EILDIFIDNKNEFEIT-NCDAIL  104 (216)
Q Consensus        49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~~---------------------~~~~~~~~~~~~~~~~-~v~~~~  104 (216)
                      ...+|+-+||| .|+. +..++..|-.+++.+|-+.                     .-.+.+.+.++...-. +++.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~  102 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV  102 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            56789999998 4553 3556677778999999873                     1223344444432211 466666


Q ss_pred             ecccccccccccccCcccEEEEc
Q psy17460        105 FEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus       105 ~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++  ..-.....-..+|+|+..
T Consensus       103 ~~~--~~~~~~~~~~~~DlVid~  123 (339)
T PRK07688        103 QDV--TAEELEELVTGVDLIIDA  123 (339)
T ss_pred             ccC--CHHHHHHHHcCCCEEEEc
Confidence            666  321111111578999864

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=82.10  E-value=6.9  Score=31.26  Aligned_cols=76  Identities=17%  Similarity=0.181  Sum_probs=46.6

Q ss_pred             EEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccCccc
Q psy17460         52 TVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQKVD  122 (216)
Q Consensus        52 ~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~~D  122 (216)
                      ++|-.|++.|.   ++..+++.|. +|+.++.+++.++.+...+...+  ++.++.+|+.+.+-...      ..-+.+|
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence            57777766544   2233445565 89999999887776666554433  57788999832221100      0114789


Q ss_pred             EEEEcCCC
Q psy17460        123 TVIMNPPF  130 (216)
Q Consensus       123 ~vi~npp~  130 (216)
                      ++|.|.-.
T Consensus        79 ~li~naG~   86 (259)
T PRK08340         79 ALVWNAGN   86 (259)
T ss_pred             EEEECCCC
Confidence            99988654

>PRK06949 short chain dehydrogenase; Provisional

Probab=81.81  E-value=8.6  Score=30.48  Aligned_cols=80  Identities=15%  Similarity=0.083  Sum_probs=49.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..+++|+-.| |+|.++..++    ..|. +|++++.+++.++.....+...+. ++.++.+|+.+.+-....      .
T Consensus         7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~   83 (258)
T PRK06949          7 LEGKVALVTG-ASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETE   83 (258)
T ss_pred             CCCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHh
Confidence            3678888888 4455554433    3454 899999998877666555543332 678899998322211000      1


Q ss_pred             cCcccEEEEcCCC
Q psy17460        118 KQKVDTVIMNPPF  130 (216)
Q Consensus       118 ~~~~D~vi~npp~  130 (216)
                      .+.+|.++.+...
T Consensus        84 ~~~~d~li~~ag~   96 (258)
T PRK06949         84 AGTIDILVNNSGV   96 (258)
T ss_pred             cCCCCEEEECCCC
Confidence            1368999988764

>PRK07831 short chain dehydrogenase; Provisional

Probab=81.79  E-value=11  Score=29.99  Aligned_cols=82  Identities=16%  Similarity=0.217  Sum_probs=49.8

Q ss_pred             CCCEEEEecCC-CC--Hh-HHHHhHcCCCEEEEEeCChHHHHHHHHhhhH-hCCCceEEEEecccccccccc------cc
Q psy17460         49 DGKTVLDLGCG-SG--IL-TFGSILLGADFCFALECDKEILDIFIDNKNE-FEITNCDAILFEINEKSLDSS------VF  117 (216)
Q Consensus        49 ~~~~vlD~g~G-tG--~~-~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~------~~  117 (216)
                      +++++|-.|++ .|  .. +..++..|. +|+.+|.+++.++.....+.. .+-.++.++.+|+.+.+-...      ..
T Consensus        16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   94 (262)
T PRK07831         16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER   94 (262)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            56788888863 33  32 233555565 799999988777666655543 232267888999832221110      01


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      .+..|++|.|.-+.
T Consensus        95 ~g~id~li~~ag~~  108 (262)
T PRK07831         95 LGRLDVLVNNAGLG  108 (262)
T ss_pred             cCCCCEEEECCCCC
Confidence            14689999887653

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=81.68  E-value=4.8  Score=32.01  Aligned_cols=78  Identities=13%  Similarity=0.069  Sum_probs=45.1

Q ss_pred             CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCC-------------------hHHHHHHHHhhhHhCCC-ceEEEEec
Q psy17460         49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECD-------------------KEILDIFIDNKNEFEIT-NCDAILFE  106 (216)
Q Consensus        49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~-------------------~~~~~~~~~~~~~~~~~-~v~~~~~d  106 (216)
                      ...+|+-+||| .|+. +..++..|..+++.+|-+                   ..-.+.+.+.++...-. +++.+...
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~   99 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER   99 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence            56789999998 5664 355777787888888644                   33344555555443321 45556555


Q ss_pred             ccccccccccccCcccEEEEcC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      +...+...  .-..+|+||+..
T Consensus       100 i~~~~~~~--~~~~~DvVi~~~  119 (228)
T cd00757         100 LDAENAEE--LIAGYDLVLDCT  119 (228)
T ss_pred             eCHHHHHH--HHhCCCEEEEcC
Confidence            51111111  114699999754

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07576 short chain dehydrogenase; Provisional

Probab=81.62  E-value=8.6  Score=30.89  Aligned_cols=76  Identities=13%  Similarity=0.145  Sum_probs=47.1

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc--cc---c---
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD--SS---V---  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~---~---  116 (216)
                      +++++|-.|+ +|.++..    ++..|. +|++++.+++..+.....+...+. ++.++.+|+  .+..  ..   .   
T Consensus         8 ~~k~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv--~~~~~i~~~~~~~~~   82 (264)
T PRK07576          8 AGKNVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADV--RDYAAVEAAFAQIAD   82 (264)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCC--CCHHHHHHHHHHHHH
Confidence            6788888885 4444443    344454 899999988776655444443332 567888898  4321  00   0   


Q ss_pred             ccCcccEEEEcCC
Q psy17460        117 FKQKVDTVIMNPP  129 (216)
Q Consensus       117 ~~~~~D~vi~npp  129 (216)
                      .-..+|.+|.|..
T Consensus        83 ~~~~iD~vi~~ag   95 (264)
T PRK07576         83 EFGPIDVLVSGAA   95 (264)
T ss_pred             HcCCCCEEEECCC
Confidence            1136899998864

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=81.48  E-value=8.9  Score=30.54  Aligned_cols=80  Identities=16%  Similarity=0.198  Sum_probs=45.8

Q ss_pred             CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .+++++|-.|++.|.-   +..+++.|. +|+.++.+..  +.....+...+. ++.++.+|+.+.+-....      .-
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGR-KFHFITADLIQQKDIDSIVSQAVEVM   81 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCC-eEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence            3678999999766652   233455565 7888776532  222223333332 688889999333211110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|+++.|.-..
T Consensus        82 g~iD~lv~~ag~~   94 (251)
T PRK12481         82 GHIDILINNAGII   94 (251)
T ss_pred             CCCCEEEECCCcC
Confidence            4689999887543

>PRK05650 short chain dehydrogenase; Provisional

Probab=81.40  E-value=9.4  Score=30.69  Aligned_cols=75  Identities=11%  Similarity=-0.042  Sum_probs=46.2

Q ss_pred             EEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--cc------ccC
Q psy17460         52 TVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--SV------FKQ  119 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~------~~~  119 (216)
                      +||-.|+ +|.++..    +++.|. +|+.++.+++..+.+...+...+. ++.++.+|+  .+...  ..      ..+
T Consensus         2 ~vlVtGa-sggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~--~~~~~~~~~~~~i~~~~~   76 (270)
T PRK05650          2 RVMITGA-ASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGG-DGFYQRCDV--RDYSQLTALAQACEEKWG   76 (270)
T ss_pred             EEEEecC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccC--CCHHHHHHHHHHHHHHcC
Confidence            5676675 4444433    444454 899999988776666555544433 678889998  44221  10      114


Q ss_pred             cccEEEEcCCCC
Q psy17460        120 KVDTVIMNPPFG  131 (216)
Q Consensus       120 ~~D~vi~npp~~  131 (216)
                      .+|.+|.|....
T Consensus        77 ~id~lI~~ag~~   88 (270)
T PRK05650         77 GIDVIVNNAGVA   88 (270)
T ss_pred             CCCEEEECCCCC
Confidence            689999886544

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=81.33  E-value=9.8  Score=31.48  Aligned_cols=82  Identities=17%  Similarity=0.193  Sum_probs=48.1

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCCh-HHHHHHHHhhhHhCCCceEEEEeccccccccccc-----cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDK-EILDIFIDNKNEFEITNCDAILFEINEKSLDSSV-----FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~-~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-----~~  118 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+..|.+. ...+.....+...+. ++.++.+|+.+.+-....     .-
T Consensus        10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dv~d~~~~~~~~~~~~~~   87 (306)
T PRK07792         10 LSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGA-KAVAVAGDISQRATADELVATAVGL   87 (306)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            468899988887665   2344556666 788888743 333333333333332 678899998332111100     01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        88 g~iD~li~nAG~~  100 (306)
T PRK07792         88 GGLDIVVNNAGIT  100 (306)
T ss_pred             CCCCEEEECCCCC
Confidence            4689999886543

>KOG1205|consensus

Probab=81.27  E-value=8.5  Score=31.83  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc------ccc
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+++|+=.||.+|.   ++.++++.|. +++-+-...+.++...+.+...+-. ++..+.+|+.+.+-...      ..-
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            68999999999987   4566777776 6666666666666664444444333 49999999944432211      122


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      +..|+.+.|.-+...
T Consensus        90 g~vDvLVNNAG~~~~  104 (282)
T KOG1205|consen   90 GRVDVLVNNAGISLV  104 (282)
T ss_pred             CCCCEEEecCccccc
Confidence            678999999776654

>PLN02253 xanthoxin dehydrogenase

Probab=81.23  E-value=9.5  Score=30.81  Aligned_cols=78  Identities=15%  Similarity=0.055  Sum_probs=46.4

Q ss_pred             CCCEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .++++|-.|++ |.++..+    ++.|. +|+.++.+++..+.....+.. + .++.++.+|+.+.+-....      .-
T Consensus        17 ~~k~~lItGas-~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Dl~d~~~~~~~~~~~~~~~   92 (280)
T PLN02253         17 LGKVALVTGGA-TGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGG-E-PNVCFFHCDVTVEDDVSRAVDFTVDKF   92 (280)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcC-C-CceEEEEeecCCHHHHHHHHHHHHHHh
Confidence            57788888854 4445443    34454 899999887665544433321 1 2688999999332211110      01


Q ss_pred             CcccEEEEcCCC
Q psy17460        119 QKVDTVIMNPPF  130 (216)
Q Consensus       119 ~~~D~vi~npp~  130 (216)
                      +..|.+|.|...
T Consensus        93 g~id~li~~Ag~  104 (280)
T PLN02253         93 GTLDIMVNNAGL  104 (280)
T ss_pred             CCCCEEEECCCc
Confidence            368999987644

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=81.15  E-value=27  Score=28.56  Aligned_cols=115  Identities=16%  Similarity=0.105  Sum_probs=61.1

Q ss_pred             CCCCCEEEEecCCCCHhH--HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         47 DIDGKTVLDLGCGSGILT--FGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~--~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ...+++|+-+|+|--..+  ..++..|..+|+.++.+++..+.....+....  .+.+ ..+.  .+..     ..+|+|
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~-~~~~--~~~~-----~~~Div  189 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAEL-DLEL--QEEL-----ADFDLI  189 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceee-cccc--hhcc-----ccCCEE
Confidence            346789999998632222  22444565689999999876655544443211  1232 1121  1111     578999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460        125 IMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus       125 i~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~  171 (216)
                      |..-|-+..............+.....+|.+.+......+++.+++.
T Consensus       190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~  236 (278)
T PRK00258        190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQ  236 (278)
T ss_pred             EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHC
Confidence            98766654311000001112233333377776665566777777665

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=81.14  E-value=9.3  Score=29.05  Aligned_cols=31  Identities=19%  Similarity=0.013  Sum_probs=22.5

Q ss_pred             EEEEecCC-CCHh-HHHHhHcCCCEEEEEeCCh
Q psy17460         52 TVLDLGCG-SGIL-TFGSILLGADFCFALECDK   82 (216)
Q Consensus        52 ~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~~   82 (216)
                      +|+-+||| .|+. +..++..|..+++.+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            37788988 4664 4456677778899999774

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.97  E-value=13  Score=29.05  Aligned_cols=78  Identities=14%  Similarity=0.129  Sum_probs=49.0

Q ss_pred             CCCEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--cc------
Q psy17460         49 DGKTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--SV------  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~------  116 (216)
                      .+++++-.|+ +|.++..+    +..|. +|+.++.++...+.....+...+. ++.++.+|+  .+...  ..      
T Consensus         6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~--~~~~~~~~~~~~~~~   80 (239)
T PRK07666          6 QGKNALITGA-GRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGV-KVVIATADV--SDYEEVTAAIEQLKN   80 (239)
T ss_pred             CCCEEEEEcC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECCC--CCHHHHHHHHHHHHH
Confidence            4677888885 56666544    34465 899999988766554444443332 688889998  44321  00      


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      ..+..|.||.+....
T Consensus        81 ~~~~id~vi~~ag~~   95 (239)
T PRK07666         81 ELGSIDILINNAGIS   95 (239)
T ss_pred             HcCCccEEEEcCccc
Confidence            113689999887543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=80.91  E-value=7.5  Score=33.99  Aligned_cols=73  Identities=16%  Similarity=0.047  Sum_probs=46.7

Q ss_pred             CCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ....|+=+|+|  .++..++    ..+ ..++.+|.+++.++.++....     ++.++.||+.+.+.......+.+|.|
T Consensus       230 ~~~~iiIiG~G--~~g~~l~~~L~~~~-~~v~vid~~~~~~~~~~~~~~-----~~~~i~gd~~~~~~L~~~~~~~a~~v  301 (453)
T PRK09496        230 PVKRVMIVGGG--NIGYYLAKLLEKEG-YSVKLIERDPERAEELAEELP-----NTLVLHGDGTDQELLEEEGIDEADAF  301 (453)
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHCC-----CCeEEECCCCCHHHHHhcCCccCCEE
Confidence            45678888875  4443333    233 489999999998877665431     56789999943333222222678998


Q ss_pred             EEcCC
Q psy17460        125 IMNPP  129 (216)
Q Consensus       125 i~npp  129 (216)
                      ++..+
T Consensus       302 i~~~~  306 (453)
T PRK09496        302 IALTN  306 (453)
T ss_pred             EECCC
Confidence            87554

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=80.85  E-value=8.9  Score=34.83  Aligned_cols=66  Identities=12%  Similarity=0.048  Sum_probs=41.9

Q ss_pred             EEEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         52 TVLDLGCGSGILTFGSIL----LGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++=+|||  ..+..+++    .+ ..++.+|.|++.++.+++.       ....+.||+.+.+......-+..|.+++.
T Consensus       419 hiiI~G~G--~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~~-------g~~~i~GD~~~~~~L~~a~i~~a~~viv~  488 (558)
T PRK10669        419 HALLVGYG--RVGSLLGEKLLAAG-IPLVVIETSRTRVDELRER-------GIRAVLGNAANEEIMQLAHLDCARWLLLT  488 (558)
T ss_pred             CEEEECCC--hHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHC-------CCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence            45555655  44433333    34 4799999999988877642       57899999944333322223678877763

>PRK06138 short chain dehydrogenase; Provisional

Probab=80.85  E-value=23  Score=27.83  Aligned_cols=79  Identities=15%  Similarity=0.099  Sum_probs=47.9

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      +++++|-.||. |.++..    +++.|. +|++++.+.+........+. .+. ++.++.+|+.+.+-....      .-
T Consensus         4 ~~k~~lItG~s-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-~~~-~~~~~~~D~~~~~~~~~~~~~i~~~~   79 (252)
T PRK06138          4 AGRVAIVTGAG-SGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIA-AGG-RAFARQGDVGSAEAVEALVDFVAARW   79 (252)
T ss_pred             CCcEEEEeCCC-chHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHh-cCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            57788888875 444333    444554 89999988776655554443 222 688999999322211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      ..+|.|+.+....
T Consensus        80 ~~id~vi~~ag~~   92 (252)
T PRK06138         80 GRLDVLVNNAGFG   92 (252)
T ss_pred             CCCCEEEECCCCC
Confidence            4789999877654

>PRK06172 short chain dehydrogenase; Provisional

Probab=80.71  E-value=13  Score=29.36  Aligned_cols=79  Identities=15%  Similarity=0.050  Sum_probs=50.1

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      ++++++-.|++.|. +..    +++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-...      ..-
T Consensus         6 ~~k~ilItGas~~i-G~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~   82 (253)
T PRK06172          6 SGKVALVTGGAAGI-GRATALAFAREGA-KVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAEVKALVEQTIAAY   82 (253)
T ss_pred             CCCEEEEeCCCchH-HHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            57889999875443 333    444554 899999998777666655544443 68899999933221111      011


Q ss_pred             CcccEEEEcCCC
Q psy17460        119 QKVDTVIMNPPF  130 (216)
Q Consensus       119 ~~~D~vi~npp~  130 (216)
                      +++|.++.|.-+
T Consensus        83 g~id~li~~ag~   94 (253)
T PRK06172         83 GRLDYAFNNAGI   94 (253)
T ss_pred             CCCCEEEECCCC
Confidence            467999988755

>KOG2782|consensus

Probab=80.38  E-value=1.3  Score=35.24  Aligned_cols=94  Identities=17%  Similarity=0.203  Sum_probs=63.0

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-
Q psy17460         38 LHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-  115 (216)
Q Consensus        38 ~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-  115 (216)
                      +..+...+.+.+|...+|..-|.|.-+..+.+.-+ .++++.|.+|-+.++|+......-.+.+..+.+++  ...+.- 
T Consensus        32 ~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~F--s~~~~l~  109 (303)
T KOG2782|consen   32 LDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNF--SYIKSLI  109 (303)
T ss_pred             hhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhh--HHHHHHH
Confidence            33344333445899999999999999988887755 78999999999999888877532222444555665  332211 


Q ss_pred             ----cccCcccEEEEcCCCCCC
Q psy17460        116 ----VFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       116 ----~~~~~~D~vi~npp~~~~  133 (216)
                          ..+..+|-|+++.-...+
T Consensus       110 ~~~gl~~~~vDGiLmDlGcSSM  131 (303)
T KOG2782|consen  110 ADTGLLDVGVDGILMDLGCSSM  131 (303)
T ss_pred             HHhCCCcCCcceEEeecCcccc
Confidence                122678999886554443

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=80.29  E-value=14  Score=29.25  Aligned_cols=81  Identities=17%  Similarity=0.225  Sum_probs=50.7

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      .++++++-.|++.| ++..    +++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus         9 ~~~k~ilItGas~~-IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124          9 LAGQVALVTGSARG-LGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHh
Confidence            46888998886544 4433    444565 899999998776665555544443 588899998332211110      1


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+++|.+|.|.-..
T Consensus        86 ~~~id~vi~~ag~~   99 (256)
T PRK06124         86 HGRLDILVNNVGAR   99 (256)
T ss_pred             cCCCCEEEECCCCC
Confidence            14679999886543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=80.21  E-value=7.7  Score=30.86  Aligned_cols=69  Identities=12%  Similarity=0.179  Sum_probs=44.2

Q ss_pred             EEEEecCCCCH--hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         52 TVLDLGCGSGI--LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        52 ~vlD~g~GtG~--~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      +++=+|||.=.  ++..+...|. .|+.+|.+++.++.....-.     .+..+.+|..+.+...+..-..+|+++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~-----~~~~v~gd~t~~~~L~~agi~~aD~vva   72 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADEL-----DTHVVIGDATDEDVLEEAGIDDADAVVA   72 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhc-----ceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence            56677877433  2333555554 89999999988776333211     5789999994444443333367899886

>PRK07791 short chain dehydrogenase; Provisional

Probab=80.12  E-value=16  Score=29.81  Aligned_cols=82  Identities=17%  Similarity=0.101  Sum_probs=48.2

Q ss_pred             CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCCh---------HHHHHHHHhhhHhCCCceEEEEecccccccccc
Q psy17460         48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDK---------EILDIFIDNKNEFEITNCDAILFEINEKSLDSS  115 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~---------~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  115 (216)
                      .+++++|-.|++.|.-   +..+++.|. +|+.++.+.         +..+.+...+...+. ++.++.+|+.+.+-...
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~   81 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-EAVANGDDIADWDGAAN   81 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCC-ceEEEeCCCCCHHHHHH
Confidence            3678899999877652   233555665 788887764         444444444433333 57788889833221100


Q ss_pred             ------cccCcccEEEEcCCCC
Q psy17460        116 ------VFKQKVDTVIMNPPFG  131 (216)
Q Consensus       116 ------~~~~~~D~vi~npp~~  131 (216)
                            ..-+.+|.+|.|.-..
T Consensus        82 ~~~~~~~~~g~id~lv~nAG~~  103 (286)
T PRK07791         82 LVDAAVETFGGLDVLVNNAGIL  103 (286)
T ss_pred             HHHHHHHhcCCCCEEEECCCCC
Confidence                  0115789999987653

>PRK05872 short chain dehydrogenase; Provisional

Probab=80.08  E-value=11  Score=30.97  Aligned_cols=81  Identities=16%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++.++.....+.. +. .+..+.+|+.+.+-...      ..-
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-DD-RVLTVVADVTDLAAMQAAAEEAVERF   83 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-CC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            467889988866544   2233445565 899999998776655444332 21 45666788832221100      011


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        84 g~id~vI~nAG~~   96 (296)
T PRK05872         84 GGIDVVVANAGIA   96 (296)
T ss_pred             CCCCEEEECCCcC
Confidence            4689999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
1wy7_A	207	Crystal Structure Of A Putative Rna Methyltransfera		6e-28
1ne2_A	200	Crystal Structure Of Thermoplasma Acidophilum 1320		3e-16
3r0q_C	376	A Uniquely Open Conformation Revealed In The Crysta		1e-04
2y1w_A	348	Crystal Structure Of Coactivator Associated Arginin		3e-04
3b3f_A	341	The 2.2 A Crystal Structure Of The Catalytic Domain		3e-04
4ikp_A	341	Crystal Structure Of Coactivator-associated Arginin		3e-04
2v74_B	346	Crystal Structure Of Coactivator-Associated Arginin		3e-04
3b3j_A	480	The 2.55 A Crystal Structure Of The Apo Catalytic D		5e-04

>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase Ph1948 From Pyrococcus Horikoshii Length = 207

Iteration: 1
 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 108/194 (55%), Gaps = 13/194 (6%)
Query: 16  NFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFC 75
            F NPKV LEQY TP + A+ +L  +  +  DI+GK V DLG G+G+L++G++LLGA   
Sbjct: 17  GFKNPKVWLEQYRTPGNAASELLW-LAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEV 75
Query: 76  FALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNC 135
             +E DKE +D+ I+N  EF+       + +++E       F  +VD VI NPPFG++  
Sbjct: 76  ICVEVDKEAVDVLIENLGEFK-GKFKVFIGDVSE-------FNSRVDIVIXNPPFGSQRK 127
Query: 136 GIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM--KYDLNQSYKF 193
             D  F+  A +IS VVYS+H    +  + + I+ F       V   +  K ++   + F
Sbjct: 128 HADRPFLLKAFEISDVVYSIH--LAKPEVRRFIEKFSWEHGFVVTHRLTTKIEIPLQFFF 185
Query: 194 HKKSLHDIEVDLLR 207
           H+K L  I VD+ R
Sbjct: 186 HRKKLERITVDIYR 199

>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320 (Apc5513) Length = 200

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 8   QYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGS 67
           Q LQQ   NF N   +LEQY T    AA  L  I N+ N I G++V+D G G+GIL  GS
Sbjct: 15  QKLQQQG-NFKN---YLEQYPTDASTAAYFLIEIYNDGN-IGGRSVIDAGTGNGILACGS 69
Query: 68  ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127
            LLGA+   A + D + +        E    NC  + F +     D S    K DT I N
Sbjct: 70  YLLGAESVTAFDIDPDAI--------ETAKRNCGGVNFXV----ADVSEISGKYDTWIXN 117
Query: 128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNV 174
           PPFG+     D AF+  A + S  +YS+     R+ + ++  A  +V
Sbjct: 118 PPFGSVVKHSDRAFIDKAFETSXWIYSIGNAKARDFLRREFSARGDV 164

>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 44  NYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF-EITNCDA 102
           N +  +GKTVLD+G GSGIL   S   GA   +A+E  K       D+     +  N D 
Sbjct: 58  NKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK-----MADHARALVKANNLDH 112
Query: 103 ILFEINEKSLDSSVFKQKVDTVI 125
           I+ E+ E S++     +KVD +I
Sbjct: 113 IV-EVIEGSVEDISLPEKVDVII 134

>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC 80
           T    I  N+ D   K VLD+GCGSGIL+F +   GA   +A+E 
Sbjct: 36 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA 81

>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC 80
           T    I  N+ D   K VLD+GCGSGIL+F +   GA   +A+E 
Sbjct: 32 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA 77

>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC 80
           T    I  N+ D   K VLD+GCGSGIL+F +   GA   +A+E 
Sbjct: 31 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA 76

>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC 80
           T    I  N+ D   K VLD+GCGSGIL+F +   GA   +A+E 
Sbjct: 27 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA 72

>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 35  ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD 81
            T    I  N+ D   K VLD+GCGSGIL+F +   GA   +A+E  
Sbjct: 144 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAS 190

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	6e-50
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	6e-46
2qm3_A	373	Predicted methyltransferase; putative methyltransf	1e-07
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	4e-07
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	6e-07
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	1e-06
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	1e-06
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	2e-06
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	4e-06
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	4e-06
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	8e-06
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	8e-06
3lpm_A	259	Putative methyltransferase; structural genomics, p	9e-06
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	1e-05
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	1e-05
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	1e-05
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	2e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-05
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	2e-05
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	4e-05
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	6e-05
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	6e-05
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	6e-05
2esr_A	177	Methyltransferase; structural genomics, hypothetic	6e-05
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	7e-05
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	7e-05
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	7e-05
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	1e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-04
3ege_A	261	Putative methyltransferase from antibiotic biosyn	5e-04
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	5e-04
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	5e-04
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	6e-04
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	7e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	8e-04

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score =  160 bits (406), Expect = 6e-50
 Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 17/208 (8%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
                +E  LQ+L     N K +LEQY T    AA  L  I N+  +I G++V+D G G+
Sbjct: 5   GIKNDLEIRLQKLQ-QQGNFKNYLEQYPTDASTAAYFLIEIYNDG-NIGGRSVIDAGTGN 62

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           GIL  GS LLGA+   A + D + ++    N         D                  K
Sbjct: 63  GILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS------------GK 110

Query: 121 VDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVI 180
            DT IMNPPFG+     D AF+  A + S  +YS+     R+ + ++  A  +V      
Sbjct: 111 YDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRREFSARGDVF---RE 167

Query: 181 AEMKYDLNQSYKFHKKSLHDIEVDLLRI 208
            ++   + + Y+ H      IE  +  +
Sbjct: 168 EKVYITVPRIYRHHSYDRARIEAVIFGV 195

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score =  150 bits (380), Expect = 6e-46
 Identities = 77/210 (36%), Positives = 115/210 (54%), Gaps = 14/210 (6%)

Query: 1   MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
            + K +   L +L   F NPKV LEQY TP + A+ +L    +   DI+GK V DLG G+
Sbjct: 3   TRKKELAIALSKLK-GFKNPKVWLEQYRTPGNAASELLWLAYS-LGDIEGKVVADLGAGT 60

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
           G+L++G++LLGA     +E DKE +D+ I+N  EF+       + +++E       F  +
Sbjct: 61  GVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSE-------FNSR 112

Query: 121 VDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLH--KTSTRESILKKIQAFKNVEQVD 178
           VD VIMNPPFG++    D  F+  A +IS VVYS+H  K   R  I K   ++++   V 
Sbjct: 113 VDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKF--SWEHGFVVT 170

Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLRI 208
                K ++   + FH+K L  I VD+ R 
Sbjct: 171 HRLTTKIEIPLQFFFHRKKLERITVDIYRF 200

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Length = 373

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 32/194 (16%), Positives = 64/194 (32%), Gaps = 13/194 (6%)

Query: 2   KLKHIEQYLQQLTFNFSNPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
               + +  +++  +   P    +Q Y TP    A ++        D++ K +  LG   
Sbjct: 126 AFADLLEQFREIVKDRPEPLHEFDQAYVTPETTVARVILMHTRG--DLENKDIFVLGDDD 183

Query: 61  GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
                  +         L+ D+ +        NE    + +   F++ +   D      K
Sbjct: 184 LTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY--ALHK 241

Query: 121 VDTVIMNPPFGTRNCGIDLAFVQYAADISK-----VVYSLHKTSTRESILKKIQAFKNVE 175
            DT I +PP       I   FV       K       + + +  +     ++IQ     E
Sbjct: 242 FDTFITDPPETLE--AIRA-FVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNE 298

Query: 176 QVDVIAEMKYDLNQ 189
              VI ++  + N+
Sbjct: 299 FNVVITDIIRNFNE 312

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 46  NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF 105
             +   TV D+G GSGIL   +  LGA    A +   E +    +N     +     I  
Sbjct: 57  AMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEEN---AALNGIYDIAL 113

Query: 106 EINEKSLDSSVFKQKVDTVIMN 127
           +    SL + V   K D ++ N
Sbjct: 114 QKT--SLLADV-DGKFDLIVAN 132

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340

 Score = 48.1 bits (114), Expect = 6e-07
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 41  IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEI---LDIFIDNKNEFEI 97
           I  N +    K VLD+GCG+GIL+  +   GA     ++  + +   +DI   NK E  I
Sbjct: 56  IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTI 115

Query: 98  TNCDAILFEINEKSLDSSVFKQKVDTVI 125
           T        I  K  +  +  +KVD +I
Sbjct: 116 T-------LIKGKIEEVHLPVEKVDVII 136

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 46  NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF 105
           +   G  VLDLG GSG+L   +  LG      ++ D  +L     N    +         
Sbjct: 117 HLRPGDKVLDLGTGSGVLAIAAEKLGGK-ALGVDIDPMVLPQAEAN---AKRNGVRPRFL 172

Query: 106 EINEKSLDSSVFKQKVDTVIMN 127
           E +   L++++     D ++ N
Sbjct: 173 EGS---LEAALPFGPFDLLVAN 191

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 41  IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEI---LDIFIDNKNEFEI 97
           I  N +    K VLD+GCG+GIL+  +   GA     ++    I    ++   N    +I
Sbjct: 30  IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKI 89

Query: 98  TNCDAILFEINEKSLDSSVFKQKVDTVI 125
           T        +  K  D  +   KVD +I
Sbjct: 90  TL-------LRGKLEDVHLPFPKVDIII 110

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 18/94 (19%)

Query: 50  GKTVLDLGCGSGILTFGSILLGADF----CFALECDKEILDIFIDN---------KNEFE 96
              + DLG G+G      + + A          E  +E+ +    +             E
Sbjct: 37  ACRIADLGAGAGAA---GMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE 93

Query: 97  ITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF 130
           +   D  +    +  +++ +  +    VIMNPP+
Sbjct: 94  VLEAD--VTLRAKARVEAGLPDEHFHHVIMNPPY 125

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 41  IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD---KEILDIFIDNKNEFEI 97
           + +N +    K VLD+G G+GIL   +   GA     +EC       + I   NK +  +
Sbjct: 58  MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVV 117

Query: 98  TNCDAILFEINEKSLDSSVFKQKVDTVI 125
           T        I  K  +  +  +KVD +I
Sbjct: 118 T-------IIKGKVEEVELPVEKVDIII 138

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 36/146 (24%)

Query: 50  GKTVLDLGCGSGILTFGSILLGADF---------CFALECDKEILDIFIDNKNEFEITNC 100
              +LDLGCG G++    I L  +            A++  KE       N     + N 
Sbjct: 53  DDDILDLGCGYGVI---GIALADEVKSTTMADINRRAIKLAKE-------NIKLNNLDNY 102

Query: 101 DAILFEINEKSLDSSVFKQKVDTVIMNPPF--GTRNCGIDLAFVQYAADISK------VV 152
           D  +   +   L  +V  +K + +I NPP   G     +    ++   ++ K      VV
Sbjct: 103 DIRVVHSD---LYENVKDRKYNKIITNPPIRAGKE---VLHRIIEEGKELLKDNGEIWVV 156

Query: 153 YSLHKTSTRESILKKIQA-FKNVEQV 177
               + +  +S+ K ++  F NVE V
Sbjct: 157 IQTKQGA--KSLAKYMKDVFGNVETV 180

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Length = 421

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 16/106 (15%)

Query: 26  QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEIL 85
           +  TPP +   ++           G  VL+  C  G   F      A          EI 
Sbjct: 20  RVETPPEVVDFMVSLA----EAPRGGRVLEPACAHGP--FLRAFREAHGTAYRFVGVEID 73

Query: 86  DIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131
              +D     E    D +L+E  E            D ++ NPP+G
Sbjct: 74  PKALDLPPWAEGILADFLLWEPGEA----------FDLILGNPPYG 109

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score = 44.6 bits (105), Expect = 8e-06
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 41  IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD---KEILDIFIDNKNEFEI 97
           I  N+ D   K VLD+GCGSGIL+F +   GA   +A+E     +    +   N     I
Sbjct: 42  ILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRI 101

Query: 98  TNCDAILFEINEKSLDSSVFKQKVDTVI 125
                    I  K  + S+  ++VD +I
Sbjct: 102 VV-------IPGKVEEVSL-PEQVDIII 121

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 50  GKTVLDLGCGSGILTFGSILLGADF---CFALECDKEILDIFIDNKNEFEITNCDAILFE 106
              ++DL  G+GI+    +LL          +E  + + D+   +    ++ +    + E
Sbjct: 50  KGKIIDLCSGNGII---PLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLED-QIEIIE 105

Query: 107 INEKSLDSSVFKQKVDTVIMNPPF 130
            + K +   + K++ D V  NPP+
Sbjct: 106 YDLKKITDLIPKERADIVTCNPPY 129

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 50  GKTVLDLGCGSGILTFGSILLGADF--CFALECDKEILDIFIDNKNEFEITNCDAILFEI 107
           G  VLD   GSG +   +          +A + D++ L +  +      ++    +  + 
Sbjct: 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADA 263

Query: 108 NEKSLDSSVFKQKVDTVIMNPPFGTR 133
                    F  +VD ++ NPP G R
Sbjct: 264 ----RHLPRFFPEVDRILANPPHGLR 285

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 41  IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD---KEILDIFIDNKNEFEI 97
           I  N+ D   K VLD+GCGSGIL+F +   GA   +A+E     +    +   N     I
Sbjct: 150 ILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRI 209

Query: 98  TNCDAILFEINEKSLDSSVFKQKVDTVI 125
                    I  K  + S+  ++VD +I
Sbjct: 210 VV-------IPGKVEEVSL-PEQVDIII 229

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 41  IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEI---LDIFIDNKNEFEI 97
           +  N +  +GKTVLD+G GSGIL   S   GA   +A+E  K       +   N  +  +
Sbjct: 55  VFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIV 114

Query: 98  T--NCDAILFEINEK 110
                      + EK
Sbjct: 115 EVIEGSVEDISLPEK 129

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 36/169 (21%)

Query: 47  DIDGKTVLDLGCGSGILTFGSILLGADFCF------ALECDKEILDIFIDNKNEFEITNC 100
            + G+ VLDLG G G LT     +GA+         ++   ++ L+     K +   ++ 
Sbjct: 231 GVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEAN-ALKAQALHSDV 289

Query: 101 DAILFEINEKSLDSSVFKQKVDTVIMNPPF---GTRNCGIDLAFVQYAADISK------- 150
           D  L E           + + D ++ NPPF   G     +  AFV  AA   +       
Sbjct: 290 DEALTE-----------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338

Query: 151 VVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLH 199
           V     K    E +L++   F   +    +   +Y +  + K  +   H
Sbjct: 339 VSNPFLK---YEPLLEEK--FGAFQ---TLKVAEYKVLFAEKRGRHHHH 379

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 21/116 (18%)

Query: 17  FSNPKVHLEQYHT-----PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG 71
           FS    + E+Y +     P      I       Y+D + K ++D+GCG G  T       
Sbjct: 4   FSASDFNSERYSSSRPSYPSDFYKMID-----EYHDGERKLLVDVGCGPGTATLQMAQEL 58

Query: 72  ADFC--FALECDKEILDIFIDNKN---------EFEITNCDAILFEINEKSLDSSV 116
             F      +    ++      K           F+I++ D   F   +      +
Sbjct: 59  KPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 48 IDGKTVLDLGCGSGILTFG-SILLGADFCFALECDKEILDIFIDNKNEFEITN 99
            G+ VLDLGC  G LT   +   G      L+ D  ++     N   +    
Sbjct: 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEE 97

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Length = 201

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 46  NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF 105
             I     LD   GSG L F ++   A     LE DK + +    N    + ++  A + 
Sbjct: 50  PYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVI 109

Query: 106 EIN-EKSLDSSVFKQKVDTVIMNPPFG 131
             +    L     +   D V ++PPF 
Sbjct: 110 NQSSLDFLKQPQNQPHFDVVFLDPPFH 136

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 28/138 (20%)

Query: 25  EQYHTPPHL-AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKE 83
           +   +   L AA   H ++    D + KTVLDLGCG G     +   GA     ++  + 
Sbjct: 19  QMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSER 78

Query: 84  ILDI----FIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDL 139
           +L             +E    + I  E               + V+ +           L
Sbjct: 79  MLTEAKRKTTSPVVCYEQKAIEDIAIE-----------PDAYNVVLSS-----------L 116

Query: 140 AFVQYAADISKVVYSLHK 157
           A   Y A    +   ++ 
Sbjct: 117 AL-HYIASFDDICKKVYI 133

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 19/97 (19%)

Query: 43  NNYNDIDGKTVLDLGCGSGILTF--------GSILLGADFCFALECDKE-ILDIFIDNKN 93
            +  +     ++DLGCG+G++            ++   +   A+   +  +     +  +
Sbjct: 216 QHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALD 275

Query: 94  EFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF 130
             E    +A+          S V   + + V+ NPPF
Sbjct: 276 RCEFMINNAL----------SGVEPFRFNAVLCNPPF 302

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Length = 344

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 12/112 (10%)

Query: 26  QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEIL 85
              TP  +   + + ++         ++LD  CG+  L     L        L+ D ++ 
Sbjct: 107 HQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANL-----LTTVINQLELKGDVDVH 161

Query: 86  DIFIDNKNE-FEITNCDAILFEINEK-----SLDSSVFKQKVDTVIMNPPFG 131
              +D  +    +    A L            L + +    VD VI + P G
Sbjct: 162 ASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVD-PVDVVISDLPVG 212

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 Length = 177

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 46  NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN------KNEFEITN 99
              +G  VLDL  GSG L   ++  G      +E +++   I  DN      +N F +  
Sbjct: 28  PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK 87

Query: 100 CDAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131
            +A      E+++D      + D V ++PP+ 
Sbjct: 88  MEA------ERAIDC--LTGRFDLVFLDPPYA 111

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 21/110 (19%)

Query: 31  PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADF-CFALECDKEILDIFI 89
             +A  ++        ++DG +VLD  CGSG +     L         +E  ++ L    
Sbjct: 204 ASIANAMI-----ELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAE 258

Query: 90  DN------KNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133
            N       ++ +    DA            S +   VD  I N P+G +
Sbjct: 259 MNALAAGVLDKIKFIQGDA---------TQLSQYVDSVDFAISNLPYGLK 299

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 50  GKTVLDLGCGSGILTFG-SILLGAD-FCFALECDKEILDIFIDNKNEFEITNCDAILFEI 107
           G TVLD+G G+G      S ++G     +A++  +E+++   +  N+  + N + +  E 
Sbjct: 38  GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE 97

Query: 108 NEKSLDSSVFKQKVDTVIMNPPFGTRN 134
           N+  L  +      D + M   F    
Sbjct: 98  NKIPLPDNTV----DFIFMA--FTFHE 118

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 35/152 (23%)

Query: 43  NNYNDIDGKTVLDLGCGSGILTFGSILL--GADFCF------ALECDKEILDIFIDNKNE 94
           +         VLD+GCG+G+L+                    A+E  +  L     N  E
Sbjct: 190 STLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLA---ANGVE 246

Query: 95  FEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF---GTRNCGIDLAFVQYAADISK- 150
            E+   +             S  K + D +I NPPF      +       ++ A      
Sbjct: 247 GEVFASNVF-----------SEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS 295

Query: 151 -----VVYSLHKTSTRESILKKIQAFKNVEQV 177
                +V +         +L +   F   E +
Sbjct: 296 GGELRIVANAFLPY--PDVLDET--FGFHEVI 323

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 Length = 202

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 13/91 (14%)

Query: 46  NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNC----- 100
             I     LD   GSG L   ++   A     +E D+ +    I N    +  N      
Sbjct: 51  PVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNS 110

Query: 101 DAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131
           +A+ F      L         + V ++PPF 
Sbjct: 111 NAMSF------LAQK--GTPHNIVFVDPPFR 133

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 5/41 (12%), Positives = 8/41 (19%), Gaps = 6/41 (14%)

Query: 25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTF 65
                                      ++D  CG+G  T 
Sbjct: 38 NVERAVVVDLPRFELLFN------PELPLIDFACGNGTQTK 72

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 9/56 (16%)

Query: 28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTF-----GSILLGADFCFAL 78
               +   I++ +        G  + D+G G+G  +      G  +   +    +
Sbjct: 17 VPDIRIVNAIINLLNLP----KGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVM 68

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILT 64
          E+     +L    L T+      ++ K V+DLGCG G L 
Sbjct: 5  EETEKKLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLL 44

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 9/128 (7%)

Query: 6   IEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTF 65
           +   +  L     + +     +  PP L+   +     +  +    T++D GCGSG L  
Sbjct: 679 LNYNILLLGVKGPSEERMEAAFFKPP-LSKQRVEYALKHIRESSASTLVDFGCGSGSLLD 737

Query: 66  GSILLGADF--CFALECDKEILDI----FIDNKNEFEITNCDAILFEINEKSLDSSVFKQ 119
             +           ++   + L           N+       A L++ +    DS     
Sbjct: 738 SLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSR--LH 795

Query: 120 KVDTVIMN 127
            VD     
Sbjct: 796 DVDIGTCL 803

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 47 DIDGKTVLDLGCGSGILT 64
              + VLDLGCG G L 
Sbjct: 50 GRQPERVLDLGCGEGWLL 67

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILT 64
          P  L    ++ +       + + V+DLGCG G L 
Sbjct: 10 PISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLL 44

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 47 DIDGKTVLDLGCGSGILTF 65
          ++ G  ++DLGCG G    
Sbjct: 41 EVGGLRIVDLGCGFGWFCR 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.92
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.91
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.84
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.78
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.76
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.75
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.73
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.71
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.71
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.68
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.68
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.67
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.66
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.66
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.65
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.65
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.65
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.65
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.63
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.63
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.62
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.62
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.62
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.62
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.62
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.62
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.62
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.61
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.61
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.61
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.61
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.61
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.61
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.61
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.61
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.61
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.61
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.61
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.6
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.6
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.59
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.58
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.58
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.58
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.58
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.57
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.57
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.57
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.57
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.56
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.56
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.56
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.56
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.56
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.56
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.56
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.56
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.55
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.55
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.55
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.55
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.55
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.55
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.55
3lkd_A	542	Type I restriction-modification system methyltrans	99.55
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.55
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.55
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.55
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.55
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.55
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.54
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.54
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.54
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.54
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.54
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.54
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.54
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.54
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.53
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.53
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.53
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.53
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.53
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.53
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.53
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.53
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.52
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.52
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.52
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.52
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.52
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.52
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.52
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.51
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.51
3khk_A	544	Type I restriction-modification system methylation	99.51
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.51
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.51
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.51
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.5
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.5
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.5
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.5
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.5
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.5
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.5
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.5
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.5
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.5
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.5
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.49
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.49
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.49
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.49
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.49
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.49
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.48
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.48
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.48
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.48
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.48
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.48
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.48
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.48
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.47
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.47
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.47
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.47
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.47
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.47
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.47
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.47
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.47
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.46
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.46
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.46
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.46
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.46
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.46
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.46
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.46
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.46
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.45
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.45
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.45
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.45
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.45
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.45
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.45
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.45
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.45
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.44
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.44
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.44
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.44
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.44
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.44
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.44
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.44
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.43
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.43
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.43
3ocj_A	305	Putative exported protein; structural genomics, PS	99.43
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.43
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.43
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.43
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.43
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.42
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.42
3ufb_A	530	Type I restriction-modification system methyltran	99.42
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.42
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.42
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.42
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.42
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.42
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.41
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.41
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.41
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.41
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.41
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.41
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.41
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.41
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.41
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.41
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.4
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.4
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.4
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.4
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.4
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.4
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.39
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.39
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.39
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.39
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.39
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.39
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.39
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.39
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.39
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.39
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.38
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.38
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.38
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.38
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.37
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.37
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.37
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.37
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.37
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.37
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.36
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.36
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.36
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.35
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.34
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.34
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.34
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.34
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.34
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.34
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.33
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.33
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.33
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.32
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.32
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.32
2o07_A	304	Spermidine synthase; structural genomics, structur	99.32
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.31
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.29
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.29
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.29
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.29
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.28
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.25
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.25
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.24
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.23
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.23
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.23
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.22
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.22
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.22
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.22
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.22
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.22
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.21
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.2
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.2
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.2
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.19
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.19
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	99.19
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.18
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.17
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.17
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.16
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.15
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.14
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.13
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.11
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.09
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.05
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.03
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.0
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.99
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.95
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.94
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.94
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.91
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.9
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.9
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.89
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.87
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.86
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.85
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.78
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.77
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.73
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.73
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.69
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.66
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	98.65
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.63
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.6
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.56
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.47
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.43
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.43
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.33
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.27
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	98.25
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.2
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	98.13
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.12
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.12
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.11
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	98.09
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.99
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.97
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.96
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.88
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.87
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.84
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.69
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.67
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.65
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.55
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.39
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.33
3me5_A	482	Cytosine-specific methyltransferase; structural ge	97.32
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.09
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.06
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.97
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	96.55
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	96.36
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.33
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	95.99
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	95.64
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.46
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.29
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.16
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.92
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	93.89
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.77
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	93.73
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.58
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.41
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	93.38
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	93.37
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	93.1
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	92.99
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.88
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	92.88
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.84
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	92.34
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	92.34
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	92.33
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	92.27
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	92.26
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	92.25
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	92.23
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	92.22
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	92.12
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.11
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	92.1
3imf_A	257	Short chain dehydrogenase; structural genomics, in	92.07
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	91.95
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	91.92
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	91.89
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	91.81
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	91.74
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	91.64
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	91.62
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	91.52
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	91.51
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	91.39
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.35
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	91.34
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	91.22
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	91.16
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	91.14
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	91.09
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	91.09
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	90.97
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.95
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	90.95
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	90.94
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	90.83
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	90.71
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.69
3cxt_A	291	Dehydrogenase with different specificities; rossma	90.67
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	90.54
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	90.5
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.48
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	90.46
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	90.24
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	90.1
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	89.99
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	89.83
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	89.82
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	89.81
1xq1_A	266	Putative tropinone reducatse; structural genomics,	89.8
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	89.8
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	89.69
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	89.68
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.65
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	89.63
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	89.57
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	89.55
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	89.47
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	89.46
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.45
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	89.39
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	89.33
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	89.32
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	89.32
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	89.28
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	89.24
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	89.22
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	89.17
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	89.12
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	89.07
4dqx_A	277	Probable oxidoreductase protein; structural genomi	89.03
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	89.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	88.91
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	88.86
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	88.65
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	88.49
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	88.46
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	88.44
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	88.36
1xkq_A	280	Short-chain reductase family member (5D234); parra	88.32
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	88.31
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	88.29
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	88.27
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.22
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	88.07
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	88.06
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	88.03
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	87.86
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	87.76
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	87.64
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	87.51
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	87.45
1xhl_A	297	Short-chain dehydrogenase/reductase family member	87.42
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	87.26
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	87.23
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	87.16
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	87.16
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	87.03
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	87.02
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	86.99
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	86.98
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	86.94
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	86.75
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	86.73
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	86.63
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	86.59
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	86.58
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	86.4
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	86.31
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	86.24
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	86.17
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	86.16
1spx_A	278	Short-chain reductase family member (5L265); paral	85.88
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	85.83
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	85.76
3rih_A	293	Short chain dehydrogenase or reductase; structural	85.63
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	85.55
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	85.54
1id1_A	153	Putative potassium channel protein; RCK domain, E.	85.47
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	85.39
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	85.29
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	85.18
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	85.16
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	85.14
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	85.07
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	85.02
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	85.02
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	84.87
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	84.86
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	84.78
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	84.6
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	84.57
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	84.48
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	84.45
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	84.16
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	84.16
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	84.06
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	83.92
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	83.89
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	83.88
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	83.66
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	83.63
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	83.33
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	83.27
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	83.0
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	82.93
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	82.79
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	82.77
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	82.71
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	82.5
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	82.46
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	82.38
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	81.96
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	81.79
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	81.76
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	81.75
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	81.65
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	81.57
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	81.53
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	81.46
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	81.42
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	81.31
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	81.2
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	81.2
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	81.04
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	80.89
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	80.58

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.92  E-value=6.2e-23  Score=159.85  Aligned_cols=198  Identities=38%  Similarity=0.586  Sum_probs=156.0

Q ss_pred             hHHHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCCh
Q psy17460          3 LKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDK   82 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~   82 (216)
                      .+.++...+.. ..+.+++..+++|+++..+.+.++..+... ...++.+|||+|||+|.++..++..+..+|+|+|+++
T Consensus         5 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~   82 (207)
T 1wy7_A            5 KKELAIALSKL-KGFKNPKVWLEQYRTPGNAASELLWLAYSL-GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK   82 (207)
T ss_dssp             CHHHHHHHHTS-CCCSSCCGGGTCCCCCHHHHHHHHHHHHHT-TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH
T ss_pred             HHHHHHHHhhC-cCCCCcccceeeecCchHHHHHHHHHHHHc-CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCH
Confidence            67778788777 888899999999999999999998777643 3457889999999999999999988767899999999


Q ss_pred             HHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEe--eCcc
Q psy17460         83 EILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLH--KTST  160 (216)
Q Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~--~~~~  160 (216)
                      .+++.++.++..+++ +++++.+|+  .+++     ++||+|++||||+....+....+++.+....+.+|+.+  ....
T Consensus        83 ~~~~~a~~~~~~~~~-~~~~~~~d~--~~~~-----~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~  154 (207)
T 1wy7_A           83 EAVDVLIENLGEFKG-KFKVFIGDV--SEFN-----SRVDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEV  154 (207)
T ss_dssp             HHHHHHHHHTGGGTT-SEEEEESCG--GGCC-----CCCSEEEECCCCSSSSTTTTHHHHHHHHHHCSEEEEEEECCHHH
T ss_pred             HHHHHHHHHHHHcCC-CEEEEECch--HHcC-----CCCCEEEEcCCCccccCCchHHHHHHHHHhcCcEEEEEeCCcCC
Confidence            999999999998888 899999999  6653     58999999999998877778889998888886688777  4444


Q ss_pred             hHHHHHHHHHhcCccceeeeeeeecCCCccccccccccceEEEEEEEEeecc
Q psy17460        161 RESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITSD  212 (216)
Q Consensus       161 ~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  212 (216)
                      .+.+.+.+.+. +. ....+....+.....+.++......+.+.++|..+.+
T Consensus       155 ~~~~~~~l~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  204 (207)
T 1wy7_A          155 RRFIEKFSWEH-GF-VVTHRLTTKIEIPLQFFFHRKKLERITVDIYRFSKVI  204 (207)
T ss_dssp             HHHHHHHHHHT-TE-EEEEEEEEEEEEC-----CCCCCEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHC-CC-eEEEEEEEecCCcccchhhhceeEEEEEEEEEEEEec
Confidence            55555444443 33 3444555556666677888888889999999987764

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.91  E-value=2.6e-22  Score=155.68  Aligned_cols=194  Identities=30%  Similarity=0.421  Sum_probs=139.3

Q ss_pred             hHHHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCCh
Q psy17460          3 LKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDK   82 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~   82 (216)
                      .+.++..++.+ +.+.+++..+++|+++..+.+.++..+... ...++.+|||+|||+|.++..++..+..+|+|+|+|+
T Consensus         7 ~~~le~~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~   84 (200)
T 1ne2_A            7 KNDLEIRLQKL-QQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDP   84 (200)
T ss_dssp             HHHHHHHHHTS-CCCC--------CCCCHHHHHHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCH
T ss_pred             HHHHHHHHHhc-CCCCccccceeecCCCHHHHHHHHHHHHhc-CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCH
Confidence            67888899888 899999999999999999999998777654 4457889999999999999999888666899999999


Q ss_pred             HHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchH
Q psy17460         83 EILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRE  162 (216)
Q Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~  162 (216)
                      .+++.++.++.     +++++.+|+  .+++     ++||+|++||||++...+....++..+++.++.+|..+...+..
T Consensus        85 ~~~~~a~~~~~-----~~~~~~~d~--~~~~-----~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  152 (200)
T 1ne2_A           85 DAIETAKRNCG-----GVNFMVADV--SEIS-----GKYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARD  152 (200)
T ss_dssp             HHHHHHHHHCT-----TSEEEECCG--GGCC-----CCEEEEEECCCC-------CHHHHHHHHHHEEEEEEEEEGGGHH
T ss_pred             HHHHHHHHhcC-----CCEEEECcH--HHCC-----CCeeEEEECCCchhccCchhHHHHHHHHHhcCcEEEEEcCchHH
Confidence            99999999986     689999999  6654     68999999999999866667788998888886688888777766


Q ss_pred             HHHHHHHHhcCccceeeeeeeecCCCccccccccccceEEEEEEEEeeccC
Q psy17460        163 SILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITSDY  213 (216)
Q Consensus       163 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  213 (216)
                      .+.+.+... +  ....+....+.....+.++........+.++++.+++|
T Consensus       153 ~~~~~~~~~-g--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~  200 (200)
T 1ne2_A          153 FLRREFSAR-G--DVFREEKVYITVPRIYRHHSYDRARIEAVIFGVRNHSF  200 (200)
T ss_dssp             HHHHHHHHH-E--EEEEEEEEEEECCSCCC------CEEEEEEEEEEESCC
T ss_pred             HHHHHHHHC-C--CEEEEEEEecCCCccccccccceeEEEEEEEEEEeccC
Confidence            665555443 1  12233333445455667888888889999999999886

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.84  E-value=1.1e-19  Score=139.71  Aligned_cols=158  Identities=16%  Similarity=0.290  Sum_probs=120.3

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEE
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAI  103 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~  103 (216)
                      ....+++..+.+.++..+.... ..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++.++..+++++++++
T Consensus        20 ~~~rp~~~~~~~~l~~~l~~~~-~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~   98 (189)
T 3p9n_A           20 RGTRPTTDRVRESLFNIVTARR-DLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLR   98 (189)
T ss_dssp             CCC---CHHHHHHHHHHHHHHS-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEE
T ss_pred             CCCccCcHHHHHHHHHHHHhcc-CCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence            4567888899999998887642 247889999999999999988887777999999999999999999999888789999


Q ss_pred             EecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHH--hcCccceeeee
Q psy17460        104 LFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQA--FKNVEQVDVIA  181 (216)
Q Consensus       104 ~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~--~l~~~~g~~~~  181 (216)
                      .+|+  .+.+.....++||+|++||||+...                        .....+++...+  +|+| +|.+++
T Consensus        99 ~~d~--~~~~~~~~~~~fD~i~~~~p~~~~~------------------------~~~~~~l~~~~~~~~L~p-gG~l~~  151 (189)
T 3p9n_A           99 RGAV--AAVVAAGTTSPVDLVLADPPYNVDS------------------------ADVDAILAALGTNGWTRE-GTVAVV  151 (189)
T ss_dssp             ESCH--HHHHHHCCSSCCSEEEECCCTTSCH------------------------HHHHHHHHHHHHSSSCCT-TCEEEE
T ss_pred             EccH--HHHHhhccCCCccEEEECCCCCcch------------------------hhHHHHHHHHHhcCccCC-CeEEEE
Confidence            9999  6664322237999999999998530                        122345555666  8999 999999


Q ss_pred             eeecCC-----Cccc-cccccccceEEEEEEEEe
Q psy17460        182 EMKYDL-----NQSY-KFHKKSLHDIEVDLLRII  209 (216)
Q Consensus       182 ~~~~~~-----~~~~-~~~~~~~~~~~~~~~r~~  209 (216)
                      +.....     ...+ ....+.+..+.+.+++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~  185 (189)
T 3p9n_A          152 ERATTCAPLTWPEGWRRWPQRVYGDTRLELAERL  185 (189)
T ss_dssp             EEETTSCCCCCCTTEEECCCEEETTEEEEEEEEC
T ss_pred             EecCCCCCccCCCceEEEEEcccCcEEEEEeccc
Confidence            876432     2334 445667778888888764

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.78  E-value=4.3e-18  Score=132.28  Aligned_cols=154  Identities=18%  Similarity=0.205  Sum_probs=110.4

Q ss_pred             cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC--CceEEE
Q psy17460         26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI--TNCDAI  103 (216)
Q Consensus        26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~--~~v~~~  103 (216)
                      ..+++..+.+.++..+...   .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+.|+..+++  ++++++
T Consensus        33 ~rp~~~~~~~~l~~~l~~~---~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~  109 (201)
T 2ift_A           33 LRPTGDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVI  109 (201)
T ss_dssp             -----CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred             cCcCHHHHHHHHHHHHHHh---cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEE
Confidence            3566777888887777642   26789999999999999988877767999999999999999999999887  589999


Q ss_pred             EecccccccccccccCc-ccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHH--HHhcCccceeee
Q psy17460        104 LFEINEKSLDSSVFKQK-VDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKI--QAFKNVEQVDVI  180 (216)
Q Consensus       104 ~~d~~~~~~~~~~~~~~-~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~--~~~l~~~~g~~~  180 (216)
                      .+|+  .+.......++ ||+|++||||+..                          ....+++..  .++|+| +|.++
T Consensus       110 ~~d~--~~~~~~~~~~~~fD~I~~~~~~~~~--------------------------~~~~~l~~~~~~~~Lkp-gG~l~  160 (201)
T 2ift_A          110 NQSS--LDFLKQPQNQPHFDVVFLDPPFHFN--------------------------LAEQAISLLCENNWLKP-NALIY  160 (201)
T ss_dssp             CSCH--HHHTTSCCSSCCEEEEEECCCSSSC--------------------------HHHHHHHHHHHTTCEEE-EEEEE
T ss_pred             ECCH--HHHHHhhccCCCCCEEEECCCCCCc--------------------------cHHHHHHHHHhcCccCC-CcEEE
Confidence            9999  66543211268 9999999998622                          112333334  456899 99998


Q ss_pred             eeeecCC----Cccc-cccccccceEEEEEEEEeec
Q psy17460        181 AEMKYDL----NQSY-KFHKKSLHDIEVDLLRIITS  211 (216)
Q Consensus       181 ~~~~~~~----~~~~-~~~~~~~~~~~~~~~r~~~~  211 (216)
                      +......    ...| ....+.++.+.+.+++..-+
T Consensus       161 i~~~~~~~~~~~~~~~~~~~~~yG~~~~~~~~~~~~  196 (201)
T 2ift_A          161 VETEKDKPLITPENWTLLKEKTTGIVSYRLYQNLEH  196 (201)
T ss_dssp             EEEESSSCCCCCTTEEEEEEEEETTEEEEEEEECC-
T ss_pred             EEECCCCCccccchhHHHHHHhcCCEEEEEEecchh
Confidence            8776433    2234 44556777888887776543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.76  E-value=2.1e-17  Score=128.46  Aligned_cols=154  Identities=16%  Similarity=0.163  Sum_probs=110.5

Q ss_pred             ccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEE
Q psy17460         25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAIL  104 (216)
Q Consensus        25 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~  104 (216)
                      ...+++..+.+.++..+...   .++.+|||+|||+|.+++.++..+..+|+|+|+|+.+++.|+.|+..+++++++++.
T Consensus        33 ~~rp~~~~~~~~l~~~l~~~---~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~  109 (202)
T 2fpo_A           33 GLRPTTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVN  109 (202)
T ss_dssp             -----CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHhh---cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEE
Confidence            34677788888888777642   267899999999999999888877679999999999999999999988877899999


Q ss_pred             ecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHH--HhcCccceeeeee
Q psy17460        105 FEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQ--AFKNVEQVDVIAE  182 (216)
Q Consensus       105 ~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~--~~l~~~~g~~~~~  182 (216)
                      +|+  .+.... ..++||+|++||||+..                          ....+++...  ++|+| +|.+++.
T Consensus       110 ~D~--~~~~~~-~~~~fD~V~~~~p~~~~--------------------------~~~~~l~~l~~~~~L~p-gG~l~i~  159 (202)
T 2fpo_A          110 SNA--MSFLAQ-KGTPHNIVFVDPPFRRG--------------------------LLEETINLLEDNGWLAD-EALIYVE  159 (202)
T ss_dssp             SCH--HHHHSS-CCCCEEEEEECCSSSTT--------------------------THHHHHHHHHHTTCEEE-EEEEEEE
T ss_pred             CCH--HHHHhh-cCCCCCEEEECCCCCCC--------------------------cHHHHHHHHHhcCccCC-CcEEEEE
Confidence            999  663221 12689999999998632                          1122333333  35899 9999887


Q ss_pred             eecCC-----Cccc-cccccccceEEEEEEEEeec
Q psy17460        183 MKYDL-----NQSY-KFHKKSLHDIEVDLLRIITS  211 (216)
Q Consensus       183 ~~~~~-----~~~~-~~~~~~~~~~~~~~~r~~~~  211 (216)
                      .....     ...| ....+.+....+.+++.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  194 (202)
T 2fpo_A          160 SEVENGLPTVPANWSLHREKVAGQVAYRLYQREAQ  194 (202)
T ss_dssp             EEGGGCSCCCCTTEEEEEEEEETTEEEEEEEECCC
T ss_pred             ECCCccccccCCcceEEeeeccCCEEEEEEEECCC
Confidence            66322     1234 44455677788888876443

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.75  E-value=2.7e-17  Score=125.43  Aligned_cols=152  Identities=19%  Similarity=0.253  Sum_probs=111.9

Q ss_pred             ccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEE
Q psy17460         25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAI  103 (216)
Q Consensus        25 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~  103 (216)
                      ...+++..+.+.++..+...   .++.+|||+|||+|.++..++..+..+|+|+|+++.+++.|+.++..+++. +++++
T Consensus        23 ~~rp~~~~~~~~~~~~l~~~---~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   99 (187)
T 2fhp_A           23 NTRPTTDKVKESIFNMIGPY---FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVR   99 (187)
T ss_dssp             SSCCCCHHHHHHHHHHHCSC---CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             CcCcCHHHHHHHHHHHHHhh---cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEE
Confidence            45677888888887776432   367899999999999999888876679999999999999999999988874 79999


Q ss_pred             Eecccccccccc--cccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHH--HHHhcCccceee
Q psy17460        104 LFEINEKSLDSS--VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKK--IQAFKNVEQVDV  179 (216)
Q Consensus       104 ~~d~~~~~~~~~--~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~--~~~~l~~~~g~~  179 (216)
                      .+|+  .+....  ...++||+|++||||+...                          ....++.  +.++|+| +|.+
T Consensus       100 ~~d~--~~~~~~~~~~~~~fD~i~~~~~~~~~~--------------------------~~~~~~~l~~~~~L~~-gG~l  150 (187)
T 2fhp_A          100 KMDA--NRALEQFYEEKLQFDLVLLDPPYAKQE--------------------------IVSQLEKMLERQLLTN-EAVI  150 (187)
T ss_dssp             ESCH--HHHHHHHHHTTCCEEEEEECCCGGGCC--------------------------HHHHHHHHHHTTCEEE-EEEE
T ss_pred             ECcH--HHHHHHHHhcCCCCCEEEECCCCCchh--------------------------HHHHHHHHHHhcccCC-CCEE
Confidence            9999  664321  0127899999999986321                          1112222  2677899 9999


Q ss_pred             eeeeecCCC--c---cc-cccccccceEEEEEEEE
Q psy17460        180 IAEMKYDLN--Q---SY-KFHKKSLHDIEVDLLRI  208 (216)
Q Consensus       180 ~~~~~~~~~--~---~~-~~~~~~~~~~~~~~~r~  208 (216)
                      ++.......  +   .| ....+....+.+.+++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  185 (187)
T 2fhp_A          151 VCETDKTVKLPETIGTLKKTRETVYGITQVTIYRQ  185 (187)
T ss_dssp             EEEEETTCCCCSEETTEEEEEEEEETTEEEEEEEC
T ss_pred             EEEeCCcccccccccchhhhhhhccCceEEEEEEe
Confidence            987774432  1   34 33445677777777764

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.73  E-value=6.2e-17  Score=121.57  Aligned_cols=147  Identities=13%  Similarity=0.200  Sum_probs=109.7

Q ss_pred             cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEe
Q psy17460         26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF  105 (216)
Q Consensus        26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~  105 (216)
                      ..+++..+.+.++..+...+  .++.+|||+|||+|.++..++..++ .|+|+|+|+.+++.++.++..+++ +++++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~   95 (171)
T 1ws6_A           20 ARPSPVRLRKALFDYLRLRY--PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-GARVVAL   95 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC--TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-CCEEECS
T ss_pred             CCCCHHHHHHHHHHHHHhhc--cCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC-ceEEEec
Confidence            56778888888888776531  1678999999999999999999877 599999999999999999998888 8999999


Q ss_pred             cccccccccc--cccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHH--HhcCccceeeee
Q psy17460        106 EINEKSLDSS--VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQ--AFKNVEQVDVIA  181 (216)
Q Consensus       106 d~~~~~~~~~--~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~--~~l~~~~g~~~~  181 (216)
                      |+  .+....  ...++||+|++||||+ ..                          ....++...  ++|+| +|.+++
T Consensus        96 d~--~~~~~~~~~~~~~~D~i~~~~~~~-~~--------------------------~~~~~~~~~~~~~L~~-gG~~~~  145 (171)
T 1ws6_A           96 PV--EVFLPEAKAQGERFTVAFMAPPYA-MD--------------------------LAALFGELLASGLVEA-GGLYVL  145 (171)
T ss_dssp             CH--HHHHHHHHHTTCCEEEEEECCCTT-SC--------------------------TTHHHHHHHHHTCEEE-EEEEEE
T ss_pred             cH--HHHHHhhhccCCceEEEEECCCCc-hh--------------------------HHHHHHHHHhhcccCC-CcEEEE
Confidence            99  664221  1124899999999986 21                          012233333  88899 999998


Q ss_pred             eeecCCCccccccccccceEEEEEEE
Q psy17460        182 EMKYDLNQSYKFHKKSLHDIEVDLLR  207 (216)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~r  207 (216)
                      ......... .+..+.+....+.+++
T Consensus       146 ~~~~~~~~~-~~~~~~y~~~~~~~~~  170 (171)
T 1ws6_A          146 QHPKDLYLP-LGERRVYGENALTLVE  170 (171)
T ss_dssp             EEETTSCCT-TSEEEEETTEEEEEEE
T ss_pred             EeCCccCCc-hhhhhccCcEEEEEEE
Confidence            777543322 4555566666666655

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.71  E-value=6.6e-17  Score=122.55  Aligned_cols=154  Identities=18%  Similarity=0.223  Sum_probs=107.3

Q ss_pred             ccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEE
Q psy17460         25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAI  103 (216)
Q Consensus        25 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~  103 (216)
                      ...+++..+.+.++..+..   ..++.+|||+|||+|.++..++..+..+|+|+|+++.+++.++.++..+++. +++++
T Consensus        10 ~~rp~~~~~~~~~~~~l~~---~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   86 (177)
T 2esr_A           10 ITRPTSDKVRGAIFNMIGP---YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLL   86 (177)
T ss_dssp             --------CHHHHHHHHCS---CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEE
T ss_pred             CCCcCHHHHHHHHHHHHHh---hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEE
Confidence            3456666777777766642   2467899999999999999998886679999999999999999999988875 79999


Q ss_pred             EecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHH--HhcCccceeeee
Q psy17460        104 LFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQ--AFKNVEQVDVIA  181 (216)
Q Consensus       104 ~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~--~~l~~~~g~~~~  181 (216)
                      .+|+  .+.... ..++||+|++||||+..       ..                   ...++...  ++|+| +|.+++
T Consensus        87 ~~d~--~~~~~~-~~~~fD~i~~~~~~~~~-------~~-------------------~~~~~~l~~~~~L~~-gG~l~~  136 (177)
T 2esr_A           87 KMEA--ERAIDC-LTGRFDLVFLDPPYAKE-------TI-------------------VATIEALAAKNLLSE-QVMVVC  136 (177)
T ss_dssp             CSCH--HHHHHH-BCSCEEEEEECCSSHHH-------HH-------------------HHHHHHHHHTTCEEE-EEEEEE
T ss_pred             ECcH--HHhHHh-hcCCCCEEEECCCCCcc-------hH-------------------HHHHHHHHhCCCcCC-CcEEEE
Confidence            9999  663221 11579999999998521       01                   12233333  78899 999999


Q ss_pred             eeecCCC-----ccc-cccccccceEEEEEEEEeec
Q psy17460        182 EMKYDLN-----QSY-KFHKKSLHDIEVDLLRIITS  211 (216)
Q Consensus       182 ~~~~~~~-----~~~-~~~~~~~~~~~~~~~r~~~~  211 (216)
                      +......     ..| ....+.+....+.+++....
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~  172 (177)
T 2esr_A          137 ETDKTVLLPKEIATLGIWKEKIYGISKVTVYVNEGH  172 (177)
T ss_dssp             EEETTCCCCSEETTEEEEEEEEETTEEEEEEEETTC
T ss_pred             EECCccccccccCceEEEEeeecCcEEEEEEEeccc
Confidence            7774432     123 33356677788887776544

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.71  E-value=1.4e-16  Score=128.35  Aligned_cols=83  Identities=18%  Similarity=0.300  Sum_probs=70.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|.+++.+++.++.+|+|+|+++.+++.|+.|+..+++. +++++.+|+  .+.......++||+|++|
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~--~~~~~~~~~~~fD~Ii~n  126 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL--KKITDLIPKERADIVTCN  126 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCG--GGGGGTSCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcH--HHhhhhhccCCccEEEEC
Confidence            68899999999999999999887679999999999999999999999886 699999999  666532223799999999


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      |||...
T Consensus       127 pPy~~~  132 (259)
T 3lpm_A          127 PPYFAT  132 (259)
T ss_dssp             CCC---
T ss_pred             CCCCCC
Confidence            999754

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.68  E-value=7.3e-16  Score=124.32  Aligned_cols=130  Identities=13%  Similarity=0.097  Sum_probs=89.0

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhH---hCCC-ceEEEEeccccccccc-----cc
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNE---FEIT-NCDAILFEINEKSLDS-----SV  116 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~---~~~~-~v~~~~~d~~~~~~~~-----~~  116 (216)
                      ..++.+|||+|||+|.+++.++...+ .+|+|+|+++.+++.|++|+..   +++. +++++.+|+  .+...     ..
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~--~~~~~~~~~~~~  111 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV--TLRAKARVEAGL  111 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT--TCCHHHHHHTTC
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCH--HHHhhhhhhhcc
Confidence            34678999999999999999998864 6999999999999999999988   7776 599999999  66521     01


Q ss_pred             ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460        117 FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD  186 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  186 (216)
                      ..++||+|++||||.... ....  ..    ..+.+-..........+++.+.++|+| +|.+++..+..
T Consensus       112 ~~~~fD~Vv~nPPy~~~~-~~~~--~~----~~~~~a~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~  173 (260)
T 2ozv_A          112 PDEHFHHVIMNPPYNDAG-DRRT--PD----ALKAEAHAMTEGLFEDWIRTASAIMVS-GGQLSLISRPQ  173 (260)
T ss_dssp             CTTCEEEEEECCCC----------------------------CCHHHHHHHHHHHEEE-EEEEEEEECGG
T ss_pred             CCCCcCEEEECCCCcCCC-CCCC--cC----HHHHHHhhcCcCCHHHHHHHHHHHcCC-CCEEEEEEcHH
Confidence            126899999999998542 0000  00    000000001122356777788888888 88888766543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.68  E-value=5.2e-16  Score=130.45  Aligned_cols=131  Identities=20%  Similarity=0.154  Sum_probs=94.8

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-C-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEE
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-A-DFCFALECDKEILDIFIDNKNEFEITNCDAIL  104 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~  104 (216)
                      .+..+.++..++...    ...++.+|||+|||+|.++++++..+ + .+++|+|+|+.+++.|+.|+...++.++++++
T Consensus       185 a~l~~~la~~l~~~~----~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~  260 (354)
T 3tma_A          185 GSLTPVLAQALLRLA----DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLR  260 (354)
T ss_dssp             CSCCHHHHHHHHHHT----TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCcCHHHHHHHHHHh----CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEe
Confidence            344445555554443    44578899999999999999998864 3 69999999999999999999999987899999


Q ss_pred             ecccccccccccccCcccEEEEcCCCCCCC-CCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        105 FEINEKSLDSSVFKQKVDTVIMNPPFGTRN-CGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       105 ~d~~~~~~~~~~~~~~~D~vi~npp~~~~~-~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      +|+  .+++...  +.||+|++||||+.+. ...+.                  ......+++.+.++|+| +|.+++..
T Consensus       261 ~D~--~~~~~~~--~~~D~Ii~npPyg~r~~~~~~~------------------~~~~~~~~~~~~~~Lkp-gG~l~i~t  317 (354)
T 3tma_A          261 ADA--RHLPRFF--PEVDRILANPPHGLRLGRKEGL------------------FHLYWDFLRGALALLPP-GGRVALLT  317 (354)
T ss_dssp             CCG--GGGGGTC--CCCSEEEECCCSCC----CHHH------------------HHHHHHHHHHHHHTSCT-TCEEEEEE
T ss_pred             CCh--hhCcccc--CCCCEEEECCCCcCccCCcccH------------------HHHHHHHHHHHHHhcCC-CcEEEEEe
Confidence            999  7765443  5689999999998651 11000                  00113455666777777 77777644


Q ss_pred             e
Q psy17460        184 K  184 (216)
Q Consensus       184 ~  184 (216)
                      .
T Consensus       318 ~  318 (354)
T 3tma_A          318 L  318 (354)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.67  E-value=1.3e-15  Score=124.55  Aligned_cols=141  Identities=18%  Similarity=0.190  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccc
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINE  109 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~  109 (216)
                      +.+.+.++..+...    ++.+|||+|||+|.+++.++.....+|+|+|+|+.+++.|+.|+..+++. +++++.+|+  
T Consensus       109 e~lv~~~l~~~~~~----~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~--  182 (284)
T 1nv8_A          109 EELVELALELIRKY----GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF--  182 (284)
T ss_dssp             HHHHHHHHHHHHHH----TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST--
T ss_pred             HHHHHHHHHHhccc----CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcc--
Confidence            34555555544332    56799999999999999988883369999999999999999999999887 499999999  


Q ss_pred             cccccccccCcc---cEEEEcCCCCCCCCCCC---HHHHHHHhhcCCceEEEeeCcchHHHHHHHH-HhcCccceeeeee
Q psy17460        110 KSLDSSVFKQKV---DTVIMNPPFGTRNCGID---LAFVQYAADISKVVYSLHKTSTRESILKKIQ-AFKNVEQVDVIAE  182 (216)
Q Consensus       110 ~~~~~~~~~~~~---D~vi~npp~~~~~~~~~---~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~-~~l~~~~g~~~~~  182 (216)
                      .+...    ++|   |+|++||||........   ......++.         ...+.-.+++... +.++| +|.++++
T Consensus       183 ~~~~~----~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~---------~~~dgl~~~~~i~~~~l~p-gG~l~~e  248 (284)
T 1nv8_A          183 LEPFK----EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALF---------GGEDGLDFYREFFGRYDTS-GKIVLME  248 (284)
T ss_dssp             TGGGG----GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHB---------CTTTSCHHHHHHHHHCCCT-TCEEEEE
T ss_pred             hhhcc----cccCCCCEEEEcCCCCCcccccChhhccCcHHHhc---------CCCcHHHHHHHHHHhcCCC-CCEEEEE
Confidence            66332    478   99999999985411000   000011111         1122335667777 88899 9999999


Q ss_pred             eecCCCccc
Q psy17460        183 MKYDLNQSY  191 (216)
Q Consensus       183 ~~~~~~~~~  191 (216)
                      ++....+..
T Consensus       249 ~~~~q~~~v  257 (284)
T 1nv8_A          249 IGEDQVEEL  257 (284)
T ss_dssp             CCTTCHHHH
T ss_pred             ECchHHHHH
Confidence            997765443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.66  E-value=4.6e-16  Score=123.58  Aligned_cols=96  Identities=26%  Similarity=0.358  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecc
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEI  107 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~  107 (216)
                      ++..+.+.++..+...   .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.++.++..+++. +++++.+|+
T Consensus        61 ~~~~~~~~l~~~~~~~---~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~  136 (241)
T 3gdh_A           61 TPEKIAEHIAGRVSQS---FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDF  136 (241)
T ss_dssp             CCHHHHHHHHHHHHHH---SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CHHHHHHHHHHHhhhc---cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECCh
Confidence            5566677777766654   368899999999999999999987 59999999999999999999999884 899999999


Q ss_pred             cccccccccccCcccEEEEcCCCCCC
Q psy17460        108 NEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       108 ~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                        .+.+..   ++||+|++||||+..
T Consensus       137 --~~~~~~---~~~D~v~~~~~~~~~  157 (241)
T 3gdh_A          137 --LLLASF---LKADVVFLSPPWGGP  157 (241)
T ss_dssp             --HHHGGG---CCCSEEEECCCCSSG
T ss_pred             --HHhccc---CCCCEEEECCCcCCc
Confidence              776633   799999999999976

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.66  E-value=1.3e-15  Score=127.55  Aligned_cols=151  Identities=11%  Similarity=0.068  Sum_probs=106.1

Q ss_pred             CCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC------CEEEEEeCChHHHHHHHHh
Q psy17460         18 SNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA------DFCFALECDKEILDIFIDN   91 (216)
Q Consensus        18 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~------~~v~~iD~~~~~~~~~~~~   91 (216)
                      .......++|.||..+...+...+.......++.+|||+|||+|.++..++....      .+++|+|+++.+++.|+.|
T Consensus        99 ~~~~~~~g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n  178 (344)
T 2f8l_A           99 MKHGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVG  178 (344)
T ss_dssp             TSSSCCGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHH
T ss_pred             hhcccccCcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHH
Confidence            3345567899999988877666554322234567999999999999988877632      5899999999999999999


Q ss_pred             hhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcc-hHHHHHHHHH
Q psy17460         92 KNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTST-RESILKKIQA  170 (216)
Q Consensus        92 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~-~~~~~~~~~~  170 (216)
                      +...++ +++++.+|+  ......   ++||+|++||||+.....  .  ..........    ..... ...++..+.+
T Consensus       179 ~~~~g~-~~~i~~~D~--l~~~~~---~~fD~Ii~NPPfg~~~~~--~--~~~~~~~~~~----~g~~~~~~~~l~~~~~  244 (344)
T 2f8l_A          179 ADLQRQ-KMTLLHQDG--LANLLV---DPVDVVISDLPVGYYPDD--E--NAKTFELCRE----EGHSFAHFLFIEQGMR  244 (344)
T ss_dssp             HHHHTC-CCEEEESCT--TSCCCC---CCEEEEEEECCCSEESCH--H--HHTTSTTCCS----SSCEEHHHHHHHHHHH
T ss_pred             HHhCCC-CceEEECCC--CCcccc---CCccEEEECCCCCCcCch--h--hhhhccccCC----CCcchHHHHHHHHHHH
Confidence            988887 799999999  664332   689999999999754211  0  0000111000    00011 2246777788


Q ss_pred             hcCccceeeeeee
Q psy17460        171 FKNVEQVDVIAEM  183 (216)
Q Consensus       171 ~l~~~~g~~~~~~  183 (216)
                      +|+| +|++++..
T Consensus       245 ~Lk~-gG~~~~v~  256 (344)
T 2f8l_A          245 YTKP-GGYLFFLV  256 (344)
T ss_dssp             TEEE-EEEEEEEE
T ss_pred             HhCC-CCEEEEEE
Confidence            8899 88888766

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.65  E-value=6.6e-15  Score=114.06  Aligned_cols=95  Identities=22%  Similarity=0.225  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI  107 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~  107 (216)
                      ++..+...++..+.    ..++.+|||+|||+|.++..++..++ .+|+|+|+++.+++.+++++..+++++++++.+|+
T Consensus        24 ~~~~i~~~~l~~l~----~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~   99 (204)
T 3e05_A           24 TKQEVRAVTLSKLR----LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFA   99 (204)
T ss_dssp             CCHHHHHHHHHHTT----CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCT
T ss_pred             ChHHHHHHHHHHcC----CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCCh
Confidence            66777766666553    34788999999999999999998874 79999999999999999999988887899999999


Q ss_pred             cccccccccccCcccEEEEcCCCC
Q psy17460        108 NEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       108 ~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                        .+.....  ++||+|+++.++.
T Consensus       100 --~~~~~~~--~~~D~i~~~~~~~  119 (204)
T 3e05_A          100 --PEGLDDL--PDPDRVFIGGSGG  119 (204)
T ss_dssp             --TTTCTTS--CCCSEEEESCCTT
T ss_pred             --hhhhhcC--CCCCEEEECCCCc
Confidence              6654432  6899999998875

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.65  E-value=4.3e-15  Score=117.07  Aligned_cols=126  Identities=16%  Similarity=0.137  Sum_probs=85.3

Q ss_pred             CCCCEEEEecCC-CCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCG-SGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~G-tG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+||| +|.++..++.....+|+|+|+|+.+++.|+.++..++. +++++.+|+  ...... ..++||+|++
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~--~~~~~~-~~~~fD~I~~  129 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNG--GIIKGV-VEGTFDVIFS  129 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSS--CSSTTT-CCSCEEEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCc--hhhhhc-ccCceeEEEE
Confidence            368899999999 99999998887345999999999999999999999988 899999997  333211 1278999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      ||||+......... -..++..+.     ........+++.+.++|+| +|.+++...
T Consensus       130 npp~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~  180 (230)
T 3evz_A          130 APPYYDKPLGRVLT-EREAIGGGK-----YGEEFSVKLLEEAFDHLNP-GGKVALYLP  180 (230)
T ss_dssp             CCCCC----------------CCS-----SSCHHHHHHHHHHGGGEEE-EEEEEEEEE
T ss_pred             CCCCcCCccccccC-hhhhhccCc-----cchHHHHHHHHHHHHHhCC-CeEEEEEec
Confidence            99998762211000 000010000     0111235667777777888 887777443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.65  E-value=1.7e-15  Score=123.09  Aligned_cols=147  Identities=12%  Similarity=0.127  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccc
Q psy17460         34 AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL  112 (216)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  112 (216)
                      .+.++..+...+. .++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.++.|+..+++++++++.+|+  .+.
T Consensus        95 te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~--~~~  171 (276)
T 2b3t_A           95 TECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW--FSA  171 (276)
T ss_dssp             HHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST--TGG
T ss_pred             HHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcch--hhh
Confidence            4445555544433 367799999999999999988653 369999999999999999999998887899999999  664


Q ss_pred             ccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEEe-eCcchHHHHHHHHHhcCccceeeeeeeecCCCc
Q psy17460        113 DSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSLH-KTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQ  189 (216)
Q Consensus       113 ~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  189 (216)
                      ...   ++||+|++||||+....   ......++.....  ++... .......+++.+.++|+| +|.++++.++....
T Consensus       172 ~~~---~~fD~Iv~npPy~~~~~---~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~  244 (276)
T 2b3t_A          172 LAG---QQFAMIVSNPPYIDEQD---PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS-GGFLLLEHGWQQGE  244 (276)
T ss_dssp             GTT---CCEEEEEECCCCBCTTC---HHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE-EEEEEEECCSSCHH
T ss_pred             ccc---CCccEEEECCCCCCccc---cccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEEECchHHH
Confidence            322   68999999999985421   1111111111110  11000 012346778888999999 99999988876544


Q ss_pred             c
Q psy17460        190 S  190 (216)
Q Consensus       190 ~  190 (216)
                      .
T Consensus       245 ~  245 (276)
T 2b3t_A          245 A  245 (276)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.65  E-value=1.3e-16  Score=123.89  Aligned_cols=151  Identities=13%  Similarity=0.055  Sum_probs=79.6

Q ss_pred             CHHHHHHHHHHHHhhcCC-CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460         30 PPHLAATILHTIQNNYND-IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI  107 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~-~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~  107 (216)
                      |....+.++..+...+.. .++.+|||+|||+|.++..++..++ .+++|+|+|+.+++.++.++..++. +++++.+|+
T Consensus        10 p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~   88 (215)
T 4dzr_A           10 PRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADG   88 (215)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHH
T ss_pred             CCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcch
Confidence            334445555555544443 5788999999999999999999865 6999999999999999999988887 899999999


Q ss_pred             cccccccc--cccCcccEEEEcCCCCCCCCCCCHHHHHHHhh-cCCc--eEEE-eeCcchHHHHHHHHHhcCcccee-ee
Q psy17460        108 NEKSLDSS--VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAAD-ISKV--VYSL-HKTSTRESILKKIQAFKNVEQVD-VI  180 (216)
Q Consensus       108 ~~~~~~~~--~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~-~~~~--ly~~-~~~~~~~~~~~~~~~~l~~~~g~-~~  180 (216)
                        .+....  ...++||+|++||||+.......   +..... ....  +... ........+++.+.++|+| +|. ++
T Consensus        89 --~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~  162 (215)
T 4dzr_A           89 --IEWLIERAERGRPWHAIVSNPPYIPTGEIDQ---LEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR-GRAGVF  162 (215)
T ss_dssp             --HHHHHHHHHTTCCBSEEEECCCCCC---------------------------CTTHHHHHHHTCCGGGBCS-SSEEEE
T ss_pred             --HhhhhhhhhccCcccEEEECCCCCCCccccc---cChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC-CCeEEE
Confidence              652211  01268999999999986511100   000000 0000  0000 0000125666677888999 998 77


Q ss_pred             eeeecCC
Q psy17460        181 AEMKYDL  187 (216)
Q Consensus       181 ~~~~~~~  187 (216)
                      ++.+...
T Consensus       163 ~~~~~~~  169 (215)
T 4dzr_A          163 LEVGHNQ  169 (215)
T ss_dssp             EECTTSC
T ss_pred             EEECCcc
Confidence            7666443

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.63  E-value=1.2e-14  Score=122.96  Aligned_cols=126  Identities=21%  Similarity=0.325  Sum_probs=96.3

Q ss_pred             cccCCCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhh
Q psy17460         15 FNFSNPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNK   92 (216)
Q Consensus        15 ~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~   92 (216)
                      ..+..+...+.+ |.++......++.....  ...++.+|||+| |+|.++..++..++ .+|+|+|+|+.+++.|++|+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~  215 (373)
T 2qm3_A          139 KDRPEPLHEFDQAYVTPETTVARVILMHTR--GDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAA  215 (373)
T ss_dssp             TTCCCCCGGGTCCCBCHHHHHHHHHHHHHT--TCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHH
T ss_pred             hcCCccchhcCCeecCHHHHHHHHHHHhhc--CCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            566667777777 77777777666654322  234688999999 99999999998876 79999999999999999999


Q ss_pred             hHhCCCceEEEEecccccc-cccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcC
Q psy17460         93 NEFEITNCDAILFEINEKS-LDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADIS  149 (216)
Q Consensus        93 ~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~  149 (216)
                      ..+++.+++++.+|+  .+ ++.. ..++||+|++||||+...   ...++..+.+.+
T Consensus       216 ~~~g~~~v~~~~~D~--~~~l~~~-~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~L  267 (373)
T 2qm3_A          216 NEIGYEDIEIFTFDL--RKPLPDY-ALHKFDTFITDPPETLEA---IRAFVGRGIATL  267 (373)
T ss_dssp             HHHTCCCEEEECCCT--TSCCCTT-TSSCBSEEEECCCSSHHH---HHHHHHHHHHTB
T ss_pred             HHcCCCCEEEEEChh--hhhchhh-ccCCccEEEECCCCchHH---HHHHHHHHHHHc
Confidence            998877899999999  66 4421 125899999999997541   244555554443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.63  E-value=6.4e-15  Score=124.78  Aligned_cols=113  Identities=12%  Similarity=0.177  Sum_probs=84.6

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC---ceEEEEecccccccccccccCcc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT---NCDAILFEINEKSLDSSVFKQKV  121 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~---~v~~~~~d~~~~~~~~~~~~~~~  121 (216)
                      ...++.+|||+|||+|.+++.+++.++ .+|+|+|+|+.+++.++.|+..+++.   +++++.+|+  .+....   ++|
T Consensus       219 ~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~--~~~~~~---~~f  293 (375)
T 4dcm_A          219 PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA--LSGVEP---FRF  293 (375)
T ss_dssp             CCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECST--TTTCCT---TCE
T ss_pred             cccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechh--hccCCC---CCe
Confidence            334668999999999999999999864 79999999999999999999998865   588999999  664322   689


Q ss_pred             cEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        122 DTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       122 D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      |+|++||||+.....                    .......+++.+.++|+| +|.+++...
T Consensus       294 D~Ii~nppfh~~~~~--------------------~~~~~~~~l~~~~~~Lkp-gG~l~iv~n  335 (375)
T 4dcm_A          294 NAVLCNPPFHQQHAL--------------------TDNVAWEMFHHARRCLKI-NGELYIVAN  335 (375)
T ss_dssp             EEEEECCCC---------------------------CCHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred             eEEEECCCcccCccc--------------------CHHHHHHHHHHHHHhCCC-CcEEEEEEE
Confidence            999999999853100                    001123456667777777 777777544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.62  E-value=1.8e-15  Score=123.22  Aligned_cols=79  Identities=18%  Similarity=0.256  Sum_probs=71.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++++|||+|||+|.+++.+++.++.+|+|+|+|+.+++.|+.|+..+++. +++++.+|+  .+++..   ++||+|++|
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~--~~~~~~---~~fD~Vi~~  199 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN--RDFPGE---NIADRILMG  199 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT--TTCCCC---SCEEEEEEC
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCH--HHhccc---CCccEEEEC
Confidence            58899999999999999999987768999999999999999999999987 499999999  777652   799999999


Q ss_pred             CCCCC
Q psy17460        128 PPFGT  132 (216)
Q Consensus       128 pp~~~  132 (216)
                      ||+..
T Consensus       200 ~p~~~  204 (278)
T 2frn_A          200 YVVRT  204 (278)
T ss_dssp             CCSSG
T ss_pred             CchhH
Confidence            99753

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.62  E-value=3.7e-15  Score=124.32  Aligned_cols=100  Identities=12%  Similarity=0.050  Sum_probs=79.6

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc--eEEEE
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN--CDAIL  104 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~--v~~~~  104 (216)
                      |+.....+..+...+...   .++.+|||+|||+|.+++.++..++ +|+++|+|+.+++.++.|+..+++.+  ++++.
T Consensus       134 f~dq~~~~~~l~~~~~~~---~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~  209 (332)
T 2igt_A          134 FPEQIVHWEWLKNAVETA---DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC  209 (332)
T ss_dssp             CGGGHHHHHHHHHHHHHS---SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC
T ss_pred             chHHHHHHHHHHHHHHhc---CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence            454555555666665421   2577999999999999999999887 99999999999999999999998863  99999


Q ss_pred             eccccccccccc--ccCcccEEEEcCCCCC
Q psy17460        105 FEINEKSLDSSV--FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       105 ~d~~~~~~~~~~--~~~~~D~vi~npp~~~  132 (216)
                      +|+  .++....  ..++||+|++|||+..
T Consensus       210 ~D~--~~~l~~~~~~~~~fD~Ii~dPP~~~  237 (332)
T 2igt_A          210 EDA--MKFIQREERRGSTYDIILTDPPKFG  237 (332)
T ss_dssp             SCH--HHHHHHHHHHTCCBSEEEECCCSEE
T ss_pred             CcH--HHHHHHHHhcCCCceEEEECCcccc
Confidence            999  7654321  1268999999999643

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.62  E-value=3e-14  Score=107.63  Aligned_cols=87  Identities=20%  Similarity=0.317  Sum_probs=68.8

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN  108 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  108 (216)
                      +|....+.++..+...  ..++.+|||+|||+|.++..+++.+  +|+|+|+|+.+++.         .++++++.+|+ 
T Consensus         5 ~P~~~~~~l~~~l~~~--~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~---------~~~~~~~~~d~-   70 (170)
T 3q87_B            5 EPGEDTYTLMDALERE--GLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------HRGGNLVRADL-   70 (170)
T ss_dssp             CCCHHHHHHHHHHHHH--TCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------CSSSCEEECST-
T ss_pred             CcCccHHHHHHHHHhh--cCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------ccCCeEEECCh-
Confidence            3455556666665441  1367799999999999999999987  99999999999987         22789999999 


Q ss_pred             ccccccccccCcccEEEEcCCCCCC
Q psy17460        109 EKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       109 ~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                       .+....   ++||+|++||||+..
T Consensus        71 -~~~~~~---~~fD~i~~n~~~~~~   91 (170)
T 3q87_B           71 -LCSINQ---ESVDVVVFNPPYVPD   91 (170)
T ss_dssp             -TTTBCG---GGCSEEEECCCCBTT
T ss_pred             -hhhccc---CCCCEEEECCCCccC
Confidence             663322   699999999999975

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.62  E-value=1.5e-14  Score=122.73  Aligned_cols=126  Identities=18%  Similarity=0.225  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhhc--CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460         34 AATILHTIQNNY--NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS  111 (216)
Q Consensus        34 ~~~~~~~~~~~~--~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  111 (216)
                      .+.++..+...+  ...++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++.|+..+++ +++++.+|+  .+
T Consensus       216 t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~--~~  291 (381)
T 3dmg_A          216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL-KAQALHSDV--DE  291 (381)
T ss_dssp             HHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC-CCEEEECST--TT
T ss_pred             HHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcch--hh
Confidence            344555554332  124678999999999999999999865 999999999999999999999887 599999999  77


Q ss_pred             cccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460        112 LDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD  186 (216)
Q Consensus       112 ~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  186 (216)
                      .+...  ++||+|++||||+.....                    .......+++.+.++|+| +|.+++.....
T Consensus       292 ~~~~~--~~fD~Ii~npp~~~~~~~--------------------~~~~~~~~l~~~~~~Lkp-GG~l~iv~n~~  343 (381)
T 3dmg_A          292 ALTEE--ARFDIIVTNPPFHVGGAV--------------------ILDVAQAFVNVAAARLRP-GGVFFLVSNPF  343 (381)
T ss_dssp             TSCTT--CCEEEEEECCCCCTTCSS--------------------CCHHHHHHHHHHHHHEEE-EEEEEEEECTT
T ss_pred             ccccC--CCeEEEEECCchhhcccc--------------------cHHHHHHHHHHHHHhcCc-CcEEEEEEcCC
Confidence            65432  699999999999863110                    011334667777888888 88888866533

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.62  E-value=5.8e-15  Score=118.11  Aligned_cols=133  Identities=18%  Similarity=0.178  Sum_probs=93.8

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc--C-CCEEEEEeCChHHHHHHHHhhhHh---CCCc----
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL--G-ADFCFALECDKEILDIFIDNKNEF---EITN----   99 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~--~-~~~v~~iD~~~~~~~~~~~~~~~~---~~~~----   99 (216)
                      +..+...++..+...+...++.+|||+|||+|.+++.++..  . ..+|+|+|+|+.+++.|+.++...   ++.+    
T Consensus        32 ~~~la~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~  111 (250)
T 1o9g_A           32 PVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELE  111 (250)
T ss_dssp             CHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchh
Confidence            34555566666665444346679999999999999998876  3 368999999999999999988765   4321    


Q ss_pred             ----------------------eE-------------EEEecccccccccc---cccCcccEEEEcCCCCCCCCCCCHHH
Q psy17460        100 ----------------------CD-------------AILFEINEKSLDSS---VFKQKVDTVIMNPPFGTRNCGIDLAF  141 (216)
Q Consensus       100 ----------------------v~-------------~~~~d~~~~~~~~~---~~~~~~D~vi~npp~~~~~~~~~~~~  141 (216)
                                            ++             ++.+|+  .+....   ...++||+|+|||||+.......   
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~---  186 (250)
T 1o9g_A          112 RREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADV--FDPRALSAVLAGSAPDVVLTDLPYGERTHWEG---  186 (250)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCT--TCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS---
T ss_pred             hhhhhhhcccccchhhhhhhhhhhhhccccccccccceeeccc--ccccccccccCCCCceEEEeCCCeeccccccc---
Confidence                                  66             999999  664310   01148999999999986521100   


Q ss_pred             HHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460        142 VQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA  181 (216)
Q Consensus       142 ~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~  181 (216)
                              .     ........+++.+.++|+| +|.+++
T Consensus       187 --------~-----~~~~~~~~~l~~~~~~Lkp-gG~l~~  212 (250)
T 1o9g_A          187 --------Q-----VPGQPVAGLLRSLASALPA-HAVIAV  212 (250)
T ss_dssp             --------C-----CCHHHHHHHHHHHHHHSCT-TCEEEE
T ss_pred             --------c-----ccccHHHHHHHHHHHhcCC-CcEEEE
Confidence                    0     0011234677778899999 999998

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.62  E-value=1.4e-14  Score=110.41  Aligned_cols=91  Identities=15%  Similarity=0.274  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc--eEEEEecccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN--CDAILFEINE  109 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~--v~~~~~d~~~  109 (216)
                      ...+.++..+.    ..++.+|||+|||+|.++..++.. ..+++|+|+++.+++.++.++...++++  ++++.+|+  
T Consensus        39 ~~~~~l~~~~~----~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~--  111 (194)
T 1dus_A           39 KGTKILVENVV----VDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL--  111 (194)
T ss_dssp             HHHHHHHHHCC----CCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST--
T ss_pred             hHHHHHHHHcc----cCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECch--
Confidence            45555555543    347889999999999999999888 5599999999999999999999888766  99999999  


Q ss_pred             cccccccccCcccEEEEcCCCCC
Q psy17460        110 KSLDSSVFKQKVDTVIMNPPFGT  132 (216)
Q Consensus       110 ~~~~~~~~~~~~D~vi~npp~~~  132 (216)
                      .+....   ++||+|++++||+.
T Consensus       112 ~~~~~~---~~~D~v~~~~~~~~  131 (194)
T 1dus_A          112 YENVKD---RKYNKIITNPPIRA  131 (194)
T ss_dssp             TTTCTT---SCEEEEEECCCSTT
T ss_pred             hccccc---CCceEEEECCCccc
Confidence            664432   68999999999974

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.62  E-value=3.2e-15  Score=126.84  Aligned_cols=97  Identities=22%  Similarity=0.366  Sum_probs=78.4

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-----------------------------------
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-----------------------------------   72 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-----------------------------------   72 (216)
                      |..+.++..++.    .....++..++|++||+|+++++++..+.                                   
T Consensus       177 pl~e~LAaall~----l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~  252 (384)
T 3ldg_A          177 PIKENMAAAIIL----LSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQAD  252 (384)
T ss_dssp             CCCHHHHHHHHH----HTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHH----HhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhh
Confidence            334445444443    33455788999999999999999887533                                   


Q ss_pred             ----CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         73 ----DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        73 ----~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                          .+|+|+|+|+.+++.|+.|+..+++. .++++++|+  .+++..   .+||+|++||||+..
T Consensus       253 ~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~--~~l~~~---~~fD~Iv~NPPYG~r  313 (384)
T 3ldg_A          253 YDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRL--QDFKTN---KINGVLISNPPYGER  313 (384)
T ss_dssp             TTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCG--GGCCCC---CCSCEEEECCCCTTT
T ss_pred             ccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh--HHCCcc---CCcCEEEECCchhhc
Confidence                35999999999999999999999987 599999999  777654   589999999999976

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.61  E-value=5.3e-15  Score=119.43  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=68.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC--C-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG--A-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~--~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      .+|.+|||+|||+|..+..+++..  + .+|+|+|+|+.|++.|++++...+.. +++++++|+  .+++.    +.||+
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~--~~~~~----~~~d~  142 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI--RDIAI----ENASM  142 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCT--TTCCC----CSEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccc--ccccc----ccccc
Confidence            478899999999999999988863  2 48999999999999999999887765 799999999  77765    57999


Q ss_pred             EEEcCCCCCC
Q psy17460        124 VIMNPPFGTR  133 (216)
Q Consensus       124 vi~npp~~~~  133 (216)
                      |+++-.+++.
T Consensus       143 v~~~~~l~~~  152 (261)
T 4gek_A          143 VVLNFTLQFL  152 (261)
T ss_dssp             EEEESCGGGS
T ss_pred             ceeeeeeeec
Confidence            9998776654

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.61  E-value=3.8e-15  Score=121.01  Aligned_cols=93  Identities=19%  Similarity=0.265  Sum_probs=79.3

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .+|++|||+|||+|.+++.+++.|+.+|+++|+|+.+++.++.|++.|++. +++++++|+  .+++..   +.||.|++
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~--~~~~~~---~~~D~Vi~  198 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN--RDFPGE---NIADRILM  198 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT--TTCCCC---SCEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcH--HHhccc---cCCCEEEE
Confidence            378999999999999999999998789999999999999999999999987 599999999  887654   68999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      |||+...      .++..++...+.
T Consensus       199 ~~p~~~~------~~l~~a~~~lk~  217 (278)
T 3k6r_A          199 GYVVRTH------EFIPKALSIAKD  217 (278)
T ss_dssp             CCCSSGG------GGHHHHHHHEEE
T ss_pred             CCCCcHH------HHHHHHHHHcCC
Confidence            9997643      355555554433

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.61  E-value=1.9e-14  Score=113.94  Aligned_cols=144  Identities=13%  Similarity=0.142  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHhhcccCCCcc-cCccc-------cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CC
Q psy17460          3 LKHIEQYLQQLTFNFSNPKV-HLEQY-------HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-AD   73 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~~~~~-------~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~   73 (216)
                      .+.+++++.+. .....+.. .+.++       .........+...+...    ++.+|||+|||+|..+..++... ..
T Consensus        22 ~~~l~~yl~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~vLDiG~G~G~~~~~la~~~~~~   96 (232)
T 3ntv_A           22 DDLNKKYLIDL-HQHQNSSIEVLREFAEVNEVPIVDRLTLDLIKQLIRMN----NVKNILEIGTAIGYSSMQFASISDDI   96 (232)
T ss_dssp             HHHHHHHHHHH-HGGGCCGGGGHHHHHHHTTCCCCCHHHHHHHHHHHHHH----TCCEEEEECCSSSHHHHHHHTTCTTC
T ss_pred             CHHHHHHHHHh-CCCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc----CCCEEEEEeCchhHHHHHHHHhCCCC
Confidence            46677777776 33333322 12221       13445555555554443    67899999999999999998854 37


Q ss_pred             EEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccc-ccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460         74 FCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDS-SVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus        74 ~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~-~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      +|+++|+++.+++.|+.++...++. +++++.+|+  .+... .. .++||+|+++.+...                   
T Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~~-~~~fD~V~~~~~~~~-------------------  154 (232)
T 3ntv_A           97 HVTTIERNETMIQYAKQNLATYHFENQVRIIEGNA--LEQFENVN-DKVYDMIFIDAAKAQ-------------------  154 (232)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCG--GGCHHHHT-TSCEEEEEEETTSSS-------------------
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH--HHHHHhhc-cCCccEEEEcCcHHH-------------------
Confidence            9999999999999999999998886 799999999  66533 11 278999999876431                   


Q ss_pred             eEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        152 VYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       152 ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                               ...+++.+.++|+| +|.+++..
T Consensus       155 ---------~~~~l~~~~~~Lkp-gG~lv~d~  176 (232)
T 3ntv_A          155 ---------SKKFFEIYTPLLKH-QGLVITDN  176 (232)
T ss_dssp             ---------HHHHHHHHGGGEEE-EEEEEEEC
T ss_pred             ---------HHHHHHHHHHhcCC-CeEEEEee
Confidence                     23455667778888 88888743

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.61  E-value=4.3e-14  Score=109.88  Aligned_cols=95  Identities=15%  Similarity=0.171  Sum_probs=77.2

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEe
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILF  105 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~  105 (216)
                      ..+...+...++..+.    ..++.+|||+|||+|.++..+++. ..+|+|+|+++++++.|++++..++++ +++++.+
T Consensus        37 ~~~~~~~~~~~l~~l~----~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~  111 (204)
T 3njr_A           37 QITKSPMRALTLAALA----PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG  111 (204)
T ss_dssp             CCCCHHHHHHHHHHHC----CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCCcHHHHHHHHHhcC----CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeC
Confidence            4455666666655553    347889999999999999999988 459999999999999999999999987 8999999


Q ss_pred             cccccccccccccCcccEEEEcCCC
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      |+  .+.....  +.||+|++++..
T Consensus       112 d~--~~~~~~~--~~~D~v~~~~~~  132 (204)
T 3njr_A          112 TA--PAALADL--PLPEAVFIGGGG  132 (204)
T ss_dssp             CT--TGGGTTS--CCCSEEEECSCC
T ss_pred             ch--hhhcccC--CCCCEEEECCcc
Confidence            99  6633222  589999998743

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.61  E-value=1.9e-14  Score=115.08  Aligned_cols=122  Identities=13%  Similarity=0.121  Sum_probs=93.0

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEec
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFE  106 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d  106 (216)
                      +........++..+.   ...++.+|||+|||+|..+..++..++.+|+|+|+++.+++.++.++...++. +++++.+|
T Consensus        28 ~~~~~~~~~~l~~l~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d  104 (257)
T 3f4k_A           28 PGSPEATRKAVSFIN---ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGS  104 (257)
T ss_dssp             SCCHHHHHHHHTTSC---CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             CCCHHHHHHHHHHHh---cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence            444455544444332   22467899999999999999999986669999999999999999999988886 49999999


Q ss_pred             ccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      +  .+++...  ++||+|+++..+++.                          +...+++.+.++|+| +|.+++..
T Consensus       105 ~--~~~~~~~--~~fD~v~~~~~l~~~--------------------------~~~~~l~~~~~~L~p-gG~l~~~~  150 (257)
T 3f4k_A          105 M--DNLPFQN--EELDLIWSEGAIYNI--------------------------GFERGMNEWSKYLKK-GGFIAVSE  150 (257)
T ss_dssp             T--TSCSSCT--TCEEEEEEESCSCCC--------------------------CHHHHHHHHHTTEEE-EEEEEEEE
T ss_pred             h--hhCCCCC--CCEEEEEecChHhhc--------------------------CHHHHHHHHHHHcCC-CcEEEEEE
Confidence            9  7766543  799999999887654                          123455666677777 77776644

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.61  E-value=8.6e-15  Score=111.58  Aligned_cols=81  Identities=22%  Similarity=0.231  Sum_probs=66.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++..+++++++++.+|+  ..+.... .++||+|++|
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~--~~l~~~~-~~~fD~v~~~   96 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGH--ENLDHYV-REPIRAAIFN   96 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCG--GGGGGTC-CSCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcH--HHHHhhc-cCCcCEEEEe
Confidence            46889999999999999999988 469999999999999999999988877899999888  5532111 2689999999


Q ss_pred             CCCCC
Q psy17460        128 PPFGT  132 (216)
Q Consensus       128 pp~~~  132 (216)
                      ++|..
T Consensus        97 ~~~~~  101 (185)
T 3mti_A           97 LGYLP  101 (185)
T ss_dssp             EC---
T ss_pred             CCCCC
Confidence            87753

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.61  E-value=5.4e-15  Score=118.43  Aligned_cols=131  Identities=12%  Similarity=0.015  Sum_probs=87.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccc---ccccc-cCccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSL---DSSVF-KQKVD  122 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~---~~~~~-~~~~D  122 (216)
                      ++.+|||+|||+|.++..++... ..+|+|+|+++.+++.|+.++..+++. +++++.+|+  .+.   +.... .++||
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~~~~~~~~~fD  142 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ--KTLLMDALKEESEIIYD  142 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TCSSTTTSTTCCSCCBS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcch--hhhhhhhhhcccCCccc
Confidence            56799999999999998887763 369999999999999999999988886 499999998  442   11110 15899


Q ss_pred             EEEEcCCCCCCC-CCCC------------HHHH---HHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460        123 TVIMNPPFGTRN-CGID------------LAFV---QYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD  186 (216)
Q Consensus       123 ~vi~npp~~~~~-~~~~------------~~~~---~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  186 (216)
                      +|++||||+... ....            ..++   .+++++++.++.+      ..++..+..++.+ .|.+..+.+..
T Consensus       143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~------~~~~~~~~~~l~~-~g~~~~~~~~~  215 (254)
T 2h00_A          143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV------KRIIHDSLQLKKR-LRWYSCMLGKK  215 (254)
T ss_dssp             EEEECCCCC-------------------------CTTTTHHHHTHHHHH------HHHHHHHHHHGGG-BSCEEEEESST
T ss_pred             EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE------HHHHHHHHhcccc-eEEEEECCCCh
Confidence            999999998652 1000            0011   1223333332211      2455556667788 88887777655


Q ss_pred             CC
Q psy17460        187 LN  188 (216)
Q Consensus       187 ~~  188 (216)
                      ..
T Consensus       216 ~~  217 (254)
T 2h00_A          216 CS  217 (254)
T ss_dssp             TS
T ss_pred             hH
Confidence            44

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.61  E-value=1.2e-14  Score=125.68  Aligned_cols=105  Identities=25%  Similarity=0.329  Sum_probs=88.6

Q ss_pred             CcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc--------------CCCEEEEEeCChHHH
Q psy17460         20 PKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL--------------GADFCFALECDKEIL   85 (216)
Q Consensus        20 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~--------------~~~~v~~iD~~~~~~   85 (216)
                      .+...++|.||..+.+.|+..+..    .++.+|+|+|||+|.+++.+++.              ...+++|+|+++.++
T Consensus       146 ~~~~~G~fyTP~~v~~~mv~~l~~----~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~  221 (445)
T 2okc_A          146 KKSGAGQYFTPRPLIQAMVDCINP----QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV  221 (445)
T ss_dssp             TTTCCGGGCCCHHHHHHHHHHHCC----CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH
T ss_pred             ccccCCcccCcHHHHHHHHHHhCC----CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHH
Confidence            455688999999999999887753    36789999999999999887764              125799999999999


Q ss_pred             HHHHHhhhHhCCC--ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         86 DIFIDNKNEFEIT--NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        86 ~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +.|+.|+...++.  +++++++|+  ...+..   .+||+|++||||+..
T Consensus       222 ~lA~~nl~l~g~~~~~~~i~~gD~--l~~~~~---~~fD~Iv~NPPf~~~  266 (445)
T 2okc_A          222 TLASMNLYLHGIGTDRSPIVCEDS--LEKEPS---TLVDVILANPPFGTR  266 (445)
T ss_dssp             HHHHHHHHHTTCCSSCCSEEECCT--TTSCCS---SCEEEEEECCCSSCC
T ss_pred             HHHHHHHHHhCCCcCCCCEeeCCC--CCCccc---CCcCEEEECCCCCCc
Confidence            9999999888875  688999999  776543   589999999999975

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.61  E-value=8.5e-15  Score=123.98  Aligned_cols=96  Identities=24%  Similarity=0.258  Sum_probs=80.0

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEec
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFE  106 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d  106 (216)
                      ..+.++..++... .    .++.+|||+|||+|.+++.++..+. .+|+|+|+|+.+++.|+.|+..+++. +++++.+|
T Consensus       202 l~~~la~~l~~~~-~----~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D  276 (373)
T 3tm4_A          202 LKASIANAMIELA-E----LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGD  276 (373)
T ss_dssp             CCHHHHHHHHHHH-T----CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECC
T ss_pred             ccHHHHHHHHHhh-c----CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence            3556666666555 2    4788999999999999999999876 58999999999999999999999984 79999999


Q ss_pred             ccccccccccccCcccEEEEcCCCCCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +  .+++...  ++||+|++||||+..
T Consensus       277 ~--~~~~~~~--~~fD~Ii~npPyg~r  299 (373)
T 3tm4_A          277 A--TQLSQYV--DSVDFAISNLPYGLK  299 (373)
T ss_dssp             G--GGGGGTC--SCEEEEEEECCCC--
T ss_pred             h--hhCCccc--CCcCEEEECCCCCcc
Confidence            9  7766433  689999999999976

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.61  E-value=2.9e-15  Score=127.56  Aligned_cols=96  Identities=19%  Similarity=0.307  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC---------------------------------------C
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA---------------------------------------D   73 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~---------------------------------------~   73 (216)
                      +.+.++..+.......++..|||++||+|+++++++..+.                                       .
T Consensus       185 l~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  264 (393)
T 3k0b_A          185 IKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL  264 (393)
T ss_dssp             CCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence            3444444444444556788999999999999999887533                                       3


Q ss_pred             EEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         74 FCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        74 ~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +|+|+|+|+.+++.|+.|+..+++. +++++++|+  .+++..   .+||+|++||||+..
T Consensus       265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~--~~~~~~---~~fD~Iv~NPPYg~r  320 (393)
T 3k0b_A          265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQV--ADFQTE---DEYGVVVANPPYGER  320 (393)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCG--GGCCCC---CCSCEEEECCCCCCS
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh--HhCCCC---CCCCEEEECCCCccc
Confidence            5999999999999999999999986 599999999  777654   689999999999976

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.61  E-value=2e-15  Score=129.31  Aligned_cols=96  Identities=22%  Similarity=0.324  Sum_probs=75.3

Q ss_pred             CcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460         20 PKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEI   97 (216)
Q Consensus        20 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~   97 (216)
                      .+...++|.||..+.+.++..+..    .++.+|||+|||+|.++..++++  ...+++|+|+++.+++.|         
T Consensus        14 ~~~~~g~~~TP~~l~~~~~~~~~~----~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------   80 (421)
T 2ih2_A           14 APRSLGRVETPPEVVDFMVSLAEA----PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------   80 (421)
T ss_dssp             -------CCCCHHHHHHHHHHCCC----CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------
T ss_pred             hcccCceEeCCHHHHHHHHHhhcc----CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------
Confidence            456689999999999999887643    35669999999999999998875  336999999999998776         


Q ss_pred             CceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         98 TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        98 ~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      .+++++.+|+  .+....   ++||+|++||||...
T Consensus        81 ~~~~~~~~D~--~~~~~~---~~fD~Ii~NPPy~~~  111 (421)
T 2ih2_A           81 PWAEGILADF--LLWEPG---EAFDLILGNPPYGIV  111 (421)
T ss_dssp             TTEEEEESCG--GGCCCS---SCEEEEEECCCCCCB
T ss_pred             CCCcEEeCCh--hhcCcc---CCCCEEEECcCccCc
Confidence            2789999999  776543   689999999999876

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.60  E-value=5.3e-15  Score=125.75  Aligned_cols=82  Identities=17%  Similarity=0.218  Sum_probs=70.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEeccccccccccc--ccCcccEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSV--FKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~--~~~~~D~v  124 (216)
                      ++++|||+|||+|.+++.++..++.+|+|+|+|+.+++.|+.|+..++++  +++++.+|+  .+.....  ..++||+|
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~--~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV--FDYFKYARRHHLTYDII  289 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH--HHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCH--HHHHHHHHHhCCCccEE
Confidence            67899999999999999999987779999999999999999999999987  799999999  6643221  12589999


Q ss_pred             EEcCCCCC
Q psy17460        125 IMNPPFGT  132 (216)
Q Consensus       125 i~npp~~~  132 (216)
                      ++|||+..
T Consensus       290 i~DPP~~~  297 (385)
T 2b78_A          290 IIDPPSFA  297 (385)
T ss_dssp             EECCCCC-
T ss_pred             EECCCCCC
Confidence            99999953

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.60  E-value=3.9e-15  Score=126.49  Aligned_cols=95  Identities=21%  Similarity=0.342  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC---------------------------------------CE
Q psy17460         34 AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA---------------------------------------DF   74 (216)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~---------------------------------------~~   74 (216)
                      .+.++..+.......++..|||++||+|.++++++..+.                                       .+
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            344444444444556788999999999999999887632                                       36


Q ss_pred             EEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         75 CFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        75 v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      |+|+|+|+.+++.|+.|+..+++. ++++.++|+  .+++..   ++||+|++||||+..
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~--~~l~~~---~~~D~Iv~NPPyg~r  314 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDA--TQFKSE---DEFGFIITNPPYGER  314 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCG--GGCCCS---CBSCEEEECCCCCCS
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh--hhcCcC---CCCcEEEECCCCcCc
Confidence            999999999999999999999986 699999999  776653   689999999999976

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.59  E-value=3.4e-14  Score=114.49  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=92.1

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEec
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFE  106 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d  106 (216)
                      +........++..+.   ...++.+|||+|||+|.++..++..+..+|+|+|+++.+++.++.++...+++ +++++.+|
T Consensus        28 ~~~~~~~~~~l~~l~---~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  104 (267)
T 3kkz_A           28 PGSPEVTLKALSFID---NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGS  104 (267)
T ss_dssp             SCCHHHHHHHHTTCC---CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             CCCHHHHHHHHHhcc---cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcC
Confidence            334444444444333   13468899999999999999999885579999999999999999999988875 69999999


Q ss_pred             ccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      +  .+++...  ++||+|+++.++++.                          +...+++.+.++|+| +|.+++..
T Consensus       105 ~--~~~~~~~--~~fD~i~~~~~~~~~--------------------------~~~~~l~~~~~~Lkp-gG~l~~~~  150 (267)
T 3kkz_A          105 M--DDLPFRN--EELDLIWSEGAIYNI--------------------------GFERGLNEWRKYLKK-GGYLAVSE  150 (267)
T ss_dssp             T--TSCCCCT--TCEEEEEESSCGGGT--------------------------CHHHHHHHHGGGEEE-EEEEEEEE
T ss_pred             h--hhCCCCC--CCEEEEEEcCCceec--------------------------CHHHHHHHHHHHcCC-CCEEEEEE
Confidence            9  6766433  799999999887644                          123455666677777 77776644

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.58  E-value=3.2e-14  Score=110.55  Aligned_cols=117  Identities=13%  Similarity=0.034  Sum_probs=92.8

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN  108 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  108 (216)
                      +...+...++..+    ...++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++.++...+.++++++.+|+ 
T Consensus        61 ~~~~~~~~~~~~l----~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-  134 (210)
T 3lbf_A           61 SQPYMVARMTELL----ELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDG-  134 (210)
T ss_dssp             CCHHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-
T ss_pred             CCHHHHHHHHHhc----CCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCc-
Confidence            3445555555544    33578899999999999999998885 59999999999999999999988887899999999 


Q ss_pred             ccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460        109 EKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD  186 (216)
Q Consensus       109 ~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  186 (216)
                       .+.....  ++||+|+++.++++..                               ..+.+.|+| +|++++..+-.
T Consensus       135 -~~~~~~~--~~~D~i~~~~~~~~~~-------------------------------~~~~~~L~p-gG~lv~~~~~~  177 (210)
T 3lbf_A          135 -WQGWQAR--APFDAIIVTAAPPEIP-------------------------------TALMTQLDE-GGILVLPVGEE  177 (210)
T ss_dssp             -GGCCGGG--CCEEEEEESSBCSSCC-------------------------------THHHHTEEE-EEEEEEEECSS
T ss_pred             -ccCCccC--CCccEEEEccchhhhh-------------------------------HHHHHhccc-CcEEEEEEcCC
Confidence             6654432  7999999987765441                               125678899 99999987763

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.58  E-value=9.9e-15  Score=119.61  Aligned_cols=104  Identities=21%  Similarity=0.290  Sum_probs=82.0

Q ss_pred             CCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460         19 NPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI   97 (216)
Q Consensus        19 ~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~   97 (216)
                      .++..++| |.+...+.+.++..+..    .++.+|||+|||+|.++..++..+ .+|+|+|+|+++++.++.++...  
T Consensus        23 ~~~k~~GQnfL~d~~i~~~Iv~~l~~----~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~--   95 (295)
T 3gru_A           23 KPKKKLGQCFLIDKNFVNKAVESANL----TKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELY--   95 (295)
T ss_dssp             -------CCEECCHHHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHC--
T ss_pred             CCccccCccccCCHHHHHHHHHhcCC----CCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccC--
Confidence            56777888 88888888888877643    478899999999999999999885 59999999999999999998732  


Q ss_pred             CceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         98 TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        98 ~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      .+++++.+|+  .+.++..  .+||.|++|+||+..
T Consensus        96 ~~v~vi~gD~--l~~~~~~--~~fD~Iv~NlPy~is  127 (295)
T 3gru_A           96 NNIEIIWGDA--LKVDLNK--LDFNKVVANLPYQIS  127 (295)
T ss_dssp             SSEEEEESCT--TTSCGGG--SCCSEEEEECCGGGH
T ss_pred             CCeEEEECch--hhCCccc--CCccEEEEeCccccc
Confidence            3899999999  7665543  579999999999754

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.58  E-value=3.2e-14  Score=114.13  Aligned_cols=101  Identities=10%  Similarity=-0.012  Sum_probs=78.1

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ...++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++.++...+.++++++.+|+  .++++..  ++||+|+
T Consensus        34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~--~~l~~~~--~~fD~V~  108 (260)
T 1vl5_A           34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA--EQMPFTD--ERFHIVT  108 (260)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC---CCCSCT--TCEEEEE
T ss_pred             CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH--HhCCCCC--CCEEEEE
Confidence            334788999999999999999998875 9999999999999999999888877899999999  6666543  7999999


Q ss_pred             EcCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460        126 MNPPFGTR-NCGIDLAFVQYAADISKV  151 (216)
Q Consensus       126 ~npp~~~~-~~~~~~~~~~~~l~~~~~  151 (216)
                      ++..+++. +.....+.+.+++++++.
T Consensus       109 ~~~~l~~~~d~~~~l~~~~r~LkpgG~  135 (260)
T 1vl5_A          109 CRIAAHHFPNPASFVSEAYRVLKKGGQ  135 (260)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             EhhhhHhcCCHHHHHHHHHHHcCCCCE
Confidence            99877665 222223333444444444

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.58  E-value=1.9e-14  Score=121.58  Aligned_cols=76  Identities=25%  Similarity=0.328  Sum_probs=67.0

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .+|++|||+|||||.+++.+++.|+.+|+|+|.++ +++.|++++..+++. +|+++.+|+++.+++     ++||+|++
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-----e~~Dvivs  155 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-----EQVDAIVS  155 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-----SCEEEEEC
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-----ccccEEEe
Confidence            47899999999999999999999999999999996 889999999999987 699999999444433     68999999


Q ss_pred             cCC
Q psy17460        127 NPP  129 (216)
Q Consensus       127 npp  129 (216)
                      ...
T Consensus       156 E~~  158 (376)
T 4hc4_A          156 EWM  158 (376)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            764

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.57  E-value=6.9e-15  Score=116.92  Aligned_cols=80  Identities=14%  Similarity=0.135  Sum_probs=67.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      +|.+|||+|||+|..+..+++..+.++++||+|+++++.|+++....+. ++.++.+|+  .+.......++||.|++|+
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a--~~~~~~~~~~~FD~i~~D~  136 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLW--EDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCH--HHHGGGSCTTCEEEEEECC
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehH--HhhcccccccCCceEEEee
Confidence            7889999999999999999888667899999999999999999887776 799999999  5544333337899999987


Q ss_pred             CCC
Q psy17460        129 PFG  131 (216)
Q Consensus       129 p~~  131 (216)
                      ...
T Consensus       137 ~~~  139 (236)
T 3orh_A          137 YPL  139 (236)
T ss_dssp             CCC
T ss_pred             eec
Confidence            543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.57  E-value=1e-13  Score=111.74  Aligned_cols=98  Identities=11%  Similarity=0.075  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEK  110 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~  110 (216)
                      .....+...+...+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++.++...++. +++++.+|+  .
T Consensus        44 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~  121 (273)
T 3bus_A           44 DATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADA--M  121 (273)
T ss_dssp             HHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--T
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc--c
Confidence            3444555566655565678899999999999999988764469999999999999999999888875 699999999  6


Q ss_pred             ccccccccCcccEEEEcCCCCCC
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +.+...  ++||+|+++..+++.
T Consensus       122 ~~~~~~--~~fD~v~~~~~l~~~  142 (273)
T 3bus_A          122 DLPFED--ASFDAVWALESLHHM  142 (273)
T ss_dssp             SCCSCT--TCEEEEEEESCTTTS
T ss_pred             cCCCCC--CCccEEEEechhhhC
Confidence            666543  689999999888765

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.57  E-value=6e-14  Score=109.56  Aligned_cols=93  Identities=14%  Similarity=0.188  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-----ceEEEEec
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-----NCDAILFE  106 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-----~v~~~~~d  106 (216)
                      ..+.++..+..    .++.+|||+|||+|.++..+++.++ .+++|+|+|+.+++.++.++...++.     +++++.+|
T Consensus        17 ~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (217)
T 3jwh_A           17 RMNGVVAALKQ----SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA   92 (217)
T ss_dssp             HHHHHHHHHHH----TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred             HHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCC
Confidence            33444444443    3678999999999999999998765 79999999999999999998877765     69999999


Q ss_pred             ccccccccccccCcccEEEEcCCCCCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +  ...+...  ++||+|+++..+++.
T Consensus        93 ~--~~~~~~~--~~fD~v~~~~~l~~~  115 (217)
T 3jwh_A           93 L--TYQDKRF--HGYDAATVIEVIEHL  115 (217)
T ss_dssp             T--TSCCGGG--CSCSEEEEESCGGGC
T ss_pred             c--ccccccC--CCcCEEeeHHHHHcC
Confidence            9  6555433  689999998877654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.57  E-value=5e-14  Score=119.36  Aligned_cols=116  Identities=10%  Similarity=0.016  Sum_probs=84.5

Q ss_pred             HhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhh-------HhCC--CceEEEEecccccc
Q psy17460         42 QNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKN-------EFEI--TNCDAILFEINEKS  111 (216)
Q Consensus        42 ~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~-------~~~~--~~v~~~~~d~~~~~  111 (216)
                      ...+...++.+|||+|||+|.+++.++.. +..+|+|||+++.+++.|+.++.       .+++  .++++++||+  .+
T Consensus       166 l~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~--~~  243 (438)
T 3uwp_A          166 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF--LS  243 (438)
T ss_dssp             HHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT--TS
T ss_pred             HHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc--cC
Confidence            33335568899999999999999988865 55579999999999999988653       3454  3899999999  77


Q ss_pred             cccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460        112 LDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD  186 (216)
Q Consensus       112 ~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  186 (216)
                      .++...-..||+|++|++|+..                          +....+....+.|+| +|+++.-..+.
T Consensus       244 lp~~d~~~~aDVVf~Nn~~F~p--------------------------dl~~aL~Ei~RvLKP-GGrIVssE~f~  291 (438)
T 3uwp_A          244 EEWRERIANTSVIFVNNFAFGP--------------------------EVDHQLKERFANMKE-GGRIVSSKPFA  291 (438)
T ss_dssp             HHHHHHHHTCSEEEECCTTCCH--------------------------HHHHHHHHHHTTSCT-TCEEEESSCSS
T ss_pred             CccccccCCccEEEEcccccCc--------------------------hHHHHHHHHHHcCCC-CcEEEEeeccc
Confidence            6653211379999999987522                          122333445677899 88888754444

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.56  E-value=2.3e-14  Score=116.35  Aligned_cols=99  Identities=19%  Similarity=0.160  Sum_probs=77.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|.+++.++..+ ..+|+|+|+++.+++.|++|+..++++++.++.+|+  .+.+.   .++||+|++
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~--~~~~~---~~~~D~Vi~  192 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADN--RDVEL---KDVADRVIM  192 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCG--GGCCC---TTCEEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECCh--HHcCc---cCCceEEEE
Confidence            468899999999999999999874 479999999999999999999999988899999999  66532   268999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCceEE
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKVVYS  154 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~ly~  154 (216)
                      |||+..   ..........+++++.+|.
T Consensus       193 d~p~~~---~~~l~~~~~~LkpgG~l~~  217 (272)
T 3a27_A          193 GYVHKT---HKFLDKTFEFLKDRGVIHY  217 (272)
T ss_dssp             CCCSSG---GGGHHHHHHHEEEEEEEEE
T ss_pred             CCcccH---HHHHHHHHHHcCCCCEEEE
Confidence            999732   1222233344455554443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.56  E-value=7.6e-14  Score=108.95  Aligned_cols=82  Identities=16%  Similarity=0.205  Sum_probs=69.7

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|.++..++...+ .+++|+|+++.+++.|+.++..+++++++++.+|+  .+++.....++||+|+++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG--SDLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS--SCGGGTSCTTCCSEEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCH--HHHHhhcCCCCCCEEEEE
Confidence            577999999999999999988764 69999999999999999999988887899999999  665411122689999999


Q ss_pred             CCCCC
Q psy17460        128 PPFGT  132 (216)
Q Consensus       128 pp~~~  132 (216)
                      +|..+
T Consensus       119 ~~~~~  123 (214)
T 1yzh_A          119 FSDPW  123 (214)
T ss_dssp             SCCCC
T ss_pred             CCCCc
Confidence            88654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.56  E-value=6.9e-14  Score=111.67  Aligned_cols=119  Identities=12%  Similarity=0.001  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccc
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEIN  108 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~  108 (216)
                      .....+.++..+    ...++.+|||+|||+|.++..++.....+|+|+|+++.+++.++.++...++. +++++.+|+ 
T Consensus        21 ~~~~~~~l~~~~----~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~-   95 (256)
T 1nkv_A           21 TEEKYATLGRVL----RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA-   95 (256)
T ss_dssp             CHHHHHHHHHHT----CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC-
T ss_pred             CHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh-
Confidence            344444454443    33578899999999999999888764458999999999999999999888875 799999999 


Q ss_pred             ccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        109 EKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       109 ~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                       .+.+..   ++||+|++...+++..                         +...+++.+.++|+| +|.+++..
T Consensus        96 -~~~~~~---~~fD~V~~~~~~~~~~-------------------------~~~~~l~~~~r~Lkp-gG~l~~~~  140 (256)
T 1nkv_A           96 -AGYVAN---EKCDVAACVGATWIAG-------------------------GFAGAEELLAQSLKP-GGIMLIGE  140 (256)
T ss_dssp             -TTCCCS---SCEEEEEEESCGGGTS-------------------------SSHHHHHHHTTSEEE-EEEEEEEE
T ss_pred             -HhCCcC---CCCCEEEECCChHhcC-------------------------CHHHHHHHHHHHcCC-CeEEEEec
Confidence             776652   7999999977665431                         224555666677777 77766643

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.56  E-value=1.2e-13  Score=105.90  Aligned_cols=104  Identities=14%  Similarity=0.123  Sum_probs=83.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|..+..++..+. +++|+|+++.+++.++.++...+.++++++.+|+  .+.+..   ++||+|+++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~---~~~D~v~~~  104 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDL--NNLTFD---RQYDFILST  104 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCG--GGCCCC---CCEEEEEEE
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcch--hhCCCC---CCceEEEEc
Confidence            4678999999999999999998865 9999999999999999999888877899999999  666552   799999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA  181 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~  181 (216)
                      .++++...                       .....+++.+.++|+| +|.+++
T Consensus       105 ~~l~~~~~-----------------------~~~~~~l~~~~~~L~~-gG~l~~  134 (199)
T 2xvm_A          105 VVLMFLEA-----------------------KTIPGLIANMQRCTKP-GGYNLI  134 (199)
T ss_dssp             SCGGGSCG-----------------------GGHHHHHHHHHHTEEE-EEEEEE
T ss_pred             chhhhCCH-----------------------HHHHHHHHHHHHhcCC-CeEEEE
Confidence            88775421                       1234556666777777 777554

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.56  E-value=2e-13  Score=111.35  Aligned_cols=105  Identities=11%  Similarity=0.137  Sum_probs=83.8

Q ss_pred             cCCCCCCEEEEecCCCCHhH-HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460         45 YNDIDGKTVLDLGCGSGILT-FGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        45 ~~~~~~~~vlD~g~GtG~~~-~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      +...++++|||+|||+|.++ +.+++...++|+|+|+|+++++.|++++...++.+++++.+|+  .+++ .   ++||+
T Consensus       118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa--~~l~-d---~~FDv  191 (298)
T 3fpf_A          118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE--TVID-G---LEFDV  191 (298)
T ss_dssp             TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG--GGGG-G---CCCSE
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch--hhCC-C---CCcCE
Confidence            35568999999999999766 4456543369999999999999999999988877899999999  7765 2   79999


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        124 VIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       124 vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      |+++..                            ..+...+++.+.+.|+| +|++++...
T Consensus       192 V~~~a~----------------------------~~d~~~~l~el~r~LkP-GG~Lvv~~~  223 (298)
T 3fpf_A          192 LMVAAL----------------------------AEPKRRVFRNIHRYVDT-ETRIIYRTY  223 (298)
T ss_dssp             EEECTT----------------------------CSCHHHHHHHHHHHCCT-TCEEEEEEC
T ss_pred             EEECCC----------------------------ccCHHHHHHHHHHHcCC-CcEEEEEcC
Confidence            998431                            01345677778888899 888888654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.56  E-value=4.1e-14  Score=120.67  Aligned_cols=83  Identities=19%  Similarity=0.258  Sum_probs=72.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC-C-ceEEEEeccccccccccc--ccCcccEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI-T-NCDAILFEINEKSLDSSV--FKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~-~-~v~~~~~d~~~~~~~~~~--~~~~~D~v  124 (216)
                      ++++|||+|||+|.+++.++..|+.+|+|+|+|+.+++.|+.|+..+++ + +++++.+|+  .+.....  ..++||+|
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~--~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV--FKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCH--HHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCH--HHHHHHHHhcCCCCCEE
Confidence            6789999999999999999998777999999999999999999999998 7 899999999  6654321  12689999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      ++|||+...
T Consensus       298 i~dpP~~~~  306 (396)
T 3c0k_A          298 VMDPPKFVE  306 (396)
T ss_dssp             EECCSSTTT
T ss_pred             EECCCCCCC
Confidence            999998654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.56  E-value=3.1e-14  Score=109.52  Aligned_cols=81  Identities=20%  Similarity=0.267  Sum_probs=68.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccccccccccCcccEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      .++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.|+.++..+++ ++++++.+|+  .+++.. ..++||+|
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~-~~~~fD~v   97 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH--QNMDKY-IDCPVKAV   97 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG--GGGGGT-CCSCEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH--HHHhhh-ccCCceEE
Confidence            36789999999999999998886 3 36999999999999999999999887 4899999999  665421 11689999


Q ss_pred             EEcCCCC
Q psy17460        125 IMNPPFG  131 (216)
Q Consensus       125 i~npp~~  131 (216)
                      ++|+||.
T Consensus        98 ~~~~~~~  104 (197)
T 3eey_A           98 MFNLGYL  104 (197)
T ss_dssp             EEEESBC
T ss_pred             EEcCCcc
Confidence            9999983

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.56  E-value=1e-13  Score=112.92  Aligned_cols=173  Identities=17%  Similarity=0.149  Sum_probs=93.6

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeC-ChHHHHHHHHhh-----hHhCCC-----ceEEE
Q psy17460         35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC-DKEILDIFIDNK-----NEFEIT-----NCDAI  103 (216)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~-~~~~~~~~~~~~-----~~~~~~-----~v~~~  103 (216)
                      +.++..+.......++.+|||+|||+|.+++.+++.++.+|+|+|+ ++.+++.++.|+     ..+++.     +++++
T Consensus        65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~  144 (281)
T 3bzb_A           65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV  144 (281)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred             HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence            3444444443233478899999999999999999887679999999 899999999999     444442     68888


Q ss_pred             Eeccccccccccc----ccCcccEEEE-cCCCCCCCCCCCHHHHHHHhh---c--CCceEEEeeCcc------hHHHHHH
Q psy17460        104 LFEINEKSLDSSV----FKQKVDTVIM-NPPFGTRNCGIDLAFVQYAAD---I--SKVVYSLHKTST------RESILKK  167 (216)
Q Consensus       104 ~~d~~~~~~~~~~----~~~~~D~vi~-npp~~~~~~~~~~~~~~~~l~---~--~~~ly~~~~~~~------~~~~~~~  167 (216)
                      ..|.  .+.....    ..++||+|++ +..|+..+.....+.+...++   +  ++.++.++....      ...+++.
T Consensus       145 ~~~~--~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~  222 (281)
T 3bzb_A          145 PYRW--GDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRL  222 (281)
T ss_dssp             ECCT--TSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHH
T ss_pred             EecC--CCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHH
Confidence            7776  3321111    1268999997 666653333333445566777   6  665565554322      3344443


Q ss_pred             HHHhcC-ccceeeeeeeecCCCccccccccc-cceEEEEEEEEeecc
Q psy17460        168 IQAFKN-VEQVDVIAEMKYDLNQSYKFHKKS-LHDIEVDLLRIITSD  212 (216)
Q Consensus       168 ~~~~l~-~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~  212 (216)
                      +.+. + . ....+.+... ....|..+... ..+.++.+++..|..
T Consensus       223 l~~~-G~f-~v~~~~~~~~-~~~~f~~~~~~~~~r~~V~~~~l~~~~  266 (281)
T 3bzb_A          223 VNAD-GAL-IAEPWLSPLQ-MDPMFPDDPGDVCIRGQVHRWRLRWRS  266 (281)
T ss_dssp             HHHS-TTE-EEEEEECCC-------------------CEEEEEEEC-
T ss_pred             HHhc-CCE-EEEEeccccc-cccccccCCcchhccceEEEEEEEccc
Confidence            4433 2 2 1122222221 12334344333 345677778777653

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.55  E-value=5.5e-14  Score=109.87  Aligned_cols=109  Identities=15%  Similarity=0.159  Sum_probs=85.0

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-----ceEEEEecccccccccccccCcc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-----NCDAILFEINEKSLDSSVFKQKV  121 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~~  121 (216)
                      .++.+|||+|||+|.++..++..++ .+++|+|+|+.+++.++.++...++.     +++++.+|+  ...+...  ++|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~~~~~~--~~f  103 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL--VYRDKRF--SGY  103 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS--SSCCGGG--TTC
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc--ccccccc--CCC
Confidence            3678999999999999999998765 79999999999999999998776654     699999999  6655433  799


Q ss_pred             cEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        122 DTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       122 D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      |+|+++..+++...                       .....+++.+.++|+| +|.++....
T Consensus       104 D~V~~~~~l~~~~~-----------------------~~~~~~l~~~~~~Lkp-gG~~i~~~~  142 (219)
T 3jwg_A          104 DAATVIEVIEHLDE-----------------------NRLQAFEKVLFEFTRP-QTVIVSTPN  142 (219)
T ss_dssp             SEEEEESCGGGCCH-----------------------HHHHHHHHHHHTTTCC-SEEEEEEEB
T ss_pred             CEEEEHHHHHhCCH-----------------------HHHHHHHHHHHHhhCC-CEEEEEccc
Confidence            99999877664410                       0123566677788888 776665443

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.55  E-value=7.8e-14  Score=108.36  Aligned_cols=81  Identities=16%  Similarity=0.208  Sum_probs=69.3

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++ +|||+|||+|.++..++.....+++|+|+++.+++.++.++...+.. +++++.+|+  .+.+...  ++||+|++
T Consensus        43 ~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~--~~~D~v~~  117 (219)
T 3dlc_A           43 TAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV--HNIPIED--NYADLIVS  117 (219)
T ss_dssp             CEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT--TBCSSCT--TCEEEEEE
T ss_pred             CCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCH--HHCCCCc--ccccEEEE
Confidence            344 99999999999999998873369999999999999999999988875 799999999  6665443  78999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      +..+++.
T Consensus       118 ~~~l~~~  124 (219)
T 3dlc_A          118 RGSVFFW  124 (219)
T ss_dssp             ESCGGGC
T ss_pred             CchHhhc
Confidence            9887654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.55  E-value=1.6e-14  Score=118.85  Aligned_cols=105  Identities=17%  Similarity=0.191  Sum_probs=77.1

Q ss_pred             CCCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC
Q psy17460         18 SNPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE   96 (216)
Q Consensus        18 ~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~   96 (216)
                      ..++..++| |.+...+.+.++..+..    .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.++.++...+
T Consensus        14 ~~~~k~~Gq~fl~~~~i~~~i~~~~~~----~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~   88 (299)
T 2h1r_A           14 RENLYFQGQHLLKNPGILDKIIYAAKI----KSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEG   88 (299)
T ss_dssp             ---------CEECCHHHHHHHHHHHCC----CTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTT
T ss_pred             ccchhccccceecCHHHHHHHHHhcCC----CCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcC
Confidence            445667787 55677777777776532    478899999999999999999885 499999999999999999998777


Q ss_pred             CCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         97 ITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        97 ~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      .++++++.+|+  .+.+.    .+||+|++|+||...
T Consensus        89 ~~~v~~~~~D~--~~~~~----~~~D~Vv~n~py~~~  119 (299)
T 2h1r_A           89 YNNLEVYEGDA--IKTVF----PKFDVCTANIPYKIS  119 (299)
T ss_dssp             CCCEEC----C--CSSCC----CCCSEEEEECCGGGH
T ss_pred             CCceEEEECch--hhCCc----ccCCEEEEcCCcccc
Confidence            66899999999  76654    489999999999754

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.55  E-value=1.3e-13  Score=112.21  Aligned_cols=104  Identities=22%  Similarity=0.300  Sum_probs=85.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++.++..+++ +++++.+|+  .+.+..   ++||+|+++.
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~--~~~~~~---~~fD~i~~~~  192 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL-NISTALYDI--NAANIQ---ENYDFIVSTV  192 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCG--GGCCCC---SCEEEEEECS
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC-ceEEEEecc--cccccc---CCccEEEEcc
Confidence            688999999999999999999876 999999999999999999999888 899999999  766552   7999999999


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      ++++...                       .....+++.+.++|+| +|.+++..
T Consensus       193 ~~~~~~~-----------------------~~~~~~l~~~~~~Lkp-gG~l~i~~  223 (286)
T 3m70_A          193 VFMFLNR-----------------------ERVPSIIKNMKEHTNV-GGYNLIVA  223 (286)
T ss_dssp             SGGGSCG-----------------------GGHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred             chhhCCH-----------------------HHHHHHHHHHHHhcCC-CcEEEEEE
Confidence            8875522                       1233566666777777 77755533

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.55  E-value=5.4e-14  Score=109.62  Aligned_cols=90  Identities=8%  Similarity=0.065  Sum_probs=73.2

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc
Q psy17460         36 TILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS  115 (216)
Q Consensus        36 ~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  115 (216)
                      .....+...+...++.+|||+|||+|.++..++..+. +|+|+|+++.+++.++.+....+  +++++.+|+  .+.+..
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~--~~~~~~  112 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS--HISWAATDI--LQFSTA  112 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS--SEEEEECCT--TTCCCS
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC--CeEEEEcch--hhCCCC
Confidence            3334444343445778999999999999999998864 99999999999999999987654  899999999  666632


Q ss_pred             cccCcccEEEEcCCCCCC
Q psy17460        116 VFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       116 ~~~~~~D~vi~npp~~~~  133 (216)
                         ++||+|+++..+++.
T Consensus       113 ---~~fD~v~~~~~l~~~  127 (216)
T 3ofk_A          113 ---ELFDLIVVAEVLYYL  127 (216)
T ss_dssp             ---CCEEEEEEESCGGGS
T ss_pred             ---CCccEEEEccHHHhC
Confidence               799999999887765

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.55  E-value=9.2e-14  Score=117.74  Aligned_cols=116  Identities=22%  Similarity=0.216  Sum_probs=87.5

Q ss_pred             HHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccc
Q psy17460         39 HTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVF  117 (216)
Q Consensus        39 ~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~  117 (216)
                      ..+.......++.+|||+|||+|.++..+++.|+.+|+|+|++ ++++.|++++..+++. +++++.+|+  .+++..  
T Consensus        53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~--  127 (376)
T 3r0q_C           53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSV--EDISLP--  127 (376)
T ss_dssp             HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCG--GGCCCS--
T ss_pred             HHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECch--hhcCcC--
Confidence            3333333456789999999999999999999987899999999 9999999999998886 599999999  666544  


Q ss_pred             cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        118 KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                       ++||+|++++..+....                      ......+++...++|+| +|.++...
T Consensus       128 -~~~D~Iv~~~~~~~l~~----------------------e~~~~~~l~~~~~~Lkp-gG~li~~~  169 (376)
T 3r0q_C          128 -EKVDVIISEWMGYFLLR----------------------ESMFDSVISARDRWLKP-TGVMYPSH  169 (376)
T ss_dssp             -SCEEEEEECCCBTTBTT----------------------TCTHHHHHHHHHHHEEE-EEEEESSE
T ss_pred             -CcceEEEEcChhhcccc----------------------hHHHHHHHHHHHhhCCC-CeEEEEec
Confidence             69999999874332211                      11234555566677777 77766533

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.55  E-value=1.1e-13  Score=114.08  Aligned_cols=119  Identities=11%  Similarity=0.037  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhhcC-CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccc
Q psy17460         34 AATILHTIQNNYN-DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKS  111 (216)
Q Consensus        34 ~~~~~~~~~~~~~-~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~  111 (216)
                      .+.....+...+. ..++.+|||+|||+|.++..+++....+|+|+|+++.+++.|+.++...++. +++++.+|+  .+
T Consensus       101 ~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~  178 (312)
T 3vc1_A          101 ESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM--LD  178 (312)
T ss_dssp             HHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TS
T ss_pred             HHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh--hc
Confidence            3334444555555 5578899999999999999988872248999999999999999999998886 799999999  66


Q ss_pred             cccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        112 LDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       112 ~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      .+...  ++||+|+++..+++.+                          ...+++.+.++|+| +|.+++..
T Consensus       179 ~~~~~--~~fD~V~~~~~l~~~~--------------------------~~~~l~~~~~~Lkp-gG~l~~~~  221 (312)
T 3vc1_A          179 TPFDK--GAVTASWNNESTMYVD--------------------------LHDLFSEHSRFLKV-GGRYVTIT  221 (312)
T ss_dssp             CCCCT--TCEEEEEEESCGGGSC--------------------------HHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             CCCCC--CCEeEEEECCchhhCC--------------------------HHHHHHHHHHHcCC-CcEEEEEE
Confidence            65433  7999999987765431                          34566667777777 77777644

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.55  E-value=5.3e-14  Score=124.14  Aligned_cols=112  Identities=19%  Similarity=0.191  Sum_probs=90.3

Q ss_pred             CCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc----CCCEEEEEeCChHHHHHHHHhhhH
Q psy17460         19 NPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL----GADFCFALECDKEILDIFIDNKNE   94 (216)
Q Consensus        19 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~----~~~~v~~iD~~~~~~~~~~~~~~~   94 (216)
                      ..+...++|.||..+...|+..+.......++.+|+|++||||.+.+.++..    +...++|+|+++.++..|+.|+..
T Consensus       191 ~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l  270 (542)
T 3lkd_A          191 DSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL  270 (542)
T ss_dssp             C---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH
Confidence            3456789999999999999999885322346789999999999999887765    236899999999999999999988


Q ss_pred             hCCC--ceEEEEeccccccc--ccccccCcccEEEEcCCCCCC
Q psy17460         95 FEIT--NCDAILFEINEKSL--DSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        95 ~~~~--~v~~~~~d~~~~~~--~~~~~~~~~D~vi~npp~~~~  133 (216)
                      .++.  ++.+..+|.  +..  +. ....+||+|++||||...
T Consensus       271 ~gi~~~~~~I~~gDt--L~~d~p~-~~~~~fD~IvaNPPf~~~  310 (542)
T 3lkd_A          271 HGVPIENQFLHNADT--LDEDWPT-QEPTNFDGVLMNPPYSAK  310 (542)
T ss_dssp             TTCCGGGEEEEESCT--TTSCSCC-SSCCCBSEEEECCCTTCC
T ss_pred             cCCCcCccceEecce--ecccccc-cccccccEEEecCCcCCc
Confidence            8883  689999999  655  32 122689999999999854

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.55  E-value=1.9e-14  Score=115.67  Aligned_cols=104  Identities=18%  Similarity=0.240  Sum_probs=79.5

Q ss_pred             CCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460         19 NPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI   97 (216)
Q Consensus        19 ~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~   97 (216)
                      .++..++| |-+...+.+.++..+..    .++.+|||+|||+|.++..++..+ .+|+|+|+|+++++.+++++..  .
T Consensus         2 ~~~k~~GQnFL~d~~i~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--~   74 (255)
T 3tqs_A            2 PMRKRFGQHFLHDSFVLQKIVSAIHP----QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--Q   74 (255)
T ss_dssp             -------CCEECCHHHHHHHHHHHCC----CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--C
T ss_pred             CCCCcCCcccccCHHHHHHHHHhcCC----CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--C
Confidence            35667887 66777888888877653    478899999999999999999986 5999999999999999999865  2


Q ss_pred             CceEEEEecccccccccccc--cCcccEEEEcCCCCC
Q psy17460         98 TNCDAILFEINEKSLDSSVF--KQKVDTVIMNPPFGT  132 (216)
Q Consensus        98 ~~v~~~~~d~~~~~~~~~~~--~~~~D~vi~npp~~~  132 (216)
                      .+++++.+|+  .++++...  .++|| |++|+||..
T Consensus        75 ~~v~~i~~D~--~~~~~~~~~~~~~~~-vv~NlPY~i  108 (255)
T 3tqs_A           75 KNITIYQNDA--LQFDFSSVKTDKPLR-VVGNLPYNI  108 (255)
T ss_dssp             TTEEEEESCT--TTCCGGGSCCSSCEE-EEEECCHHH
T ss_pred             CCcEEEEcch--HhCCHHHhccCCCeE-EEecCCccc
Confidence            3899999999  66654321  24688 999999963

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.55  E-value=8.4e-14  Score=105.91  Aligned_cols=95  Identities=15%  Similarity=0.183  Sum_probs=78.5

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEec
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI-TNCDAILFE  106 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d  106 (216)
                      +++..+.+.++..+.    ..++.+|||+|||+|.++..++..+ .+++++|+++.+++.++.++..++. ++++++.+|
T Consensus        16 ~~~~~~~~~~~~~~~----~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d   90 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAE----PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD   90 (192)
T ss_dssp             CCCHHHHHHHHHHHC----CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESC
T ss_pred             CChHHHHHHHHHhcC----CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecC
Confidence            667777777766653    3478899999999999999999887 6999999999999999999988887 489999999


Q ss_pred             ccccccccccccCcccEEEEcCCCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      +  .+.....  ++||+|+++++++
T Consensus        91 ~--~~~~~~~--~~~D~v~~~~~~~  111 (192)
T 1l3i_A           91 A--PEALCKI--PDIDIAVVGGSGG  111 (192)
T ss_dssp             H--HHHHTTS--CCEEEEEESCCTT
T ss_pred             H--HHhcccC--CCCCEEEECCchH
Confidence            9  5522111  4899999998865

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.55  E-value=1.3e-13  Score=110.51  Aligned_cols=79  Identities=11%  Similarity=0.130  Sum_probs=67.0

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-cccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-VFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~D~vi  125 (216)
                      .++.+|||+|||+|..++.++... ..+|+++|+++.+++.++.|+..+++.+++++.+|+  .+++.. ...++||+|+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~--~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRA--EVLAREAGHREAYARAV  156 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCH--HHHTTSTTTTTCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcH--HHhhcccccCCCceEEE
Confidence            467899999999999999988874 379999999999999999999999987899999999  665432 1126899999


Q ss_pred             EcC
Q psy17460        126 MNP  128 (216)
Q Consensus       126 ~np  128 (216)
                      ++.
T Consensus       157 s~a  159 (249)
T 3g89_A          157 ARA  159 (249)
T ss_dssp             EES
T ss_pred             ECC
Confidence            953

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.55  E-value=6.9e-14  Score=117.36  Aligned_cols=79  Identities=27%  Similarity=0.334  Sum_probs=68.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++++|||+|||+|.++..+++.+..+|+|+|++ ++++.|++++..+++. +++++.+|+  .+++...  ++||+|++
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~--~~fD~Iis  139 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKV--EEVELPV--EKVDIIIS  139 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCT--TTCCCSS--SCEEEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcH--HHccCCC--CceEEEEE
Confidence            3788999999999999999999877899999999 4999999999998886 499999999  6654432  79999999


Q ss_pred             cCCCC
Q psy17460        127 NPPFG  131 (216)
Q Consensus       127 npp~~  131 (216)
                      +++..
T Consensus       140 ~~~~~  144 (349)
T 3q7e_A          140 EWMGY  144 (349)
T ss_dssp             CCCBB
T ss_pred             ccccc
Confidence            98644

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.55  E-value=2.1e-14  Score=111.24  Aligned_cols=90  Identities=22%  Similarity=0.207  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc
Q psy17460         34 AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD  113 (216)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  113 (216)
                      ...++..+...+  .++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.|+.++..++..+++++.+|+  .+.+
T Consensus        47 ~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~  122 (205)
T 3grz_A           47 TQLAMLGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSL--LADV  122 (205)
T ss_dssp             HHHHHHHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESST--TTTC
T ss_pred             HHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccc--cccC
Confidence            334444444332  367899999999999999988886679999999999999999999988886799999999  6654


Q ss_pred             cccccCcccEEEEcCCCC
Q psy17460        114 SSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       114 ~~~~~~~~D~vi~npp~~  131 (216)
                      .    ++||+|+++++++
T Consensus       123 ~----~~fD~i~~~~~~~  136 (205)
T 3grz_A          123 D----GKFDLIVANILAE  136 (205)
T ss_dssp             C----SCEEEEEEESCHH
T ss_pred             C----CCceEEEECCcHH
Confidence            2    6999999999875

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.54  E-value=1.3e-13  Score=107.89  Aligned_cols=89  Identities=19%  Similarity=0.239  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc
Q psy17460         34 AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD  113 (216)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  113 (216)
                      .+.+...+...+.  ++.+|||+|||+|.++..++..++ +++|+|+|+.+++.++.+....+ .+++++.+|+  .+.+
T Consensus        25 ~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~--~~~~   98 (227)
T 1ve3_A           25 IETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDA--RKLS   98 (227)
T ss_dssp             HHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCT--TSCC
T ss_pred             HHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEECch--hcCC
Confidence            3444455544332  477999999999999999998877 99999999999999999988776 3899999999  6655


Q ss_pred             cccccCcccEEEEcCCC
Q psy17460        114 SSVFKQKVDTVIMNPPF  130 (216)
Q Consensus       114 ~~~~~~~~D~vi~npp~  130 (216)
                      ...  ++||+|++++++
T Consensus        99 ~~~--~~~D~v~~~~~~  113 (227)
T 1ve3_A           99 FED--KTFDYVIFIDSI  113 (227)
T ss_dssp             SCT--TCEEEEEEESCG
T ss_pred             CCC--CcEEEEEEcCch
Confidence            332  689999999983

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.54  E-value=2e-13  Score=105.62  Aligned_cols=122  Identities=15%  Similarity=0.179  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE  109 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  109 (216)
                      +.+.+.++..+... ...++.+|||+|||+|..+..++... ..+++|+|+++.+++.++.++...+.++++++.+|+  
T Consensus        48 ~~~~~~~~~~l~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--  124 (207)
T 1jsx_A           48 EMLVRHILDSIVVA-PYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV--  124 (207)
T ss_dssp             CHHHHHHHHHHHHG-GGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT--
T ss_pred             HHHHHHHHhhhhhh-hhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecch--
Confidence            34555566655432 11247899999999999999988864 369999999999999999999988886799999999  


Q ss_pred             cccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCC
Q psy17460        110 KSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLN  188 (216)
Q Consensus       110 ~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  188 (216)
                      .+.+..   ++||+|+++.. .                            ....+++.+.++|+| +|.+++..+....
T Consensus       125 ~~~~~~---~~~D~i~~~~~-~----------------------------~~~~~l~~~~~~L~~-gG~l~~~~~~~~~  170 (207)
T 1jsx_A          125 EEFPSE---PPFDGVISRAF-A----------------------------SLNDMVSWCHHLPGE-QGRFYALKGQMPE  170 (207)
T ss_dssp             TTSCCC---SCEEEEECSCS-S----------------------------SHHHHHHHHTTSEEE-EEEEEEEESSCCH
T ss_pred             hhCCcc---CCcCEEEEecc-C----------------------------CHHHHHHHHHHhcCC-CcEEEEEeCCCch
Confidence            666532   68999998641 1                            234566677788888 8888887765443

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.54  E-value=1.4e-13  Score=109.24  Aligned_cols=82  Identities=17%  Similarity=0.150  Sum_probs=71.5

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ..++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.++...+.++++++.+|+  .+++...  ++||+|++
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~--~~fD~v~~   93 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA--ESLPFPD--DSFDIITC   93 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT--TBCCSCT--TCEEEEEE
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc--ccCCCCC--CcEEEEEE
Confidence            35788999999999999999998875 9999999999999999999888877899999999  6665443  78999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      +..+++.
T Consensus        94 ~~~l~~~  100 (239)
T 1xxl_A           94 RYAAHHF  100 (239)
T ss_dssp             ESCGGGC
T ss_pred             CCchhhc
Confidence            8777655

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.54  E-value=6.5e-14  Score=110.29  Aligned_cols=98  Identities=9%  Similarity=0.008  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEec
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFE  106 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d  106 (216)
                      ......++..+....+..++.+|||+|||+|..++.++.. + ..+|+++|+++++++.|++++...++.  +++++.+|
T Consensus        38 ~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gd  117 (221)
T 3dr5_A           38 DEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSR  117 (221)
T ss_dssp             CHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSC
T ss_pred             CHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcC
Confidence            3444455555555433334459999999999999998885 3 379999999999999999999998875  69999999


Q ss_pred             ccccccccccccCcccEEEEcCCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      +  .+.......++||+|+++.+.
T Consensus       118 a--~~~l~~~~~~~fD~V~~d~~~  139 (221)
T 3dr5_A          118 P--LDVMSRLANDSYQLVFGQVSP  139 (221)
T ss_dssp             H--HHHGGGSCTTCEEEEEECCCT
T ss_pred             H--HHHHHHhcCCCcCeEEEcCcH
Confidence            9  665433223799999998764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.54  E-value=2.1e-13  Score=102.78  Aligned_cols=114  Identities=13%  Similarity=0.121  Sum_probs=82.2

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEec
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFE  106 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d  106 (216)
                      |+..+...++..+.    ..++.+|||+|||+|.++..++... ..+|+|+|+++.+++.++.++...+.+ ++ ++.+|
T Consensus         9 t~~~~~~~~~~~~~----~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d   83 (178)
T 3hm2_A            9 TKQHVRALAISALA----PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQG   83 (178)
T ss_dssp             HHHHHHHHHHHHHC----CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECC
T ss_pred             cHHHHHHHHHHHhc----ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecc
Confidence            45556655655543    3478899999999999999988874 379999999999999999999988887 78 88899


Q ss_pred             ccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceE
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVY  153 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly  153 (216)
                      +  .+.. ....++||+|+++.+++.   ....+.+.+.+++++.++
T Consensus        84 ~--~~~~-~~~~~~~D~i~~~~~~~~---~~~l~~~~~~L~~gG~l~  124 (178)
T 3hm2_A           84 A--PRAF-DDVPDNPDVIFIGGGLTA---PGVFAAAWKRLPVGGRLV  124 (178)
T ss_dssp             T--TGGG-GGCCSCCSEEEECC-TTC---TTHHHHHHHTCCTTCEEE
T ss_pred             h--Hhhh-hccCCCCCEEEECCcccH---HHHHHHHHHhcCCCCEEE
Confidence            8  5422 211268999999998875   222333444455555433

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.54  E-value=3.6e-14  Score=128.86  Aligned_cols=119  Identities=15%  Similarity=0.159  Sum_probs=90.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      +|++|||+|||||.+++.++..|+.+|+++|+|+.+++.++.|+..+++.  +++++.+|+  .++... ..++||+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~--~~~l~~-~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADC--LAWLRE-ANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCH--HHHHHH-CCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH--HHHHHh-cCCCccEEEE
Confidence            68899999999999999999988888999999999999999999999986  699999999  775322 1268999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      |||+....+...        .    +  .........++..+.++|+| +|.+++....
T Consensus       616 DPP~f~~~~~~~--------~----~--~~~~~~~~~ll~~a~~~Lkp-gG~L~~s~~~  659 (703)
T 3v97_A          616 DPPTFSNSKRME--------D----A--FDVQRDHLALMKDLKRLLRA-GGTIMFSNNK  659 (703)
T ss_dssp             CCCSBC-------------------C--CBHHHHHHHHHHHHHHHEEE-EEEEEEEECC
T ss_pred             CCccccCCccch--------h----H--HHHHHHHHHHHHHHHHhcCC-CcEEEEEECC
Confidence            999865411100        0    0  01112345667777888888 8888877664

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.54  E-value=1.5e-13  Score=114.30  Aligned_cols=80  Identities=21%  Similarity=0.276  Sum_probs=68.6

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|.++..+++.++.+|+|+|++ ++++.|++++..+++. +++++.+|+  .+++...  ++||+|+++
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~~~~--~~~D~Ivs~  112 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKL--EDVHLPF--PKVDIIISE  112 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCT--TTSCCSS--SCEEEEEEC
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECch--hhccCCC--CcccEEEEe
Confidence            688999999999999999999877799999999 5999999999988876 699999999  6654332  689999999


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      ++....
T Consensus       113 ~~~~~l  118 (328)
T 1g6q_1          113 WMGYFL  118 (328)
T ss_dssp             CCBTTB
T ss_pred             Cchhhc
Confidence            875443

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.54  E-value=3.6e-14  Score=110.21  Aligned_cols=82  Identities=11%  Similarity=0.033  Sum_probs=66.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh------------CCCceEEEEecccccccccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF------------EITNCDAILFEINEKSLDSS  115 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~------------~~~~v~~~~~d~~~~~~~~~  115 (216)
                      .++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++.|+++....            ...+++++++|+  .+++..
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~--~~l~~~   97 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF--FALTAR   97 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC--SSSTHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc--ccCCcc
Confidence            4678999999999999999999876 8999999999999999876431            123799999999  777653


Q ss_pred             cccCcccEEEEcCCCCCC
Q psy17460        116 VFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       116 ~~~~~~D~vi~npp~~~~  133 (216)
                      . .++||+|++...+++.
T Consensus        98 ~-~~~fD~v~~~~~l~~l  114 (203)
T 1pjz_A           98 D-IGHCAAFYDRAAMIAL  114 (203)
T ss_dssp             H-HHSEEEEEEESCGGGS
T ss_pred             c-CCCEEEEEECcchhhC
Confidence            1 1489999998777654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.53  E-value=2.7e-13  Score=116.88  Aligned_cols=100  Identities=16%  Similarity=0.122  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccc
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEK  110 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  110 (216)
                      ....+.++..+...+...++.+|||+|||+|.+++.++.. ..+|+|+|+|+.+++.|+.|+..+++++++++.+|+  .
T Consensus       268 ~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~--~  344 (433)
T 1uwv_A          268 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL--E  344 (433)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCT--T
T ss_pred             HHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCH--H
Confidence            4556667776665555557789999999999999999988 459999999999999999999999987899999999  5


Q ss_pred             ccccc--cccCcccEEEEcCCCCCC
Q psy17460        111 SLDSS--VFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       111 ~~~~~--~~~~~~D~vi~npp~~~~  133 (216)
                      +....  ...++||+|++|||+...
T Consensus       345 ~~l~~~~~~~~~fD~Vv~dPPr~g~  369 (433)
T 1uwv_A          345 EDVTKQPWAKNGFDKVLLDPARAGA  369 (433)
T ss_dssp             SCCSSSGGGTTCCSEEEECCCTTCC
T ss_pred             HHhhhhhhhcCCCCEEEECCCCccH
Confidence            53211  122589999999998643

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.53  E-value=7e-14  Score=123.59  Aligned_cols=132  Identities=21%  Similarity=0.180  Sum_probs=95.1

Q ss_pred             cccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc----C---------------CCEEEEEeCC
Q psy17460         21 KVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL----G---------------ADFCFALECD   81 (216)
Q Consensus        21 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~----~---------------~~~v~~iD~~   81 (216)
                      +...++|.||..+...|+..+..    .++.+|+|++||||.+++.++..    +               ...++|+|++
T Consensus       145 ~~~~G~fyTP~~iv~~mv~~l~p----~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid  220 (541)
T 2ar0_A          145 KSGAGQYFTPRPLIKTIIHLLKP----QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV  220 (541)
T ss_dssp             -----CCCCCHHHHHHHHHHHCC----CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC
T ss_pred             cccCCeeeCCHHHHHHHHHHhcc----CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCC
Confidence            45679999999999998877743    36789999999999998887654    1               1379999999


Q ss_pred             hHHHHHHHHhhhHhCCCc-----eEEEEecccccccccccccCcccEEEEcCCCCCCCC------------CCCHHHHHH
Q psy17460         82 KEILDIFIDNKNEFEITN-----CDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNC------------GIDLAFVQY  144 (216)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~-----v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~------------~~~~~~~~~  144 (216)
                      +.+++.|+.|+...++.+     +.++++|+  +..+.. ...+||+|++||||+....            ..+..|+..
T Consensus       221 ~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDt--L~~~~~-~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~  297 (541)
T 2ar0_A          221 PGTRRLALMNCLLHDIEGNLDHGGAIRLGNT--LGSDGE-NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH  297 (541)
T ss_dssp             HHHHHHHHHHHHTTTCCCBGGGTBSEEESCT--TSHHHH-TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCccccccCCeEeCCC--cccccc-cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHH
Confidence            999999999998888754     88999999  664321 1268999999999997621            123456666


Q ss_pred             HhhcCC---ceEEEeeCc
Q psy17460        145 AADISK---VVYSLHKTS  159 (216)
Q Consensus       145 ~l~~~~---~ly~~~~~~  159 (216)
                      ++..++   .+..+.+.+
T Consensus       298 ~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          298 IIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             HHHHEEEEEEEEEEEEHH
T ss_pred             HHHHhCCCCEEEEEecCc
Confidence            655543   344444433

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.53  E-value=1.3e-13  Score=111.36  Aligned_cols=94  Identities=19%  Similarity=0.161  Sum_probs=76.9

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc
Q psy17460         36 TILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS  114 (216)
Q Consensus        36 ~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  114 (216)
                      .+...+.......++.+|||+|||+|.++..++..++ .+++|+|+++.+++.++.++...+.++++++.+|+  .+.+.
T Consensus        24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~  101 (276)
T 3mgg_A           24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANI--FSLPF  101 (276)
T ss_dssp             HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG--GGCCS
T ss_pred             HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccc--ccCCC
Confidence            3334444433345788999999999999999998864 79999999999999999999988887899999999  76665


Q ss_pred             ccccCcccEEEEcCCCCCC
Q psy17460        115 SVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       115 ~~~~~~~D~vi~npp~~~~  133 (216)
                      ..  ++||+|+++..+++.
T Consensus       102 ~~--~~fD~v~~~~~l~~~  118 (276)
T 3mgg_A          102 ED--SSFDHIFVCFVLEHL  118 (276)
T ss_dssp             CT--TCEEEEEEESCGGGC
T ss_pred             CC--CCeeEEEEechhhhc
Confidence            43  799999998877655

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.53  E-value=5.3e-14  Score=119.74  Aligned_cols=80  Identities=20%  Similarity=0.202  Sum_probs=67.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      +|++|||+|||||.+++.++..|+. |+++|+|+.+++.++.|+..+++. ..+..+|+  .++..... +.||+|++||
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~--~~~l~~~~-~~fD~Ii~dp  288 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLR-VDIRHGEA--LPTLRGLE-GPFHHVLLDP  288 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCC-CEEEESCH--HHHHHTCC-CCEEEEEECC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCC-CcEEEccH--HHHHHHhc-CCCCEEEECC
Confidence            5889999999999999999998875 999999999999999999999984 46779999  76543222 3499999999


Q ss_pred             CCCCC
Q psy17460        129 PFGTR  133 (216)
Q Consensus       129 p~~~~  133 (216)
                      |+...
T Consensus       289 P~f~~  293 (393)
T 4dmg_A          289 PTLVK  293 (393)
T ss_dssp             CCCCS
T ss_pred             CcCCC
Confidence            98654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.53  E-value=1e-13  Score=108.11  Aligned_cols=82  Identities=21%  Similarity=0.304  Sum_probs=71.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC-C-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG-A-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~-~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .++.+|||+|||+|.++..+++.+ + .+|+|+|+++.+++.++.++...++++++++.+|+  .+.+...  ++||+|+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~--~~fD~v~  111 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE--NKIPLPD--NTVDFIF  111 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT--TBCSSCS--SCEEEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc--ccCCCCC--CCeeEEE
Confidence            478899999999999999988875 3 69999999999999999999988887899999999  6665443  6899999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      ++..+++.
T Consensus       112 ~~~~l~~~  119 (219)
T 3dh0_A          112 MAFTFHEL  119 (219)
T ss_dssp             EESCGGGC
T ss_pred             eehhhhhc
Confidence            99887765

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.53  E-value=5.7e-14  Score=119.75  Aligned_cols=83  Identities=18%  Similarity=0.209  Sum_probs=72.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccc--ccCcccEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSV--FKQKVDTVI  125 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~--~~~~~D~vi  125 (216)
                      ++++|||+|||+|.+++.++..|+.+|+|+|+++.+++.|+.|+..++++ +++++.+|+  .+.....  ..++||+|+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~--~~~~~~~~~~~~~fD~Vi  294 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA--FEEMEKLQKKGEKFDIVV  294 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH--HHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCH--HHHHHHHHhhCCCCCEEE
Confidence            67899999999999999999987779999999999999999999999987 899999999  6654321  126899999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      +|||+...
T Consensus       295 ~dpP~~~~  302 (396)
T 2as0_A          295 LDPPAFVQ  302 (396)
T ss_dssp             ECCCCSCS
T ss_pred             ECCCCCCC
Confidence            99998765

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.53  E-value=2.5e-13  Score=111.38  Aligned_cols=127  Identities=13%  Similarity=0.099  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINE  109 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~  109 (216)
                      ......+..+...+...++.+|||+|||+|.++..+++. + .+|+|+|+|+.+++.++.++...++. +++++.+|+  
T Consensus        55 ~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--  131 (302)
T 3hem_A           55 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW--  131 (302)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCG--
T ss_pred             HHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCH--
Confidence            334445555555555668889999999999999998887 6 59999999999999999999988887 799999999  


Q ss_pred             cccccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        110 KSLDSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       110 ~~~~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      .++  .   ++||+|+++..+++. ++...                 ........+++.+.++|+| +|.+++..-
T Consensus       132 ~~~--~---~~fD~v~~~~~~~~~~d~~~~-----------------~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~  184 (302)
T 3hem_A          132 EEF--D---EPVDRIVSLGAFEHFADGAGD-----------------AGFERYDTFFKKFYNLTPD-DGRMLLHTI  184 (302)
T ss_dssp             GGC--C---CCCSEEEEESCGGGTTCCSSC-----------------CCTTHHHHHHHHHHHSSCT-TCEEEEEEE
T ss_pred             HHc--C---CCccEEEEcchHHhcCccccc-----------------cchhHHHHHHHHHHHhcCC-CcEEEEEEE
Confidence            665  2   799999999887765 21000                 0001234556666777777 777776443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.53  E-value=8.9e-14  Score=112.89  Aligned_cols=84  Identities=17%  Similarity=0.176  Sum_probs=70.5

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc--ccCccc
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV--FKQKVD  122 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~~D  122 (216)
                      ..++.+|||+|||+|..+..++..  +..+|+|+|+++.+++.++.|+...++++++++.+|+  .+++...  ..++||
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~--~~~~~~~~~~~~~fD  158 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADM--RKYKDYLLKNEIFFD  158 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCH--HHHHHHHHHTTCCEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCCh--HhcchhhhhccccCC
Confidence            357889999999999999988874  3379999999999999999999999987899999999  6654310  126899


Q ss_pred             EEEEcCCCCC
Q psy17460        123 TVIMNPPFGT  132 (216)
Q Consensus       123 ~vi~npp~~~  132 (216)
                      +|++|||+..
T Consensus       159 ~Vl~d~Pcs~  168 (274)
T 3ajd_A          159 KILLDAPCSG  168 (274)
T ss_dssp             EEEEEECCC-
T ss_pred             EEEEcCCCCC
Confidence            9999999964

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.52  E-value=2.1e-13  Score=114.01  Aligned_cols=80  Identities=28%  Similarity=0.347  Sum_probs=68.6

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ..++.+|||+|||+|.++..+++.++.+|+|+|+++ +++.|++++..+++. +++++.+|+  .+++...  ++||+|+
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~~~~--~~~D~Iv  136 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKI--EEVHLPV--EKVDVII  136 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT--TTSCCSC--SCEEEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeH--HHhcCCC--CcEEEEE
Confidence            357889999999999999999998777999999997 999999999988874 899999999  6654432  6899999


Q ss_pred             EcC-CCC
Q psy17460        126 MNP-PFG  131 (216)
Q Consensus       126 ~np-p~~  131 (216)
                      +++ +|.
T Consensus       137 s~~~~~~  143 (340)
T 2fyt_A          137 SEWMGYF  143 (340)
T ss_dssp             ECCCBTT
T ss_pred             EcCchhh
Confidence            998 444

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.52  E-value=3.2e-13  Score=107.79  Aligned_cols=112  Identities=19%  Similarity=0.198  Sum_probs=88.7

Q ss_pred             HHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccccc
Q psy17460         39 HTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFK  118 (216)
Q Consensus        39 ~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  118 (216)
                      ..+...+...++.+|||+|||+|.++..++..++.+|+|+|+++.+++.++.+..   ..+++++.+|+  .+++...  
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~--~~~~~~~--  106 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAI--EDIAIEP--  106 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCG--GGCCCCT--
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcch--hhCCCCC--
Confidence            3444544556788999999999999999999877799999999999999999876   22799999999  6666433  


Q ss_pred             CcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        119 QKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       119 ~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      ++||+|+++..+++.                         .+...+++.+.++|+| +|.+++..
T Consensus       107 ~~fD~v~~~~~l~~~-------------------------~~~~~~l~~~~~~Lkp-gG~l~~~~  145 (253)
T 3g5l_A          107 DAYNVVLSSLALHYI-------------------------ASFDDICKKVYINLKS-SGSFIFSV  145 (253)
T ss_dssp             TCEEEEEEESCGGGC-------------------------SCHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             CCeEEEEEchhhhhh-------------------------hhHHHHHHHHHHHcCC-CcEEEEEe
Confidence            799999998776543                         2345677777888888 88888753

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.52  E-value=4.7e-14  Score=119.77  Aligned_cols=82  Identities=18%  Similarity=0.158  Sum_probs=71.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc--ccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV--FKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|.+++.++.. +.+|+|+|+++.+++.|+.|+..+++.+++++.+|+  .+.....  ..++||+|++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~--~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA--FDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCH--HHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCH--HHHHHHHHhcCCCeeEEEE
Confidence            6789999999999999999988 669999999999999999999999987899999999  6654321  1268999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      |||+...
T Consensus       286 dpP~~~~  292 (382)
T 1wxx_A          286 DPPAFAK  292 (382)
T ss_dssp             CCCCSCC
T ss_pred             CCCCCCC
Confidence            9998765

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.52  E-value=6.5e-14  Score=110.06  Aligned_cols=106  Identities=10%  Similarity=0.134  Sum_probs=79.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc-ccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS-SVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|.++..++...+ ..|+|+|+++++++.|+.++...+++|+.++.+|+  .++.. ....++||.|++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da--~~~l~~~~~~~~~d~v~~  111 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDA--VEVLHKMIPDNSLRMVQL  111 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCH--HHHHHHHSCTTCEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCH--HHHHHHHcCCCChheEEE
Confidence            567999999999999999998765 68999999999999999999998888999999999  66411 112279999999


Q ss_pred             c--CCCCCC----CCCCCHHHHH---HHhhcCCceEEEe
Q psy17460        127 N--PPFGTR----NCGIDLAFVQ---YAADISKVVYSLH  156 (216)
Q Consensus       127 n--pp~~~~----~~~~~~~~~~---~~l~~~~~ly~~~  156 (216)
                      +  +|+...    .+.....++.   +.+++++.++...
T Consensus       112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            8  565433    1112223444   4566666555444

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.52  E-value=1.1e-13  Score=112.06  Aligned_cols=116  Identities=14%  Similarity=0.158  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHhhcccCCCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCC
Q psy17460          3 LKHIEQYLQQLTFNFSNPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD   81 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~   81 (216)
                      +..+++.+...   -..++..++| |-+...+.+.++..+..    .++ +|||+|||+|.++..++..+ .+|+|+|+|
T Consensus         7 ~~~~~~~~~~~---~~~~~k~~GQnfL~d~~i~~~Iv~~~~~----~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid   77 (271)
T 3fut_A            7 PQSVRALLERH---GLFADKRFGQNFLVSEAHLRRIVEAARP----FTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKD   77 (271)
T ss_dssp             HHHHHHHHHHT---TCCCSTTSSCCEECCHHHHHHHHHHHCC----CCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESC
T ss_pred             HHHHHHHHHhc---CCCccccCCccccCCHHHHHHHHHhcCC----CCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECC
Confidence            44566555444   2367778888 66777888888877754    367 99999999999999999987 489999999


Q ss_pred             hHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         82 KEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +++++.+++++..   .+++++.+|+  .+++.... ..+|.|++|+||...
T Consensus        78 ~~~~~~l~~~~~~---~~v~vi~~D~--l~~~~~~~-~~~~~iv~NlPy~is  123 (271)
T 3fut_A           78 LRLRPVLEETLSG---LPVRLVFQDA--LLYPWEEV-PQGSLLVANLPYHIA  123 (271)
T ss_dssp             GGGHHHHHHHTTT---SSEEEEESCG--GGSCGGGS-CTTEEEEEEECSSCC
T ss_pred             HHHHHHHHHhcCC---CCEEEEECCh--hhCChhhc-cCccEEEecCccccc
Confidence            9999999998862   3899999999  77655321 368999999999864

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.52  E-value=2.1e-13  Score=109.50  Aligned_cols=81  Identities=16%  Similarity=0.035  Sum_probs=66.1

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH-----------------hCCCceEEEEecccccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNE-----------------FEITNCDAILFEINEKS  111 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~d~~~~~  111 (216)
                      ++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.|++....                 ....+++++++|+  .+
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~--~~  144 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI--FD  144 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT--TT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc--cc
Confidence            678999999999999999999987 899999999999999876531                 0113799999999  77


Q ss_pred             cccccccCcccEEEEcCCCCCC
Q psy17460        112 LDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       112 ~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      ++... .++||+|+++..++..
T Consensus       145 l~~~~-~~~FD~V~~~~~l~~l  165 (252)
T 2gb4_A          145 LPRAN-IGKFDRIWDRGALVAI  165 (252)
T ss_dssp             GGGGC-CCCEEEEEESSSTTTS
T ss_pred             CCccc-CCCEEEEEEhhhhhhC
Confidence            76531 1689999998887765

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.52  E-value=5.9e-14  Score=113.00  Aligned_cols=92  Identities=16%  Similarity=0.118  Sum_probs=73.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      .+.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++      ++++++.+|+  .+++...  ++||+|+|..
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~------~~v~~~~~~~--e~~~~~~--~sfD~v~~~~  107 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH------PRVTYAVAPA--EDTGLPP--ASVDVAIAAQ  107 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC------TTEEEEECCT--TCCCCCS--SCEEEEEECS
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc------CCceeehhhh--hhhcccC--CcccEEEEee
Confidence            356899999999999999998875 999999999999876542      3799999999  6666543  7999999999


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      .+|+.+.....+-+.+++++++.
T Consensus       108 ~~h~~~~~~~~~e~~rvLkpgG~  130 (257)
T 4hg2_A          108 AMHWFDLDRFWAELRRVARPGAV  130 (257)
T ss_dssp             CCTTCCHHHHHHHHHHHEEEEEE
T ss_pred             ehhHhhHHHHHHHHHHHcCCCCE
Confidence            99887544444455666666665

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.51  E-value=1.3e-13  Score=109.68  Aligned_cols=78  Identities=10%  Similarity=0.130  Sum_probs=65.6

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-cccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-VFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|..+..++...+ .+|+|+|+|+.+++.++.++..+++++++++.+|+  .+++.. ...++||+|++
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRA--ETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCH--HHHTTCTTTTTCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccH--HHhcccccccCCccEEEE
Confidence            678999999999999998886433 69999999999999999999998887899999999  665431 11268999999


Q ss_pred             cC
Q psy17460        127 NP  128 (216)
Q Consensus       127 np  128 (216)
                      +.
T Consensus       148 ~~  149 (240)
T 1xdz_A          148 RA  149 (240)
T ss_dssp             EC
T ss_pred             ec
Confidence            66

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.51  E-value=1.5e-13  Score=107.43  Aligned_cols=106  Identities=13%  Similarity=0.057  Sum_probs=79.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|.++..+++..+ .+++|+|+++.+++.|+.++...++++++++.+|+  .+++.....++||.|+++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~--~~l~~~~~~~~~d~v~~~  115 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA--DTLTDVFEPGEVKRVYLN  115 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG--GGHHHHCCTTSCCEEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCH--HHHHhhcCcCCcCEEEEE
Confidence            567999999999999999988754 79999999999999999999988887899999999  664311122689999988


Q ss_pred             CCCCCC------CCCCC---HHHHHHHhhcCCceEEEe
Q psy17460        128 PPFGTR------NCGID---LAFVQYAADISKVVYSLH  156 (216)
Q Consensus       128 pp~~~~------~~~~~---~~~~~~~l~~~~~ly~~~  156 (216)
                      .|..+.      .+...   .+.+.+.+++++.++...
T Consensus       116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            654332      11112   334456677777655443

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.51  E-value=1.2e-13  Score=122.07  Aligned_cols=106  Identities=22%  Similarity=0.190  Sum_probs=84.8

Q ss_pred             CcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC----------------CCEEEEEeCChH
Q psy17460         20 PKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG----------------ADFCFALECDKE   83 (216)
Q Consensus        20 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~----------------~~~v~~iD~~~~   83 (216)
                      .+...++|.||..+.+.|+..+..    .++ +|+|++||||.+.+.++..-                ...++|+|+++.
T Consensus       220 ~~k~~G~fyTP~~Vv~lmv~ll~p----~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~  294 (544)
T 3khk_A          220 EGKQGGQYYTPKSIVTLIVEMLEP----YKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPT  294 (544)
T ss_dssp             TTCCSTTTCCCHHHHHHHHHHHCC----CSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHH
T ss_pred             hCccCCeEeCCHHHHHHHHHHHhc----CCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHH
Confidence            456789999999999999998754    244 99999999999987765420                248999999999


Q ss_pred             HHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         84 ILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        84 ~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      ++..|+.|+...++. ++.+.++|.  +..+.. ...+||+|++||||...
T Consensus       295 ~~~lA~~Nl~l~gi~~~i~i~~gDt--L~~~~~-~~~~fD~Iv~NPPf~~~  342 (544)
T 3khk_A          295 TWKLAAMNMVIRGIDFNFGKKNADS--FLDDQH-PDLRADFVMTNPPFNMK  342 (544)
T ss_dssp             HHHHHHHHHHHTTCCCBCCSSSCCT--TTSCSC-TTCCEEEEEECCCSSCC
T ss_pred             HHHHHHHHHHHhCCCcccceeccch--hcCccc-ccccccEEEECCCcCCc
Confidence            999999999888875 455589998  665432 12689999999999963

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.51  E-value=3.9e-13  Score=109.78  Aligned_cols=107  Identities=11%  Similarity=-0.030  Sum_probs=84.2

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...++.+|||+|||+|..+..++.. +. +|+|+|+++.+++.++.+....++. +++++.+|+  .+++...  ++||+
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~--~~fD~  153 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF--LEIPCED--NSYDF  153 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT--TSCSSCT--TCEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc--ccCCCCC--CCEeE
Confidence            3357889999999999999998886 54 9999999999999999999888875 799999999  7766543  78999


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        124 VIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       124 vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      |+++..+++..                         +...+++.+.++|+| +|.+++..
T Consensus       154 v~~~~~l~~~~-------------------------~~~~~l~~~~~~Lkp-gG~l~~~~  187 (297)
T 2o57_A          154 IWSQDAFLHSP-------------------------DKLKVFQECARVLKP-RGVMAITD  187 (297)
T ss_dssp             EEEESCGGGCS-------------------------CHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             EEecchhhhcC-------------------------CHHHHHHHHHHHcCC-CeEEEEEE
Confidence            99987765441                         134555666667777 77666643

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.51  E-value=5.3e-13  Score=108.46  Aligned_cols=119  Identities=13%  Similarity=0.143  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhH-cCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSIL-LGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEK  110 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~  110 (216)
                      ....++..+...+...++.+|||+|||+|.++..+++ .+. +|+|+|+|+++++.++.++...+.. +++++.+|+  .
T Consensus        48 a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~  124 (287)
T 1kpg_A           48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW--E  124 (287)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG--G
T ss_pred             HHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh--h
Confidence            3344555555555556788999999999999998884 454 9999999999999999999877765 799999999  6


Q ss_pred             ccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      +++     ++||+|++...+++...                       .....+++.+.++|+| +|.+++..
T Consensus       125 ~~~-----~~fD~v~~~~~l~~~~~-----------------------~~~~~~l~~~~~~Lkp-gG~l~~~~  168 (287)
T 1kpg_A          125 QFD-----EPVDRIVSIGAFEHFGH-----------------------ERYDAFFSLAHRLLPA-DGVMLLHT  168 (287)
T ss_dssp             GCC-----CCCSEEEEESCGGGTCT-----------------------TTHHHHHHHHHHHSCT-TCEEEEEE
T ss_pred             hCC-----CCeeEEEEeCchhhcCh-----------------------HHHHHHHHHHHHhcCC-CCEEEEEE
Confidence            655     68999999877765411                       1234455556666666 66666533

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.51  E-value=8.7e-14  Score=111.75  Aligned_cols=77  Identities=22%  Similarity=0.238  Sum_probs=67.0

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|.+++.+++.++ +|+|+|+|+.+++.++.|+..+++. ++++.+|+  .+....   ++||+|++|
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~--~~~~~~---~~fD~Vv~n  191 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSL--EAALPF---GPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCH--HHHGGG---CCEEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECCh--hhcCcC---CCCCEEEEC
Confidence            4678999999999999999999887 9999999999999999999998885 99999999  553212   689999999


Q ss_pred             CCCC
Q psy17460        128 PPFG  131 (216)
Q Consensus       128 pp~~  131 (216)
                      ++++
T Consensus       192 ~~~~  195 (254)
T 2nxc_A          192 LYAE  195 (254)
T ss_dssp             CCHH
T ss_pred             CcHH
Confidence            8653

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.50  E-value=2.9e-13  Score=107.86  Aligned_cols=108  Identities=18%  Similarity=0.204  Sum_probs=82.7

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++.++...+. +++++.+|+  .+.+..   ++||+|+|
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~--~~~~~~---~~fD~v~~  111 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDV--LEIAFK---NEFDAVTM  111 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCG--GGCCCC---SCEEEEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEECCh--hhcccC---CCccEEEE
Confidence            34678999999999999999998865 899999999999999999988776 799999999  666543   68999998


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      .......                      +.......+++.+.++|+| +|.++++..
T Consensus       112 ~~~~~~~----------------------~~~~~~~~~l~~~~~~L~p-gG~li~~~~  146 (252)
T 1wzn_A          112 FFSTIMY----------------------FDEEDLRKLFSKVAEALKP-GGVFITDFP  146 (252)
T ss_dssp             CSSGGGG----------------------SCHHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred             cCCchhc----------------------CCHHHHHHHHHHHHHHcCC-CeEEEEecc
Confidence            5321110                      0111234566667778888 888877543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.50  E-value=2.6e-13  Score=108.45  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=81.4

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEecccccccccccccCccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITN-CDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      ...++.+|||+|||+|.++..++.. ++ .+++++|+++++++.|++++...++.+ ++++.+|+  .+....   ++||
T Consensus        90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~---~~~D  164 (255)
T 3mb5_A           90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDI--YEGIEE---ENVD  164 (255)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCG--GGCCCC---CSEE
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECch--hhccCC---CCcC
Confidence            4457889999999999999998887 53 799999999999999999999988875 99999999  654322   6899


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEee
Q psy17460        123 TVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHK  157 (216)
Q Consensus       123 ~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~  157 (216)
                      +|++|+|..    ....+...+++++++.++...+
T Consensus       165 ~v~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          165 HVILDLPQP----ERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             EEEECSSCG----GGGHHHHHHHEEEEEEEEEEES
T ss_pred             EEEECCCCH----HHHHHHHHHHcCCCCEEEEEEC
Confidence            999999843    2334455566666665554443

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.50  E-value=3.2e-13  Score=114.16  Aligned_cols=119  Identities=17%  Similarity=0.208  Sum_probs=86.7

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE  109 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  109 (216)
                      .....+.++..+...+.. .+.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.|+.|+..+++++++++.+|+  
T Consensus       195 n~~~~~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~--  270 (369)
T 3bt7_A          195 NAAMNIQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAA--  270 (369)
T ss_dssp             BHHHHHHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCS--
T ss_pred             CHHHHHHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCH--
Confidence            334556777776655432 3678999999999999998885 459999999999999999999999988899999999  


Q ss_pred             ccccccccc--------------CcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc-eEEEee
Q psy17460        110 KSLDSSVFK--------------QKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV-VYSLHK  157 (216)
Q Consensus       110 ~~~~~~~~~--------------~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~-ly~~~~  157 (216)
                      .+.......              .+||+|++|||+.    +.....++. +..++. +|..+.
T Consensus       271 ~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~----g~~~~~~~~-l~~~g~ivyvsc~  328 (369)
T 3bt7_A          271 EEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS----GLDSETEKM-VQAYPRILYISCN  328 (369)
T ss_dssp             HHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT----CCCHHHHHH-HTTSSEEEEEESC
T ss_pred             HHHHHHHhhccccccccccccccCCCCEEEECcCcc----ccHHHHHHH-HhCCCEEEEEECC
Confidence            554321110              3799999999975    233333433 334444 665543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=6.8e-13  Score=100.16  Aligned_cols=93  Identities=19%  Similarity=0.310  Sum_probs=77.5

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      .+++..+.+.++..+..    .++.+|||+|||+|.++..++. ...+++|+|+++.+++.++.++..+++++++++.+|
T Consensus        17 ~~~~~~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d   91 (183)
T 2yxd_A           17 PITKEEIRAVSIGKLNL----NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGR   91 (183)
T ss_dssp             CCCCHHHHHHHHHHHCC----CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             CcCHHHHHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence            45667777777666532    4778999999999999999888 456999999999999999999998887789999999


Q ss_pred             ccccccccccccCcccEEEEcCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      +  .+ +...  ++||+|+++++
T Consensus        92 ~--~~-~~~~--~~~D~i~~~~~  109 (183)
T 2yxd_A           92 A--ED-VLDK--LEFNKAFIGGT  109 (183)
T ss_dssp             H--HH-HGGG--CCCSEEEECSC
T ss_pred             c--cc-cccC--CCCcEEEECCc
Confidence            9  65 3222  68999999998

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.50  E-value=4e-13  Score=105.41  Aligned_cols=81  Identities=15%  Similarity=0.075  Sum_probs=67.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccc----cCcc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVF----KQKV  121 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~----~~~~  121 (216)
                      ++.+|||+|||+|..++.+++. . ..+|+++|+++.+++.|++++...++. +++++.+|+  .+......    .++|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~l~~~~~~~~~~~f  135 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS--QDLIPQLKKKYDVDTL  135 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH--HHHGGGTTTTSCCCCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH--HHHHHHHHHhcCCCce
Confidence            6789999999999999998885 2 369999999999999999999999886 699999999  65432221    1589


Q ss_pred             cEEEEcCCCC
Q psy17460        122 DTVIMNPPFG  131 (216)
Q Consensus       122 D~vi~npp~~  131 (216)
                      |+|+++.+.+
T Consensus       136 D~V~~d~~~~  145 (221)
T 3u81_A          136 DMVFLDHWKD  145 (221)
T ss_dssp             SEEEECSCGG
T ss_pred             EEEEEcCCcc
Confidence            9999987643

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.50  E-value=2.8e-13  Score=113.57  Aligned_cols=80  Identities=28%  Similarity=0.334  Sum_probs=69.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.|++++..+++. +++++.+|+  .+++..   ++||+|++
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~--~~~~~~---~~~D~Ivs  122 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKV--EEVSLP---EQVDIIIS  122 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCT--TTCCCS---SCEEEEEE
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcch--hhCCCC---CceeEEEE
Confidence            47889999999999999999998777999999996 889999999988874 799999999  665433   68999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      ++++.+.
T Consensus       123 ~~~~~~~  129 (348)
T 2y1w_A          123 EPMGYML  129 (348)
T ss_dssp             CCCBTTB
T ss_pred             eCchhcC
Confidence            9886654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.50  E-value=1.9e-13  Score=109.43  Aligned_cols=115  Identities=10%  Similarity=0.045  Sum_probs=86.6

Q ss_pred             HHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccccc
Q psy17460         39 HTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFK  118 (216)
Q Consensus        39 ~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  118 (216)
                      ..+...+...++.+|||+|||+|.++..++.....+|+|+|+|+.+++.++.+....  .+++++.+|+  .+.+...  
T Consensus        45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~--~~~~~~~--  118 (266)
T 3ujc_A           45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--NKIIFEANDI--LTKEFPE--  118 (266)
T ss_dssp             HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCT--TTCCCCT--
T ss_pred             HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECcc--ccCCCCC--
Confidence            334444455678899999999999999988863349999999999999999988665  4899999999  6665433  


Q ss_pred             CcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        119 QKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       119 ~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      ++||+|+++..+++..                       ..+...+++.+.++|+| +|.+++..
T Consensus       119 ~~fD~v~~~~~l~~~~-----------------------~~~~~~~l~~~~~~L~p-gG~l~~~~  159 (266)
T 3ujc_A          119 NNFDLIYSRDAILALS-----------------------LENKNKLFQKCYKWLKP-TGTLLITD  159 (266)
T ss_dssp             TCEEEEEEESCGGGSC-----------------------HHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             CcEEEEeHHHHHHhcC-----------------------hHHHHHHHHHHHHHcCC-CCEEEEEE
Confidence            7999999988776441                       12334566666777777 77777644

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.50  E-value=3.1e-13  Score=106.52  Aligned_cols=80  Identities=19%  Similarity=0.203  Sum_probs=69.6

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ..++.+|||+|||+|.++..++...+ .+++|+|+|+.+++.++.++...+  +++++.+|+  .+.+..   ++||+|+
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~--~~~~~~---~~fD~v~  114 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADY--SKYDFE---EKYDMVV  114 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCT--TTCCCC---SCEEEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCch--hccCCC---CCceEEE
Confidence            34678999999999999999988853 699999999999999999987665  899999999  776654   6999999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      ++.++++.
T Consensus       115 ~~~~l~~~  122 (234)
T 3dtn_A          115 SALSIHHL  122 (234)
T ss_dssp             EESCGGGS
T ss_pred             EeCccccC
Confidence            99888766

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.50  E-value=8.2e-13  Score=109.01  Aligned_cols=118  Identities=13%  Similarity=0.143  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccc
Q psy17460         34 AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKS  111 (216)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~  111 (216)
                      ....+..+...+...++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.++.++...++. +++++.+|+  .+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~  151 (318)
T 2fk8_A           75 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW--ED  151 (318)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG--GG
T ss_pred             HHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh--HH
Confidence            3445555555555567889999999999999998877 65 9999999999999999999887775 699999999  66


Q ss_pred             cccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        112 LDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       112 ~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      ++     ++||+|+++..+++...                       .....+++.+.++|+| +|.+++..
T Consensus       152 ~~-----~~fD~v~~~~~l~~~~~-----------------------~~~~~~l~~~~~~Lkp-gG~l~~~~  194 (318)
T 2fk8_A          152 FA-----EPVDRIVSIEAFEHFGH-----------------------ENYDDFFKRCFNIMPA-DGRMTVQS  194 (318)
T ss_dssp             CC-----CCCSEEEEESCGGGTCG-----------------------GGHHHHHHHHHHHSCT-TCEEEEEE
T ss_pred             CC-----CCcCEEEEeChHHhcCH-----------------------HHHHHHHHHHHHhcCC-CcEEEEEE
Confidence            54     68999999887764411                       1234455556666666 66666543

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.50  E-value=4.9e-13  Score=120.99  Aligned_cols=112  Identities=17%  Similarity=0.063  Sum_probs=83.3

Q ss_pred             CCcccCccccCCHHHHHHHHHHHHhhcC--CCCCCEEEEecCCCCHhHHHHhHcC----CCEEEEEeCChHHHHHH--HH
Q psy17460         19 NPKVHLEQYHTPPHLAATILHTIQNNYN--DIDGKTVLDLGCGSGILTFGSILLG----ADFCFALECDKEILDIF--ID   90 (216)
Q Consensus        19 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~~~~vlD~g~GtG~~~~~~~~~~----~~~v~~iD~~~~~~~~~--~~   90 (216)
                      ..+...++|.||..++..|+..+...++  ..++.+|+|+|||+|.+++.++...    ..+++|+|+++.+++.|  +.
T Consensus       289 k~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~Rl  368 (878)
T 3s1s_A          289 RGRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRL  368 (878)
T ss_dssp             TSCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHH
T ss_pred             HhCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHH
Confidence            4567789999999999999988432222  2357899999999999999988763    25799999999999999  66


Q ss_pred             hhhHh----CCCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         91 NKNEF----EITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        91 ~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      |+..+    +.....+..+|+  ...... ...+||+|++||||...
T Consensus       369 NL~lN~LlhGi~~~~I~~dD~--L~~~~~-~~~kFDVVIgNPPYg~~  412 (878)
T 3s1s_A          369 GLLFPQLVSSNNAPTITGEDV--CSLNPE-DFANVSVVVMNPPYVSG  412 (878)
T ss_dssp             HTTSTTTCBTTBCCEEECCCG--GGCCGG-GGTTEEEEEECCBCCSS
T ss_pred             HHHHhhhhcCCCcceEEecch--hccccc-ccCCCCEEEECCCcccc
Confidence            66553    232346667777  553211 22689999999999753

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.50  E-value=5.5e-13  Score=106.65  Aligned_cols=118  Identities=18%  Similarity=0.211  Sum_probs=84.6

Q ss_pred             CHHHHHHHHHHHHh-hcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460         30 PPHLAATILHTIQN-NYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN  108 (216)
Q Consensus        30 ~~~~~~~~~~~~~~-~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  108 (216)
                      +....+.++..+.. .....++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++.++ .....+++++.+|+ 
T Consensus        19 ~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~-   95 (263)
T 2yqz_A           19 PPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADA-   95 (263)
T ss_dssp             CHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCT-
T ss_pred             ChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-hccCCceEEEEccc-
Confidence            34455556665532 11234678999999999999999988864 8999999999999999998 33334899999999 


Q ss_pred             ccccccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCceE
Q psy17460        109 EKSLDSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVVY  153 (216)
Q Consensus       109 ~~~~~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly  153 (216)
                       .+++...  ++||+|+++..+++. +.....+.+.+++++++.++
T Consensus        96 -~~~~~~~--~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~  138 (263)
T 2yqz_A           96 -RAIPLPD--ESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALL  138 (263)
T ss_dssp             -TSCCSCT--TCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEE
T ss_pred             -ccCCCCC--CCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEE
Confidence             6665433  689999999888776 32223334445555555533

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.49  E-value=3.6e-13  Score=106.57  Aligned_cols=117  Identities=15%  Similarity=0.138  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE  109 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  109 (216)
                      .+++.++..+. .+...+|.+|||+|||+|..+..++.. |+ ++|+|+|+++++++.++.++...+  |+..+.+|+.+
T Consensus        61 klaa~i~~gl~-~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~--ni~~V~~d~~~  137 (233)
T 4df3_A           61 KLAAALLKGLI-ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR--NIFPILGDARF  137 (233)
T ss_dssp             HHHHHHHTTCS-CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT--TEEEEESCTTC
T ss_pred             HHHHHHHhchh-hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc--CeeEEEEeccC
Confidence            34444433332 235678999999999999999998886 66 899999999999999999887654  89999999933


Q ss_pred             cccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceE
Q psy17460        110 KSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVY  153 (216)
Q Consensus       110 ~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly  153 (216)
                      .+.. ....+++|+|+++.+++.. .........+++++++.+.
T Consensus       138 p~~~-~~~~~~vDvVf~d~~~~~~-~~~~l~~~~r~LKpGG~lv  179 (233)
T 4df3_A          138 PEKY-RHLVEGVDGLYADVAQPEQ-AAIVVRNARFFLRDGGYML  179 (233)
T ss_dssp             GGGG-TTTCCCEEEEEECCCCTTH-HHHHHHHHHHHEEEEEEEE
T ss_pred             cccc-ccccceEEEEEEeccCChh-HHHHHHHHHHhccCCCEEE
Confidence            2221 1223789999999887632 1111223344566666533

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.49  E-value=1.2e-13  Score=112.88  Aligned_cols=101  Identities=17%  Similarity=0.216  Sum_probs=80.2

Q ss_pred             ccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC-Cc
Q psy17460         22 VHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI-TN   99 (216)
Q Consensus        22 ~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~-~~   99 (216)
                      ..++| |.+...+.+.++..+.    ..++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++.++...+. ++
T Consensus         4 k~~gq~fl~d~~i~~~i~~~~~----~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~   78 (285)
T 1zq9_A            4 TGIGQHILKNPLIINSIIDKAA----LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASK   78 (285)
T ss_dssp             ----CCEECCHHHHHHHHHHTC----CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGG
T ss_pred             CCCCcCccCCHHHHHHHHHhcC----CCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence            45666 4457777777776653    34788999999999999999998865 999999999999999999876665 37


Q ss_pred             eEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460        100 CDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       100 v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      ++++.+|+  .+.+.    .+||+|++|+||+..
T Consensus        79 v~~~~~D~--~~~~~----~~fD~vv~nlpy~~~  106 (285)
T 1zq9_A           79 LQVLVGDV--LKTDL----PFFDTCVANLPYQIS  106 (285)
T ss_dssp             EEEEESCT--TTSCC----CCCSEEEEECCGGGH
T ss_pred             eEEEEcce--ecccc----hhhcEEEEecCcccc
Confidence            99999999  66553    479999999999754

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.49  E-value=1.1e-13  Score=115.87  Aligned_cols=109  Identities=15%  Similarity=0.175  Sum_probs=87.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|.++..+++.++ .+|+++|+|+.+++.++.++..++. +++++.+|+  .+.+ .   ++||+|++|
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d~--~~~~-~---~~fD~Iv~~  268 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-EGEVFASNV--FSEV-K---GRFDMIISN  268 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECST--TTTC-C---SCEEEEEEC
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEccc--cccc-c---CCeeEEEEC
Confidence            566899999999999999998876 5999999999999999999988887 578899999  6654 2   689999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      |||+.-..                    ........+++.+.++|+| +|.+++....
T Consensus       269 ~~~~~g~~--------------------~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~  305 (343)
T 2pjd_A          269 PPFHDGMQ--------------------TSLDAAQTLIRGAVRHLNS-GGELRIVANA  305 (343)
T ss_dssp             CCCCSSSH--------------------HHHHHHHHHHHHHGGGEEE-EEEEEEEEET
T ss_pred             CCcccCcc--------------------CCHHHHHHHHHHHHHhCCC-CcEEEEEEcC
Confidence            99984200                    0011234677778888899 8888886553

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.49  E-value=1.2e-13  Score=125.56  Aligned_cols=101  Identities=25%  Similarity=0.335  Sum_probs=77.8

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-----------------------------------
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-----------------------------------   71 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-----------------------------------   71 (216)
                      -|..+.++..++...    ...++..|+|++||+|+++++++..+                                   
T Consensus       172 apl~e~LAa~ll~~~----~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~  247 (703)
T 3v97_A          172 APIKETLAAAIVMRS----GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTR  247 (703)
T ss_dssp             CSSCHHHHHHHHHHT----TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhh----CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHH
Confidence            344455555554443    44577899999999999999887642                                   


Q ss_pred             --------CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         72 --------ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        72 --------~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                              ...++|+|+|+.+++.|+.|+...++. .+++..+|+  .++......++||+|++||||+.+
T Consensus       248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~--~~~~~~~~~~~~d~Iv~NPPYG~R  316 (703)
T 3v97_A          248 ARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDV--AQLTNPLPKGPYGTVLSNPPYGER  316 (703)
T ss_dssp             HHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCG--GGCCCSCTTCCCCEEEECCCCCC-
T ss_pred             hhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh--hhCccccccCCCCEEEeCCCcccc
Confidence                    147999999999999999999999987 499999999  665322111389999999999976

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.49  E-value=1.3e-13  Score=115.07  Aligned_cols=75  Identities=21%  Similarity=0.301  Sum_probs=67.8

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|.+++. +. ++.+|+|+|+|+.+++.++.|+..+++. +++++.+|+  .++.     ++||+|++|
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~--~~~~-----~~fD~Vi~d  265 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV--REVD-----VKGNRVIMN  265 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCG--GGCC-----CCEEEEEEC
T ss_pred             CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCh--HHhc-----CCCcEEEEC
Confidence            688999999999999999 87 5679999999999999999999999984 799999999  7665     589999999


Q ss_pred             CCCCC
Q psy17460        128 PPFGT  132 (216)
Q Consensus       128 pp~~~  132 (216)
                      ||+..
T Consensus       266 pP~~~  270 (336)
T 2yx1_A          266 LPKFA  270 (336)
T ss_dssp             CTTTG
T ss_pred             CcHhH
Confidence            99753

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.49  E-value=3.7e-13  Score=107.18  Aligned_cols=109  Identities=14%  Similarity=0.011  Sum_probs=86.0

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ...++.+|||+|||+|.++..++..+..+|+|+|+++.+++.++.++...  .+++++.+|+  .+.+...  ++||+|+
T Consensus        90 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~--~~~~~~~--~~fD~v~  163 (254)
T 1xtp_A           90 PGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASM--ETATLPP--NTYDLIV  163 (254)
T ss_dssp             TTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCG--GGCCCCS--SCEEEEE
T ss_pred             cccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccH--HHCCCCC--CCeEEEE
Confidence            44568899999999999999888876668999999999999999988655  3899999999  6665432  6899999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        126 MNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       126 ~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      +...+++..                       ......+++.+.++|+| +|.+++...
T Consensus       164 ~~~~l~~~~-----------------------~~~~~~~l~~~~~~Lkp-gG~l~i~~~  198 (254)
T 1xtp_A          164 IQWTAIYLT-----------------------DADFVKFFKHCQQALTP-NGYIFFKEN  198 (254)
T ss_dssp             EESCGGGSC-----------------------HHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred             EcchhhhCC-----------------------HHHHHHHHHHHHHhcCC-CeEEEEEec
Confidence            987765431                       01234667777888899 888888664

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.48  E-value=4.2e-13  Score=104.72  Aligned_cols=85  Identities=22%  Similarity=0.295  Sum_probs=70.6

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc
Q psy17460         35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS  114 (216)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  114 (216)
                      ..++..+..    .++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.++.    .+++++.+|+  .+++.
T Consensus        35 ~~~l~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~--~~~~~  103 (220)
T 3hnr_A           35 EDILEDVVN----KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----KEFSITEGDF--LSFEV  103 (220)
T ss_dssp             HHHHHHHHH----TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----TTCCEESCCS--SSCCC
T ss_pred             HHHHHHhhc----cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----CceEEEeCCh--hhcCC
Confidence            344454444    2678999999999999999998865 99999999999999999876    3789999999  77665


Q ss_pred             ccccCcccEEEEcCCCCCC
Q psy17460        115 SVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       115 ~~~~~~~D~vi~npp~~~~  133 (216)
                      .   ++||+|+++..+++.
T Consensus       104 ~---~~fD~v~~~~~l~~~  119 (220)
T 3hnr_A          104 P---TSIDTIVSTYAFHHL  119 (220)
T ss_dssp             C---SCCSEEEEESCGGGS
T ss_pred             C---CCeEEEEECcchhcC
Confidence            4   699999999888766

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.48  E-value=7.7e-13  Score=107.49  Aligned_cols=80  Identities=15%  Similarity=0.166  Sum_probs=68.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccc-cccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLD-SSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~-~~~~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|.++..++..+. +|+|+|+++.+++.++.++...++. +++++.+|+  .+.+ ..  .++||+|++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~--~~~fD~v~~  142 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA--QDVASHL--ETPVDLILF  142 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCG--GGTGGGC--SSCEEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCH--HHhhhhc--CCCceEEEE
Confidence            467999999999999999998865 9999999999999999999888874 899999999  6665 22  279999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      +..+++.
T Consensus       143 ~~~l~~~  149 (285)
T 4htf_A          143 HAVLEWV  149 (285)
T ss_dssp             ESCGGGC
T ss_pred             Cchhhcc
Confidence            8877655

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.48  E-value=1.5e-13  Score=110.66  Aligned_cols=144  Identities=15%  Similarity=0.100  Sum_probs=91.3

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCCh-------HHHHHHHHhhhHhCCC-ceEEEEeccccccccccccc-
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDK-------EILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFK-  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~-------~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~-  118 (216)
                      .++.+|||+|||+|..++.++..+. +|+|+|+++       ++++.++.|+..+++. +++++.+|+  .++...... 
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~--~~~l~~~~~~  158 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA--AEQMPALVKT  158 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH--HHHHHHHHHH
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH--HHHHHhhhcc
Confidence            3567999999999999999998864 899999999       9999999998887765 499999999  664322111 


Q ss_pred             -CcccEEEEcCCCCCCCCCCC----HHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCcc--c
Q psy17460        119 -QKVDTVIMNPPFGTRNCGID----LAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQS--Y  191 (216)
Q Consensus       119 -~~~D~vi~npp~~~~~~~~~----~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~--~  191 (216)
                       ++||+|++||||........    .+.+....   +      ...+...++..+.+..+.   ++++.........  +
T Consensus       159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~---~------~~~d~~~ll~~a~~~~~~---~vvvk~p~~~~~l~~~  226 (258)
T 2r6z_A          159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLV---G------EAQDEVVLLHTARQTAKK---RVVVKRPRLGEHLAGQ  226 (258)
T ss_dssp             HCCCSEEEECCCC-------------HHHHHHH---S------HHHHHHHHHHHHHHHCSS---EEEEEEETTCCCGGGC
T ss_pred             CCCccEEEECCCCCCcccchHHHHHHHHhhhhc---C------CCccHHHHHHHHHHhcCc---EEEEEcCCCChhhhhc
Confidence             58999999999976522211    11111111   1      112456777777777433   4555444332221  1


Q ss_pred             -cccccccceEEEEEE
Q psy17460        192 -KFHKKSLHDIEVDLL  206 (216)
Q Consensus       192 -~~~~~~~~~~~~~~~  206 (216)
                       ..+.-..+.++.+++
T Consensus       227 ~~~~~~~~k~~rfdvy  242 (258)
T 2r6z_A          227 APAYQYTGKSTRFDVY  242 (258)
T ss_dssp             CCSEEEECSSEEEEEE
T ss_pred             CCcceecCCceEEEEE
Confidence             223334445666665

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.48  E-value=5.5e-13  Score=103.86  Aligned_cols=118  Identities=11%  Similarity=0.051  Sum_probs=91.5

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-C-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-A-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI  107 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~  107 (216)
                      ...+...++..+    ...++.+|||+|||+|.++..++..+ + .+|+++|+++.+++.++.++...+.++++++.+|+
T Consensus        62 ~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~  137 (215)
T 2yxe_A           62 AIHMVGMMCELL----DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDG  137 (215)
T ss_dssp             CHHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCG
T ss_pred             cHHHHHHHHHhh----CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence            345555555444    33578899999999999999988875 3 69999999999999999999888877899999999


Q ss_pred             cccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCC
Q psy17460        108 NEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDL  187 (216)
Q Consensus       108 ~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  187 (216)
                        .......  ++||+|+++.++++..                               ..+.++|+| +|.+++..+...
T Consensus       138 --~~~~~~~--~~fD~v~~~~~~~~~~-------------------------------~~~~~~L~p-gG~lv~~~~~~~  181 (215)
T 2yxe_A          138 --TLGYEPL--APYDRIYTTAAGPKIP-------------------------------EPLIRQLKD-GGKLLMPVGRYL  181 (215)
T ss_dssp             --GGCCGGG--CCEEEEEESSBBSSCC-------------------------------HHHHHTEEE-EEEEEEEESSSS
T ss_pred             --ccCCCCC--CCeeEEEECCchHHHH-------------------------------HHHHHHcCC-CcEEEEEECCCC
Confidence              5543322  6899999998876431                               235778899 999998776554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.48  E-value=1.6e-13  Score=108.64  Aligned_cols=74  Identities=15%  Similarity=0.175  Sum_probs=63.7

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccc--ccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL--DSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+.+....+. +++++.+|+  .+.  +...  ++||+|++
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~--~~~~~~~~~--~~fD~V~~  134 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLW--EDVAPTLPD--GHFDGILY  134 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCH--HHHGGGSCT--TCEEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCC-CeEEEecCH--HHhhcccCC--CceEEEEE
Confidence            6779999999999999999876666999999999999999999887664 899999999  665  4332  78999999


Q ss_pred             c
Q psy17460        127 N  127 (216)
Q Consensus       127 n  127 (216)
                      |
T Consensus       135 d  135 (236)
T 1zx0_A          135 D  135 (236)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.48  E-value=1.1e-13  Score=110.98  Aligned_cols=104  Identities=17%  Similarity=0.209  Sum_probs=80.5

Q ss_pred             CCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460         19 NPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI   97 (216)
Q Consensus        19 ~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~   97 (216)
                      .++..++| |.+...+.+.++..+..    .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++.+ .   .
T Consensus         4 ~~~k~~GQnfl~d~~i~~~iv~~~~~----~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---~   75 (249)
T 3ftd_A            4 RLKKSFGQHLLVSEGVLKKIAEELNI----EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---D   75 (249)
T ss_dssp             ----CCCSSCEECHHHHHHHHHHTTC----CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---C
T ss_pred             CCCCcccccccCCHHHHHHHHHhcCC----CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---C
Confidence            46677888 77778888888776643    47889999999999999999998657999999999999999887 2   2


Q ss_pred             CceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         98 TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        98 ~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      .+++++.+|+  .++++....+. ..|++|+||...
T Consensus        76 ~~v~~i~~D~--~~~~~~~~~~~-~~vv~NlPy~i~  108 (249)
T 3ftd_A           76 ERLEVINEDA--SKFPFCSLGKE-LKVVGNLPYNVA  108 (249)
T ss_dssp             TTEEEECSCT--TTCCGGGSCSS-EEEEEECCTTTH
T ss_pred             CCeEEEEcch--hhCChhHccCC-cEEEEECchhcc
Confidence            3799999999  77655421123 489999999743

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.48  E-value=2.1e-13  Score=107.35  Aligned_cols=74  Identities=15%  Similarity=0.157  Sum_probs=64.8

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|.+++.+++.++ .+|+++|+++.+++.|+.|+..+++. +++++.+|.  .+.....  ++||+|++
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~--l~~l~~~--~~~D~Ivi   90 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG--LAAFEET--DQVSVITI   90 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG--GGGCCGG--GCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECch--hhhcccC--cCCCEEEE
Confidence            678999999999999999999875 78999999999999999999999987 599999999  7654321  36998885

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.48  E-value=1.6e-13  Score=119.61  Aligned_cols=80  Identities=29%  Similarity=0.368  Sum_probs=68.9

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ...++.+|||+|||+|.+++.+++.+..+|+|+|+++ +++.|++++..+++. +++++.+|+  .+++..   ++||+|
T Consensus       155 ~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~--~~~~~~---~~fD~I  228 (480)
T 3b3j_A          155 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKV--EEVSLP---EQVDII  228 (480)
T ss_dssp             GGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCT--TTCCCS---SCEEEE
T ss_pred             hhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECch--hhCccC---CCeEEE
Confidence            3347889999999999999999988767999999998 999999999998884 799999999  665433   689999


Q ss_pred             EEcCCCC
Q psy17460        125 IMNPPFG  131 (216)
Q Consensus       125 i~npp~~  131 (216)
                      ++++++.
T Consensus       229 vs~~~~~  235 (480)
T 3b3j_A          229 ISEPMGY  235 (480)
T ss_dssp             ECCCCHH
T ss_pred             EEeCchH
Confidence            9999843

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.47  E-value=3.2e-13  Score=106.77  Aligned_cols=121  Identities=16%  Similarity=0.124  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS  111 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  111 (216)
                      ...+.+...+...  ..++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.+....+. +++++.+|+  .+
T Consensus        22 ~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~--~~   95 (246)
T 1y8c_A           22 KWSDFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDI--SN   95 (246)
T ss_dssp             HHHHHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCG--GG
T ss_pred             HHHHHHHHHHHHh--CCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC-CeEEEeccc--cc
Confidence            3444455554432  12678999999999999999998865 899999999999999999988776 799999999  66


Q ss_pred             cccccccCcccEEEEcC-CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        112 LDSSVFKQKVDTVIMNP-PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       112 ~~~~~~~~~~D~vi~np-p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      .+..   ++||+|+++. .+++...                      ......+++.+.++|+| +|.++++..
T Consensus        96 ~~~~---~~fD~v~~~~~~l~~~~~----------------------~~~~~~~l~~~~~~L~p-gG~l~~~~~  143 (246)
T 1y8c_A           96 LNIN---RKFDLITCCLDSTNYIID----------------------SDDLKKYFKAVSNHLKE-GGVFIFDIN  143 (246)
T ss_dssp             CCCS---CCEEEEEECTTGGGGCCS----------------------HHHHHHHHHHHHTTEEE-EEEEEEEEE
T ss_pred             CCcc---CCceEEEEcCccccccCC----------------------HHHHHHHHHHHHHhcCC-CcEEEEEec
Confidence            6544   6899999987 7654310                      01234566667777888 888777543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.47  E-value=2.4e-13  Score=105.69  Aligned_cols=145  Identities=12%  Similarity=0.106  Sum_probs=97.9

Q ss_pred             chHHHHHHHHHhhcccCCC-cccCc------cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC--C
Q psy17460          2 KLKHIEQYLQQLTFNFSNP-KVHLE------QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG--A   72 (216)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~-~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~--~   72 (216)
                      +.+.+++++.+. ..-.++ -..+.      .++........++..+...   .++.+|||+|||+|..+..++...  .
T Consensus         6 ~~~~~~~y~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~   81 (210)
T 3c3p_A            6 VDSRIGAYLDGL-LPEADPVVAAMEQIARERNIPIVDRQTGRLLYLLARI---KQPQLVVVPGDGLGCASWWFARAISIS   81 (210)
T ss_dssp             BCHHHHHHHHHT-SCSCCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH---HCCSEEEEESCGGGHHHHHHHTTSCTT
T ss_pred             hHHHHHHHHHHh-cCCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHh---hCCCEEEEEcCCccHHHHHHHHhCCCC
Confidence            356677777666 322221 01111      1243444444455444432   267799999999999999988763  3


Q ss_pred             CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460         73 DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus        73 ~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      .+|+++|+++.+++.|++++...++. +++++.+|+  .+..... .+ ||+|+++.+..                    
T Consensus        82 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~-~~-fD~v~~~~~~~--------------------  137 (210)
T 3c3p_A           82 SRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDP--LGIAAGQ-RD-IDILFMDCDVF--------------------  137 (210)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCH--HHHHTTC-CS-EEEEEEETTTS--------------------
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecH--HHHhccC-CC-CCEEEEcCChh--------------------
Confidence            69999999999999999999888875 699999999  6642221 15 99999986421                    


Q ss_pred             eEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        152 VYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       152 ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                              ....+++.+.++|+| +|.++++.
T Consensus       138 --------~~~~~l~~~~~~Lkp-gG~lv~~~  160 (210)
T 3c3p_A          138 --------NGADVLERMNRCLAK-NALLIAVN  160 (210)
T ss_dssp             --------CHHHHHHHHGGGEEE-EEEEEEES
T ss_pred             --------hhHHHHHHHHHhcCC-CeEEEEEC
Confidence                    123456667778888 88887743

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.47  E-value=7.7e-13  Score=104.70  Aligned_cols=119  Identities=17%  Similarity=0.136  Sum_probs=90.4

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN  108 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  108 (216)
                      +...+...++..+    ...++.+|||+|||+|.++..+++.+..+|+++|+++.+++.++.++...++.+++++.+|+ 
T Consensus        75 ~~~~~~~~~~~~l----~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-  149 (235)
T 1jg1_A           75 SAPHMVAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-  149 (235)
T ss_dssp             CCHHHHHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-
T ss_pred             ccHHHHHHHHHhc----CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-
Confidence            3445555555554    33478899999999999999988875368999999999999999999988887899999997 


Q ss_pred             ccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCC
Q psy17460        109 EKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDL  187 (216)
Q Consensus       109 ~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  187 (216)
                       .......  .+||+|+++.++...                               ...+.+.|+| +|.+++..+...
T Consensus       150 -~~~~~~~--~~fD~Ii~~~~~~~~-------------------------------~~~~~~~L~p-gG~lvi~~~~~~  193 (235)
T 1jg1_A          150 -SKGFPPK--APYDVIIVTAGAPKI-------------------------------PEPLIEQLKI-GGKLIIPVGSYH  193 (235)
T ss_dssp             -GGCCGGG--CCEEEEEECSBBSSC-------------------------------CHHHHHTEEE-EEEEEEEECSSS
T ss_pred             -ccCCCCC--CCccEEEECCcHHHH-------------------------------HHHHHHhcCC-CcEEEEEEecCC
Confidence             3322221  469999998876533                               1135677899 999998777543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.47  E-value=7e-13  Score=103.98  Aligned_cols=105  Identities=10%  Similarity=0.060  Sum_probs=81.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccccc----Ccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFK----QKV  121 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~----~~~  121 (216)
                      ++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.++.++...++. +++++.+|+  .+.......    ++|
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA--KDTLAELIHAGQAWQY  141 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH--HHHHHHHHTTTCTTCE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH--HHHHHHhhhccCCCCc
Confidence            6789999999999999998886 2 369999999999999999999998886 599999999  654322111    589


Q ss_pred             cEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        122 DTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       122 D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      |+|+++++..                            ....+++.+.++|+| +|.+++..-
T Consensus       142 D~v~~~~~~~----------------------------~~~~~l~~~~~~L~p-gG~lv~~~~  175 (225)
T 3tr6_A          142 DLIYIDADKA----------------------------NTDLYYEESLKLLRE-GGLIAVDNV  175 (225)
T ss_dssp             EEEEECSCGG----------------------------GHHHHHHHHHHHEEE-EEEEEEECS
T ss_pred             cEEEECCCHH----------------------------HHHHHHHHHHHhcCC-CcEEEEeCC
Confidence            9999988632                            123455566777788 777776443

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.47  E-value=8.2e-13  Score=103.77  Aligned_cols=121  Identities=20%  Similarity=0.268  Sum_probs=91.8

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC------CEEEEEeCChHHHHHHHHhhhHhC-----
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA------DFCFALECDKEILDIFIDNKNEFE-----   96 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~------~~v~~iD~~~~~~~~~~~~~~~~~-----   96 (216)
                      .....+...++..+..  ...++.+|||+|||+|.++..+++...      .+|+++|+++.+++.++.++...+     
T Consensus        61 ~~~p~~~~~~~~~l~~--~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~  138 (227)
T 2pbf_A           61 ISAPHMHALSLKRLIN--VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLK  138 (227)
T ss_dssp             ECCHHHHHHHHHHHTT--TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGS
T ss_pred             cCChHHHHHHHHHHHh--hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccc
Confidence            3344555566665542  124678999999999999998888642      599999999999999999998877     


Q ss_pred             CCceEEEEecccccccc----cccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhc
Q psy17460         97 ITNCDAILFEINEKSLD----SSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFK  172 (216)
Q Consensus        97 ~~~v~~~~~d~~~~~~~----~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l  172 (216)
                      ..+++++.+|+  .+..    ...  ++||+|+++.+++..                               ++.+.++|
T Consensus       139 ~~~v~~~~~d~--~~~~~~~~~~~--~~fD~I~~~~~~~~~-------------------------------~~~~~~~L  183 (227)
T 2pbf_A          139 IDNFKIIHKNI--YQVNEEEKKEL--GLFDAIHVGASASEL-------------------------------PEILVDLL  183 (227)
T ss_dssp             STTEEEEECCG--GGCCHHHHHHH--CCEEEEEECSBBSSC-------------------------------CHHHHHHE
T ss_pred             cCCEEEEECCh--HhcccccCccC--CCcCEEEECCchHHH-------------------------------HHHHHHhc
Confidence            45899999999  6643    222  689999999876532                               23457788


Q ss_pred             CccceeeeeeeecC
Q psy17460        173 NVEQVDVIAEMKYD  186 (216)
Q Consensus       173 ~~~~g~~~~~~~~~  186 (216)
                      +| +|.+++..+..
T Consensus       184 kp-gG~lv~~~~~~  196 (227)
T 2pbf_A          184 AE-NGKLIIPIEED  196 (227)
T ss_dssp             EE-EEEEEEEEEET
T ss_pred             CC-CcEEEEEEccC
Confidence            99 99998877653

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.47  E-value=5.2e-13  Score=107.19  Aligned_cols=115  Identities=15%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL  112 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  112 (216)
                      ..+.+...+...+  .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+.+..     +++++.+|+  .++
T Consensus        36 ~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~--~~~  105 (263)
T 3pfg_A           36 EAADLAALVRRHS--PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP-----DAVLHHGDM--RDF  105 (263)
T ss_dssp             HHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT-----TSEEEECCT--TTC
T ss_pred             HHHHHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCEEEECCh--HHC
Confidence            3344555555432  2567999999999999999998875 89999999999999998864     689999999  776


Q ss_pred             ccccccCcccEEEEcC-CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        113 DSSVFKQKVDTVIMNP-PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       113 ~~~~~~~~~D~vi~np-p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      +..   ++||+|+|+. .+++..                      .......+++.+.++|+| +|.++++.
T Consensus       106 ~~~---~~fD~v~~~~~~l~~~~----------------------~~~~~~~~l~~~~~~L~p-gG~l~i~~  151 (263)
T 3pfg_A          106 SLG---RRFSAVTCMFSSIGHLA----------------------GQAELDAALERFAAHVLP-DGVVVVEP  151 (263)
T ss_dssp             CCS---CCEEEEEECTTGGGGSC----------------------HHHHHHHHHHHHHHTEEE-EEEEEECC
T ss_pred             Ccc---CCcCEEEEcCchhhhcC----------------------CHHHHHHHHHHHHHhcCC-CcEEEEEe
Confidence            653   7999999986 665431                      011234567778889999 99999863

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.47  E-value=6.7e-13  Score=109.84  Aligned_cols=82  Identities=16%  Similarity=0.141  Sum_probs=70.7

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ..++.+|||+|||+|..+..++...  ..+|+|+|+++.+++.++.++..+++.+++++.+|+  .+++..  .++||+|
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~--~~~~~~--~~~fD~I  191 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS--LHIGEL--NVEFDKI  191 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG--GGGGGG--CCCEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh--hhcccc--cccCCEE
Confidence            3578899999999999999988763  369999999999999999999999987899999999  665532  2689999


Q ss_pred             EEcCCCCC
Q psy17460        125 IMNPPFGT  132 (216)
Q Consensus       125 i~npp~~~  132 (216)
                      ++|||+..
T Consensus       192 l~d~Pcsg  199 (315)
T 1ixk_A          192 LLDAPCTG  199 (315)
T ss_dssp             EEECCTTS
T ss_pred             EEeCCCCC
Confidence            99999753

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.47  E-value=1.1e-12  Score=106.82  Aligned_cols=125  Identities=16%  Similarity=0.158  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC----CceEEEEec
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI----TNCDAILFE  106 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~----~~v~~~~~d  106 (216)
                      ..+...+...+..    .++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|+++....+.    .++.+..+|
T Consensus        43 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d  117 (293)
T 3thr_A           43 AEYKAWLLGLLRQ----HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN  117 (293)
T ss_dssp             HHHHHHHHHHHHH----TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred             HHHHHHHHHHhcc----cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecC
Confidence            3444555555443    3678999999999999999999876 999999999999999988744332    268899999


Q ss_pred             ccccccc---cccccCcccEEEEc-CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        107 INEKSLD---SSVFKQKVDTVIMN-PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       107 ~~~~~~~---~~~~~~~~D~vi~n-pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      +  .+++   ...  ++||+|+|+ ..+++.....                  ........+++.+.++|+| +|.+++.
T Consensus       118 ~--~~~~~~~~~~--~~fD~V~~~g~~l~~~~~~~------------------~~~~~~~~~l~~~~~~Lkp-gG~l~~~  174 (293)
T 3thr_A          118 W--LTLDKDVPAG--DGFDAVICLGNSFAHLPDSK------------------GDQSEHRLALKNIASMVRP-GGLLVID  174 (293)
T ss_dssp             G--GGHHHHSCCT--TCEEEEEECTTCGGGSCCSS------------------SSSHHHHHHHHHHHHTEEE-EEEEEEE
T ss_pred             h--hhCccccccC--CCeEEEEEcChHHhhcCccc------------------cCHHHHHHHHHHHHHHcCC-CeEEEEE
Confidence            9  6655   322  799999997 5665441100                  0011245667777788888 8888765


Q ss_pred             e
Q psy17460        183 M  183 (216)
Q Consensus       183 ~  183 (216)
                      .
T Consensus       175 ~  175 (293)
T 3thr_A          175 H  175 (293)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.47  E-value=1e-12  Score=102.95  Aligned_cols=106  Identities=10%  Similarity=0.036  Sum_probs=82.7

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccc---cCccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVF---KQKVD  122 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~---~~~~D  122 (216)
                      ++.+|||+|||+|..+..++...  ..+|+++|+++.+++.++.++...++. +++++.+|+  .+......   .++||
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLA--LDSLQQIENEKYEPFD  135 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH--HHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH--HHHHHHHHhcCCCCcC
Confidence            67899999999999999988873  259999999999999999999988886 599999999  65432211   14799


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460        123 TVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       123 ~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      +|+++++..                            ....+++.+.+.|+| +|.+++....
T Consensus       136 ~v~~d~~~~----------------------------~~~~~l~~~~~~L~p-gG~lv~~~~~  169 (223)
T 3duw_A          136 FIFIDADKQ----------------------------NNPAYFEWALKLSRP-GTVIIGDNVV  169 (223)
T ss_dssp             EEEECSCGG----------------------------GHHHHHHHHHHTCCT-TCEEEEESCS
T ss_pred             EEEEcCCcH----------------------------HHHHHHHHHHHhcCC-CcEEEEeCCC
Confidence            999988632                            113456667788888 8888775443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.46  E-value=7.3e-13  Score=107.78  Aligned_cols=104  Identities=15%  Similarity=0.159  Sum_probs=83.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .++.+|||+|||+|..+..++...+  .+|+|+|+|+.+++.++.++...+. +++++.+|+  .+++..   ++||+|+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~--~~~~~~---~~fD~v~   94 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDA--TEIELN---DKYDIAI   94 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCT--TTCCCS---SCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcch--hhcCcC---CCeeEEE
Confidence            4678999999999999999988732  5999999999999999999887766 899999999  776653   6999999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        126 MNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       126 ~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      ++..+++.                         .+...+++.+.++|+| +|.+++..
T Consensus        95 ~~~~l~~~-------------------------~~~~~~l~~~~~~Lkp-gG~l~~~~  126 (284)
T 3gu3_A           95 CHAFLLHM-------------------------TTPETMLQKMIHSVKK-GGKIICFE  126 (284)
T ss_dssp             EESCGGGC-------------------------SSHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred             ECChhhcC-------------------------CCHHHHHHHHHHHcCC-CCEEEEEe
Confidence            98876544                         1234566667777788 77777543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.46  E-value=2.9e-13  Score=112.04  Aligned_cols=95  Identities=17%  Similarity=0.150  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN  108 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  108 (216)
                      ..+...++..+    ...++.+|||+|||+|.++..+++.+.  .+|+|+|+++++++.++.++...++++++++.+|+ 
T Consensus        61 ~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~-  135 (317)
T 1dl5_A           61 PSLMALFMEWV----GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG-  135 (317)
T ss_dssp             HHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-
T ss_pred             HHHHHHHHHhc----CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECCh-
Confidence            34444444443    345788999999999999999888743  57999999999999999999988887899999999 


Q ss_pred             ccccccccccCcccEEEEcCCCCCC
Q psy17460        109 EKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       109 ~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                       .+.+...  ++||+|++++++++.
T Consensus       136 -~~~~~~~--~~fD~Iv~~~~~~~~  157 (317)
T 1dl5_A          136 -YYGVPEF--SPYDVIFVTVGVDEV  157 (317)
T ss_dssp             -GGCCGGG--CCEEEEEECSBBSCC
T ss_pred             -hhccccC--CCeEEEEEcCCHHHH
Confidence             6644332  689999999988754

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.46  E-value=4e-13  Score=106.57  Aligned_cols=108  Identities=11%  Similarity=0.035  Sum_probs=84.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|.++..++..+..+|+|+|+++.+++.++.++...+..+++++.+|+  .+.+...  ++||+|+++.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~--~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL--QDFTPEP--DSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG--GGCCCCS--SCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh--hhcCCCC--CCEEEEEEcc
Confidence            57899999999999999988876669999999999999999998776433799999999  6665442  6899999987


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      .+++...                       .....+++.+.++|+| +|.+++...
T Consensus       155 ~l~~~~~-----------------------~~~~~~l~~~~~~Lkp-gG~l~i~~~  186 (241)
T 2ex4_A          155 VIGHLTD-----------------------QHLAEFLRRCKGSLRP-NGIIVIKDN  186 (241)
T ss_dssp             CGGGSCH-----------------------HHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred             hhhhCCH-----------------------HHHHHHHHHHHHhcCC-CeEEEEEEc
Confidence            6654310                       0123566677788888 888877443

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.46  E-value=4.4e-13  Score=105.86  Aligned_cols=80  Identities=13%  Similarity=0.073  Sum_probs=67.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|.++..++..+. +|+|+|+++.+++.++.++...+. .+++++.+|+  .+.+..   ++||+|+++
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~---~~fD~v~~~  139 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDV--FTWRPT---ELFDLIFDY  139 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCT--TTCCCS---SCEEEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECch--hcCCCC---CCeeEEEEC
Confidence            445999999999999999887654 899999999999999999876433 2799999999  776643   699999999


Q ss_pred             CCCCCCC
Q psy17460        128 PPFGTRN  134 (216)
Q Consensus       128 pp~~~~~  134 (216)
                      ..+++..
T Consensus       140 ~~l~~~~  146 (235)
T 3lcc_A          140 VFFCAIE  146 (235)
T ss_dssp             SSTTTSC
T ss_pred             hhhhcCC
Confidence            8888763

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.46  E-value=1.8e-12  Score=103.62  Aligned_cols=79  Identities=14%  Similarity=0.016  Sum_probs=66.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc-cccCcccEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS-VFKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~-~~~~~~D~v  124 (216)
                      ++.+|||+|||+|..+..++...  ..+|+++|+++.+++.|+.++...++. +++++.+|+  .+.... ...++||+|
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~--~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPA--LQSLESLGECPAFDLI  140 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCH--HHHHHTCCSCCCCSEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH--HHHHHhcCCCCCeEEE
Confidence            67899999999999999988862  369999999999999999999998886 799999999  663222 112489999


Q ss_pred             EEcCC
Q psy17460        125 IMNPP  129 (216)
Q Consensus       125 i~npp  129 (216)
                      +++.+
T Consensus       141 ~~d~~  145 (248)
T 3tfw_A          141 FIDAD  145 (248)
T ss_dssp             EECSC
T ss_pred             EECCc
Confidence            99875

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.46  E-value=5.8e-13  Score=102.73  Aligned_cols=101  Identities=14%  Similarity=0.080  Sum_probs=80.6

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCC
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      +.+|||+|||+|.++..++..+. +++|+|+++.+++.++.+..     +++++.+|+  .+++...  ++||+|+++..
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~--~~~~~~~--~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP-----SVTFHHGTI--TDLSDSP--KRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT-----TSEEECCCG--GGGGGSC--CCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCC-----CCeEEeCcc--cccccCC--CCeEEEEehhh
Confidence            77999999999999999998866 89999999999999998733     789999999  6665433  79999999887


Q ss_pred             CCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        130 FGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      +++..                       ......+++.+.++|+| +|.+++...
T Consensus       112 l~~~~-----------------------~~~~~~~l~~~~~~L~p-gG~l~i~~~  142 (203)
T 3h2b_A          112 LIHMG-----------------------PGELPDALVALRMAVED-GGGLLMSFF  142 (203)
T ss_dssp             STTCC-----------------------TTTHHHHHHHHHHTEEE-EEEEEEEEE
T ss_pred             HhcCC-----------------------HHHHHHHHHHHHHHcCC-CcEEEEEEc
Confidence            76542                       12345666677778888 887777553

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.46  E-value=9.7e-13  Score=106.70  Aligned_cols=103  Identities=17%  Similarity=0.151  Sum_probs=80.8

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccccccccccCccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      ...++.+|||+|||+|.++..++.. ++ .+|+++|+++.+++.|+.++...++ ++++++.+|+  .+....   ++||
T Consensus       109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~---~~~D  183 (277)
T 1o54_A          109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI--SEGFDE---KDVD  183 (277)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG--GGCCSC---CSEE
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH--HHcccC---CccC
Confidence            4457889999999999999998887 54 7999999999999999999988887 3799999999  665322   6899


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEee
Q psy17460        123 TVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHK  157 (216)
Q Consensus       123 ~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~  157 (216)
                      +|++|+|...    ...+.+.+++++++.++...+
T Consensus       184 ~V~~~~~~~~----~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          184 ALFLDVPDPW----NYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             EEEECCSCGG----GTHHHHHHHEEEEEEEEEEES
T ss_pred             EEEECCcCHH----HHHHHHHHHcCCCCEEEEEeC
Confidence            9999998542    334445566666665555544

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.46  E-value=1.1e-12  Score=103.17  Aligned_cols=118  Identities=17%  Similarity=0.075  Sum_probs=89.6

Q ss_pred             cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEe
Q psy17460         26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF  105 (216)
Q Consensus        26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~  105 (216)
                      +..+...+...++..+    ...++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.++.++...+  +++++.+
T Consensus        51 ~~~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~  123 (231)
T 1vbf_A           51 INTTALNLGIFMLDEL----DLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN--NIKLILG  123 (231)
T ss_dssp             EEECCHHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS--SEEEEES
T ss_pred             CccCCHHHHHHHHHhc----CCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEEC
Confidence            3334455555555544    33578899999999999999999887 599999999999999999988766  7999999


Q ss_pred             cccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      |+  .+.....  ++||+|+++.++++..                               ..+.++|+| +|.+++..+.
T Consensus       124 d~--~~~~~~~--~~fD~v~~~~~~~~~~-------------------------------~~~~~~L~p-gG~l~~~~~~  167 (231)
T 1vbf_A          124 DG--TLGYEEE--KPYDRVVVWATAPTLL-------------------------------CKPYEQLKE-GGIMILPIGV  167 (231)
T ss_dssp             CG--GGCCGGG--CCEEEEEESSBBSSCC-------------------------------HHHHHTEEE-EEEEEEEECS
T ss_pred             Cc--ccccccC--CCccEEEECCcHHHHH-------------------------------HHHHHHcCC-CcEEEEEEcC
Confidence            99  6532222  6899999998776431                               125667788 8888887664


Q ss_pred             C
Q psy17460        186 D  186 (216)
Q Consensus       186 ~  186 (216)
                      .
T Consensus       168 ~  168 (231)
T 1vbf_A          168 G  168 (231)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.46  E-value=1.1e-12  Score=103.70  Aligned_cols=105  Identities=13%  Similarity=0.196  Sum_probs=81.9

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ...++.+|||+|||+|.++..++..+..+++|+|+++.+++.++.+...   .+++++.+|+  .+.+...  ++||+|+
T Consensus        40 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~--~~~~~~~--~~fD~v~  112 (243)
T 3bkw_A           40 PEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADL--DKLHLPQ--DSFDLAY  112 (243)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCG--GGCCCCT--TCEEEEE
T ss_pred             cccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcCh--hhccCCC--CCceEEE
Confidence            3457889999999999999999988666999999999999999988754   2689999999  6665432  7899999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        126 MNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       126 ~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      ++.++++.                         .+...+++.+.++|+| +|.+++..
T Consensus       113 ~~~~l~~~-------------------------~~~~~~l~~~~~~L~p-gG~l~~~~  144 (243)
T 3bkw_A          113 SSLALHYV-------------------------EDVARLFRTVHQALSP-GGHFVFST  144 (243)
T ss_dssp             EESCGGGC-------------------------SCHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             Eecccccc-------------------------chHHHHHHHHHHhcCc-CcEEEEEe
Confidence            98876644                         1234566666777777 77777654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.45  E-value=5.2e-13  Score=107.56  Aligned_cols=81  Identities=14%  Similarity=0.164  Sum_probs=61.3

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccc-ccccccCcccEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL-DSSVFKQKVDTV  124 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~~D~v  124 (216)
                      ...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++.++...      ++.+++.+... ......++||+|
T Consensus        42 ~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~~~~~fD~V  114 (261)
T 3iv6_A           42 NIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKELAGHFDFV  114 (261)
T ss_dssp             TCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGGGTTCCSEE
T ss_pred             CCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccccCCCccEE
Confidence            445788999999999999999999875 9999999999999999998653      33444421222 001112689999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      +++..+++.
T Consensus       115 v~~~~l~~~  123 (261)
T 3iv6_A          115 LNDRLINRF  123 (261)
T ss_dssp             EEESCGGGS
T ss_pred             EEhhhhHhC
Confidence            999988765

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.1e-12  Score=107.38  Aligned_cols=83  Identities=16%  Similarity=0.100  Sum_probs=67.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHh-C-CCceEEEEeccccccccccc----ccCc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEF-E-ITNCDAILFEINEKSLDSSV----FKQK  120 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~-~-~~~v~~~~~d~~~~~~~~~~----~~~~  120 (216)
                      ++.+|||+|||+|..+..++..  ...+|+|+|+|+.+++.|+.++... + ..+++++.+|+  .+++...    ..++
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~--~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS--DDFKFLGADSVDKQK  113 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT--TCCGGGCTTTTTSSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH--HhCCccccccccCCC
Confidence            6889999999999999999863  3479999999999999999998876 2 23899999999  6655331    1158


Q ss_pred             ccEEEEcCCCCCC
Q psy17460        121 VDTVIMNPPFGTR  133 (216)
Q Consensus       121 ~D~vi~npp~~~~  133 (216)
                      ||+|+++..+++.
T Consensus       114 fD~V~~~~~l~~~  126 (299)
T 3g5t_A          114 IDMITAVECAHWF  126 (299)
T ss_dssp             EEEEEEESCGGGS
T ss_pred             eeEEeHhhHHHHh
Confidence            9999999887765

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.45  E-value=4.4e-13  Score=106.05  Aligned_cols=87  Identities=10%  Similarity=0.058  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc
Q psy17460         34 AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD  113 (216)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  113 (216)
                      .+.++..+...   .++.+|||+|||+|.++..++..++ +|+|+|+++.+++.|+.+...    +++++.+|+  .+..
T Consensus        30 ~~~~~~~l~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~--~~~~   99 (250)
T 2p7i_A           30 HPFMVRAFTPF---FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----GITYIHSRF--EDAQ   99 (250)
T ss_dssp             HHHHHHHHGGG---CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----CEEEEESCG--GGCC
T ss_pred             HHHHHHHHHhh---cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC----CeEEEEccH--HHcC
Confidence            34444544432   3677899999999999999998876 899999999999999998754    689999999  5553


Q ss_pred             cccccCcccEEEEcCCCCCC
Q psy17460        114 SSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       114 ~~~~~~~~D~vi~npp~~~~  133 (216)
                      ..   ++||+|++...+++.
T Consensus       100 ~~---~~fD~v~~~~~l~~~  116 (250)
T 2p7i_A          100 LP---RRYDNIVLTHVLEHI  116 (250)
T ss_dssp             CS---SCEEEEEEESCGGGC
T ss_pred             cC---CcccEEEEhhHHHhh
Confidence            22   789999998776644

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.45  E-value=1.1e-12  Score=103.55  Aligned_cols=97  Identities=9%  Similarity=0.111  Sum_probs=75.4

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEe
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILF  105 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~  105 (216)
                      .........+...+...    ++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.|+.++...++. +++++.+
T Consensus        37 ~~~~~~~~~l~~~~~~~----~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  112 (233)
T 2gpy_A           37 IMDLLGMESLLHLLKMA----APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG  112 (233)
T ss_dssp             CCCHHHHHHHHHHHHHH----CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred             CcCHHHHHHHHHHHhcc----CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            34455555555555443    678999999999999999888753 69999999999999999999988875 6999999


Q ss_pred             ccccccccccc-ccCcccEEEEcCCC
Q psy17460        106 EINEKSLDSSV-FKQKVDTVIMNPPF  130 (216)
Q Consensus       106 d~~~~~~~~~~-~~~~~D~vi~npp~  130 (216)
                      |+  .+..... ..++||+|+++++.
T Consensus       113 d~--~~~~~~~~~~~~fD~I~~~~~~  136 (233)
T 2gpy_A          113 DA--LQLGEKLELYPLFDVLFIDAAK  136 (233)
T ss_dssp             CG--GGSHHHHTTSCCEEEEEEEGGG
T ss_pred             CH--HHHHHhcccCCCccEEEECCCH
Confidence            99  6642211 02689999998874

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.45  E-value=3.2e-13  Score=109.88  Aligned_cols=104  Identities=17%  Similarity=0.171  Sum_probs=79.8

Q ss_pred             CCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCC---EEEEEeCChHHHHHHHHhhhH
Q psy17460         19 NPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGAD---FCFALECDKEILDIFIDNKNE   94 (216)
Q Consensus        19 ~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~---~v~~iD~~~~~~~~~~~~~~~   94 (216)
                      .++..++| |.+...+.+.++..+..    .++.+|||+|||+|.++..++..+..   +|+|+|+|+++++.++.+.  
T Consensus        15 ~~~k~~GQ~fL~d~~i~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--   88 (279)
T 3uzu_A           15 FARKRFGQNFLVDHGVIDAIVAAIRP----ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--   88 (279)
T ss_dssp             ---CCCSCCEECCHHHHHHHHHHHCC----CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--
T ss_pred             CccccCCccccCCHHHHHHHHHhcCC----CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--
Confidence            57778887 77788888888777643    47889999999999999999987542   2999999999999999983  


Q ss_pred             hCCCceEEEEecccccccccccccC----cccEEEEcCCCCC
Q psy17460         95 FEITNCDAILFEINEKSLDSSVFKQ----KVDTVIMNPPFGT  132 (216)
Q Consensus        95 ~~~~~v~~~~~d~~~~~~~~~~~~~----~~D~vi~npp~~~  132 (216)
                        ..+++++.+|+  .++++.....    ..+.|++|+||..
T Consensus        89 --~~~v~~i~~D~--~~~~~~~~~~~~~~~~~~vv~NlPY~i  126 (279)
T 3uzu_A           89 --GELLELHAGDA--LTFDFGSIARPGDEPSLRIIGNLPYNI  126 (279)
T ss_dssp             --GGGEEEEESCG--GGCCGGGGSCSSSSCCEEEEEECCHHH
T ss_pred             --CCCcEEEECCh--hcCChhHhcccccCCceEEEEccCccc
Confidence              22899999999  6665542111    3458999999964

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.45  E-value=6.6e-13  Score=107.68  Aligned_cols=108  Identities=22%  Similarity=0.186  Sum_probs=79.8

Q ss_pred             HHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHh-CCCceEEEEecccccccccccc
Q psy17460         41 IQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEF-EITNCDAILFEINEKSLDSSVF  117 (216)
Q Consensus        41 ~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~  117 (216)
                      +...+...++.+|||+|||+|.++..+++. ++ .+|+++|+++.+++.++.++..+ +.++++++.+|+  .+....  
T Consensus       102 ~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~--~~~~~~--  177 (275)
T 1yb2_A          102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI--ADFISD--  177 (275)
T ss_dssp             ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT--TTCCCS--
T ss_pred             HHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECch--hccCcC--
Confidence            333334567889999999999999998886 33 69999999999999999999887 766899999999  653222  


Q ss_pred             cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEee
Q psy17460        118 KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHK  157 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~  157 (216)
                       ++||+|++++|-    .....+.+.+.+++++.++....
T Consensus       178 -~~fD~Vi~~~~~----~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          178 -QMYDAVIADIPD----PWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             -CCEEEEEECCSC----GGGSHHHHHHTEEEEEEEEEEES
T ss_pred             -CCccEEEEcCcC----HHHHHHHHHHHcCCCCEEEEEeC
Confidence             689999998873    22334445555666665554443

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.45  E-value=1e-12  Score=106.95  Aligned_cols=82  Identities=15%  Similarity=0.136  Sum_probs=68.8

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|..+..++..+..+++|+|+++.+++.|+.++...+.. +++++.+|+  .+.+.. ..++||+|++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~-~~~~fD~v~~  139 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS--YGRHMD-LGKEFDVISS  139 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT--TTSCCC-CSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCc--cccccC-CCCCcCEEEE
Confidence            467899999999999998888877679999999999999999999877663 799999999  665541 1278999999


Q ss_pred             cCCCCC
Q psy17460        127 NPPFGT  132 (216)
Q Consensus       127 npp~~~  132 (216)
                      +..+++
T Consensus       140 ~~~l~~  145 (298)
T 1ri5_A          140 QFSFHY  145 (298)
T ss_dssp             ESCGGG
T ss_pred             Cchhhh
Confidence            877654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.45  E-value=2.8e-12  Score=110.19  Aligned_cols=94  Identities=16%  Similarity=0.265  Sum_probs=77.6

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      |.......+.++..+...   .++.+|||+|||+|.+++.+++.+ .+|+|+|+++.+++.|+.|+..++++ ++++.+|
T Consensus       271 ~q~n~~~~e~l~~~~~~~---~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d  345 (425)
T 2jjq_A          271 FQTNSYQAVNLVRKVSEL---VEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVAS  345 (425)
T ss_dssp             CCSBHHHHHHHHHHHHHH---CCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             cccCHHHHHHHHHHhhcc---CCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECC
Confidence            444455666666666542   367899999999999999999875 49999999999999999999999986 9999999


Q ss_pred             ccccccccccccCcccEEEEcCCCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      +  .++..    .+||+|++|||+.
T Consensus       346 ~--~~~~~----~~fD~Vv~dPPr~  364 (425)
T 2jjq_A          346 D--REVSV----KGFDTVIVDPPRA  364 (425)
T ss_dssp             T--TTCCC----TTCSEEEECCCTT
T ss_pred             h--HHcCc----cCCCEEEEcCCcc
Confidence            9  66643    3899999999964

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.45  E-value=1.4e-12  Score=100.80  Aligned_cols=105  Identities=14%  Similarity=0.069  Sum_probs=77.0

Q ss_pred             CCCEEEEecCCCCHhHHH-HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFG-SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~-~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|..+.. ++..+ .+++|+|+|+.+++.++.++...+. +++++.+|+  .+.+...  ++||+|+++
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~--~~~~~~~--~~fD~v~~~   96 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENFSRENNF-KLNISKGDI--RKLPFKD--ESMSFVYSY   96 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTT-CEEEEEECCHHHHHHHHHHHHHHTC-CCCEEECCT--TSCCSCT--TCEEEEEEC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCC-ceEEEECch--hhCCCCC--CceeEEEEc
Confidence            578999999999998544 44444 4999999999999999999887664 799999999  6665432  689999998


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      .++++..                       ......+++.+.++|+| +|.+++..
T Consensus        97 ~~l~~~~-----------------------~~~~~~~l~~~~~~Lkp-gG~l~~~~  128 (209)
T 2p8j_A           97 GTIFHMR-----------------------KNDVKEAIDEIKRVLKP-GGLACINF  128 (209)
T ss_dssp             SCGGGSC-----------------------HHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             ChHHhCC-----------------------HHHHHHHHHHHHHHcCC-CcEEEEEE
Confidence            7665431                       01233455556666677 66666543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.44  E-value=1.5e-12  Score=102.78  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=64.1

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc----cccccccCc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS----LDSSVFKQK  120 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~~~~  120 (216)
                      ...++.+|||+|||+|.++..++.. +..+|+|+|+++.+++.++.++..+  +++.++.+|+  .+    .+..   ++
T Consensus        71 ~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~--~~~~~~~~~~---~~  143 (230)
T 1fbn_A           71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDA--NKPQEYANIV---EK  143 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCT--TCGGGGTTTS---CC
T ss_pred             CCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCC--CCcccccccC---cc
Confidence            3457889999999999999998887 4479999999999999999998765  4899999999  55    3322   68


Q ss_pred             ccEEEEcCC
Q psy17460        121 VDTVIMNPP  129 (216)
Q Consensus       121 ~D~vi~npp  129 (216)
                      ||+|++++|
T Consensus       144 ~D~v~~~~~  152 (230)
T 1fbn_A          144 VDVIYEDVA  152 (230)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEecC
Confidence            999997765

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.44  E-value=3e-13  Score=108.02  Aligned_cols=102  Identities=18%  Similarity=0.288  Sum_probs=75.6

Q ss_pred             CcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC
Q psy17460         20 PKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT   98 (216)
Q Consensus        20 ~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~   98 (216)
                      ++..++| |.+...+.+.++..+    ...++.+|||+|||+|.++..++..+ .+|+|+|+|+++++.++.++...  +
T Consensus         4 ~~k~~gQ~fl~d~~~~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~--~   76 (244)
T 1qam_A            4 KNIKHSQNFITSKHNIDKIMTNI----RLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH--D   76 (244)
T ss_dssp             ------CCBCCCHHHHHHHHTTC----CCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC--C
T ss_pred             CCccCCccccCCHHHHHHHHHhC----CCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC--C
Confidence            4556676 556667766666544    33478899999999999999999987 59999999999999999988643  3


Q ss_pred             ceEEEEecccccccccccccCcccEEEEcCCCCC
Q psy17460         99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGT  132 (216)
Q Consensus        99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~  132 (216)
                      +++++.+|+  .+++... ...| .|++|+||..
T Consensus        77 ~v~~~~~D~--~~~~~~~-~~~~-~vv~nlPy~~  106 (244)
T 1qam_A           77 NFQVLNKDI--LQFKFPK-NQSY-KIFGNIPYNI  106 (244)
T ss_dssp             SEEEECCCG--GGCCCCS-SCCC-EEEEECCGGG
T ss_pred             CeEEEEChH--HhCCccc-CCCe-EEEEeCCccc
Confidence            899999999  6665431 1345 7899999974

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.44  E-value=3.4e-13  Score=104.51  Aligned_cols=78  Identities=15%  Similarity=0.258  Sum_probs=66.3

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|.++..++..+..+++|+|+++.+++.++.+...  .++++++.+|+  .+.+...  ++||+|+++
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~--~~~~~~~--~~fD~v~~~  114 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDV--RKLDFPS--ASFDVVLEK  114 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCT--TSCCSCS--SCEEEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcch--hcCCCCC--CcccEEEEC
Confidence            36779999999999999999988766899999999999999998864  23799999999  6655432  689999999


Q ss_pred             CCCC
Q psy17460        128 PPFG  131 (216)
Q Consensus       128 pp~~  131 (216)
                      ++++
T Consensus       115 ~~~~  118 (215)
T 2pxx_A          115 GTLD  118 (215)
T ss_dssp             SHHH
T ss_pred             cchh
Confidence            8764

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.44  E-value=5.9e-13  Score=105.03  Aligned_cols=123  Identities=17%  Similarity=0.169  Sum_probs=86.8

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++.+|+|+|||+|.+++.+++.++ .+|+|+|+++.+++.|+.|+..+++. +++++.+|.  .+.....  ++||+|++
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~--l~~~~~~--~~~D~Ivi   96 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANG--LSAFEEA--DNIDTITI   96 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG--GGGCCGG--GCCCEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hhccccc--cccCEEEE
Confidence            678999999999999999999875 78999999999999999999999987 599999999  8776432  37999874


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKV--VYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      .-.    ....-.+++..+......  .+.+.+....+    ..++||.. .|+.+.+..
T Consensus        97 aGm----Gg~lI~~IL~~~~~~l~~~~~lIlqp~~~~~----~lr~~L~~-~Gf~i~~E~  147 (230)
T 3lec_A           97 CGM----GGRLIADILNNDIDKLQHVKTLVLQPNNRED----DLRKWLAA-NDFEIVAED  147 (230)
T ss_dssp             EEE----CHHHHHHHHHHTGGGGTTCCEEEEEESSCHH----HHHHHHHH-TTEEEEEEE
T ss_pred             eCC----chHHHHHHHHHHHHHhCcCCEEEEECCCChH----HHHHHHHH-CCCEEEEEE
Confidence            211    001112344444444333  44445443333    23666666 666666555

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.44  E-value=4.8e-13  Score=106.39  Aligned_cols=123  Identities=11%  Similarity=0.034  Sum_probs=85.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|.+++.+++.++ .+|+|+|+++.+++.|+.|+..+++. +++++.+|.  .+.....  ++||+|++
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~--l~~~~~~--~~~D~Ivi   96 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNG--LAVIEKK--DAIDTIVI   96 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG--GGGCCGG--GCCCEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecch--hhccCcc--ccccEEEE
Confidence            678999999999999999999875 68999999999999999999999987 599999999  8776432  36999875


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKV--VYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      .-.    ....-.+.+..+...+..  .+.+.+......    .++||.. .|+.+.+..
T Consensus        97 agm----Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~----lr~~L~~-~Gf~i~~E~  147 (244)
T 3gnl_A           97 AGM----GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQ----LREWSEQ-NNWLITSEA  147 (244)
T ss_dssp             EEE----CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHH----HHHHHHH-HTEEEEEEE
T ss_pred             eCC----chHHHHHHHHHHHHHhCCCCEEEEEcCCChHH----HHHHHHH-CCCEEEEEE
Confidence            211    111122345554444433  444444333332    3555555 566555443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.44  E-value=1.6e-12  Score=102.78  Aligned_cols=104  Identities=15%  Similarity=0.236  Sum_probs=79.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|.++..++..  .+++|+|+++.+++.++.+....+. +++++.+|+  .+.+..   ++||+|+++.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~--~~~~~~---~~fD~v~~~~  104 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNR-HVDFWVQDM--RELELP---EPVDAITILC  104 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCG--GGCCCS---SCEEEEEECT
T ss_pred             CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCC-ceEEEEcCh--hhcCCC---CCcCEEEEeC
Confidence            4689999999999999988887  5999999999999999999887664 799999999  666543   6899999975


Q ss_pred             -CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        129 -PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       129 -p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                       ++++...                      ......+++.+.++|+| +|.++++.
T Consensus       105 ~~~~~~~~----------------------~~~~~~~l~~~~~~L~p-gG~l~~~~  137 (243)
T 3d2l_A          105 DSLNYLQT----------------------EADVKQTFDSAARLLTD-GGKLLFDV  137 (243)
T ss_dssp             TGGGGCCS----------------------HHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             CchhhcCC----------------------HHHHHHHHHHHHHhcCC-CeEEEEEc
Confidence             5443310                      11233455566677777 77777644

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.44  E-value=6.4e-12  Score=98.79  Aligned_cols=87  Identities=18%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEI  107 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~  107 (216)
                      +....+.+.++....     .++.+|||+|||+|.++..++..+. +|+|+|+++.+++.++.+.     .+++++.+|+
T Consensus        32 ~~~~~l~~~~~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~  100 (226)
T 3m33_A           32 PDPELTFDLWLSRLL-----TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA-----PHADVYEWNG  100 (226)
T ss_dssp             SCTTHHHHHHHHHHC-----CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC-----TTSEEEECCS
T ss_pred             CCHHHHHHHHHHhcC-----CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC-----CCceEEEcch
Confidence            334445444443332     3678999999999999999999865 9999999999999999882     2799999999


Q ss_pred             cccc-cccccccCcccEEEEcC
Q psy17460        108 NEKS-LDSSVFKQKVDTVIMNP  128 (216)
Q Consensus       108 ~~~~-~~~~~~~~~~D~vi~np  128 (216)
                        .+ ++.. ..++||+|++++
T Consensus       101 --~~~~~~~-~~~~fD~v~~~~  119 (226)
T 3m33_A          101 --KGELPAG-LGAPFGLIVSRR  119 (226)
T ss_dssp             --CSSCCTT-CCCCEEEEEEES
T ss_pred             --hhccCCc-CCCCEEEEEeCC
Confidence              44 2322 027999999984

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.44  E-value=2.7e-12  Score=101.41  Aligned_cols=101  Identities=14%  Similarity=0.156  Sum_probs=80.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|.++..++..+. +|+|+|+++.+++.++.+..   ..+++++.+|+  .+.+...  ++||+|+++.
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~--~~~~~~~--~~fD~v~~~~  124 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE---GPDLSFIKGDL--SSLPFEN--EQFEAIMAIN  124 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC---BTTEEEEECBT--TBCSSCT--TCEEEEEEES
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc---cCCceEEEcch--hcCCCCC--CCccEEEEcC
Confidence            678999999999999999999865 89999999999999998852   12799999999  6665433  7999999988


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      .+++.                         .+...+++.+.++|+| +|.+++..
T Consensus       125 ~l~~~-------------------------~~~~~~l~~~~~~L~p-gG~l~i~~  153 (242)
T 3l8d_A          125 SLEWT-------------------------EEPLRALNEIKRVLKS-DGYACIAI  153 (242)
T ss_dssp             CTTSS-------------------------SCHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             hHhhc-------------------------cCHHHHHHHHHHHhCC-CeEEEEEE
Confidence            77654                         1233556666777777 77777654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.43  E-value=2e-12  Score=99.63  Aligned_cols=103  Identities=16%  Similarity=0.021  Sum_probs=80.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++ +|||+|||+|.++..++..+. +++|+|+++.+++.++.+....+. +++++.+|+  .+.+...  ++||+|+++.
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~--~~~~~~~--~~fD~v~~~~  102 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNL--ADFDIVA--DAWEGIVSIF  102 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBT--TTBSCCT--TTCSEEEEEC
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcCh--hhcCCCc--CCccEEEEEh
Confidence            45 999999999999999988865 999999999999999999988777 899999999  6665432  6899999964


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      .+.                         .......+++.+.++|+| +|.+++...
T Consensus       103 ~~~-------------------------~~~~~~~~l~~~~~~L~p-gG~l~~~~~  132 (202)
T 2kw5_A          103 CHL-------------------------PSSLRQQLYPKVYQGLKP-GGVFILEGF  132 (202)
T ss_dssp             CCC-------------------------CHHHHHHHHHHHHTTCCS-SEEEEEEEE
T ss_pred             hcC-------------------------CHHHHHHHHHHHHHhcCC-CcEEEEEEe
Confidence            321                         111234556666777777 777776543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.43  E-value=5.7e-12  Score=100.59  Aligned_cols=105  Identities=19%  Similarity=0.113  Sum_probs=81.3

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHh-CCCceEEEEecccccccccccccCccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEF-EITNCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      ...++.+|||+|||+|.++..++.. ++ .+|+++|+++.+++.++.++..+ +..+++++.+|+  .+.+...  ++||
T Consensus        93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~--~~~~~~~--~~~D  168 (258)
T 2pwy_A           93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKL--EEAELEE--AAYD  168 (258)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCG--GGCCCCT--TCEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECch--hhcCCCC--CCcC
Confidence            4457889999999999999998887 54 79999999999999999999887 655899999999  6653332  6899


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeC
Q psy17460        123 TVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKT  158 (216)
Q Consensus       123 ~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~  158 (216)
                      +|++++|-    .....+.+.+++++++.++...+.
T Consensus       169 ~v~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~  200 (258)
T 2pwy_A          169 GVALDLME----PWKVLEKAALALKPDRFLVAYLPN  200 (258)
T ss_dssp             EEEEESSC----GGGGHHHHHHHEEEEEEEEEEESC
T ss_pred             EEEECCcC----HHHHHHHHHHhCCCCCEEEEEeCC
Confidence            99999873    223445556666666655554443

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.43  E-value=9.8e-13  Score=103.27  Aligned_cols=80  Identities=16%  Similarity=0.261  Sum_probs=69.1

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-----ceEEEEecccccccccccccCcccE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-----NCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ++.+|||+|||+|.++..++..+. +|+|+|+++.+++.++.++...+..     +++++.+|+  ...+...  ++||+
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~--~~~D~  104 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA--SSLSFHD--SSFDF  104 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT--TSCCSCT--TCEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc--cccCCCC--CceeE
Confidence            678999999999999999998865 9999999999999999998877652     589999999  6665433  78999


Q ss_pred             EEEcCCCCCC
Q psy17460        124 VIMNPPFGTR  133 (216)
Q Consensus       124 vi~npp~~~~  133 (216)
                      |+++..+++.
T Consensus       105 v~~~~~l~~~  114 (235)
T 3sm3_A          105 AVMQAFLTSV  114 (235)
T ss_dssp             EEEESCGGGC
T ss_pred             EEEcchhhcC
Confidence            9999887766

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.43  E-value=3.7e-13  Score=110.61  Aligned_cols=108  Identities=11%  Similarity=-0.000  Sum_probs=85.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHh--HcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSI--LLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~--~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      .++.+|||+|||+|..+..++  .....+|+|+|+++.+++.++.++...++. +++++.+|+  .+.+..   ++||+|
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~---~~fD~v  191 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDA--WKLDTR---EGYDLL  191 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCG--GGCCCC---SCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECch--hcCCcc---CCeEEE
Confidence            468899999999999998875  333369999999999999999999888876 599999999  776654   799999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        125 IMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       125 i~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      +++.++++....                      .....+++.+.+.|+| +|.+++..
T Consensus       192 ~~~~~~~~~~~~----------------------~~~~~~l~~~~~~Lkp-gG~l~i~~  227 (305)
T 3ocj_A          192 TSNGLNIYEPDD----------------------ARVTELYRRFWQALKP-GGALVTSF  227 (305)
T ss_dssp             ECCSSGGGCCCH----------------------HHHHHHHHHHHHHEEE-EEEEEEEC
T ss_pred             EECChhhhcCCH----------------------HHHHHHHHHHHHhcCC-CeEEEEEe
Confidence            999887754100                      0112356777888899 88888744

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.43  E-value=1.3e-12  Score=103.15  Aligned_cols=109  Identities=17%  Similarity=0.237  Sum_probs=80.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCC-hHHHHHH---HHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECD-KEILDIF---IDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~-~~~~~~~---~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ++.+|||+|||+|.++..+++..+ ..|+|+|+| +.+++.|   ++++...+++++.++.+|+  .+++... .+.+|.
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~--~~l~~~~-~d~v~~  100 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAA--ESLPFEL-KNIADS  100 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBT--TBCCGGG-TTCEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCH--HHhhhhc-cCeEEE
Confidence            678999999999999999886544 689999999 6666665   8888888887899999999  6665321 167888


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460        124 VIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA  181 (216)
Q Consensus       124 vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~  181 (216)
                      |++++|+...         ......           ....+++.+.++|+| +|.+++
T Consensus       101 i~~~~~~~~~---------~~~~~~-----------~~~~~l~~~~r~Lkp-GG~l~i  137 (225)
T 3p2e_A          101 ISILFPWGTL---------LEYVIK-----------PNRDILSNVADLAKK-EAHFEF  137 (225)
T ss_dssp             EEEESCCHHH---------HHHHHT-----------TCHHHHHHHHTTEEE-EEEEEE
T ss_pred             EEEeCCCcHH---------hhhhhc-----------chHHHHHHHHHhcCC-CcEEEE
Confidence            9999886521         000000           113466778888899 888877

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.43  E-value=3.3e-12  Score=101.36  Aligned_cols=103  Identities=19%  Similarity=0.104  Sum_probs=79.5

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccccccccccCcccEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ...++.+|||+|||+|.++..+++. ..+++++|+++++++.++++....++ .+++++.+|+  .+.....  +.||+|
T Consensus        88 ~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~--~~~D~v  162 (248)
T 2yvl_A           88 NLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDF--KDAEVPE--GIFHAA  162 (248)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCT--TTSCCCT--TCBSEE
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcCh--hhcccCC--CcccEE
Confidence            3457889999999999999998888 56999999999999999999988887 3799999999  6654121  689999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHhhcCCceEEEee
Q psy17460        125 IMNPPFGTRNCGIDLAFVQYAADISKVVYSLHK  157 (216)
Q Consensus       125 i~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~  157 (216)
                      ++++|-    .....+.+.+.+++++.++...+
T Consensus       163 ~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          163 FVDVRE----PWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             EECSSC----GGGGHHHHHHHBCTTCEEEEEES
T ss_pred             EECCcC----HHHHHHHHHHHcCCCCEEEEEeC
Confidence            999872    22334445556666665555444

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.43  E-value=3.6e-13  Score=110.18  Aligned_cols=113  Identities=17%  Similarity=0.164  Sum_probs=77.9

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCC-----------------------------
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEI-----------------------------   97 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~-----------------------------   97 (216)
                      .++++|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++...+.                             
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            36889999999999999998887 347999999999999999998765431                             


Q ss_pred             -----------------------------CceEEEEeccccccccc---ccccCcccEEEEcCCCCCCCCCCCHHHHHHH
Q psy17460         98 -----------------------------TNCDAILFEINEKSLDS---SVFKQKVDTVIMNPPFGTRNCGIDLAFVQYA  145 (216)
Q Consensus        98 -----------------------------~~v~~~~~d~~~~~~~~---~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~  145 (216)
                                                   .+++++.+|+  .....   ....++||+|+|.....+.         ...
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~--~~~~~~~~~~~~~~fD~I~~~~vl~~i---------hl~  193 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNY--VLDRDDLVEAQTPEYDVVLCLSLTKWV---------HLN  193 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCC--CCSSHHHHTTCCCCEEEEEEESCHHHH---------HHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEeccc--ccCccccccccCCCcCEEEEChHHHHh---------hhc
Confidence                                         2799999999  65431   1122799999997754211         000


Q ss_pred             hhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        146 ADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       146 l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                                ........+++.+.++|+| +|.++++
T Consensus       194 ----------~~~~~~~~~l~~~~~~Lkp-GG~lil~  219 (292)
T 3g07_A          194 ----------WGDEGLKRMFRRIYRHLRP-GGILVLE  219 (292)
T ss_dssp             ----------HHHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred             ----------CCHHHHHHHHHHHHHHhCC-CcEEEEe
Confidence                      0011234566667777777 7777774

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.43  E-value=6.4e-13  Score=114.82  Aligned_cols=83  Identities=17%  Similarity=0.169  Sum_probs=70.8

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ..++.+|||+|||+|..+..++.. + ...|+++|+++.+++.++.|+..+++.++.++.+|+  .++... ..++||+|
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da--~~l~~~-~~~~FD~I  179 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAP--AELVPH-FSGFFDRI  179 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCH--HHHHHH-HTTCEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH--HHhhhh-ccccCCEE
Confidence            357899999999999999988875 3 369999999999999999999999998899999999  665421 12689999


Q ss_pred             EEcCCCCC
Q psy17460        125 IMNPPFGT  132 (216)
Q Consensus       125 i~npp~~~  132 (216)
                      ++|||+..
T Consensus       180 l~DaPCSg  187 (456)
T 3m4x_A          180 VVDAPCSG  187 (456)
T ss_dssp             EEECCCCC
T ss_pred             EECCCCCC
Confidence            99999754

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.42  E-value=8.7e-13  Score=105.34  Aligned_cols=83  Identities=19%  Similarity=0.141  Sum_probs=67.4

Q ss_pred             HHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccC
Q psy17460         41 IQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQ  119 (216)
Q Consensus        41 ~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  119 (216)
                      +...+...++.+|||+|||+|.++..++... ..+++|+|+++.+++.++.+.     ++++++.+|+  .+++ .  .+
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~--~~~~-~--~~   94 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----PNTNFGKADL--ATWK-P--AQ   94 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----TTSEEEECCT--TTCC-C--SS
T ss_pred             HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----CCcEEEECCh--hhcC-c--cC
Confidence            3333344577899999999999999988873 258999999999999999872     2789999999  6665 2  27


Q ss_pred             cccEEEEcCCCCCC
Q psy17460        120 KVDTVIMNPPFGTR  133 (216)
Q Consensus       120 ~~D~vi~npp~~~~  133 (216)
                      +||+|+++..+++.
T Consensus        95 ~fD~v~~~~~l~~~  108 (259)
T 2p35_A           95 KADLLYANAVFQWV  108 (259)
T ss_dssp             CEEEEEEESCGGGS
T ss_pred             CcCEEEEeCchhhC
Confidence            89999999988876

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.42  E-value=4e-12  Score=99.71  Aligned_cols=119  Identities=18%  Similarity=0.175  Sum_probs=89.5

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCC-----CceEE
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEI-----TNCDA  102 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~-----~~v~~  102 (216)
                      .......++..+...  ..++.+|||+|||+|..+..+++. ++ .+|+++|+++.+++.++.++...+.     +++++
T Consensus        60 ~p~~~~~~l~~l~~~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~  137 (226)
T 1i1n_A           60 APHMHAYALELLFDQ--LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL  137 (226)
T ss_dssp             CHHHHHHHHHHTTTT--SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred             CHHHHHHHHHHHHhh--CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEE
Confidence            344555555555421  246789999999999999988876 44 5999999999999999999887653     47999


Q ss_pred             EEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        103 ILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       103 ~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      +.+|+  .......  ++||+|+++.++...                               ++.+.++|+| +|.+++.
T Consensus       138 ~~~d~--~~~~~~~--~~fD~i~~~~~~~~~-------------------------------~~~~~~~Lkp-gG~lv~~  181 (226)
T 1i1n_A          138 VVGDG--RMGYAEE--APYDAIHVGAAAPVV-------------------------------PQALIDQLKP-GGRLILP  181 (226)
T ss_dssp             EESCG--GGCCGGG--CCEEEEEECSBBSSC-------------------------------CHHHHHTEEE-EEEEEEE
T ss_pred             EECCc--ccCcccC--CCcCEEEECCchHHH-------------------------------HHHHHHhcCC-CcEEEEE
Confidence            99999  6544322  689999999886432                               2345778899 9999887


Q ss_pred             eecC
Q psy17460        183 MKYD  186 (216)
Q Consensus       183 ~~~~  186 (216)
                      ....
T Consensus       182 ~~~~  185 (226)
T 1i1n_A          182 VGPA  185 (226)
T ss_dssp             ESCT
T ss_pred             EecC
Confidence            6643

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=99.42  E-value=9.7e-13  Score=115.99  Aligned_cols=109  Identities=18%  Similarity=0.194  Sum_probs=87.8

Q ss_pred             CCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc----C----------CCEEEEEeCChHH
Q psy17460         19 NPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL----G----------ADFCFALECDKEI   84 (216)
Q Consensus        19 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~----~----------~~~v~~iD~~~~~   84 (216)
                      +.+...|+|.||.++...|+..+..    .++.+|+|++||||.+.+.+..+    .          ...++|+|+++.+
T Consensus       191 ~~~g~~GqfyTP~~Vv~lmv~l~~p----~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~  266 (530)
T 3ufb_A          191 DAAGDSGEFYTPRPVVRFMVEVMDP----QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLP  266 (530)
T ss_dssp             TSSSSCCCCCCCHHHHHHHHHHHCC----CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHH
T ss_pred             HhcCcCceECCcHHHHHHHHHhhcc----CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHH
Confidence            3444689999999999999988764    37789999999999998776543    1          1369999999999


Q ss_pred             HHHHHHhhhHhCCCceEEEEeccccccccccc--ccCcccEEEEcCCCCCC
Q psy17460         85 LDIFIDNKNEFEITNCDAILFEINEKSLDSSV--FKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        85 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~~D~vi~npp~~~~  133 (216)
                      ...|+.|+-..+....++..+|.  ...+...  ...+||+|++||||+..
T Consensus       267 ~~la~mNl~lhg~~~~~I~~~dt--L~~~~~~~~~~~~fD~Il~NPPf~~~  315 (530)
T 3ufb_A          267 YLLVQMNLLLHGLEYPRIDPENS--LRFPLREMGDKDRVDVILTNPPFGGE  315 (530)
T ss_dssp             HHHHHHHHHHHTCSCCEEECSCT--TCSCGGGCCGGGCBSEEEECCCSSCB
T ss_pred             HHHHHHHHHhcCCcccccccccc--ccCchhhhcccccceEEEecCCCCcc
Confidence            99999999888886678899999  7654321  22579999999999753

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.42  E-value=2.2e-12  Score=100.16  Aligned_cols=76  Identities=17%  Similarity=0.097  Sum_probs=63.8

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.    .+..+++++.+|+  .+....   ++||+|+++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~--~~~~~~---~~~D~v~~~  114 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGLDNVEFRQQDL--FDWTPD---RQWDAVFFA  114 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCCTTEEEEECCT--TSCCCS---SCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCCCCeEEEeccc--ccCCCC---CceeEEEEe
Confidence            4567999999999999999998865 99999999999999988    3444899999999  665222   799999998


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      ..+++.
T Consensus       115 ~~l~~~  120 (218)
T 3ou2_A          115 HWLAHV  120 (218)
T ss_dssp             SCGGGS
T ss_pred             chhhcC
Confidence            877655

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.42  E-value=2.6e-12  Score=100.34  Aligned_cols=80  Identities=20%  Similarity=0.184  Sum_probs=60.4

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc-ccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS-SVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~~D~  123 (216)
                      ...++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.+....+..  +++.++.+|+  .+... ....++||+
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~--~~~~~~~~~~~~fD~  129 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDA--SKPWKYSGIVEKVDL  129 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCT--TCGGGTTTTCCCEEE
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCC--CCchhhcccccceeE
Confidence            34578899999999999998888764 369999999999887776665543  2789999999  55310 001168999


Q ss_pred             EEEcCC
Q psy17460        124 VIMNPP  129 (216)
Q Consensus       124 vi~npp  129 (216)
                      |+++.+
T Consensus       130 V~~~~~  135 (210)
T 1nt2_A          130 IYQDIA  135 (210)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            999854

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.42  E-value=6e-13  Score=108.95  Aligned_cols=106  Identities=19%  Similarity=0.277  Sum_probs=80.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC---CceEEEEecccccccccccccCcccEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI---TNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ++.+|||+|||+|.++..++..+. +|+|+|+++.+++.++.++...+.   .+++++.+|+  .+++..   ++||+|+
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~--~~~~~~---~~fD~v~  155 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM--SAFALD---KRFGTVV  155 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBT--TBCCCS---CCEEEEE
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCch--hcCCcC---CCcCEEE
Confidence            344899999999999999998865 899999999999999999887663   3799999999  776653   7999999


Q ss_pred             Ec-CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        126 MN-PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       126 ~n-pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      |. ..+++.                       .......+++.+.++|+| +|.+++...
T Consensus       156 ~~~~~~~~~-----------------------~~~~~~~~l~~~~~~L~p-gG~l~~~~~  191 (299)
T 3g2m_A          156 ISSGSINEL-----------------------DEADRRGLYASVREHLEP-GGKFLLSLA  191 (299)
T ss_dssp             ECHHHHTTS-----------------------CHHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred             ECCcccccC-----------------------CHHHHHHHHHHHHHHcCC-CcEEEEEee
Confidence            74 222221                       111235666777778888 888877554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.42  E-value=3.1e-12  Score=102.30  Aligned_cols=118  Identities=11%  Similarity=0.068  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINE  109 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~  109 (216)
                      ....++..+...   .++++|||+|||+|..++.++...  ..+|+++|+++.+++.|++++...++. +++++.+|+  
T Consensus        66 ~~~~ll~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda--  140 (247)
T 1sui_A           66 DEGQFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA--  140 (247)
T ss_dssp             HHHHHHHHHHHH---TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH--
T ss_pred             HHHHHHHHHHHh---hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH--
Confidence            333444444433   367899999999999999988862  269999999999999999999988875 799999999  


Q ss_pred             ccccccc-----ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        110 KSLDSSV-----FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       110 ~~~~~~~-----~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      .+.....     ..++||+|+++.+..                            ....+++.+.++|+| +|.++++..
T Consensus       141 ~~~l~~l~~~~~~~~~fD~V~~d~~~~----------------------------~~~~~l~~~~~~Lkp-GG~lv~d~~  191 (247)
T 1sui_A          141 LPVLDEMIKDEKNHGSYDFIFVDADKD----------------------------NYLNYHKRLIDLVKV-GGVIGYDNT  191 (247)
T ss_dssp             HHHHHHHHHSGGGTTCBSEEEECSCST----------------------------THHHHHHHHHHHBCT-TCCEEEECT
T ss_pred             HHHHHHHHhccCCCCCEEEEEEcCchH----------------------------HHHHHHHHHHHhCCC-CeEEEEecC
Confidence            6643211     026899999987521                            123456667788889 888887543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.42  E-value=2.3e-12  Score=112.28  Aligned_cols=81  Identities=15%  Similarity=0.222  Sum_probs=69.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|..+..++.. + ...|+++|+++.+++.++.|+..+++.+++++.+|+  .+++.. ..++||.|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~--~~~~~~-~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDG--RVFGAA-VPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCS--TTHHHH-STTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCH--HHhhhh-ccccCCEEEE
Confidence            7889999999999999998876 2 379999999999999999999999988899999999  665421 1168999999


Q ss_pred             cCCCCC
Q psy17460        127 NPPFGT  132 (216)
Q Consensus       127 npp~~~  132 (216)
                      |||+..
T Consensus       194 D~PcSg  199 (479)
T 2frx_A          194 DAPCSG  199 (479)
T ss_dssp             ECCCCC
T ss_pred             CCCcCC
Confidence            999853

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.41  E-value=4.5e-13  Score=106.85  Aligned_cols=79  Identities=14%  Similarity=0.076  Sum_probs=67.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccc----cCcc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVF----KQKV  121 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~----~~~~  121 (216)
                      ++++|||+|||+|..++.++...  ..+|+++|+++++++.|+.++...++. +++++.+|+  .+......    .++|
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda--~~~l~~~~~~~~~~~f  137 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA--LDTLHSLLNEGGEHQF  137 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH--HHHHHHHHHHHCSSCE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH--HHHHHHHhhccCCCCE
Confidence            67899999999999999988853  369999999999999999999998886 799999999  66543210    2689


Q ss_pred             cEEEEcCC
Q psy17460        122 DTVIMNPP  129 (216)
Q Consensus       122 D~vi~npp  129 (216)
                      |+|+++.+
T Consensus       138 D~V~~d~~  145 (242)
T 3r3h_A          138 DFIFIDAD  145 (242)
T ss_dssp             EEEEEESC
T ss_pred             eEEEEcCC
Confidence            99999876

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.41  E-value=2.9e-12  Score=100.64  Aligned_cols=80  Identities=18%  Similarity=0.117  Sum_probs=66.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccccc----Cc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFK----QK  120 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~----~~  120 (216)
                      .++.+|||+|||+|..+..++...  ..+|+++|+++.+++.+++++...++. +++++.+|+  .+.......    ++
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~--~~~~~~~~~~~~~~~  145 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA--LETLDELLAAGEAGT  145 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH--HHHHHHHHHTTCTTC
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH--HHHHHHHHhcCCCCC
Confidence            367899999999999999988862  369999999999999999999988874 799999999  654322111    58


Q ss_pred             ccEEEEcCC
Q psy17460        121 VDTVIMNPP  129 (216)
Q Consensus       121 ~D~vi~npp  129 (216)
                      ||+|+++++
T Consensus       146 ~D~v~~d~~  154 (229)
T 2avd_A          146 FDVAVVDAD  154 (229)
T ss_dssp             EEEEEECSC
T ss_pred             ccEEEECCC
Confidence            999999987

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.41  E-value=2.5e-12  Score=105.94  Aligned_cols=83  Identities=14%  Similarity=-0.006  Sum_probs=66.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh-------CCCceEEEEecccccccc----cccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF-------EITNCDAILFEINEKSLD----SSVF  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-------~~~~v~~~~~d~~~~~~~----~~~~  117 (216)
                      ++.+|||+|||+|..+..++..+..+++|+|+++.+++.++.+....       ...+++++.+|+  .+.+    ....
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~  111 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS--SKELLIDKFRDP  111 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT--TTSCSTTTCSST
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc--cccchhhhcccC
Confidence            67799999999999999888765579999999999999999988654       233799999999  5554    2212


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      .++||+|+++..+++.
T Consensus       112 ~~~fD~V~~~~~l~~~  127 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYS  127 (313)
T ss_dssp             TCCEEEEEEETCGGGG
T ss_pred             CCCEEEEEEecchhhc
Confidence            2589999999887654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=2.4e-12  Score=104.35  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=74.0

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.++.+.     ++++++.+|+  .+++..   ++||+|+++
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~--~~~~~~---~~fD~v~~~  124 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNY-----PHLHFDVADA--RNFRVD---KPLDAVFSN  124 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-----TTSCEEECCT--TTCCCS---SCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhC-----CCCEEEECCh--hhCCcC---CCcCEEEEc
Confidence            477899999999999999988854 59999999999999998876     2789999999  666653   799999999


Q ss_pred             CCCCCC-CCCCCHHHHHHHhhcCCceEE
Q psy17460        128 PPFGTR-NCGIDLAFVQYAADISKVVYS  154 (216)
Q Consensus       128 pp~~~~-~~~~~~~~~~~~l~~~~~ly~  154 (216)
                      ..+++. +.....+.+.+++++++.++.
T Consensus       125 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~  152 (279)
T 3ccf_A          125 AMLHWVKEPEAAIASIHQALKSGGRFVA  152 (279)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhhhCcCHHHHHHHHHHhcCCCcEEEE
Confidence            888765 322233344455555555333

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.41  E-value=4.4e-12  Score=108.82  Aligned_cols=122  Identities=17%  Similarity=0.218  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHH-------HHhhhHhC--CCce
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIF-------IDNKNEFE--ITNC  100 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~-------~~~~~~~~--~~~v  100 (216)
                      ..+...++..+    ...++.+|||+|||+|.++..++.. +..+|+|+|+++.+++.|       +.++...+  ..++
T Consensus       228 p~~v~~ml~~l----~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV  303 (433)
T 1u2z_A          228 PNFLSDVYQQC----QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV  303 (433)
T ss_dssp             HHHHHHHHHHT----TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred             HHHHHHHHHhc----CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCce
Confidence            34444444433    3457889999999999999998885 556899999999999999       88888888  4589


Q ss_pred             EEEEeccccccc--ccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCcccee
Q psy17460        101 DAILFEINEKSL--DSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVD  178 (216)
Q Consensus       101 ~~~~~d~~~~~~--~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~  178 (216)
                      +++.+|.  ...  ++....++||+|++|......                          .....++...++|+| +|.
T Consensus       304 ~~i~gD~--~~~~~~~~~~~~~FDvIvvn~~l~~~--------------------------d~~~~L~el~r~LKp-GG~  354 (433)
T 1u2z_A          304 EFSLKKS--FVDNNRVAELIPQCDVILVNNFLFDE--------------------------DLNKKVEKILQTAKV-GCK  354 (433)
T ss_dssp             EEEESSC--STTCHHHHHHGGGCSEEEECCTTCCH--------------------------HHHHHHHHHHTTCCT-TCE
T ss_pred             EEEEcCc--cccccccccccCCCCEEEEeCccccc--------------------------cHHHHHHHHHHhCCC-CeE
Confidence            9999876  432  111112689999998543211                          123344566778899 888


Q ss_pred             eeeeeec
Q psy17460        179 VIAEMKY  185 (216)
Q Consensus       179 ~~~~~~~  185 (216)
                      +++...+
T Consensus       355 lVi~d~f  361 (433)
T 1u2z_A          355 IISLKSL  361 (433)
T ss_dssp             EEESSCS
T ss_pred             EEEeecc
Confidence            8875443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.41  E-value=3.7e-12  Score=102.67  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=70.3

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChH------HHHHHHHhhhHhCCC-ceEEEEec-ccccccccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKE------ILDIFIDNKNEFEIT-NCDAILFE-INEKSLDSS  115 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~------~~~~~~~~~~~~~~~-~v~~~~~d-~~~~~~~~~  115 (216)
                      ...++.+|||+|||+|.++..++.. ++ .+|+|+|+|+.      +++.+++++...++. +++++.+| ......+..
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  119 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA  119 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence            4457889999999999999998887 45 79999999997      999999999887764 79999998 411344333


Q ss_pred             cccCcccEEEEcCCCCCC
Q psy17460        116 VFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       116 ~~~~~~D~vi~npp~~~~  133 (216)
                      .  ++||+|+++.++++.
T Consensus       120 ~--~~fD~v~~~~~l~~~  135 (275)
T 3bkx_A          120 D--QHFDRVVLAHSLWYF  135 (275)
T ss_dssp             T--CCCSEEEEESCGGGS
T ss_pred             C--CCEEEEEEccchhhC
Confidence            2  789999999998776

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.41  E-value=8.2e-13  Score=114.32  Aligned_cols=82  Identities=20%  Similarity=0.246  Sum_probs=69.9

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ..++.+|||+|||+|..+..++.. + .+.|+++|+++.+++.++.|+..+++. +.++.+|+  .++... ..++||+|
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da--~~l~~~-~~~~FD~I  174 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPP--RALAEA-FGTYFHRV  174 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCH--HHHHHH-HCSCEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCH--HHhhhh-ccccCCEE
Confidence            357899999999999999998876 2 269999999999999999999999996 99999999  665421 12689999


Q ss_pred             EEcCCCCC
Q psy17460        125 IMNPPFGT  132 (216)
Q Consensus       125 i~npp~~~  132 (216)
                      ++|||+..
T Consensus       175 l~D~PcSg  182 (464)
T 3m6w_A          175 LLDAPCSG  182 (464)
T ss_dssp             EEECCCCC
T ss_pred             EECCCcCC
Confidence            99999954

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.41  E-value=3.5e-12  Score=103.28  Aligned_cols=105  Identities=18%  Similarity=0.136  Sum_probs=80.5

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHh-C--CCceEEEEecccccccccccccCc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEF-E--ITNCDAILFEINEKSLDSSVFKQK  120 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~-~--~~~v~~~~~d~~~~~~~~~~~~~~  120 (216)
                      ...++.+|||+|||+|.++..++.. ++ .+|+++|+++.+++.++.++... +  ..+++++.+|+  .+.+...  ++
T Consensus        96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~--~~~~~~~--~~  171 (280)
T 1i9g_A           96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL--ADSELPD--GS  171 (280)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG--GGCCCCT--TC
T ss_pred             CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch--HhcCCCC--Cc
Confidence            4457889999999999999998875 43 79999999999999999999877 5  44899999999  6654432  68


Q ss_pred             ccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeC
Q psy17460        121 VDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKT  158 (216)
Q Consensus       121 ~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~  158 (216)
                      ||+|++++|-    .....+.+.+++++++.++...+.
T Consensus       172 ~D~v~~~~~~----~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          172 VDRAVLDMLA----PWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             EEEEEEESSC----GGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             eeEEEECCcC----HHHHHHHHHHhCCCCCEEEEEeCC
Confidence            9999998873    223344556666666665554443

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.41  E-value=3.1e-12  Score=97.39  Aligned_cols=72  Identities=17%  Similarity=0.201  Sum_probs=61.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.+..     +++++.+|+  .+.+...  ++||+|++++
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~--~~~~~~~--~~~D~i~~~~  115 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP-----EARWVVGDL--SVDQISE--TDFDLIVSAG  115 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT-----TSEEEECCT--TTSCCCC--CCEEEEEECC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC-----CCcEEEccc--ccCCCCC--CceeEEEECC
Confidence            678999999999999999988865 99999999999999998864     689999999  6655432  6899999995


Q ss_pred             CC
Q psy17460        129 PF  130 (216)
Q Consensus       129 p~  130 (216)
                      +.
T Consensus       116 ~~  117 (195)
T 3cgg_A          116 NV  117 (195)
T ss_dssp             CC
T ss_pred             cH
Confidence            54

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.40  E-value=5.7e-13  Score=114.72  Aligned_cols=84  Identities=17%  Similarity=0.213  Sum_probs=71.2

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ..++.+|||+|||+|..+..++...+ .+|+++|+++.+++.++.++..+++ +++++.+|+  .+.+.....++||.|+
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~--~~~~~~~~~~~fD~Vl  320 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDG--RYPSQWCGEQQFDRIL  320 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCT--TCTHHHHTTCCEEEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCch--hhchhhcccCCCCEEE
Confidence            35788999999999999999988764 7999999999999999999999888 689999999  6654211226899999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      +|||+...
T Consensus       321 ~D~Pcsg~  328 (429)
T 1sqg_A          321 LDAPCSAT  328 (429)
T ss_dssp             EECCCCCG
T ss_pred             EeCCCCcc
Confidence            99998753

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.40  E-value=2.1e-12  Score=101.56  Aligned_cols=122  Identities=16%  Similarity=0.093  Sum_probs=91.3

Q ss_pred             cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC------CEEEEEeCChHHHHHHHHhhhHhC--
Q psy17460         26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA------DFCFALECDKEILDIFIDNKNEFE--   96 (216)
Q Consensus        26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~------~~v~~iD~~~~~~~~~~~~~~~~~--   96 (216)
                      +..+...+...++..+...  ..++.+|||+|||+|.++..++.. +.      .+|+++|+++.+++.+++++...+  
T Consensus        63 ~~~~~p~~~~~~~~~l~~~--~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  140 (227)
T 1r18_A           63 VTISAPHMHAFALEYLRDH--LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS  140 (227)
T ss_dssp             EEECCHHHHHHHHHHTTTT--CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             CccCChHHHHHHHHHHHhh--CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcc
Confidence            3344556666666665421  246789999999999999888874 32      489999999999999999987765  


Q ss_pred             ---CCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcC
Q psy17460         97 ---ITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKN  173 (216)
Q Consensus        97 ---~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~  173 (216)
                         ..+++++.+|+  .+....  .++||+|+++.+++..                               .+.+.+.|+
T Consensus       141 ~~~~~~v~~~~~d~--~~~~~~--~~~fD~I~~~~~~~~~-------------------------------~~~~~~~Lk  185 (227)
T 1r18_A          141 MLDSGQLLIVEGDG--RKGYPP--NAPYNAIHVGAAAPDT-------------------------------PTELINQLA  185 (227)
T ss_dssp             HHHHTSEEEEESCG--GGCCGG--GCSEEEEEECSCBSSC-------------------------------CHHHHHTEE
T ss_pred             ccCCCceEEEECCc--ccCCCc--CCCccEEEECCchHHH-------------------------------HHHHHHHhc
Confidence               44899999999  552222  1689999999876533                               134677889


Q ss_pred             ccceeeeeeeec
Q psy17460        174 VEQVDVIAEMKY  185 (216)
Q Consensus       174 ~~~g~~~~~~~~  185 (216)
                      | +|.+++..+-
T Consensus       186 p-gG~lvi~~~~  196 (227)
T 1r18_A          186 S-GGRLIVPVGP  196 (227)
T ss_dssp             E-EEEEEEEESC
T ss_pred             C-CCEEEEEEec
Confidence            9 9999997764

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.40  E-value=2.8e-12  Score=102.24  Aligned_cols=79  Identities=18%  Similarity=0.217  Sum_probs=65.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHh--------CCCceEEEEecccccc-ccccccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEF--------EITNCDAILFEINEKS-LDSSVFK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~--------~~~~v~~~~~d~~~~~-~~~~~~~  118 (216)
                      ++.+|||+|||+|.++..++..++ .+|+|+|+++.+++.++.++..+        ++.+++++.+|+  .+ ++.....
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~--~~~l~~~~~~  126 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNA--MKFLPNFFEK  126 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCT--TSCGGGTSCT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccH--HHHHHHhccc
Confidence            567999999999999999999876 58999999999999999998876        666899999999  65 3311122


Q ss_pred             CcccEEEEcCC
Q psy17460        119 QKVDTVIMNPP  129 (216)
Q Consensus       119 ~~~D~vi~npp  129 (216)
                      +++|.|+++.|
T Consensus       127 ~~~d~v~~~~p  137 (246)
T 2vdv_E          127 GQLSKMFFCFP  137 (246)
T ss_dssp             TCEEEEEEESC
T ss_pred             cccCEEEEECC
Confidence            68999987643

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.40  E-value=3.5e-13  Score=114.73  Aligned_cols=81  Identities=17%  Similarity=0.143  Sum_probs=69.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh--CCCceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF--EITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      +|.+|||+|||+|..++.++..+. +|+++|+|+.+++.++.|+..+  ++.+++++.+|+  .+.......++||+|++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da--~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDF--KEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCG--GGSHHHHHHHCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcH--HHhhhhccCCCceEEEE
Confidence            488999999999999999888864 9999999999999999999988  777899999999  76532211258999999


Q ss_pred             cCCCCC
Q psy17460        127 NPPFGT  132 (216)
Q Consensus       127 npp~~~  132 (216)
                      ||||..
T Consensus       170 DPPrr~  175 (410)
T 3ll7_A          170 DPARRS  175 (410)
T ss_dssp             CCEEC-
T ss_pred             CCCCcC
Confidence            999976

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.40  E-value=2.7e-12  Score=99.62  Aligned_cols=100  Identities=19%  Similarity=0.131  Sum_probs=79.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.+.      +++++.+|+  ...+..   ++||+|+++.
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~d~--~~~~~~---~~fD~v~~~~  110 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL------GRPVRTMLF--HQLDAI---DAYDAVWAHA  110 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------TSCCEECCG--GGCCCC---SCEEEEEECS
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc------CCceEEeee--ccCCCC---CcEEEEEecC
Confidence            578999999999999999998865 9999999999999999887      467889999  666632   7999999988


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      .+++..                       ......+++.+.++|+| +|.+++...
T Consensus       111 ~l~~~~-----------------------~~~~~~~l~~~~~~Lkp-gG~l~~~~~  142 (211)
T 3e23_A          111 CLLHVP-----------------------RDELADVLKLIWRALKP-GGLFYASYK  142 (211)
T ss_dssp             CGGGSC-----------------------HHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred             chhhcC-----------------------HHHHHHHHHHHHHhcCC-CcEEEEEEc
Confidence            776541                       11234566667777788 787777544

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.40  E-value=2.3e-12  Score=109.08  Aligned_cols=99  Identities=14%  Similarity=0.047  Sum_probs=78.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHh---------------CCCceEEEEeccccccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEF---------------EITNCDAILFEINEKSL  112 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~---------------~~~~v~~~~~d~~~~~~  112 (216)
                      ++.+|||+|||+|.+++.++.. +..+|+++|+++++++.+++|+..+               ++.+++++.+|+  .++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da--~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA--NRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH--HHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcH--HHH
Confidence            6889999999999999998887 5568999999999999999999998               776699999999  665


Q ss_pred             ccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc---eEEEe
Q psy17460        113 DSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV---VYSLH  156 (216)
Q Consensus       113 ~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~---ly~~~  156 (216)
                      .... .++||+|++|||+.      ...+++.++...+.   +|..+
T Consensus       125 ~~~~-~~~fD~I~lDP~~~------~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          125 MAER-HRYFHFIDLDPFGS------PMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHS-TTCEEEEEECCSSC------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhc-cCCCCEEEeCCCCC------HHHHHHHHHHhcCCCCEEEEEe
Confidence            4321 25899999998653      23566766555443   55544

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.39  E-value=9.9e-12  Score=96.32  Aligned_cols=73  Identities=14%  Similarity=0.116  Sum_probs=61.7

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|.++..+   +..+++|+|+++.+++.++++.     .+++++.+|+  .+.+...  ++||+|+++.
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~--~~~~~~~--~~fD~v~~~~  103 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWG--EALPFPG--ESFDVVLLFT  103 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCT--TSCCSCS--SCEEEEEEES
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEccc--ccCCCCC--CcEEEEEEcC
Confidence            7789999999999998776   4348999999999999999887     2789999999  6665433  6899999998


Q ss_pred             CCCCC
Q psy17460        129 PFGTR  133 (216)
Q Consensus       129 p~~~~  133 (216)
                      .+++.
T Consensus       104 ~l~~~  108 (211)
T 2gs9_A          104 TLEFV  108 (211)
T ss_dssp             CTTTC
T ss_pred             hhhhc
Confidence            87765

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.39  E-value=4.4e-12  Score=101.91  Aligned_cols=147  Identities=11%  Similarity=0.036  Sum_probs=93.3

Q ss_pred             CCC--CEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH-------hC-C-CceEEEEeccccccccccc
Q psy17460         48 IDG--KTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNE-------FE-I-TNCDAILFEINEKSLDSSV  116 (216)
Q Consensus        48 ~~~--~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~-------~~-~-~~v~~~~~d~~~~~~~~~~  116 (216)
                      .++  .+|||+|||+|..++.++..|. +|+++|+++.++..++.++..       ++ + .+++++.+|+  .++....
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~--~~~L~~~  161 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS--LTALTDI  161 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH--HHHSTTC
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH--HHHHHhC
Confidence            356  8999999999999999999876 799999999887777666543       22 3 3799999999  6653321


Q ss_pred             ccCcccEEEEcCCCCCCCCCCC-HHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCcc--ccc
Q psy17460        117 FKQKVDTVIMNPPFGTRNCGID-LAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQS--YKF  193 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~~~~~~-~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~--~~~  193 (216)
                      . +.||+|++||||........ .+.+ +.++...     -...+...+++.+.+..+.   +++++.+......  +.+
T Consensus       162 ~-~~fDvV~lDP~y~~~~~saavkk~~-~~lr~l~-----~~~~~~~~ll~~a~~~a~~---rvvVK~p~~~~~l~~~~p  231 (258)
T 2oyr_A          162 T-PRPQVVYLDPMFPHKQKSALVKKEM-RVFQSLV-----GPDLDADGLLEPARLLATK---RVVVKRPDYAPPLANVAT  231 (258)
T ss_dssp             S-SCCSEEEECCCCCCCCC-----HHH-HHHHHHS-----CCCTTGGGGHHHHHHHCSS---EEEEEEETTCCCGGGCCC
T ss_pred             c-ccCCEEEEcCCCCCcccchHHHHHH-HHHHHhh-----cCCccHHHHHHHHHHhcCC---eEEEEeCCCChhhhcCCC
Confidence            1 47999999999976532211 1122 2222211     1133466777788887544   4555555443221  222


Q ss_pred             -cccccceEEEEEEE
Q psy17460        194 -HKKSLHDIEVDLLR  207 (216)
Q Consensus       194 -~~~~~~~~~~~~~r  207 (216)
                       +.-..+.++.+++-
T Consensus       232 ~~~~~~k~~rfd~y~  246 (258)
T 2oyr_A          232 PNAVVTKGHRFDIYA  246 (258)
T ss_dssp             SEEEECSSEEEEEEE
T ss_pred             ceeecCceEEEEEEe
Confidence             33444567777763

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.39  E-value=2.5e-12  Score=102.12  Aligned_cols=80  Identities=19%  Similarity=0.193  Sum_probs=63.9

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhH------hCCCceEEEEecccccc-cccccccCc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNE------FEITNCDAILFEINEKS-LDSSVFKQK  120 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~------~~~~~v~~~~~d~~~~~-~~~~~~~~~  120 (216)
                      ++.+|||+|||+|.++..++...+ ..++|+|+++.+++.|+.++..      .+..|+.++.+|+  .+ ++.....++
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~--~~~l~~~~~~~~  123 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNA--MKHLPNFFYKGQ  123 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCT--TTCHHHHCCTTC
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcH--HHhhhhhCCCcC
Confidence            566899999999999999998754 7999999999999999988754      3455899999999  65 331112278


Q ss_pred             ccEEEEcCCC
Q psy17460        121 VDTVIMNPPF  130 (216)
Q Consensus       121 ~D~vi~npp~  130 (216)
                      ||.|+++.|-
T Consensus       124 ~D~v~~~~~d  133 (235)
T 3ckk_A          124 LTKMFFLFPD  133 (235)
T ss_dssp             EEEEEEESCC
T ss_pred             eeEEEEeCCC
Confidence            9999987553

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.39  E-value=5e-14  Score=112.51  Aligned_cols=104  Identities=19%  Similarity=0.284  Sum_probs=83.1

Q ss_pred             CCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460         19 NPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI   97 (216)
Q Consensus        19 ~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~   97 (216)
                      .++..++| |.+...+.+.++..+.    ..++.+|||+|||+|.++..++..+ .+|+|+|+|+++++.++.++..  .
T Consensus         2 ~~~k~~gq~fl~~~~~~~~i~~~~~----~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~--~   74 (245)
T 1yub_A            2 NKNIKYSQNFLTSEKVLNQIIKQLN----LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL--N   74 (245)
T ss_dssp             CCCCCSCCCBCCCTTTHHHHHHHCC----CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT--C
T ss_pred             CCCcccCCCCCCCHHHHHHHHHhcC----CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc--C
Confidence            45677888 7777777777776653    2477899999999999999999887 5999999999999999888762  2


Q ss_pred             CceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         98 TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        98 ~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      .+++++.+|+  .+.+... .++| .|++||||...
T Consensus        75 ~~v~~~~~D~--~~~~~~~-~~~f-~vv~n~Py~~~  106 (245)
T 1yub_A           75 TRVTLIHQDI--LQFQFPN-KQRY-KIVGNIPYHLS  106 (245)
T ss_dssp             SEEEECCSCC--TTTTCCC-SSEE-EEEEECCSSSC
T ss_pred             CceEEEECCh--hhcCccc-CCCc-EEEEeCCcccc
Confidence            3899999999  6655431 1478 89999999854

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.39  E-value=5e-12  Score=99.80  Aligned_cols=80  Identities=19%  Similarity=0.201  Sum_probs=63.8

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc-cccccCccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD-SSVFKQKVD  122 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~~~D  122 (216)
                      ...++.+|||+|||+|.++..+++. ++ .+|+|+|+++.+++.+..++..+  .+++++.+|+  .+.. .....++||
T Consensus        74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~--~~~~~~~~~~~~~D  149 (233)
T 2ipx_A           74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDA--RHPHKYRMLIAMVD  149 (233)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCT--TCGGGGGGGCCCEE
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEccc--CChhhhcccCCcEE
Confidence            3456889999999999999998886 33 69999999999888888877665  3899999999  5532 111226899


Q ss_pred             EEEEcCC
Q psy17460        123 TVIMNPP  129 (216)
Q Consensus       123 ~vi~npp  129 (216)
                      +|++++|
T Consensus       150 ~V~~~~~  156 (233)
T 2ipx_A          150 VIFADVA  156 (233)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9999988

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.39  E-value=2.2e-12  Score=106.18  Aligned_cols=110  Identities=12%  Similarity=0.082  Sum_probs=74.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC------ceEEEEecccccccc------ccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT------NCDAILFEINEKSLD------SSV  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~------~v~~~~~d~~~~~~~------~~~  116 (216)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+.+....+..      ++++..+|+  ..-.      ...
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~--~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETI--RSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCT--TSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhc--ccchhhhhhhccc
Confidence            47899999999998776666655569999999999999999988765542      267778877  2211      001


Q ss_pred             ccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        117 FKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      ..++||+|+|.-.+|+. +.                       .....+++.+.++|+| +|.++....
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~-----------------------~~~~~~l~~~~r~Lkp-GG~~i~~~~  170 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHP-----------------------RHYATVMNNLSELTAS-GGKVLITTM  170 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCST-----------------------TTHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred             cCCCeeEEEECchHHHhCCH-----------------------HHHHHHHHHHHHHcCC-CCEEEEEeC
Confidence            12689999997666533 11                       1123455566666677 666665443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.39  E-value=3.8e-12  Score=106.02  Aligned_cols=106  Identities=20%  Similarity=0.159  Sum_probs=75.1

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhC-----------CCceEEEEeccccccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFE-----------ITNCDAILFEINEKSL  112 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~-----------~~~v~~~~~d~~~~~~  112 (216)
                      ...++.+|||+|||+|.++..++.. ++ .+|+++|+++.+++.|+.++...+           ..+++++.+|+  .+.
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~--~~~  179 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI--SGA  179 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT--TCC
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh--HHc
Confidence            3357889999999999999998886 66 799999999999999999987532           13799999999  655


Q ss_pred             ccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEee
Q psy17460        113 DSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHK  157 (216)
Q Consensus       113 ~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~  157 (216)
                      ......++||+|++|+|....    ..+.+.+++++++.++...+
T Consensus       180 ~~~~~~~~fD~V~~~~~~~~~----~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          180 TEDIKSLTFDAVALDMLNPHV----TLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             C-------EEEEEECSSSTTT----THHHHGGGEEEEEEEEEEES
T ss_pred             ccccCCCCeeEEEECCCCHHH----HHHHHHHhcCCCcEEEEEeC
Confidence            321112589999999874322    33444455566665554443

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.39  E-value=2.9e-12  Score=108.73  Aligned_cols=105  Identities=22%  Similarity=0.256  Sum_probs=80.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHh-----C-C--CceEEEEeccccccc-----
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEF-----E-I--TNCDAILFEINEKSL-----  112 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~-----~-~--~~v~~~~~d~~~~~~-----  112 (216)
                      .++.+|||+|||+|..+..++.. ++ .+|+|+|+++.+++.++.++...     + .  .+++++.+|+  .++     
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~--~~l~~~~~  159 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFI--ENLATAEP  159 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCT--TCGGGCBS
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccH--HHhhhccc
Confidence            46889999999999999988876 23 69999999999999999998754     3 2  3899999999  554     


Q ss_pred             -ccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        113 -DSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       113 -~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                       +...  ++||+|+++..+++..                         +...+++.+.++|+| +|.+++.
T Consensus       160 ~~~~~--~~fD~V~~~~~l~~~~-------------------------d~~~~l~~~~r~Lkp-gG~l~i~  202 (383)
T 4fsd_A          160 EGVPD--SSVDIVISNCVCNLST-------------------------NKLALFKEIHRVLRD-GGELYFS  202 (383)
T ss_dssp             CCCCT--TCEEEEEEESCGGGCS-------------------------CHHHHHHHHHHHEEE-EEEEEEE
T ss_pred             CCCCC--CCEEEEEEccchhcCC-------------------------CHHHHHHHHHHHcCC-CCEEEEE
Confidence             3332  7999999998876541                         234555566666667 6666654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.39  E-value=3.2e-12  Score=104.14  Aligned_cols=78  Identities=15%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh--C---------CCceEEEEecccccccccccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF--E---------ITNCDAILFEINEKSLDSSVF  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~--~---------~~~v~~~~~d~~~~~~~~~~~  117 (216)
                      ++++|||+|||+|.++..+++.+..+|+++|+|+.+++.|++++ ..  +         -++++++.+|+  .+....  
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~--~~~l~~--  149 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDG--FEFIKN--  149 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCH--HHHHHH--
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECch--HHHhcc--
Confidence            57899999999999999999885479999999999999999988 32  2         23799999999  665322  


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      .++||+|++|+|.+
T Consensus       150 ~~~fD~Ii~d~~~~  163 (281)
T 1mjf_A          150 NRGFDVIIADSTDP  163 (281)
T ss_dssp             CCCEEEEEEECCCC
T ss_pred             cCCeeEEEECCCCC
Confidence            27899999999864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.39  E-value=6.2e-12  Score=98.77  Aligned_cols=79  Identities=24%  Similarity=0.236  Sum_probs=64.2

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc-ccccCcccE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS-SVFKQKVDT  123 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~~D~  123 (216)
                      ..++.+|||+|||+|.++..++.. ++ .+|+|+|+++.+++.++.++...  ++++++.+|+  .+... ....++||+
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~--~~~~~~~~~~~~~D~  146 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDA--TKPEEYRALVPKVDV  146 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCT--TCGGGGTTTCCCEEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccC--CCcchhhcccCCceE
Confidence            457889999999999999998876 44 79999999999999999988765  4899999999  55321 111258999


Q ss_pred             EEEcCC
Q psy17460        124 VIMNPP  129 (216)
Q Consensus       124 vi~npp  129 (216)
                      |++++|
T Consensus       147 v~~~~~  152 (227)
T 1g8a_A          147 IFEDVA  152 (227)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999987

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.38  E-value=1.9e-12  Score=112.13  Aligned_cols=85  Identities=19%  Similarity=0.226  Sum_probs=71.5

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcC-C-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLG-A-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~-~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      ..++.+|||+|||+|..+..++... . .+|+++|+++.+++.++.++...++++++++.+|+  .+.+.....++||+|
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~--~~~~~~~~~~~fD~V  334 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDA--RKAPEIIGEEVADKV  334 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCT--TCCSSSSCSSCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcCh--hhcchhhccCCCCEE
Confidence            3578899999999999999988752 3 69999999999999999999999987899999999  665522222579999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      ++|||+...
T Consensus       335 l~D~Pcsg~  343 (450)
T 2yxl_A          335 LLDAPCTSS  343 (450)
T ss_dssp             EEECCCCCG
T ss_pred             EEcCCCCCC
Confidence            999999653

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=2.1e-12  Score=106.49  Aligned_cols=98  Identities=12%  Similarity=0.010  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHh---hcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460         32 HLAATILHTIQN---NYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEI  107 (216)
Q Consensus        32 ~~~~~~~~~~~~---~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~  107 (216)
                      .+.+.|+.....   ..+..+..+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++++....-++++++.+|+
T Consensus        69 ~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da  148 (317)
T 3gjy_A           69 EYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDA  148 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCH
T ss_pred             HHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcH
Confidence            455555555543   1122123499999999999999999843 369999999999999999998654434799999999


Q ss_pred             cccccccccccCcccEEEEcCCCC
Q psy17460        108 NEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       108 ~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                        .++......++||+|++|.+.+
T Consensus       149 --~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A          149 --RMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             --HHHHHTCCTTCEEEEEECCSTT
T ss_pred             --HHHHhhccCCCCCEEEECCCCc
Confidence              7664322226899999987544

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.38  E-value=1.5e-12  Score=103.18  Aligned_cols=73  Identities=14%  Similarity=0.209  Sum_probs=60.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccc--ccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL--DSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~~D~vi  125 (216)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++.+        ++++.+|+  .+.  +...  ++||+|+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~d~--~~~~~~~~~--~~fD~i~  106 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK--------FNVVKSDA--IEYLKSLPD--KYLDGVM  106 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT--------SEEECSCH--HHHHHTSCT--TCBSEEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh--------cceeeccH--HHHhhhcCC--CCeeEEE
Confidence            3568999999999999999988866 799999999999998876        67889999  554  3322  7999999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      ++..+++.
T Consensus       107 ~~~~l~~~  114 (240)
T 3dli_A          107 ISHFVEHL  114 (240)
T ss_dssp             EESCGGGS
T ss_pred             ECCchhhC
Confidence            98877655

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.38  E-value=4.9e-12  Score=104.32  Aligned_cols=84  Identities=17%  Similarity=0.180  Sum_probs=71.0

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccc-cCcccE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVF-KQKVDT  123 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~~D~  123 (216)
                      ..+|.+|||+|||+|..+..++.. + ..+|+++|+++.+++.++.|+..+++.+++++.+|+  .++..... ..+||.
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~--~~~~~~~~~~~~fD~  177 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDF--LAVSPSDPRYHEVHY  177 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG--GGSCTTCGGGTTEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCh--HhcCccccccCCCCE
Confidence            357899999999999999998875 3 379999999999999999999999988899999999  66543211 147999


Q ss_pred             EEEcCCCCC
Q psy17460        124 VIMNPPFGT  132 (216)
Q Consensus       124 vi~npp~~~  132 (216)
                      |++|||+..
T Consensus       178 Vl~D~PcSg  186 (309)
T 2b9e_A          178 ILLDPSCSG  186 (309)
T ss_dssp             EEECCCCCC
T ss_pred             EEEcCCcCC
Confidence            999999954

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.37  E-value=7.7e-12  Score=99.30  Aligned_cols=105  Identities=11%  Similarity=0.045  Sum_probs=83.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccc-----ccCc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSV-----FKQK  120 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~-----~~~~  120 (216)
                      ++++|||+|||+|..+..+++. . ..+++++|+++++++.|++++...++. +++++.+|+  .+.....     ..++
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda--~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA--MLALDNLLQGQESEGS  147 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH--HHHHHHHHHSTTCTTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH--HHHHHHHHhccCCCCC
Confidence            6789999999999999998886 2 369999999999999999999988886 699999999  6643211     0268


Q ss_pred             ccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        121 VDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       121 ~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      ||+|+++.+..                            ....+++.+.++|+| +|.++++..
T Consensus       148 fD~I~~d~~~~----------------------------~~~~~l~~~~~~L~p-GG~lv~d~~  182 (237)
T 3c3y_A          148 YDFGFVDADKP----------------------------NYIKYHERLMKLVKV-GGIVAYDNT  182 (237)
T ss_dssp             EEEEEECSCGG----------------------------GHHHHHHHHHHHEEE-EEEEEEECT
T ss_pred             cCEEEECCchH----------------------------HHHHHHHHHHHhcCC-CeEEEEecC
Confidence            99999986421                            123566677888899 999888653

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.37  E-value=6.2e-12  Score=102.13  Aligned_cols=81  Identities=10%  Similarity=0.083  Sum_probs=66.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHh--CC--CceEEEEecccccccccccccCcccE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEF--EI--TNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      .+++|||+|||+|.++.++++. +..+|+++|+|+.+++.|++++...  ++  ++++++.+|+  .+.... ..++||+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~--~~~l~~-~~~~fD~  151 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG--FMHIAK-SENQYDV  151 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS--HHHHHT-CCSCEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH--HHHHhh-CCCCeeE
Confidence            5789999999999999999987 4479999999999999999988542  22  3799999999  664322 1268999


Q ss_pred             EEEcCCCCC
Q psy17460        124 VIMNPPFGT  132 (216)
Q Consensus       124 vi~npp~~~  132 (216)
                      |++|+|.+.
T Consensus       152 Ii~d~~~~~  160 (275)
T 1iy9_A          152 IMVDSTEPV  160 (275)
T ss_dssp             EEESCSSCC
T ss_pred             EEECCCCCC
Confidence            999998753

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.37  E-value=1.6e-12  Score=110.25  Aligned_cols=99  Identities=20%  Similarity=0.171  Sum_probs=77.8

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCCc--eEEEEeccccccccc-ccccCcccE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEITN--CDAILFEINEKSLDS-SVFKQKVDT  123 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~~--v~~~~~d~~~~~~~~-~~~~~~~D~  123 (216)
                      +|.+|||++||+|.+++.++..  |+.+|+++|+++.+++.+++|++.+++.+  ++++.+|+  .++.. .. .++||+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da--~~~l~~~~-~~~fD~  128 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEA--NFFLRKEW-GFGFDY  128 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH--HHHHHSCC-SSCEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCH--HHHHHHhh-CCCCcE
Confidence            5789999999999999998885  45799999999999999999999999874  99999999  66543 21 258999


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHhhcCCc---eEEEe
Q psy17460        124 VIMNPPFGTRNCGIDLAFVQYAADISKV---VYSLH  156 (216)
Q Consensus       124 vi~npp~~~~~~~~~~~~~~~~l~~~~~---ly~~~  156 (216)
                      |++|| |..     ...++..++...+.   +|..+
T Consensus       129 V~lDP-~g~-----~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          129 VDLDP-FGT-----PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEECC-SSC-----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECC-CcC-----HHHHHHHHHHHhCCCCEEEEEe
Confidence            99999 432     23466666654333   66555

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.37  E-value=2.1e-11  Score=96.55  Aligned_cols=93  Identities=18%  Similarity=0.183  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEK  110 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  110 (216)
                      +...++..+.. +...+|.+|||+|||+|..+..++.. ++ ++|+|+|+++.+++.+.......  .|+.++.+|+  .
T Consensus        61 la~~ll~~l~~-~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da--~  135 (232)
T 3id6_C           61 LAGAILKGLKT-NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADA--R  135 (232)
T ss_dssp             HHHHHHTTCSC-CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCT--T
T ss_pred             HHHHHHhhhhh-cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEccc--c
Confidence            44444443321 23568999999999999999888875 43 79999999999876555544432  3899999999  5


Q ss_pred             cccc-ccccCcccEEEEcCCC
Q psy17460        111 SLDS-SVFKQKVDTVIMNPPF  130 (216)
Q Consensus       111 ~~~~-~~~~~~~D~vi~npp~  130 (216)
                      .... ....++||+|++|.+.
T Consensus       136 ~~~~~~~~~~~~D~I~~d~a~  156 (232)
T 3id6_C          136 FPQSYKSVVENVDVLYVDIAQ  156 (232)
T ss_dssp             CGGGTTTTCCCEEEEEECCCC
T ss_pred             cchhhhccccceEEEEecCCC
Confidence            4321 1112689999999875

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.37  E-value=5.9e-12  Score=104.95  Aligned_cols=81  Identities=16%  Similarity=0.111  Sum_probs=65.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHh--CC--CceEEEEecccccccccccccCccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEF--EI--TNCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      ..+++|||+|||+|.++..+++..+ .+|+++|+|+.+++.|++++...  ++  ++++++.+|+  .+.......++||
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~--~~~l~~~~~~~fD  196 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG--VAFLKNAAEGSYD  196 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH--HHHHHTSCTTCEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCH--HHHHHhccCCCcc
Confidence            4578999999999999999998743 79999999999999999998653  33  3799999999  6653221126899


Q ss_pred             EEEEcCCC
Q psy17460        123 TVIMNPPF  130 (216)
Q Consensus       123 ~vi~npp~  130 (216)
                      +|++|++-
T Consensus       197 lIi~d~~~  204 (334)
T 1xj5_A          197 AVIVDSSD  204 (334)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999863

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.37  E-value=7.2e-12  Score=99.34  Aligned_cols=95  Identities=8%  Similarity=0.015  Sum_probs=72.1

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEe
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILF  105 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~  105 (216)
                      ......+.+...+...    ++.+|||+|||+|..+..++...  ..+|+++|+++.+++.|+.++...+.. +++++.+
T Consensus        44 ~~~~~~~~l~~l~~~~----~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~  119 (239)
T 2hnk_A           44 ISPEEGQFLNILTKIS----GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG  119 (239)
T ss_dssp             CCHHHHHHHHHHHHHH----TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred             cCHHHHHHHHHHHHhh----CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC
Confidence            3444555554444332    67899999999999999988873  369999999999999999999888876 4999999


Q ss_pred             ccccccccccc-------------c-c-CcccEEEEcCC
Q psy17460        106 EINEKSLDSSV-------------F-K-QKVDTVIMNPP  129 (216)
Q Consensus       106 d~~~~~~~~~~-------------~-~-~~~D~vi~npp  129 (216)
                      |+  .+.....             . . ++||+|+++..
T Consensus       120 d~--~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~  156 (239)
T 2hnk_A          120 SA--LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD  156 (239)
T ss_dssp             CH--HHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC
T ss_pred             CH--HHHHHHHHhhcccccccccccCCCCCcCEEEEeCC
Confidence            99  5532111             0 1 58999999754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.36  E-value=7.3e-12  Score=97.65  Aligned_cols=108  Identities=19%  Similarity=0.208  Sum_probs=80.7

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccc---
Q psy17460         36 TILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL---  112 (216)
Q Consensus        36 ~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---  112 (216)
                      .++..+..    .++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.+      .++.++.+|+  .+.   
T Consensus        43 ~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~--~~~~~~  109 (227)
T 3e8s_A           43 AILLAILG----RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA------GAGEVHLASY--AQLAEA  109 (227)
T ss_dssp             HHHHHHHH----TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT------CSSCEEECCH--HHHHTT
T ss_pred             HHHHHhhc----CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh------cccccchhhH--Hhhccc
Confidence            34444444    3678999999999999999998865 899999999999999988      2678899998  554   


Q ss_pred             ccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        113 DSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       113 ~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      +.. ...+||+|+++..++ .                         .+...+++.+.++|+| +|.+++...
T Consensus       110 ~~~-~~~~fD~v~~~~~l~-~-------------------------~~~~~~l~~~~~~L~p-gG~l~~~~~  153 (227)
T 3e8s_A          110 KVP-VGKDYDLICANFALL-H-------------------------QDIIELLSAMRTLLVP-GGALVIQTL  153 (227)
T ss_dssp             CSC-CCCCEEEEEEESCCC-S-------------------------SCCHHHHHHHHHTEEE-EEEEEEEEC
T ss_pred             ccc-cCCCccEEEECchhh-h-------------------------hhHHHHHHHHHHHhCC-CeEEEEEec
Confidence            221 125699999988776 2                         1234566677778888 888777543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.36  E-value=1.2e-11  Score=96.37  Aligned_cols=112  Identities=14%  Similarity=0.193  Sum_probs=81.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHH----HHhhhHhCCCceEEEEecccccccccccccCccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIF----IDNKNEFEITNCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~----~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      .++.+|||+|||+|.++..++...+ .+|+|+|+++.+++.+    +.+....+.++++++.+|+  .+++...  +. |
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~--~~l~~~~--~~-d  100 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATA--ERLPPLS--GV-G  100 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCS--TTCCSCC--CE-E
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecch--hhCCCCC--CC-C
Confidence            3678999999999999999998864 7999999999987753    3344456666899999999  6666543  45 8


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460        123 TVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       123 ~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      .|++..++...        ....+.            +...+++.+.++|+| +|.+++..+.
T Consensus       101 ~v~~~~~~~~~--------~~~~~~------------~~~~~l~~~~~~Lkp-gG~l~~~~~~  142 (218)
T 3mq2_A          101 ELHVLMPWGSL--------LRGVLG------------SSPEMLRGMAAVCRP-GASFLVALNL  142 (218)
T ss_dssp             EEEEESCCHHH--------HHHHHT------------SSSHHHHHHHHTEEE-EEEEEEEEEG
T ss_pred             EEEEEccchhh--------hhhhhc------------cHHHHHHHHHHHcCC-CcEEEEEecc
Confidence            88876665311        000111            124677888999999 9999986653

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=1.9e-12  Score=104.00  Aligned_cols=106  Identities=16%  Similarity=0.148  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccc
Q psy17460         31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEK  110 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  110 (216)
                      ..+.+.++..+    ...++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.++.+.      +++++.+|+  .
T Consensus        20 ~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~--~   86 (261)
T 3ege_A           20 IRIVNAIINLL----NLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP------QVEWFTGYA--E   86 (261)
T ss_dssp             HHHHHHHHHHH----CCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT------TEEEECCCT--T
T ss_pred             HHHHHHHHHHh----CCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc------CCEEEECch--h
Confidence            34555554444    33478899999999999999999865 49999999999998776654      789999999  6


Q ss_pred             ccccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCce
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVV  152 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~l  152 (216)
                      +++...  ++||+|+++..+++. +.....+.+.++++ ++.+
T Consensus        87 ~~~~~~--~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~  126 (261)
T 3ege_A           87 NLALPD--KSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTI  126 (261)
T ss_dssp             SCCSCT--TCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCE
T ss_pred             hCCCCC--CCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEE
Confidence            666543  799999999988776 33344556667777 7653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.35  E-value=1.5e-12  Score=104.48  Aligned_cols=97  Identities=12%  Similarity=0.164  Sum_probs=74.4

Q ss_pred             cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCE--EEEEeCChHHHHHHHHhhhHhCCCceEEE
Q psy17460         26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADF--CFALECDKEILDIFIDNKNEFEITNCDAI  103 (216)
Q Consensus        26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~--v~~iD~~~~~~~~~~~~~~~~~~~~v~~~  103 (216)
                      +|-+...+.+.++..+..    .++.+|||+|||+|.++. +.. +. +  |+|+|+|+++++.+++++...  ++++++
T Consensus         2 nfL~d~~i~~~iv~~~~~----~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~--~~v~~i   72 (252)
T 1qyr_A            2 NFLNDQFVIDSIVSAINP----QKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG--PKLTIY   72 (252)
T ss_dssp             CEECCHHHHHHHHHHHCC----CTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG--GGEEEE
T ss_pred             CCcCCHHHHHHHHHhcCC----CCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC--CceEEE
Confidence            355667777777776643    467899999999999999 654 43 5  999999999999999987643  389999


Q ss_pred             Eecccccccccccc---cCcccEEEEcCCCCCC
Q psy17460        104 LFEINEKSLDSSVF---KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       104 ~~d~~~~~~~~~~~---~~~~D~vi~npp~~~~  133 (216)
                      .+|+  .++++...   .+..|.|++|+||...
T Consensus        73 ~~D~--~~~~~~~~~~~~~~~~~vvsNlPY~i~  103 (252)
T 1qyr_A           73 QQDA--MTFNFGELAEKMGQPLRVFGNLPYNIS  103 (252)
T ss_dssp             CSCG--GGCCHHHHHHHHTSCEEEEEECCTTTH
T ss_pred             ECch--hhCCHHHhhcccCCceEEEECCCCCcc
Confidence            9999  66654321   1245899999999753

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.34  E-value=9e-12  Score=98.16  Aligned_cols=113  Identities=13%  Similarity=0.110  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc
Q psy17460         35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS  114 (216)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  114 (216)
                      +.+...+....  .++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.+..     +++++.+|+  .+.+.
T Consensus        28 ~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~-----~~~~~~~d~--~~~~~   97 (239)
T 3bxo_A           28 SDIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP-----DATLHQGDM--RDFRL   97 (239)
T ss_dssp             HHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT-----TCEEEECCT--TTCCC
T ss_pred             HHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC-----CCEEEECCH--HHccc
Confidence            33444444432  3678999999999999999988866 89999999999999998752     689999999  66654


Q ss_pred             ccccCcccEEEEcC-CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        115 SVFKQKVDTVIMNP-PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       115 ~~~~~~~D~vi~np-p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      .   ++||+|+|.. .+++..                      .......+++.+.++|+| +|.+++..
T Consensus        98 ~---~~~D~v~~~~~~~~~~~----------------------~~~~~~~~l~~~~~~L~p-gG~l~~~~  141 (239)
T 3bxo_A           98 G---RKFSAVVSMFSSVGYLK----------------------TTEELGAAVASFAEHLEP-GGVVVVEP  141 (239)
T ss_dssp             S---SCEEEEEECTTGGGGCC----------------------SHHHHHHHHHHHHHTEEE-EEEEEECC
T ss_pred             C---CCCcEEEEcCchHhhcC----------------------CHHHHHHHHHHHHHhcCC-CeEEEEEe
Confidence            2   7999999632 333220                      012335677778889999 99988864

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.34  E-value=1.6e-11  Score=94.38  Aligned_cols=120  Identities=13%  Similarity=0.082  Sum_probs=78.5

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc
Q psy17460         36 TILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS  115 (216)
Q Consensus        36 ~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  115 (216)
                      .+.......-...++.+|||+|||+|.++..+++. ..+|+|+|+++.           ...++++++++|+  .+....
T Consensus        12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~-----------~~~~~v~~~~~D~--~~~~~~   77 (191)
T 3dou_A           12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEM-----------EEIAGVRFIRCDI--FKETIF   77 (191)
T ss_dssp             HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCC-----------CCCTTCEEEECCT--TSSSHH
T ss_pred             HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccc-----------ccCCCeEEEEccc--cCHHHH
Confidence            34444443322347889999999999999999988 569999999984           1233799999999  654321


Q ss_pred             c-----cc----CcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        116 V-----FK----QKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       116 ~-----~~----~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      .     ..    ++||+|++|++........ ... .....            ..+.+++.+.++|+| +|.+++..-
T Consensus        78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~-~d~-~~~~~------------l~~~~l~~a~~~Lkp-GG~lv~k~~  140 (191)
T 3dou_A           78 DDIDRALREEGIEKVDDVVSDAMAKVSGIPS-RDH-AVSYQ------------IGQRVMEIAVRYLRN-GGNVLLKQF  140 (191)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECCCCCCCSCHH-HHH-HHHHH------------HHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred             HHHHHHhhcccCCcceEEecCCCcCCCCCcc-cCH-HHHHH------------HHHHHHHHHHHHccC-CCEEEEEEc
Confidence            0     01    3899999998765331000 000 01111            124567778889999 999987654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.34  E-value=1.3e-11  Score=97.54  Aligned_cols=104  Identities=12%  Similarity=0.012  Sum_probs=79.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccc--c--Ccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVF--K--QKV  121 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~--~--~~~  121 (216)
                      ++.+|||+|||+|..+..++...  ..+++++|+++++++.|+.++...++. +++++.+|+  .+......  .  ++|
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~--~~~l~~l~~~~~~~~f  149 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA--LATLEQLTQGKPLPEF  149 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH--HHHHHHHHTSSSCCCE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH--HHHHHHHHhcCCCCCc
Confidence            67799999999999999988863  269999999999999999999888875 699999998  55322211  1  589


Q ss_pred             cEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        122 DTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       122 D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      |+|+++.+..                            ....+++.+.++|+| +|.+++..
T Consensus       150 D~V~~d~~~~----------------------------~~~~~l~~~~~~Lkp-gG~lv~~~  182 (232)
T 3cbg_A          150 DLIFIDADKR----------------------------NYPRYYEIGLNLLRR-GGLMVIDN  182 (232)
T ss_dssp             EEEEECSCGG----------------------------GHHHHHHHHHHTEEE-EEEEEEEC
T ss_pred             CEEEECCCHH----------------------------HHHHHHHHHHHHcCC-CeEEEEeC
Confidence            9999987521                            123455556677777 77777643

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.34  E-value=5e-12  Score=100.29  Aligned_cols=103  Identities=14%  Similarity=0.093  Sum_probs=75.5

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc---ccCcccEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV---FKQKVDTV  124 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~~D~v  124 (216)
                      .++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.++.+..   ..+++++.+|+  .+.+...   ...+||+|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~--~~~~~~~~~~~~~~~d~v  128 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT---AANISYRLLDG--LVPEQAAQIHSEIGDANI  128 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC---CTTEEEEECCT--TCHHHHHHHHHHHCSCEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc---ccCceEEECcc--cccccccccccccCccEE
Confidence            4677999999999999999999877 89999999999999999873   22799999999  6644321   01249999


Q ss_pred             EEcCCCCCCCCCC---CHHHHHHHhhcCCceEEEe
Q psy17460        125 IMNPPFGTRNCGI---DLAFVQYAADISKVVYSLH  156 (216)
Q Consensus       125 i~npp~~~~~~~~---~~~~~~~~l~~~~~ly~~~  156 (216)
                      +++..+++.....   ..+.+.+++++++.++...
T Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            9999888774322   2333445555555533333

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.34  E-value=9.9e-12  Score=101.94  Aligned_cols=80  Identities=15%  Similarity=0.182  Sum_probs=63.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhH--hCC--CceEEEEecccccccccccccCcccE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNE--FEI--TNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~--~~~--~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      .+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..  .++  ++++++.+|+  .+.... ..++||+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~--~~~l~~-~~~~fD~  166 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG--AEYVRK-FKNEFDV  166 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH--HHHGGG-CSSCEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH--HHHHhh-CCCCceE
Confidence            5689999999999999999987 347999999999999999999854  222  3799999999  664322 1268999


Q ss_pred             EEEcCCCC
Q psy17460        124 VIMNPPFG  131 (216)
Q Consensus       124 vi~npp~~  131 (216)
                      |++|+|..
T Consensus       167 Ii~d~~~~  174 (296)
T 1inl_A          167 IIIDSTDP  174 (296)
T ss_dssp             EEEEC---
T ss_pred             EEEcCCCc
Confidence            99998753

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.34  E-value=9e-12  Score=102.57  Aligned_cols=83  Identities=14%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHh----CCCceEEEEecccccccccccccCccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEF----EITNCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      .++.+|||+|||+|.++..+++... .+|+++|+|+.+++.|++++...    ..++++++.+|+  .+.+.....++||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~--~~~~~~~~~~~fD  171 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDG--LAFVRQTPDNTYD  171 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH--HHHHHSSCTTCEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcH--HHHHHhccCCcee
Confidence            4678999999999999999988743 69999999999999999987421    123799999999  7665321127899


Q ss_pred             EEEEcCCCCC
Q psy17460        123 TVIMNPPFGT  132 (216)
Q Consensus       123 ~vi~npp~~~  132 (216)
                      +|++|++...
T Consensus       172 vIi~d~~~~~  181 (304)
T 3bwc_A          172 VVIIDTTDPA  181 (304)
T ss_dssp             EEEEECC---
T ss_pred             EEEECCCCcc
Confidence            9999988653

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.33  E-value=1.6e-11  Score=98.44  Aligned_cols=82  Identities=18%  Similarity=0.178  Sum_probs=63.8

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc
Q psy17460         36 TILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS  115 (216)
Q Consensus        36 ~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  115 (216)
                      .+...+...++  ++.+|||+|||+|.++..++..+. +++|+|+|+.+++.++.+...    +  ++.+|+  .+++..
T Consensus        43 ~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~----~--~~~~d~--~~~~~~  111 (260)
T 2avn_A           43 LIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK----N--VVEAKA--EDLPFP  111 (260)
T ss_dssp             HHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS----C--EEECCT--TSCCSC
T ss_pred             HHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC----C--EEECcH--HHCCCC
Confidence            34444444433  678999999999999999988865 899999999999999988651    2  889999  666543


Q ss_pred             cccCcccEEEEcCCC
Q psy17460        116 VFKQKVDTVIMNPPF  130 (216)
Q Consensus       116 ~~~~~~D~vi~npp~  130 (216)
                      .  ++||+|++..++
T Consensus       112 ~--~~fD~v~~~~~~  124 (260)
T 2avn_A          112 S--GAFEAVLALGDV  124 (260)
T ss_dssp             T--TCEEEEEECSSH
T ss_pred             C--CCEEEEEEcchh
Confidence            2  789999997543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.33  E-value=1.3e-11  Score=102.09  Aligned_cols=82  Identities=15%  Similarity=0.146  Sum_probs=66.3

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhH--hC---CCceEEEEecccccccccccccCcc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNE--FE---ITNCDAILFEINEKSLDSSVFKQKV  121 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~--~~---~~~v~~~~~d~~~~~~~~~~~~~~~  121 (216)
                      ..+++|||+|||+|..+..+++.. ..+|+++|+|+.+++.|++++..  .+   .++++++.+|+  .+.... ..++|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~--~~~l~~-~~~~f  152 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA--RAYLER-TEERY  152 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH--HHHHHH-CCCCE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchH--HHHHHh-cCCCc
Confidence            356899999999999999999874 37999999999999999998864  22   23799999999  664321 12689


Q ss_pred             cEEEEcCCCCC
Q psy17460        122 DTVIMNPPFGT  132 (216)
Q Consensus       122 D~vi~npp~~~  132 (216)
                      |+|++|++.+.
T Consensus       153 D~Ii~d~~~~~  163 (314)
T 1uir_A          153 DVVIIDLTDPV  163 (314)
T ss_dssp             EEEEEECCCCB
T ss_pred             cEEEECCCCcc
Confidence            99999988754

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.33  E-value=2.8e-12  Score=103.25  Aligned_cols=114  Identities=9%  Similarity=0.065  Sum_probs=78.1

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC----------------------------
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI----------------------------   97 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~----------------------------   97 (216)
                      ...++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++.....                            
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            3457889999999999988877777766899999999999999987644210                            


Q ss_pred             -CceE-EEEeccccccc-ccc-cccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcC
Q psy17460         98 -TNCD-AILFEINEKSL-DSS-VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKN  173 (216)
Q Consensus        98 -~~v~-~~~~d~~~~~~-~~~-~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~  173 (216)
                       .++. ++.+|+  .+. +.. ...++||+|+++-.+++...                     ...+...+++...++|+
T Consensus       132 ~~~i~~~~~~D~--~~~~~~~~~~~~~fD~V~~~~~l~~i~~---------------------~~~~~~~~l~~i~r~LK  188 (263)
T 2a14_A          132 RAAVKRVLKCDV--HLGNPLAPAVLPLADCVLTLLAMECACC---------------------SLDAYRAALCNLASLLK  188 (263)
T ss_dssp             HHHEEEEEECCT--TSSSTTTTCCCCCEEEEEEESCHHHHCS---------------------SHHHHHHHHHHHHTTEE
T ss_pred             HhhhheEEeccc--cCCCCCCccccCCCCEeeehHHHHHhcC---------------------CHHHHHHHHHHHHHHcC
Confidence             0244 899999  553 211 11268999999765442100                     00122345666778888


Q ss_pred             ccceeeeeee
Q psy17460        174 VEQVDVIAEM  183 (216)
Q Consensus       174 ~~~g~~~~~~  183 (216)
                      | +|.+++..
T Consensus       189 P-GG~li~~~  197 (263)
T 2a14_A          189 P-GGHLVTTV  197 (263)
T ss_dssp             E-EEEEEEEE
T ss_pred             C-CcEEEEEE
Confidence            8 88887754

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.32  E-value=5.7e-12  Score=94.42  Aligned_cols=96  Identities=11%  Similarity=0.218  Sum_probs=74.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.+     .++++++.+|.     +..  .++||+|+++
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d~-----~~~--~~~~D~v~~~   82 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----FDSVITLSDPK-----EIP--DNSVDFILFA   82 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----CTTSEEESSGG-----GSC--TTCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----CCCcEEEeCCC-----CCC--CCceEEEEEc
Confidence            3678999999999999999998875 999999999999999988     22789998882     222  2689999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      ..+++..                         +...+++.+.++|+| +|.+++.
T Consensus        83 ~~l~~~~-------------------------~~~~~l~~~~~~L~p-gG~l~~~  111 (170)
T 3i9f_A           83 NSFHDMD-------------------------DKQHVISEVKRILKD-DGRVIII  111 (170)
T ss_dssp             SCSTTCS-------------------------CHHHHHHHHHHHEEE-EEEEEEE
T ss_pred             cchhccc-------------------------CHHHHHHHHHHhcCC-CCEEEEE
Confidence            8877551                         234556666677777 7776664

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.32  E-value=2.9e-11  Score=109.85  Aligned_cols=83  Identities=17%  Similarity=0.145  Sum_probs=70.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhH------hCCCceEEEEecccccccccccccC
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNE------FEITNCDAILFEINEKSLDSSVFKQ  119 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~------~~~~~v~~~~~d~~~~~~~~~~~~~  119 (216)
                      .++.+|||+|||+|.++..+++.++  .+|+|+|+++.+++.|++++..      .+..+++++.+|+  .+++...  +
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa--~dLp~~d--~  795 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI--LEFDSRL--H  795 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT--TSCCTTS--C
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch--HhCCccc--C
Confidence            3788999999999999999999873  6999999999999999986653      2455899999999  7766543  7


Q ss_pred             cccEEEEcCCCCCCC
Q psy17460        120 KVDTVIMNPPFGTRN  134 (216)
Q Consensus       120 ~~D~vi~npp~~~~~  134 (216)
                      +||+|++...+++..
T Consensus       796 sFDlVV~~eVLeHL~  810 (950)
T 3htx_A          796 DVDIGTCLEVIEHME  810 (950)
T ss_dssp             SCCEEEEESCGGGSC
T ss_pred             CeeEEEEeCchhhCC
Confidence            899999998888763

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.32  E-value=5e-12  Score=103.83  Aligned_cols=81  Identities=21%  Similarity=0.229  Sum_probs=68.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc---ccCcccE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV---FKQKVDT  123 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~~D~  123 (216)
                      .++.+|||+|||+|..+..+++.. ..+|+|+|+|+.+++.|+.++..++ .+++++.+|+  .+++...   ..++||.
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~--~~l~~~l~~~g~~~~D~  101 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSY--READFLLKTLGIEKVDG  101 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCG--GGHHHHHHHTTCSCEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCH--HHHHHHHHhcCCCCCCE
Confidence            478899999999999999999875 3799999999999999999998877 4899999999  6654211   1147999


Q ss_pred             EEEcCCCC
Q psy17460        124 VIMNPPFG  131 (216)
Q Consensus       124 vi~npp~~  131 (216)
                      |++|||+.
T Consensus       102 Vl~D~gvS  109 (301)
T 1m6y_A          102 ILMDLGVS  109 (301)
T ss_dssp             EEEECSCC
T ss_pred             EEEcCccc
Confidence            99999875

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.32  E-value=1.6e-11  Score=101.05  Aligned_cols=81  Identities=11%  Similarity=0.077  Sum_probs=65.2

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhH--hCC--CceEEEEecccccccccccccCccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNE--FEI--TNCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~--~~~--~~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      ..+++|||+|||+|.++..+++..+ .+|+++|+|+.+++.|++++..  .++  ++++++.+|+  .+.... ..++||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da--~~~l~~-~~~~fD  170 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG--FEFMKQ-NQDAFD  170 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH--HHHHHT-CSSCEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcH--HHHHhh-CCCCce
Confidence            4678999999999999999998854 7999999999999999999865  232  3799999999  664321 126899


Q ss_pred             EEEEcCCCC
Q psy17460        123 TVIMNPPFG  131 (216)
Q Consensus       123 ~vi~npp~~  131 (216)
                      +|++|+|.+
T Consensus       171 ~Ii~d~~~~  179 (304)
T 2o07_A          171 VIITDSSDP  179 (304)
T ss_dssp             EEEEECC--
T ss_pred             EEEECCCCC
Confidence            999998864

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.31  E-value=2.2e-11  Score=99.26  Aligned_cols=81  Identities=14%  Similarity=0.127  Sum_probs=66.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhC----CCceEEEEecccccccccccccCccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFE----ITNCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      .++++|||+|||+|..+..+++..+ .+|+++|+|+.+++.|++++...+    .++++++.+|+  .+..... .++||
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~--~~~l~~~-~~~fD  153 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDA--SKFLENV-TNTYD  153 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCH--HHHHHHC-CSCEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECCh--HHHHHhC-CCCce
Confidence            4678999999999999999998753 799999999999999999986532    23799999999  6653221 26899


Q ss_pred             EEEEcCCCC
Q psy17460        123 TVIMNPPFG  131 (216)
Q Consensus       123 ~vi~npp~~  131 (216)
                      +|++|++.+
T Consensus       154 ~Ii~d~~~~  162 (283)
T 2i7c_A          154 VIIVDSSDP  162 (283)
T ss_dssp             EEEEECCCT
T ss_pred             EEEEcCCCC
Confidence            999988654

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.29  E-value=9.7e-12  Score=101.43  Aligned_cols=80  Identities=11%  Similarity=0.171  Sum_probs=57.0

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceE-EEEeccccccccccc-ccCcccEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCD-AILFEINEKSLDSSV-FKQKVDTV  124 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~-~~~~~D~v  124 (216)
                      ..++.+|||+|||||.++..+++.++.+|+|+|++++|++.+.++-.     ++. +...|+  ..+.... ...+||+|
T Consensus        83 ~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~-----rv~~~~~~ni--~~l~~~~l~~~~fD~v  155 (291)
T 3hp7_A           83 SVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD-----RVRSMEQYNF--RYAEPVDFTEGLPSFA  155 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT-----TEEEECSCCG--GGCCGGGCTTCCCSEE
T ss_pred             CccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----ccceecccCc--eecchhhCCCCCCCEE
Confidence            34688999999999999999999887899999999999988544321     222 223455  3333221 11359999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      +++..|+..
T Consensus       156 ~~d~sf~sl  164 (291)
T 3hp7_A          156 SIDVSFISL  164 (291)
T ss_dssp             EECCSSSCG
T ss_pred             EEEeeHhhH
Confidence            999988743

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.29  E-value=8.4e-12  Score=95.25  Aligned_cols=78  Identities=15%  Similarity=0.149  Sum_probs=64.7

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++.+|||+|||+|.+++.++...+ .+++++|+|+.|++.++.++..++.. ++.+  .|.  ...+..   ++||+|++
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~--~~~~~~---~~~DvVLa  121 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNK--ESDVYK---GTYDVVFL  121 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECC--HHHHTT---SEEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecc--cccCCC---CCcChhhH
Confidence            467999999999999999887743 69999999999999999999999986 5666  666  443322   78999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      .--+|..
T Consensus       122 ~k~LHlL  128 (200)
T 3fzg_A          122 LKMLPVL  128 (200)
T ss_dssp             ETCHHHH
T ss_pred             hhHHHhh
Confidence            8877765

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.29  E-value=1.3e-11  Score=101.98  Aligned_cols=79  Identities=18%  Similarity=0.146  Sum_probs=64.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHh--CC--CceEEEEecccccccccccccCcccE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEF--EI--TNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      .+++|||+|||+|..+..+++..+ .+|+++|+|+.+++.|++++...  ++  ++++++.+|+  .+.... ..++||+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~--~~~l~~-~~~~fD~  184 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG--FEFLKN-HKNEFDV  184 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH--HHHHHH-CTTCEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChH--HHHHHh-cCCCceE
Confidence            567999999999999999998743 79999999999999999998653  22  3799999999  664322 2268999


Q ss_pred             EEEcCCC
Q psy17460        124 VIMNPPF  130 (216)
Q Consensus       124 vi~npp~  130 (216)
                      |++|++.
T Consensus       185 Ii~d~~~  191 (314)
T 2b2c_A          185 IITDSSD  191 (314)
T ss_dssp             EEECCC-
T ss_pred             EEEcCCC
Confidence            9999864

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.29  E-value=1.9e-11  Score=101.32  Aligned_cols=78  Identities=13%  Similarity=0.150  Sum_probs=64.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhH--hCC--CceEEEEecccccccccccccCcccE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNE--FEI--TNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~--~~~--~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++++..  .++  ++++++.+|+  .+.... ..++||+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~--~~~l~~-~~~~fDv  192 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDA--SKFLEN-VTNTYDV  192 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCH--HHHHHH-CCSCEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccH--HHHHhh-cCCCceE
Confidence            56899999999999999999874 37999999999999999999865  222  3799999999  664321 1268999


Q ss_pred             EEEcCC
Q psy17460        124 VIMNPP  129 (216)
Q Consensus       124 vi~npp  129 (216)
                      |++|++
T Consensus       193 Ii~d~~  198 (321)
T 2pt6_A          193 IIVDSS  198 (321)
T ss_dssp             EEEECC
T ss_pred             EEECCc
Confidence            999985

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.28  E-value=1e-11  Score=99.27  Aligned_cols=114  Identities=9%  Similarity=0.041  Sum_probs=81.4

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC----------------------------
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI----------------------------   97 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~----------------------------   97 (216)
                      ...++.+|||+|||+|.++..++..+..+|+|+|+++.+++.+++++...+.                            
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            3356789999999999999988887666899999999999999988765331                            


Q ss_pred             -Cce-EEEEeccccccccc--ccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcC
Q psy17460         98 -TNC-DAILFEINEKSLDS--SVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKN  173 (216)
Q Consensus        98 -~~v-~~~~~d~~~~~~~~--~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~  173 (216)
                       .++ +++.+|+  .+...  ....++||+|+++..++....                     .......+++.+.++|+
T Consensus       133 ~~~v~~~~~~d~--~~~~~~~~~~~~~fD~v~~~~~l~~~~~---------------------~~~~~~~~l~~~~~~Lk  189 (265)
T 2i62_A          133 RRAIKQVLKCDV--TQSQPLGGVSLPPADCLLSTLCLDAACP---------------------DLPAYRTALRNLGSLLK  189 (265)
T ss_dssp             HHHEEEEEECCT--TSSSTTTTCCCCCEEEEEEESCHHHHCS---------------------SHHHHHHHHHHHHTTEE
T ss_pred             hhhheeEEEeee--ccCCCCCccccCCccEEEEhhhhhhhcC---------------------ChHHHHHHHHHHHhhCC
Confidence             027 8999999  55432  112258999999765431100                     01133456677788888


Q ss_pred             ccceeeeeee
Q psy17460        174 VEQVDVIAEM  183 (216)
Q Consensus       174 ~~~g~~~~~~  183 (216)
                      | +|.+++..
T Consensus       190 p-gG~li~~~  198 (265)
T 2i62_A          190 P-GGFLVMVD  198 (265)
T ss_dssp             E-EEEEEEEE
T ss_pred             C-CcEEEEEe
Confidence            8 88887754

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.25  E-value=6.1e-11  Score=98.28  Aligned_cols=80  Identities=15%  Similarity=0.202  Sum_probs=67.2

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .++.+|||+|||+|..+..+++..+ .+++++|++ .+++.++.++...++. +++++.+|+  .+.+..   +.||+|+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~---~~~D~v~  237 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSA--FEVDYG---NDYDLVL  237 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCT--TTSCCC---SCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccc--ccCCCC---CCCcEEE
Confidence            4678999999999999999888743 699999999 9999999999888876 699999999  665443   4599999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      +...++..
T Consensus       238 ~~~~l~~~  245 (335)
T 2r3s_A          238 LPNFLHHF  245 (335)
T ss_dssp             EESCGGGS
T ss_pred             EcchhccC
Confidence            97776644

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.25  E-value=4.6e-11  Score=94.78  Aligned_cols=73  Identities=14%  Similarity=0.041  Sum_probs=57.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc----CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccc---ccccccCc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL----GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL---DSSVFKQK  120 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~----~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~~  120 (216)
                      ++.+|||+|||+|..+..+++.    ++ .+|+|+|+++.+++.|+. .   . ++++++.+|+  .+.   +.. ...+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~---~-~~v~~~~gD~--~~~~~l~~~-~~~~  152 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D---M-ENITLHQGDC--SDLTTFEHL-REMA  152 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G---C-TTEEEEECCS--SCSGGGGGG-SSSC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c---C-CceEEEECcc--hhHHHHHhh-ccCC
Confidence            5679999999999999998876    33 799999999999888762 1   1 3799999999  653   221 1137


Q ss_pred             ccEEEEcCC
Q psy17460        121 VDTVIMNPP  129 (216)
Q Consensus       121 ~D~vi~npp  129 (216)
                      ||+|+++..
T Consensus       153 fD~I~~d~~  161 (236)
T 2bm8_A          153 HPLIFIDNA  161 (236)
T ss_dssp             SSEEEEESS
T ss_pred             CCEEEECCc
Confidence            999999775

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.24  E-value=9.1e-11  Score=98.75  Aligned_cols=79  Identities=11%  Similarity=0.079  Sum_probs=67.1

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccc--ccccccCcccEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSL--DSSVFKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~--~~~~~~~~~D~v  124 (216)
                      .+.+|||+|||+|..+..+++..+ .+++++|+ +.+++.++.++...++. +++++.+|+  .+.  +..   ++||+|
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~p---~~~D~v  252 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANL--LDRDVPFP---TGFDAV  252 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCC--CSSSCCCC---CCCSEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccc--cccCCCCC---CCcCEE
Confidence            567999999999999999988754 69999999 99999999998877764 799999999  664  222   689999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      ++...++..
T Consensus       253 ~~~~vlh~~  261 (363)
T 3dp7_A          253 WMSQFLDCF  261 (363)
T ss_dssp             EEESCSTTS
T ss_pred             EEechhhhC
Confidence            998877755

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.23  E-value=1.6e-10  Score=92.87  Aligned_cols=106  Identities=17%  Similarity=0.147  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS  111 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  111 (216)
                      +.+.+...+...+. .++.+|||+|||+|.++..++... ..+|+|+|+++.+++.++.+..     ++.++.+|+  .+
T Consensus        70 ~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~d~--~~  141 (269)
T 1p91_A           70 LRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-----QVTFCVASS--HR  141 (269)
T ss_dssp             HHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-----TSEEEECCT--TS
T ss_pred             HHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC-----CcEEEEcch--hh
Confidence            44445555544322 367899999999999999988873 3599999999999999988752     689999999  66


Q ss_pred             cccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEE
Q psy17460        112 LDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYS  154 (216)
Q Consensus       112 ~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~  154 (216)
                      .+...  ++||+|+++.+..      ..+.+.+++++++.++.
T Consensus       142 ~~~~~--~~fD~v~~~~~~~------~l~~~~~~L~pgG~l~~  176 (269)
T 1p91_A          142 LPFSD--TSMDAIIRIYAPC------KAEELARVVKPGGWVIT  176 (269)
T ss_dssp             CSBCT--TCEEEEEEESCCC------CHHHHHHHEEEEEEEEE
T ss_pred             CCCCC--CceeEEEEeCChh------hHHHHHHhcCCCcEEEE
Confidence            65443  6899999865421      23445555555555333

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.23  E-value=1e-10  Score=98.53  Aligned_cols=81  Identities=12%  Similarity=-0.024  Sum_probs=68.2

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...++.+|||+|||+|.++..++...+ .+++++|+ +.+++.++.++...++. +++++.+|+  .+.. .   ..||+
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~-~---~~~D~  251 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF--FKPL-P---VTADV  251 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT--TSCC-S---CCEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCC--CCcC-C---CCCCE
Confidence            334678999999999999999988764 69999999 99999999999888876 799999999  6522 2   35999


Q ss_pred             EEEcCCCCCC
Q psy17460        124 VIMNPPFGTR  133 (216)
Q Consensus       124 vi~npp~~~~  133 (216)
                      |+++..+++.
T Consensus       252 v~~~~vl~~~  261 (374)
T 1qzz_A          252 VLLSFVLLNW  261 (374)
T ss_dssp             EEEESCGGGS
T ss_pred             EEEeccccCC
Confidence            9999888755

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.22  E-value=9.6e-11  Score=91.39  Aligned_cols=76  Identities=22%  Similarity=0.244  Sum_probs=60.8

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|..+..++..+ .+++|+|+++.+++.++.+.       .+++.+|+.+...+..  .++||+|+++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~--~~~fD~v~~~  100 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYE--EEQFDCVIFG  100 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSC--TTCEEEEEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCC--CCccCEEEEC
Confidence            467899999999999999988885 69999999999999988764       2688999932223332  2689999998


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      ..+++.
T Consensus       101 ~~l~~~  106 (230)
T 3cc8_A          101 DVLEHL  106 (230)
T ss_dssp             SCGGGS
T ss_pred             Chhhhc
Confidence            877654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.22  E-value=4.6e-11  Score=97.21  Aligned_cols=111  Identities=9%  Similarity=0.009  Sum_probs=74.3

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh-----------------CC-------------
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF-----------------EI-------------   97 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-----------------~~-------------   97 (216)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|++++...                 +.             
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            367899999999999665555543459999999999999998865421                 10             


Q ss_pred             CceEEEEecccccc-cccc---cccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcC
Q psy17460         98 TNCDAILFEINEKS-LDSS---VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKN  173 (216)
Q Consensus        98 ~~v~~~~~d~~~~~-~~~~---~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~  173 (216)
                      ..++++.+|+  .+ .++.   ...++||+|+++..+++....                     ..+...+++.+.++|+
T Consensus       150 ~~~~~~~~D~--~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~---------------------~~~~~~~l~~~~r~Lk  206 (289)
T 2g72_A          150 RVKRVLPIDV--HQPQPLGAGSPAPLPADALVSAFCLEAVSPD---------------------LASFQRALDHITTLLR  206 (289)
T ss_dssp             HEEEEECCCT--TSSSTTCSSCSSCSSEEEEEEESCHHHHCSS---------------------HHHHHHHHHHHHTTEE
T ss_pred             hhceEEeccc--CCCCCccccccCCCCCCEEEehhhhhhhcCC---------------------HHHHHHHHHHHHHhcC
Confidence            0156788899  55 3321   122569999998765421000                     0124456677788888


Q ss_pred             ccceeeeee
Q psy17460        174 VEQVDVIAE  182 (216)
Q Consensus       174 ~~~g~~~~~  182 (216)
                      | +|.+++.
T Consensus       207 p-GG~l~~~  214 (289)
T 2g72_A          207 P-GGHLLLI  214 (289)
T ss_dssp             E-EEEEEEE
T ss_pred             C-CCEEEEE
Confidence            8 8887774

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.22  E-value=3.9e-10  Score=91.42  Aligned_cols=104  Identities=9%  Similarity=-0.015  Sum_probs=73.0

Q ss_pred             CCCEEEEecCCC---CHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc---------c
Q psy17460         49 DGKTVLDLGCGS---GILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS---------S  115 (216)
Q Consensus        49 ~~~~vlD~g~Gt---G~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---------~  115 (216)
                      ...+|||+|||+   |.++..+....+ .+|+++|+|+.+++.++.++...  .+++++.+|+  .+...         .
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~--~~v~~~~~D~--~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD--PNTAVFTADV--RDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC--TTEEEEECCT--TCHHHHHHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC--CCeEEEEeeC--CCchhhhccchhhcc
Confidence            447999999999   988766666544 69999999999999999988543  2799999999  54210         0


Q ss_pred             cccCcccEEEEcCCCCCCCCCC---CHHHHHHHhhcCCceEEEe
Q psy17460        116 VFKQKVDTVIMNPPFGTRNCGI---DLAFVQYAADISKVVYSLH  156 (216)
Q Consensus       116 ~~~~~~D~vi~npp~~~~~~~~---~~~~~~~~l~~~~~ly~~~  156 (216)
                      ....+||+|+++..+|+.....   ..+.+.+++++++.+....
T Consensus       153 ~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~  196 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTS  196 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            0114799999999888773322   2334445555666544333

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.22  E-value=1.8e-10  Score=96.68  Aligned_cols=83  Identities=16%  Similarity=0.113  Sum_probs=68.6

Q ss_pred             hcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcc
Q psy17460         44 NYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKV  121 (216)
Q Consensus        44 ~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~  121 (216)
                      .++..++.+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++++...++. +++++.+|+  .+.+..    .+
T Consensus       185 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~----~~  257 (359)
T 1x19_A          185 EAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI--YKESYP----EA  257 (359)
T ss_dssp             HCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCT--TTSCCC----CC
T ss_pred             hcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcc--ccCCCC----CC
Confidence            33445678999999999999999988754 69999999 99999999999888776 599999999  666543    34


Q ss_pred             cEEEEcCCCCCC
Q psy17460        122 DTVIMNPPFGTR  133 (216)
Q Consensus       122 D~vi~npp~~~~  133 (216)
                      |+|++...++..
T Consensus       258 D~v~~~~vlh~~  269 (359)
T 1x19_A          258 DAVLFCRILYSA  269 (359)
T ss_dssp             SEEEEESCGGGS
T ss_pred             CEEEEechhccC
Confidence            999998877644

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.22  E-value=1.5e-10  Score=88.96  Aligned_cols=72  Identities=18%  Similarity=0.165  Sum_probs=54.5

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC---CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc----------
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG---ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS----------  114 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~---~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~----------  114 (216)
                      .++.+|||+|||+|.++..+++..   ..+|+|+|+++..           ..++++++.+|+  .+...          
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~--~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEI--GKDNMNNIKNINYID   87 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCT--TTTSSCCC-------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccc--cchhhhhhccccccc
Confidence            467899999999999999988763   3699999999831           123789999999  55430          


Q ss_pred             -------------ccccCcccEEEEcCCCCC
Q psy17460        115 -------------SVFKQKVDTVIMNPPFGT  132 (216)
Q Consensus       115 -------------~~~~~~~D~vi~npp~~~  132 (216)
                                   ....++||+|+++++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~  118 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPC  118 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCC
Confidence                         011258999999987664

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.22  E-value=3e-10  Score=95.79  Aligned_cols=86  Identities=13%  Similarity=0.106  Sum_probs=69.8

Q ss_pred             HHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccccc
Q psy17460         41 IQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFK  118 (216)
Q Consensus        41 ~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~  118 (216)
                      +...++..++.+|||+|||+|..+..+++..+ .+++++|+ +.+++.++.++...++. +++++.+|+  .+ +..   
T Consensus       194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~--~~-~~p---  266 (369)
T 3gwz_A          194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDF--FE-TIP---  266 (369)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT--TT-CCC---
T ss_pred             HHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCC--CC-CCC---
Confidence            33333445678999999999999999988755 69999999 99999999999887764 799999999  63 222   


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      ..||+|++...++..
T Consensus       267 ~~~D~v~~~~vlh~~  281 (369)
T 3gwz_A          267 DGADVYLIKHVLHDW  281 (369)
T ss_dssp             SSCSEEEEESCGGGS
T ss_pred             CCceEEEhhhhhccC
Confidence            379999998877655

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.21  E-value=9.2e-11  Score=98.06  Aligned_cols=80  Identities=13%  Similarity=0.074  Sum_probs=67.8

Q ss_pred             CC-CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccc--cccccCccc
Q psy17460         48 ID-GKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLD--SSVFKQKVD  122 (216)
Q Consensus        48 ~~-~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~--~~~~~~~~D  122 (216)
                      .+ +.+|||+|||+|.++..+++..+ .+++++|+ +.+++.++.++...++. +++++.+|+  .+.+  ..   +.||
T Consensus       177 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~~---~~~D  250 (352)
T 3mcz_A          177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNL--LDARNFEG---GAAD  250 (352)
T ss_dssp             GTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCT--TCGGGGTT---CCEE
T ss_pred             cCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCc--ccCcccCC---CCcc
Confidence            34 78999999999999999888755 79999999 88999999999887775 699999999  6654  32   5799


Q ss_pred             EEEEcCCCCCC
Q psy17460        123 TVIMNPPFGTR  133 (216)
Q Consensus       123 ~vi~npp~~~~  133 (216)
                      +|++...+|+.
T Consensus       251 ~v~~~~vlh~~  261 (352)
T 3mcz_A          251 VVMLNDCLHYF  261 (352)
T ss_dssp             EEEEESCGGGS
T ss_pred             EEEEecccccC
Confidence            99998877755

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.20  E-value=9.5e-11  Score=94.46  Aligned_cols=74  Identities=19%  Similarity=0.043  Sum_probs=62.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh----CCCceEEEEecccccccccccccCcccE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF----EITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ..+++|||+|||+|.++..+++.+ .+|+++|+|+.+++.|++++...    .-++++++.+|+  .++.     ++||+
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~--~~~~-----~~fD~  142 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL--DLDI-----KKYDL  142 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGG--GSCC-----CCEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechH--HHHH-----hhCCE
Confidence            356899999999999999988886 89999999999999999887431    123799999999  7765     58999


Q ss_pred             EEEcCC
Q psy17460        124 VIMNPP  129 (216)
Q Consensus       124 vi~npp  129 (216)
                      |+++.+
T Consensus       143 Ii~d~~  148 (262)
T 2cmg_A          143 IFCLQE  148 (262)
T ss_dssp             EEESSC
T ss_pred             EEECCC
Confidence            999864

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.20  E-value=2.8e-11  Score=107.62  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=69.1

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      .+.+|||+|||+|.++..+++.|+ .|+|||+++.+++.|+..+...+..++++..+++  .++......++||+|+|.-
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~fD~v~~~e  142 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRI--EEVIAALEEGEFDLAIGLS  142 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCH--HHHHHHCCTTSCSEEEEES
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCH--HHHhhhccCCCccEEEECc
Confidence            467999999999999999999987 8999999999999999999877744899999999  5553222226899999987


Q ss_pred             CCCCC
Q psy17460        129 PFGTR  133 (216)
Q Consensus       129 p~~~~  133 (216)
                      .+++.
T Consensus       143 ~~ehv  147 (569)
T 4azs_A          143 VFHHI  147 (569)
T ss_dssp             CHHHH
T ss_pred             chhcC
Confidence            77664

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.20  E-value=9.1e-11  Score=87.58  Aligned_cols=71  Identities=20%  Similarity=0.154  Sum_probs=57.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc--------cccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD--------SSVF  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~~  117 (216)
                      .++.+|||+|||+|.++..+++. ++ .+++|+|+++ +++.          .+++++.+|+  .+.+        ..  
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~--~~~~~~~~~~~~~~--   85 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDF--RDELVMKALLERVG--   85 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCT--TSHHHHHHHHHHHT--
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEccc--ccchhhhhhhccCC--
Confidence            46789999999999999998887 55 7999999998 6432          3789999999  6653        22  


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      .++||+|++|+|++..
T Consensus        86 ~~~~D~i~~~~~~~~~  101 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMS  101 (180)
T ss_dssp             TCCEEEEEECCCCCCC
T ss_pred             CCceeEEEECCCcccc
Confidence            2689999999998765

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.19  E-value=1.6e-10  Score=90.25  Aligned_cols=69  Identities=12%  Similarity=0.114  Sum_probs=57.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|.++..++..     +|+|+++.+++.++.+       +++++.+|+  .+.+...  ++||+|+++.
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------~~~~~~~d~--~~~~~~~--~~fD~v~~~~  110 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------GVFVLKGTA--ENLPLKD--ESFDFALMVT  110 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------TCEEEECBT--TBCCSCT--TCEEEEEEES
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------CCEEEEccc--ccCCCCC--CCeeEEEEcc
Confidence            3779999999999999877654     9999999999999887       578999999  6665432  6899999988


Q ss_pred             CCCCC
Q psy17460        129 PFGTR  133 (216)
Q Consensus       129 p~~~~  133 (216)
                      .+++.
T Consensus       111 ~l~~~  115 (219)
T 1vlm_A          111 TICFV  115 (219)
T ss_dssp             CGGGS
T ss_pred             hHhhc
Confidence            76654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.19  E-value=2.1e-10  Score=95.22  Aligned_cols=79  Identities=10%  Similarity=0.003  Sum_probs=66.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .++.+|||+|||+|..+..+++..+ .+++++|+ +.+++.++.++...++. +++++.+|+  .+ +..   ..||+|+
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~-~~p---~~~D~v~  240 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSF--FD-PLP---AGAGGYV  240 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT--TS-CCC---CSCSEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCC--CC-CCC---CCCcEEE
Confidence            3467999999999999999888754 68999999 99999999999887764 799999999  63 222   3899999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      +...++..
T Consensus       241 ~~~vlh~~  248 (332)
T 3i53_A          241 LSAVLHDW  248 (332)
T ss_dssp             EESCGGGS
T ss_pred             EehhhccC
Confidence            98877655

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=99.19  E-value=2.4e-11  Score=108.43  Aligned_cols=106  Identities=17%  Similarity=0.210  Sum_probs=73.0

Q ss_pred             cccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc---CC--CEEEEEeCChHHHHHHH
Q psy17460         15 FNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL---GA--DFCFALECDKEILDIFI   89 (216)
Q Consensus        15 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~---~~--~~v~~iD~~~~~~~~~~   89 (216)
                      +-|+.+++++.+|.  ..+.+.+.+.....-...++.+|+|+|||+|.+...+++.   +.  .+|++||.|+ +...++
T Consensus       325 evFEkD~vKy~~Ye--~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~  401 (637)
T 4gqb_A          325 EVFEKDPIKYSQYQ--QAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTL  401 (637)
T ss_dssp             HHHTTCHHHHHHHH--HHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHH
T ss_pred             hhhcCChhhHHHHH--HHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHH
Confidence            44556666666655  3344444444333223345578999999999995554443   32  2789999998 566778


Q ss_pred             HhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460         90 DNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        90 ~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      +....+++. +|+++.||.++.++|     +++|+||+-.
T Consensus       402 ~~v~~N~~~dkVtVI~gd~eev~LP-----EKVDIIVSEw  436 (637)
T 4gqb_A          402 ENWQFEEWGSQVTVVSSDMREWVAP-----EKADIIVSEL  436 (637)
T ss_dssp             HHHHHHTTGGGEEEEESCTTTCCCS-----SCEEEEECCC
T ss_pred             HHHHhccCCCeEEEEeCcceeccCC-----cccCEEEEEc
Confidence            888888887 699999999555544     7999999854

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.18  E-value=1.9e-10  Score=96.37  Aligned_cols=81  Identities=16%  Similarity=0.106  Sum_probs=67.8

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...++.+|||+|||+|.++..+++.++ .+++++|+ +.+++.+++++...++. +++++.+|+  .+.. .   ..||+
T Consensus       180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~-~---~~~D~  252 (360)
T 1tw3_A          180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDF--FEPL-P---RKADA  252 (360)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCT--TSCC-S---SCEEE
T ss_pred             CCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCC--CCCC-C---CCccE
Confidence            334678999999999999999888765 68999999 99999999999888876 799999999  6522 2   35999


Q ss_pred             EEEcCCCCCC
Q psy17460        124 VIMNPPFGTR  133 (216)
Q Consensus       124 vi~npp~~~~  133 (216)
                      |+++..++..
T Consensus       253 v~~~~vl~~~  262 (360)
T 1tw3_A          253 IILSFVLLNW  262 (360)
T ss_dssp             EEEESCGGGS
T ss_pred             EEEcccccCC
Confidence            9998887654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.17  E-value=3.5e-10  Score=89.33  Aligned_cols=78  Identities=14%  Similarity=0.175  Sum_probs=68.3

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ..+.+|||+|||+|.+++.++  +...++|+|+|+.+++.++.++..++. +..+..+|.  ...+..   +++|+|+++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~--~~~~~~---~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDV--LCAPPA---EAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCT--TTSCCC---CBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeec--ccCCCC---CCcchHHHH
Confidence            357799999999999999888  557999999999999999999988886 899999999  776655   699999998


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      -.++..
T Consensus       176 k~lh~L  181 (253)
T 3frh_A          176 KLLPLL  181 (253)
T ss_dssp             SCHHHH
T ss_pred             HHHHHh
Confidence            777665

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.17  E-value=6.2e-11  Score=101.37  Aligned_cols=115  Identities=10%  Similarity=0.044  Sum_probs=79.8

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc--eEEEEeccccccc
Q psy17460         35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN--CDAILFEINEKSL  112 (216)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~--v~~~~~d~~~~~~  112 (216)
                      ..++..+...+...++.+|||+|||+|.++..++..+. +|+|+|+|+++++.|+.+    +.+.  ..+..+++  ..+
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~--~~l  165 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATA--DDV  165 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHH--HHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhH--hhc
Confidence            34445555544555788999999999999999998876 999999999999999876    3321  12333444  344


Q ss_pred             ccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        113 DSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       113 ~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      +...  ++||+|+++..+++..                         +...+++.+.++|+| +|.++++..
T Consensus       166 ~~~~--~~fD~I~~~~vl~h~~-------------------------d~~~~l~~~~r~Lkp-gG~l~i~~~  209 (416)
T 4e2x_A          166 RRTE--GPANVIYAANTLCHIP-------------------------YVQSVLEGVDALLAP-DGVFVFEDP  209 (416)
T ss_dssp             HHHH--CCEEEEEEESCGGGCT-------------------------THHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred             ccCC--CCEEEEEECChHHhcC-------------------------CHHHHHHHHHHHcCC-CeEEEEEeC
Confidence            4332  7999999988776551                         234566666777777 777776543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.16  E-value=1.3e-10  Score=91.95  Aligned_cols=99  Identities=20%  Similarity=0.219  Sum_probs=61.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccccc-CcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFK-QKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~D~vi~  126 (216)
                      .++.+|||+|||||.++..+++.++.+|+|+|++++|++.++++.....    .....++  ......... ..||.+.+
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~d~~~~  109 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVV----VMEQFNF--RNAVLADFEQGRPSFTSI  109 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEE----EECSCCG--GGCCGGGCCSCCCSEEEE
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccc----ccccceE--EEeCHhHcCcCCCCEEEE
Confidence            4678999999999999999999876799999999999999877644211    1111122  111101000 13566667


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCceEE
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKVVYS  154 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~ly~  154 (216)
                      +..|...  ....+-+.+++++++.++.
T Consensus       110 D~v~~~l--~~~l~~i~rvLkpgG~lv~  135 (232)
T 3opn_A          110 DVSFISL--DLILPPLYEILEKNGEVAA  135 (232)
T ss_dssp             CCSSSCG--GGTHHHHHHHSCTTCEEEE
T ss_pred             EEEhhhH--HHHHHHHHHhccCCCEEEE
Confidence            6666543  2234445555555555333

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.15  E-value=2.2e-10  Score=95.04  Aligned_cols=76  Identities=17%  Similarity=0.191  Sum_probs=64.1

Q ss_pred             CEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460         51 KTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      .+|||+|||+|..+..+++..+ .+++++|+ +.+++.++.++...++. +++++.+|+  .+ +..   +.||+|++..
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~-~~~---~~~D~v~~~~  241 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDM--LQ-EVP---SNGDIYLLSR  241 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCT--TT-CCC---SSCSEEEEES
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCC--CC-CCC---CCCCEEEEch
Confidence            8999999999999999888754 69999999 99999999998776553 799999999  65 322   5799999988


Q ss_pred             CCCCC
Q psy17460        129 PFGTR  133 (216)
Q Consensus       129 p~~~~  133 (216)
                      .++..
T Consensus       242 vl~~~  246 (334)
T 2ip2_A          242 IIGDL  246 (334)
T ss_dssp             CGGGC
T ss_pred             hccCC
Confidence            87644

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.14  E-value=2.8e-10  Score=92.83  Aligned_cols=102  Identities=14%  Similarity=0.021  Sum_probs=66.2

Q ss_pred             CCCCEEEEecCCCCHhHHHH----hHcCC-CEE--EEEeCChHHHHHHHHhhhHh-CCCceE--EEEeccccccccc---
Q psy17460         48 IDGKTVLDLGCGSGILTFGS----ILLGA-DFC--FALECDKEILDIFIDNKNEF-EITNCD--AILFEINEKSLDS---  114 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~----~~~~~-~~v--~~iD~~~~~~~~~~~~~~~~-~~~~v~--~~~~d~~~~~~~~---  114 (216)
                      .++.+|||+|||+|.++..+    +..++ ..|  +|+|+|++|++.++.++... +++++.  +..+++  .+++.   
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS--SEYQSRML  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCH--HHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecch--hhhhhhhc
Confidence            35679999999999876432    22222 444  99999999999999987653 444444  455666  43321   


Q ss_pred             -ccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460        115 -SVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKV  151 (216)
Q Consensus       115 -~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~  151 (216)
                       ....++||+|++...+++. +....++.+.+++++++.
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~  167 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAK  167 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEE
T ss_pred             cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcE
Confidence             0112789999999888776 333334444555555555

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.13  E-value=2.4e-10  Score=92.64  Aligned_cols=112  Identities=13%  Similarity=0.092  Sum_probs=79.6

Q ss_pred             CCCEEEEecCCCCH----hHHHHhHc-C----CCEEEEEeCChHHHHHHHHhhhH-----------------------hC
Q psy17460         49 DGKTVLDLGCGSGI----LTFGSILL-G----ADFCFALECDKEILDIFIDNKNE-----------------------FE   96 (216)
Q Consensus        49 ~~~~vlD~g~GtG~----~~~~~~~~-~----~~~v~~iD~~~~~~~~~~~~~~~-----------------------~~   96 (216)
                      ++.+|||+|||||.    +++.+++. +    ..+|+|+|+|+.+++.|+.++..                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45699999999998    55555554 3    24899999999999999997520                       01


Q ss_pred             ---C-----CceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHH
Q psy17460         97 ---I-----TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKI  168 (216)
Q Consensus        97 ---~-----~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~  168 (216)
                         +     .+|.|..+|+  .+.++.. .++||+|+|..-+++.                       .......+++.+
T Consensus       185 ~~~v~~~lr~~V~F~~~dl--~~~~~~~-~~~fDlI~crnvliyf-----------------------~~~~~~~vl~~~  238 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNL--LEKQYNV-PGPFDAIFCRNVMIYF-----------------------DKTTQEDILRRF  238 (274)
T ss_dssp             EEEECHHHHTTEEEEECCT--TCSSCCC-CCCEEEEEECSSGGGS-----------------------CHHHHHHHHHHH
T ss_pred             ceeechhhcccCeEEeccc--CCCCCCc-CCCeeEEEECCchHhC-----------------------CHHHHHHHHHHH
Confidence               0     1589999999  7643321 2689999995433322                       222346788888


Q ss_pred             HHhcCccceeeeeeeecCC
Q psy17460        169 QAFKNVEQVDVIAEMKYDL  187 (216)
Q Consensus       169 ~~~l~~~~g~~~~~~~~~~  187 (216)
                      .+.|+| +|.+++.+....
T Consensus       239 ~~~L~p-gG~L~lg~sE~~  256 (274)
T 1af7_A          239 VPLLKP-DGLLFAGHSENF  256 (274)
T ss_dssp             GGGEEE-EEEEEECTTCCC
T ss_pred             HHHhCC-CcEEEEEecccc
Confidence            999999 999999666544

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.11  E-value=5.8e-10  Score=85.17  Aligned_cols=107  Identities=11%  Similarity=0.139  Sum_probs=69.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-CC---------CEEEEEeCChHHHHHHHHhhhHhCCCceEEE-Eecccccccccc-
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-GA---------DFCFALECDKEILDIFIDNKNEFEITNCDAI-LFEINEKSLDSS-  115 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~~---------~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~-~~d~~~~~~~~~-  115 (216)
                      .++.+|||+|||+|.++..+++. +.         .+|+|+|+++..           ...+++++ .+|+  .+.... 
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~--~~~~~~~   87 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADV--TDPRTSQ   87 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCT--TSHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccC--CCHHHHH
Confidence            46889999999999999998887 43         689999999831           22368899 9998  543211 


Q ss_pred             -----cccCcccEEEEcCCCCCCCCC-CCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        116 -----VFKQKVDTVIMNPPFGTRNCG-IDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       116 -----~~~~~~D~vi~npp~~~~~~~-~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                           ...++||+|+++++++..... .+.   .....            ....+++.+.++|+| +|.+++..
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~---~~~~~------------~~~~~l~~~~~~Lkp-gG~lv~~~  145 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDH---DRLIS------------LCLTLLSVTPDILQP-GGTFLCKT  145 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHH---HHHHH------------HHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCH---HHHHH------------HHHHHHHHHHHHhcC-CCEEEEEe
Confidence                 112589999999876542100 000   00000            013456667777778 77777754

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.09  E-value=5.2e-10  Score=89.24  Aligned_cols=79  Identities=13%  Similarity=0.156  Sum_probs=69.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ...+|||+|||+|.+++.++... ...++++|+|+.+++.++.|+..+++ +..+...|.  ..-+..   +.+|+++++
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-~~~~~v~D~--~~~~p~---~~~DvaL~l  205 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-PHRTNVADL--LEDRLD---EPADVTLLL  205 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-CEEEEECCT--TTSCCC---SCCSEEEET
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeee--cccCCC---CCcchHHHH
Confidence            46799999999999999888774 48999999999999999999999998 689999999  666544   799999998


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      -.++..
T Consensus       206 kti~~L  211 (281)
T 3lcv_B          206 KTLPCL  211 (281)
T ss_dssp             TCHHHH
T ss_pred             HHHHHh
Confidence            887765

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.05  E-value=2.9e-10  Score=93.54  Aligned_cols=74  Identities=14%  Similarity=0.112  Sum_probs=54.8

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeC----ChHHHHHHHHhhhHhCCCceEEEEe-cccccccccccccCccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALEC----DKEILDIFIDNKNEFEITNCDAILF-EINEKSLDSSVFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~----~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~D  122 (216)
                      .++.+|||+|||+|.++..+++.  .+|+|+|+    ++.+++.+  .....+.++++++.+ |+  ..++.    ++||
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~--~~l~~----~~fD  150 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDV--FFIPP----ERCD  150 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCT--TTSCC----CCCS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEecccc--ccCCc----CCCC
Confidence            46789999999999999999888  47999999    55443211  111112237999999 99  76653    6899


Q ss_pred             EEEEcCCCC
Q psy17460        123 TVIMNPPFG  131 (216)
Q Consensus       123 ~vi~npp~~  131 (216)
                      +|+||.++.
T Consensus       151 ~V~sd~~~~  159 (305)
T 2p41_A          151 TLLCDIGES  159 (305)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCccc
Confidence            999998764

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.03  E-value=8e-10  Score=85.77  Aligned_cols=83  Identities=12%  Similarity=0.087  Sum_probs=58.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|.++..++    .+++|+|+++.               +++++.+|+  .+.+...  ++||+|+++
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~--~~~~~~~--~~fD~v~~~  122 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDM--AQVPLED--ESVDVAVFC  122 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCT--TSCSCCT--TCEEEEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEecc--ccCCCCC--CCEeEEEEe
Confidence            366799999999999987663    48999999986               467899999  6655432  689999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCceE
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKVVY  153 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~ly  153 (216)
                      ..++..+.....+.+.+++++++.++
T Consensus       123 ~~l~~~~~~~~l~~~~~~L~~gG~l~  148 (215)
T 2zfu_A          123 LSLMGTNIRDFLEEANRVLKPGGLLK  148 (215)
T ss_dssp             SCCCSSCHHHHHHHHHHHEEEEEEEE
T ss_pred             hhccccCHHHHHHHHHHhCCCCeEEE
Confidence            88864322222333444455555433

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.00  E-value=2.4e-10  Score=92.76  Aligned_cols=74  Identities=16%  Similarity=0.132  Sum_probs=54.7

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhh-hHhCCC-ceEEE--EecccccccccccccCccc
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNK-NEFEIT-NCDAI--LFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~-~~~~~~-~v~~~--~~d~~~~~~~~~~~~~~~D  122 (216)
                      ..++.+|||+|||+|.++..+++.  .+|+|+|+++ ++..++.+. ...... ++.++  .+|+  .+++ .   ++||
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~--~~l~-~---~~fD  150 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDV--TKME-P---FQAD  150 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCG--GGCC-C---CCCS
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcH--hhCC-C---CCcC
Confidence            346889999999999999998888  4899999998 433222211 101111 68999  9999  6665 2   6999


Q ss_pred             EEEEcCC
Q psy17460        123 TVIMNPP  129 (216)
Q Consensus       123 ~vi~npp  129 (216)
                      +|+|+.+
T Consensus       151 ~Vvsd~~  157 (276)
T 2wa2_A          151 TVLCDIG  157 (276)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.99  E-value=2.1e-10  Score=92.54  Aligned_cols=73  Identities=15%  Similarity=0.166  Sum_probs=54.2

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhh---hHhCCCceEEE--EecccccccccccccCcc
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNK---NEFEITNCDAI--LFEINEKSLDSSVFKQKV  121 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~---~~~~~~~v~~~--~~d~~~~~~~~~~~~~~~  121 (216)
                      ..++.+|||+|||+|.++..+++.  .+|+|+|+++ ++..++...   ...+. ++.++  .+|+  .+++ .   ++|
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~-~v~~~~~~~D~--~~l~-~---~~f  141 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGW-NIVKFKSRVDI--HTLP-V---ERT  141 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTG-GGEEEECSCCT--TTSC-C---CCC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCC-CeEEEecccCH--hHCC-C---CCC
Confidence            346889999999999999998887  5899999998 432221111   01111 68999  9999  7665 2   699


Q ss_pred             cEEEEcCC
Q psy17460        122 DTVIMNPP  129 (216)
Q Consensus       122 D~vi~npp  129 (216)
                      |+|+||.+
T Consensus       142 D~V~sd~~  149 (265)
T 2oxt_A          142 DVIMCDVG  149 (265)
T ss_dssp             SEEEECCC
T ss_pred             cEEEEeCc
Confidence            99999987

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.95  E-value=2.7e-09  Score=90.25  Aligned_cols=96  Identities=11%  Similarity=-0.015  Sum_probs=65.9

Q ss_pred             CCCEEEEecCC------CCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc----c
Q psy17460         49 DGKTVLDLGCG------SGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS----V  116 (216)
Q Consensus        49 ~~~~vlD~g~G------tG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~----~  116 (216)
                      ++.+|||+|||      +|..++.+++. . ..+|+|+|+++.+.         ...++++++++|+  .+.++.    .
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa--~dlpf~~~l~~  284 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQ--NDAEFLDRIAR  284 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCT--TCHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecc--cccchhhhhhc
Confidence            56899999999      77777666654 2 37999999999872         1123899999999  665443    0


Q ss_pred             ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        117 FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      ..++||+|+++.... .                         .+....++.+.++|+| +|.++++
T Consensus       285 ~d~sFDlVisdgsH~-~-------------------------~d~~~aL~el~rvLKP-GGvlVi~  323 (419)
T 3sso_A          285 RYGPFDIVIDDGSHI-N-------------------------AHVRTSFAALFPHVRP-GGLYVIE  323 (419)
T ss_dssp             HHCCEEEEEECSCCC-H-------------------------HHHHHHHHHHGGGEEE-EEEEEEE
T ss_pred             ccCCccEEEECCccc-c-------------------------hhHHHHHHHHHHhcCC-CeEEEEE
Confidence            127999999975421 1                         0123445566777788 7777764

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.94  E-value=3.5e-09  Score=88.48  Aligned_cols=81  Identities=11%  Similarity=0.045  Sum_probs=59.0

Q ss_pred             hhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCc
Q psy17460         43 NNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQK  120 (216)
Q Consensus        43 ~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~  120 (216)
                      ..++..++.+|||+|||+|..+..+++..+ .+++++|+ +.++.  +.+....+.. +++++.+|+  .+..     .+
T Consensus       178 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~--~~~~-----p~  247 (348)
T 3lst_A          178 RAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDF--LREV-----PH  247 (348)
T ss_dssp             HHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCT--TTCC-----CC
T ss_pred             HhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCC--CCCC-----CC
Confidence            333445678999999999999999888755 68999999 45554  3333333333 699999999  6321     28


Q ss_pred             ccEEEEcCCCCCC
Q psy17460        121 VDTVIMNPPFGTR  133 (216)
Q Consensus       121 ~D~vi~npp~~~~  133 (216)
                      ||+|++...+|+.
T Consensus       248 ~D~v~~~~vlh~~  260 (348)
T 3lst_A          248 ADVHVLKRILHNW  260 (348)
T ss_dssp             CSEEEEESCGGGS
T ss_pred             CcEEEEehhccCC
Confidence            9999998877654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.94  E-value=1e-08  Score=85.85  Aligned_cols=80  Identities=15%  Similarity=-0.039  Sum_probs=64.7

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ..+..+|+|+|||+|.++..+++..+ .+++..|. |.+++.++.++...+.++|+++.+|+  .+.+.    ..+|+++
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~--~~~~~----~~~D~~~  249 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDF--FKDPL----PEADLYI  249 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCT--TTSCC----CCCSEEE
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCcc--ccCCC----CCceEEE
Confidence            34567999999999999999998866 78889998 88999999988766655899999999  76543    4689999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      +.--+|..
T Consensus       250 ~~~vlh~~  257 (353)
T 4a6d_A          250 LARVLHDW  257 (353)
T ss_dssp             EESSGGGS
T ss_pred             eeeecccC
Confidence            97776654

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.91  E-value=2.9e-08  Score=80.82  Aligned_cols=94  Identities=13%  Similarity=0.050  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHh--C---CCceEEEEe
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEF--E---ITNCDAILF  105 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~--~---~~~v~~~~~  105 (216)
                      .+.+.++...+..  ....++||-+|.|.|..+.++++..+ .+|+.+|||+.+++.+++.+...  +   -++++++.+
T Consensus        68 ~YhE~l~h~~l~~--~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~  145 (294)
T 3o4f_A           68 IYHEMMTHVPLLA--HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVID  145 (294)
T ss_dssp             HHHHHHHHHHHHH--SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred             HHHHHHHHHHHhh--CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEec
Confidence            3455555544432  23678999999999999999998854 79999999999999999987432  1   237999999


Q ss_pred             cccccccccccccCcccEEEEcCCC
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      |+  ..+... ..++||+|+.|.+-
T Consensus       146 Dg--~~~l~~-~~~~yDvIi~D~~d  167 (294)
T 3o4f_A          146 DG--VNFVNQ-TSQTFDVIISDCTD  167 (294)
T ss_dssp             CT--TTTTSC-SSCCEEEEEESCCC
T ss_pred             hH--HHHHhh-ccccCCEEEEeCCC
Confidence            99  887643 34789999998753

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.90  E-value=9.1e-09  Score=86.70  Aligned_cols=72  Identities=8%  Similarity=0.042  Sum_probs=57.0

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|..+..+++..+ .+++++|+ +.+++.++.+      .+++++.+|+  .+ +..   .. |+|++
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~--~~-~~p---~~-D~v~~  267 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDM--FD-GVP---KG-DAIFI  267 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCT--TT-CCC---CC-SEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCC--CC-CCC---CC-CEEEE
Confidence            3467999999999999999988765 68999999 8888766532      3799999999  65 322   23 99999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      ...+|..
T Consensus       268 ~~vlh~~  274 (368)
T 3reo_A          268 KWICHDW  274 (368)
T ss_dssp             ESCGGGB
T ss_pred             echhhcC
Confidence            8877754

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.90  E-value=8.6e-09  Score=86.85  Aligned_cols=72  Identities=13%  Similarity=0.023  Sum_probs=58.2

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|..+..+++.++ .+++++|+ +.+++.++..      ++++++.+|+  .+ +.    ..||+|++
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~--~~-~~----~~~D~v~~  273 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL------SGIEHVGGDM--FA-SV----PQGDAMIL  273 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCT--TT-CC----CCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc------CCCEEEeCCc--cc-CC----CCCCEEEE
Confidence            4567999999999999999998865 68999999 8888776542      3799999999  66 32    23999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      +..+++.
T Consensus       274 ~~~lh~~  280 (372)
T 1fp1_D          274 KAVCHNW  280 (372)
T ss_dssp             ESSGGGS
T ss_pred             ecccccC
Confidence            8877755

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.89  E-value=4.1e-09  Score=88.38  Aligned_cols=94  Identities=15%  Similarity=0.097  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCC------CceEEEEe
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEI------TNCDAILF  105 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~------~~v~~~~~  105 (216)
                      .+..+...++   ...+|.+|||++||.|.-+..++..+. ..|+++|+++.-+..++.|++..+.      .++.+...
T Consensus       135 ~aS~l~~~~L---~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~  211 (359)
T 4fzv_A          135 AASLLPVLAL---GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSW  211 (359)
T ss_dssp             GGGHHHHHHH---CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECC
T ss_pred             HHHHHHHHHh---CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeC
Confidence            3444444444   346899999999999999999888766 6899999999999999999988764      26889999


Q ss_pred             cccccccccccccCcccEEEEcCCCCC
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNPPFGT  132 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~npp~~~  132 (216)
                      |+  ..+... ..+.||.|++|+|...
T Consensus       212 D~--~~~~~~-~~~~fD~VLlDaPCSg  235 (359)
T 4fzv_A          212 DG--RKWGEL-EGDTYDRVLVDVPCTT  235 (359)
T ss_dssp             CG--GGHHHH-STTCEEEEEEECCCCC
T ss_pred             ch--hhcchh-ccccCCEEEECCccCC
Confidence            99  665422 1268999999999864

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.87  E-value=6.2e-09  Score=84.88  Aligned_cols=67  Identities=15%  Similarity=0.188  Sum_probs=49.0

Q ss_pred             CCCCCCEEEEecCCC------CHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEE-EEecccccccccccc
Q psy17460         46 NDIDGKTVLDLGCGS------GILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDA-ILFEINEKSLDSSVF  117 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt------G~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~~  117 (216)
                      ...++.+|||+|||+      |. ...+...++ .+|+|+|+++.             ++++++ +++|+  .+.+..  
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~--~~~~~~--  121 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDC--ATVHTA--  121 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCG--GGCCCS--
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECcc--ccCCcc--
Confidence            445788999999954      66 333333343 69999999997             126888 99999  766543  


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                       ++||+|++|++..
T Consensus       122 -~~fD~Vvsn~~~~  134 (290)
T 2xyq_A          122 -NKWDLIISDMYDP  134 (290)
T ss_dssp             -SCEEEEEECCCCC
T ss_pred             -CcccEEEEcCCcc
Confidence             6899999997543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.86  E-value=3.3e-08  Score=79.71  Aligned_cols=107  Identities=9%  Similarity=-0.023  Sum_probs=69.0

Q ss_pred             CCCEEEEecCCCC--HhHHHHhH-cCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--cc--ccCc
Q psy17460         49 DGKTVLDLGCGSG--ILTFGSIL-LGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--SV--FKQK  120 (216)
Q Consensus        49 ~~~~vlD~g~GtG--~~~~~~~~-~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~--~~~~  120 (216)
                      ...+|||+|||++  .....+++ ..+ .+|+++|.|+.|+..|+.++......+++++.+|+  .+...  ..  ..+.
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~--~~~~~~l~~~~~~~~  155 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADM--LDPASILDAPELRDT  155 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCT--TCHHHHHTCHHHHTT
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecc--cChhhhhcccccccc
Confidence            3468999999973  34444443 333 79999999999999999988654333799999999  55421  00  0134


Q ss_pred             cc-----EEEEcCCCCCCCCCCC-HHHH---HHHhhcCCceEEEee
Q psy17460        121 VD-----TVIMNPPFGTRNCGID-LAFV---QYAADISKVVYSLHK  157 (216)
Q Consensus       121 ~D-----~vi~npp~~~~~~~~~-~~~~---~~~l~~~~~ly~~~~  157 (216)
                      ||     .|++|.-+|+.....+ ...+   ..++.+++.+...+.
T Consensus       156 ~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~  201 (277)
T 3giw_A          156 LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG  201 (277)
T ss_dssp             CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred             cCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence            55     6889999998833332 2333   444555555443333

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.85  E-value=1.9e-08  Score=84.60  Aligned_cols=72  Identities=11%  Similarity=0.022  Sum_probs=56.9

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++.+|||+|||+|..+..+++..+ .+++++|+ +.+++.++..      .+++++.+|+  .+ +..   .. |+|++
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~--~~-~~p---~~-D~v~~  265 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------PGVTHVGGDM--FK-EVP---SG-DTILM  265 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCT--TT-CCC---CC-SEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------CCeEEEeCCc--CC-CCC---CC-CEEEe
Confidence            4567999999999999999988755 68999999 8887766542      3799999999  65 332   23 99999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      .-.+|..
T Consensus       266 ~~vlh~~  272 (364)
T 3p9c_A          266 KWILHDW  272 (364)
T ss_dssp             ESCGGGS
T ss_pred             hHHhccC
Confidence            8777654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.78  E-value=5.5e-09  Score=84.26  Aligned_cols=112  Identities=8%  Similarity=-0.040  Sum_probs=77.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D~vi~  126 (216)
                      .+..+||+.+|||.+++++.+.+ .+++.+|.++..++..++|+...  .+++++.+|+  ......  ...++||+||+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~--~~~L~~l~~~~~~fdLVfi  165 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDG--VSKLNALLPPPEKRGLIFI  165 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCH--HHHHHHHCSCTTSCEEEEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcH--HHHHHHhcCCCCCccEEEE
Confidence            55679999999999999999855 79999999999999999999763  3799999998  553321  12257999999


Q ss_pred             cCCCCCC-CCCCCHHHHHHHhhcCCc--eEEEeeCcchHHHH
Q psy17460        127 NPPFGTR-NCGIDLAFVQYAADISKV--VYSLHKTSTRESIL  165 (216)
Q Consensus       127 npp~~~~-~~~~~~~~~~~~l~~~~~--ly~~~~~~~~~~~~  165 (216)
                      ||||... ......+.+.........  +..+++..+....-
T Consensus       166 DPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~  207 (283)
T 2oo3_A          166 DPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTE  207 (283)
T ss_dssp             CCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHH
Confidence            9999843 111112233333333222  55556655544433

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.77  E-value=2.8e-07  Score=71.11  Aligned_cols=78  Identities=14%  Similarity=0.154  Sum_probs=60.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC--C-ceEEEEeccccccc-------------
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI--T-NCDAILFEINEKSL-------------  112 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~--~-~v~~~~~d~~~~~~-------------  112 (216)
                      +.++|||+||  |..++.+++...++|+++|.|++..+.++.++...++  . +++++.+|+  .+.             
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda--~~~~~wg~p~~~~~~~  105 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDI--GPTGDWGHPVSDAKWR  105 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCC--SSBCGGGCBSSSTTGG
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCc--hhhhcccccccchhhh
Confidence            4679999998  5677777764236999999999999999999999886  4 899999998  432             


Q ss_pred             --cc-------ccccCcccEEEEcCCC
Q psy17460        113 --DS-------SVFKQKVDTVIMNPPF  130 (216)
Q Consensus       113 --~~-------~~~~~~~D~vi~npp~  130 (216)
                        +.       ....++||+||+|..+
T Consensus       106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k  132 (202)
T 3cvo_A          106 SYPDYPLAVWRTEGFRHPDVVLVDGRF  132 (202)
T ss_dssp             GTTHHHHGGGGCTTCCCCSEEEECSSS
T ss_pred             hHHHHhhhhhccccCCCCCEEEEeCCC
Confidence              10       0012689999998854

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.73  E-value=2.8e-08  Score=80.11  Aligned_cols=78  Identities=13%  Similarity=0.102  Sum_probs=63.5

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--c-cccCcccEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--S-VFKQKVDTV  124 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~-~~~~~~D~v  124 (216)
                      .++..++|.+||.|..+..+++. ..+|+|+|.|+.+++.++. +..   .+++++.+|+  .++..  . ...+++|.|
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f--~~l~~~L~~~g~~~vDgI   93 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNF--RHLKRHLAALGVERVDGI   93 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCG--GGHHHHHHHTTCSCEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCc--chHHHHHHHcCCCCcCEE
Confidence            47889999999999999999988 4599999999999999998 654   3899999999  55432  1 111579999


Q ss_pred             EEcCCCCC
Q psy17460        125 IMNPPFGT  132 (216)
Q Consensus       125 i~npp~~~  132 (216)
                      ++|+.+..
T Consensus        94 L~DLGvSS  101 (285)
T 1wg8_A           94 LADLGVSS  101 (285)
T ss_dssp             EEECSCCH
T ss_pred             EeCCcccc
Confidence            99877654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.73  E-value=1.6e-08  Score=90.54  Aligned_cols=79  Identities=9%  Similarity=-0.037  Sum_probs=56.1

Q ss_pred             CCEEEEecCCCCHhHHHHhHc----C----------CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccc
Q psy17460         50 GKTVLDLGCGSGILTFGSILL----G----------ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDS  114 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~----~----------~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~  114 (216)
                      +++|||+|||+|.++..++..    +          +.+|++||.|+.++..++.... +++. .|+++.+|.++.+.+.
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            568999999999997443222    2          2499999999988866665554 6665 5999999995444421


Q ss_pred             -ccccCcccEEEEcCC
Q psy17460        115 -SVFKQKVDTVIMNPP  129 (216)
Q Consensus       115 -~~~~~~~D~vi~npp  129 (216)
                       ....+++|+||+-..
T Consensus       489 ~~~~~ekVDIIVSElm  504 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELL  504 (745)
T ss_dssp             HHTTCCCCSEEEECCC
T ss_pred             ccCCCCcccEEEEecc
Confidence             001279999998654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.69  E-value=2.8e-08  Score=83.00  Aligned_cols=92  Identities=12%  Similarity=0.060  Sum_probs=69.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|..+..+++..+ .+++++|+ +.+++.++..      ++++++.+|+  .+ +.    ..||+|++.
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~--~~-~~----p~~D~v~~~  253 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------NNLTYVGGDM--FT-SI----PNADAVLLK  253 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------TTEEEEECCT--TT-CC----CCCSEEEEE
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------CCcEEEeccc--cC-CC----CCccEEEee
Confidence            567999999999999999888754 68999999 9998876642      2699999999  65 32    249999999


Q ss_pred             CCCCCCC-CC--CCHHHHHHHhhc---CCceEE
Q psy17460        128 PPFGTRN-CG--IDLAFVQYAADI---SKVVYS  154 (216)
Q Consensus       128 pp~~~~~-~~--~~~~~~~~~l~~---~~~ly~  154 (216)
                      ..+++.. ..  .-.+-+.+++++   ++.+++
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i  286 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTI  286 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            8888662 22  234455677777   666333

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.66  E-value=3.5e-08  Score=74.10  Aligned_cols=88  Identities=16%  Similarity=0.046  Sum_probs=61.5

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-cccCcccEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-VFKQKVDTV  124 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~D~v  124 (216)
                      +..+|.+|||+|||+               +++|+++.|++.|+++...    +++++.+|+  .+++.. ...++||+|
T Consensus         9 g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~--~~~~~~~~~~~~fD~V   67 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN----EGRVSVENI--KQLLQSAHKESSFDII   67 (176)
T ss_dssp             TCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEG--GGGGGGCCCSSCEEEE
T ss_pred             CCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc----CcEEEEech--hcCccccCCCCCEeEE
Confidence            345789999999996               2399999999999988653    589999999  665541 012789999


Q ss_pred             EEcCCCCCC--CCCCCHHHHHHHhhcCCceEE
Q psy17460        125 IMNPPFGTR--NCGIDLAFVQYAADISKVVYS  154 (216)
Q Consensus       125 i~npp~~~~--~~~~~~~~~~~~l~~~~~ly~  154 (216)
                      +++-.+++.  +.....+-+.+++++++.++.
T Consensus        68 ~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~   99 (176)
T 2ld4_A           68 LSGLVPGSTTLHSAEILAEIARILRPGGCLFL   99 (176)
T ss_dssp             EECCSTTCCCCCCHHHHHHHHHHEEEEEEEEE
T ss_pred             EECChhhhcccCHHHHHHHHHHHCCCCEEEEE
Confidence            998877765  222234444455555555443

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=98.65  E-value=7.9e-08  Score=80.31  Aligned_cols=92  Identities=16%  Similarity=0.051  Sum_probs=72.7

Q ss_pred             cCCCcccCcc-ccCCHHHHHHHHHHHHhhc--CCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhh
Q psy17460         17 FSNPKVHLEQ-YHTPPHLAATILHTIQNNY--NDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNK   92 (216)
Q Consensus        17 ~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~--~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~   92 (216)
                      ...++..+|| |-....+.+.++..+...-  +..++..|||+|.|.|.++..++.. .+.+|+++|+|+.++...+...
T Consensus        23 ~~~~kk~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           23 ISKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             TCSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             ccCCCCCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence            3457888998 7788899999998886320  0113589999999999999999976 3468999999999999888776


Q ss_pred             hHhCCCceEEEEecccccccc
Q psy17460         93 NEFEITNCDAILFEINEKSLD  113 (216)
Q Consensus        93 ~~~~~~~v~~~~~d~~~~~~~  113 (216)
                       ..  .+++++.+|+  ..+.
T Consensus       103 -~~--~~l~ii~~D~--l~~~  118 (353)
T 1i4w_A          103 -EG--SPLQILKRDP--YDWS  118 (353)
T ss_dssp             -TT--SSCEEECSCT--TCHH
T ss_pred             -cC--CCEEEEECCc--cchh
Confidence             22  3899999999  7653

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.63  E-value=8e-07  Score=64.50  Aligned_cols=87  Identities=11%  Similarity=0.006  Sum_probs=63.9

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCC-HhHHHHhH-cCCCEEEEEeCChHHHHHHHHhhhHhCCCceE
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSG-ILTFGSIL-LGADFCFALECDKEILDIFIDNKNEFEITNCD  101 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG-~~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~  101 (216)
                      .+-.+....+.+.++..+....  ..+.+|||+|||.| ..+..++. .|. .|+++|+++.+++               
T Consensus        12 ~~~~~~~~~m~e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~---------------   73 (153)
T 2k4m_A           12 SGLVPRGSHMWNDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG---------------   73 (153)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT---------------
T ss_pred             CCcccchhhHHHHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc---------------
Confidence            3445555567888888877653  24569999999999 59999987 665 8999999984443               


Q ss_pred             EEEecccccccccccccCcccEE-EEcCCCC
Q psy17460        102 AILFEINEKSLDSSVFKQKVDTV-IMNPPFG  131 (216)
Q Consensus       102 ~~~~d~~~~~~~~~~~~~~~D~v-i~npp~~  131 (216)
                      ++.+|+  ++..... -+.||+| -.|||-.
T Consensus        74 ~v~dDi--F~P~~~~-Y~~~DLIYsirPP~E  101 (153)
T 2k4m_A           74 IVRDDI--TSPRMEI-YRGAALIYSIRPPAE  101 (153)
T ss_dssp             EECCCS--SSCCHHH-HTTEEEEEEESCCTT
T ss_pred             eEEccC--CCCcccc-cCCcCEEEEcCCCHH
Confidence            899999  7744321 1489999 6788753

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.60  E-value=7.1e-08  Score=80.75  Aligned_cols=92  Identities=14%  Similarity=0.044  Sum_probs=68.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|||+|||+|.++..+++..+ .+++++|+ +.+++.++.      .++++++.+|+  .+ +.    ..||+|+++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~--~~-~~----~~~D~v~~~  258 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDM--FK-SI----PSADAVLLK  258 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCT--TT-CC----CCCSEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCcc--CC-CC----CCceEEEEc
Confidence            567999999999999999988765 68999999 788876553      23699999999  66 32    259999999


Q ss_pred             CCCCCCCC-C--CCHHHHHHHhhc---CCceEE
Q psy17460        128 PPFGTRNC-G--IDLAFVQYAADI---SKVVYS  154 (216)
Q Consensus       128 pp~~~~~~-~--~~~~~~~~~l~~---~~~ly~  154 (216)
                      ..+|.... .  .-++-+.+++++   ++.+++
T Consensus       259 ~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i  291 (358)
T 1zg3_A          259 WVLHDWNDEQSLKILKNSKEAISHKGKDGKVII  291 (358)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEE
T ss_pred             ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            98886622 1  234445566777   666443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.56  E-value=3.4e-07  Score=74.83  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE   96 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~   96 (216)
                      |..+.+.++....     .++..|||+|||+|+.+++++..|. +++|+|+++.+++.|+.++....
T Consensus       221 p~~l~~~~i~~~~-----~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          221 PLELAERLVRMFS-----FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             CHHHHHHHHHHHC-----CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHhC-----CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHhc
Confidence            3456555555443     3788999999999999999999886 89999999999999999987653

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.47  E-value=4.4e-07  Score=72.71  Aligned_cols=100  Identities=13%  Similarity=0.038  Sum_probs=60.0

Q ss_pred             cCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceE
Q psy17460         23 HLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCD  101 (216)
Q Consensus        23 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~  101 (216)
                      +.+.|...  -+..+...... ....++.+|||+|||+|.++..++.. +...+.|+|+..++...... ....+. ++.
T Consensus        51 ~~~~YrSR--aA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~~g~-~ii  125 (277)
T 3evf_A           51 DTGVAVSR--GTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQSLGW-NII  125 (277)
T ss_dssp             SSCBCSST--HHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCBTTG-GGE
T ss_pred             cCCCcccc--HHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCcCCC-CeE
Confidence            34556655  33445555554 23456779999999999999988776 44678888887543100000 011122 445


Q ss_pred             EEEecccccccccccccCcccEEEEcCCCC
Q psy17460        102 AILFEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       102 ~~~~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      .+.++++...++    .++||+|+||....
T Consensus       126 ~~~~~~dv~~l~----~~~~DlVlsD~apn  151 (277)
T 3evf_A          126 TFKDKTDIHRLE----PVKCDTLLCDIGES  151 (277)
T ss_dssp             EEECSCCTTTSC----CCCCSEEEECCCCC
T ss_pred             EEeccceehhcC----CCCccEEEecCccC
Confidence            566665223332    26899999997654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.43  E-value=6.5e-07  Score=71.74  Aligned_cols=62  Identities=24%  Similarity=0.226  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI   97 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~   97 (216)
                      |..+.+.++....     .+|..|||++||+|+.+.++.+.|. +++|+|+++.+++.++.++..+++
T Consensus       198 p~~l~~~~i~~~~-----~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          198 PRDLIERIIRASS-----NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CHHHHHHHHHHHC-----CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHhC-----CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhccC
Confidence            3556666655543     3788999999999999999999886 899999999999999999986553

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.43  E-value=3.9e-07  Score=76.44  Aligned_cols=79  Identities=19%  Similarity=0.185  Sum_probs=63.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh-----CC---CceEEEEecccccccccc--ccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF-----EI---TNCDAILFEINEKSLDSS--VFK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-----~~---~~v~~~~~d~~~~~~~~~--~~~  118 (216)
                      ++++||-+|.|.|..+.+++++...+|+.+|||+.+++.|++.+...     ..   ++++++.+|+  ..+...  ...
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da--~~fl~~~~~~~  282 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDC--IPVLKRYAKEG  282 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCH--HHHHHHHHHHT
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHH--HHHHHhhhhcc
Confidence            56899999999999999999886689999999999999999976421     11   1589999999  776532  122


Q ss_pred             CcccEEEEcCC
Q psy17460        119 QKVDTVIMNPP  129 (216)
Q Consensus       119 ~~~D~vi~npp  129 (216)
                      ++||+|+.|.+
T Consensus       283 ~~yDvIIvDl~  293 (381)
T 3c6k_A          283 REFDYVINDLT  293 (381)
T ss_dssp             CCEEEEEEECC
T ss_pred             CceeEEEECCC
Confidence            68999999864

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.33  E-value=1.5e-06  Score=69.64  Aligned_cols=78  Identities=18%  Similarity=0.072  Sum_probs=53.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-------CC------CEEEEEeCCh---HHH-----------HHHHHhhhHh------
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-------GA------DFCFALECDK---EIL-----------DIFIDNKNEF------   95 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-------~~------~~v~~iD~~~---~~~-----------~~~~~~~~~~------   95 (216)
                      ++.+|||+|+|+|..++.+++.       .+      .+++++|..|   +.+           ..++.++...      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4569999999999988775542       33      4899999887   333           3555555431      


Q ss_pred             --------CCCceEEEEeccccccccccccc---CcccEEEEcC
Q psy17460         96 --------EITNCDAILFEINEKSLDSSVFK---QKVDTVIMNP  128 (216)
Q Consensus        96 --------~~~~v~~~~~d~~~~~~~~~~~~---~~~D~vi~np  128 (216)
                              +..+++++.||+  .+.......   ..||+|+.|+
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa--~~~l~~~~~~~~~~~D~iflD~  181 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDI--NELISQLDDSLNQKVDAWFLDG  181 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCH--HHHGGGSCGGGTTCEEEEEECS
T ss_pred             hhheeccCCceEEEEEECcH--HHHHhhcccccCCeEEEEEECC
Confidence                    112688999999  664332211   2799999986

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.27  E-value=8.8e-07  Score=73.89  Aligned_cols=76  Identities=18%  Similarity=0.235  Sum_probs=58.5

Q ss_pred             CEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccccc-CcccEEEEc
Q psy17460         51 KTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFK-QKVDTVIMN  127 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~D~vi~n  127 (216)
                      .+|+|++||.|.+++.+...|  ...|+++|+++.+++..+.|..     +..++.+|+  .++...... ..+|+|+++
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di--~~~~~~~~~~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTI--EGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCG--GGCCHHHHHHHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCH--HHccHhHcCcCCcCEEEEc
Confidence            479999999999999999888  4579999999999999999875     345788999  665432111 269999999


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      ||+...
T Consensus        76 pPCq~f   81 (343)
T 1g55_A           76 PPCQPF   81 (343)
T ss_dssp             CC----
T ss_pred             CCCcch
Confidence            996554

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=98.25  E-value=2.5e-06  Score=72.01  Aligned_cols=76  Identities=24%  Similarity=0.308  Sum_probs=62.0

Q ss_pred             CEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccCcccEE
Q psy17460         51 KTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQKVDTV  124 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~~~D~v  124 (216)
                      .+++|++||.|.+++.+.+.|...++++|+++.+++..+.|..     +..++.+|+  .++....      ....+|+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI--~~~~~~~~~~~~~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP-----RSLHVQEDV--SLLNAEIIKGFFKNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT-----TSEEECCCG--GGCCHHHHHHHHCSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC-----CCceEecCh--hhcCHHHHHhhcccCCCeeEE
Confidence            4799999999999999999888778899999999988888764     567889999  6553321      12589999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      +..||....
T Consensus        76 ~ggpPCQ~f   84 (376)
T 3g7u_A           76 IGGPPCQGF   84 (376)
T ss_dssp             EECCCCCTT
T ss_pred             EecCCCCCc
Confidence            999997665

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.20  E-value=7.7e-06  Score=66.23  Aligned_cols=78  Identities=6%  Similarity=-0.046  Sum_probs=59.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc----C--CCEEEEEeCChH--------------------------HHHHHHHhhhHhC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL----G--ADFCFALECDKE--------------------------ILDIFIDNKNEFE   96 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~----~--~~~v~~iD~~~~--------------------------~~~~~~~~~~~~~   96 (216)
                      .+..|||+|+..|..++.++..    +  ..+|+++|..+.                          .++.+++|+...+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            4568999999999988776543    1  368999996421                          4677899999988


Q ss_pred             C--CceEEEEecccccccccccccCcccEEEEcC
Q psy17460         97 I--TNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        97 ~--~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      +  ++++++.||+  .+.......++||+|+.|.
T Consensus       186 l~~~~I~li~Gda--~etL~~~~~~~~d~vfIDa  217 (282)
T 2wk1_A          186 LLDEQVRFLPGWF--KDTLPTAPIDTLAVLRMDG  217 (282)
T ss_dssp             CCSTTEEEEESCH--HHHSTTCCCCCEEEEEECC
T ss_pred             CCcCceEEEEeCH--HHHHhhCCCCCEEEEEEcC
Confidence            7  4799999999  6544333336899999986

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=98.13  E-value=7.8e-06  Score=67.67  Aligned_cols=75  Identities=20%  Similarity=0.193  Sum_probs=61.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      .+.+++|++||.|.+++.+.+.|...++++|+++.+++..+.|....    .   .+|+  .++..... ..+|+|+++|
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~----~---~~Di--~~~~~~~~-~~~D~l~~gp   79 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK----P---EGDI--TQVNEKTI-PDHDILCAGF   79 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC----C---BSCG--GGSCGGGS-CCCSEEEEEC
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC----C---cCCH--HHcCHhhC-CCCCEEEECC
Confidence            45789999999999999999998878999999999999988887431    1   6888  66543322 4699999999


Q ss_pred             CCCCC
Q psy17460        129 PFGTR  133 (216)
Q Consensus       129 p~~~~  133 (216)
                      |+...
T Consensus        80 PCQ~f   84 (327)
T 2c7p_A           80 PCQAF   84 (327)
T ss_dssp             CCTTT
T ss_pred             CCCCc
Confidence            99886

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.12  E-value=7.3e-06  Score=67.56  Aligned_cols=88  Identities=14%  Similarity=0.080  Sum_probs=64.2

Q ss_pred             HHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--
Q psy17460         39 HTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--  114 (216)
Q Consensus        39 ~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  114 (216)
                      ..+...+...+|..++|..||.|.-+..+++. ++ ++|+|+|.|+.+++.++ ++  . ..+++++.+++  .++..  
T Consensus        47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~-~~Rv~lv~~nF--~~l~~~L  120 (347)
T 3tka_A           47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D-DPRFSIIHGPF--SALGEYV  120 (347)
T ss_dssp             HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C-CTTEEEEESCG--GGHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c-CCcEEEEeCCH--HHHHHHH
Confidence            33333444568889999999999999998876 44 79999999999999984 44  1 23799999999  55432  


Q ss_pred             cc--ccCcccEEEEcCCCCC
Q psy17460        115 SV--FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       115 ~~--~~~~~D~vi~npp~~~  132 (216)
                      ..  ..+++|.|+.|..+..
T Consensus       121 ~~~g~~~~vDgILfDLGVSS  140 (347)
T 3tka_A          121 AERDLIGKIDGILLDLGVSS  140 (347)
T ss_dssp             HHTTCTTCEEEEEEECSCCH
T ss_pred             HhcCCCCcccEEEECCccCH
Confidence            11  1136999998754443

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.12  E-value=7.1e-06  Score=68.60  Aligned_cols=72  Identities=8%  Similarity=0.117  Sum_probs=55.8

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .+|.+|+|+||++|..+..+++++. +|+|||+.+ +-..    +  ...++|+++.+|+  .......  .+||.|+||
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~~----l--~~~~~V~~~~~d~--~~~~~~~--~~~D~vvsD  277 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQS----L--MDTGQVTWLREDG--FKFRPTR--SNISWMVCD  277 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCHH----H--HTTTCEEEECSCT--TTCCCCS--SCEEEEEEC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cChh----h--ccCCCeEEEeCcc--ccccCCC--CCcCEEEEc
Confidence            4799999999999999999999875 999999764 1111    1  1223799999999  7765543  689999999


Q ss_pred             CCCC
Q psy17460        128 PPFG  131 (216)
Q Consensus       128 pp~~  131 (216)
                      ....
T Consensus       278 m~~~  281 (375)
T 4auk_A          278 MVEK  281 (375)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            8653

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.11  E-value=8.6e-06  Score=65.34  Aligned_cols=98  Identities=14%  Similarity=0.051  Sum_probs=58.9

Q ss_pred             ccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEE
Q psy17460         25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAI  103 (216)
Q Consensus        25 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~  103 (216)
                      +.|...  -+..+.+..... ...++.+|||+|||.|.++..++.. +...|+|+|+..++...+... ...+. ++...
T Consensus        69 g~YrSR--AAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~-~ii~~  143 (282)
T 3gcz_A           69 GIAVSR--GSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGW-NLIRF  143 (282)
T ss_dssp             SBCSST--HHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTG-GGEEE
T ss_pred             CCEecH--HHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCC-ceEEe
Confidence            556644  334455555543 4457789999999999999987754 557899999986532111110 11122 33333


Q ss_pred             EecccccccccccccCcccEEEEcCCCC
Q psy17460        104 LFEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       104 ~~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      ..+++...++    ..++|+|+||....
T Consensus       144 ~~~~dv~~l~----~~~~DvVLSDmApn  167 (282)
T 3gcz_A          144 KDKTDVFNME----VIPGDTLLCDIGES  167 (282)
T ss_dssp             ECSCCGGGSC----CCCCSEEEECCCCC
T ss_pred             eCCcchhhcC----CCCcCEEEecCccC
Confidence            3333113333    26899999997765

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=98.09  E-value=1.3e-06  Score=72.24  Aligned_cols=75  Identities=13%  Similarity=0.036  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE  109 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  109 (216)
                      |..+.+.++....     .+|..|||++||+|+.+.++.+.|. +.+|+|+++..++.++.++...+. ....+.+|+  
T Consensus       238 p~~l~~~~i~~~~-----~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~-~~~~~~~~~--  308 (323)
T 1boo_A          238 PAKLPEFFIRMLT-----EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNI-SEEKITDIY--  308 (323)
T ss_dssp             CTHHHHHHHHHHC-----CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCS-CHHHHHHHH--
T ss_pred             CHHHHHHHHHHhC-----CCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhccc-chHHHHHHH--
Confidence            4567766665543     3788999999999999999999886 899999999999999999987665 455666666  


Q ss_pred             cccc
Q psy17460        110 KSLD  113 (216)
Q Consensus       110 ~~~~  113 (216)
                      .+++
T Consensus       309 ~~i~  312 (323)
T 1boo_A          309 NRIL  312 (323)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.99  E-value=2e-05  Score=62.45  Aligned_cols=98  Identities=10%  Similarity=-0.030  Sum_probs=54.9

Q ss_pred             cccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhH--hCC
Q psy17460         21 KVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNE--FEI   97 (216)
Q Consensus        21 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~--~~~   97 (216)
                      ..+.+.|.....+  .+.+.-... -..++.+|+|+||+.|..+..+++.-. ..|.|.++..+. ..  .-+..  .+.
T Consensus        48 ~~~~g~yRSRAay--KL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~--~P~~~~~~Gv  121 (269)
T 2px2_A           48 NKVGGHPVSRGTA--KLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HE--EPMLMQSYGW  121 (269)
T ss_dssp             --CCSCCSSTHHH--HHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SC--CCCCCCSTTG
T ss_pred             CCcCCCcccHHHH--HHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-cc--CCCcccCCCc
Confidence            3445667766444  344444433 345788999999999999999888621 233444433221 00  00000  122


Q ss_pred             CceEEEEe-cccccccccccccCcccEEEEcCCC
Q psy17460         98 TNCDAILF-EINEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus        98 ~~v~~~~~-d~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      +-+.|..+ |+  .+...    .++|+|+||..-
T Consensus       122 ~~i~~~~G~Df--~~~~~----~~~DvVLSDMAP  149 (269)
T 2px2_A          122 NIVTMKSGVDV--FYKPS----EISDTLLCDIGE  149 (269)
T ss_dssp             GGEEEECSCCG--GGSCC----CCCSEEEECCCC
T ss_pred             eEEEeeccCCc--cCCCC----CCCCEEEeCCCC
Confidence            11355557 99  66432    589999999754

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.97  E-value=6.1e-05  Score=60.72  Aligned_cols=99  Identities=11%  Similarity=-0.022  Sum_probs=64.4

Q ss_pred             cccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCc
Q psy17460         21 KVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITN   99 (216)
Q Consensus        21 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~   99 (216)
                      ..+.+.|.+...+  .+.+..... ...++.+|+|+||++|.++..++.. +...|+|+|+...--+. -...+..+.+-
T Consensus        69 ~~~~g~y~SR~~~--KL~ei~~~~-~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w~l  144 (321)
T 3lkz_A           69 NVTGGHPVSRGTA--KLRWLVERR-FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGWNI  144 (321)
T ss_dssp             CCSSCCCSSTHHH--HHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTGGG
T ss_pred             cCcCCCccchHHH--HHHHHHHhc-CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCCcc
Confidence            3445677766433  344444442 3457779999999999999866655 56789999997631100 00011223324


Q ss_pred             eEEEEe-cccccccccccccCcccEEEEcCC
Q psy17460        100 CDAILF-EINEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus       100 v~~~~~-d~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      +.+..+ |+  ..++.    .++|+|+||.-
T Consensus       145 V~~~~~~Dv--~~l~~----~~~D~ivcDig  169 (321)
T 3lkz_A          145 VTMKSGVDV--FYRPS----ECCDTLLCDIG  169 (321)
T ss_dssp             EEEECSCCT--TSSCC----CCCSEEEECCC
T ss_pred             eEEEeccCH--hhCCC----CCCCEEEEECc
Confidence            888888 88  66654    57999999987

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.96  E-value=9.5e-06  Score=63.42  Aligned_cols=96  Identities=15%  Similarity=0.082  Sum_probs=64.7

Q ss_pred             ccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEE
Q psy17460         25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAI  103 (216)
Q Consensus        25 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~  103 (216)
                      +.|.+...+  .+.+..... ...++.+|+|+||++|..+..++.. ++.+|+|+|+...--+ --...+..|.+.++|.
T Consensus        57 g~yrSRa~~--KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe-~P~~~~s~gwn~v~fk  132 (267)
T 3p8z_A           57 HHAVSRGSA--KLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE-EPVPMSTYGWNIVKLM  132 (267)
T ss_dssp             SCCSSTHHH--HHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCCTTTTSEEEE
T ss_pred             CCccchHHH--HHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCcc-CcchhhhcCcCceEEE
Confidence            667765433  344444443 3457789999999999999866654 6689999998752210 0011234455579999


Q ss_pred             Ee-cccccccccccccCcccEEEEcCCC
Q psy17460        104 LF-EINEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus       104 ~~-d~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      .+ |+  ...+.    .++|+|+||.--
T Consensus       133 ~gvDv--~~~~~----~~~DtllcDIge  154 (267)
T 3p8z_A          133 SGKDV--FYLPP----EKCDTLLCDIGE  154 (267)
T ss_dssp             CSCCG--GGCCC----CCCSEEEECCCC
T ss_pred             eccce--eecCC----ccccEEEEecCC
Confidence            99 98  66554    589999998654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.88  E-value=1.8e-05  Score=64.00  Aligned_cols=131  Identities=15%  Similarity=0.066  Sum_probs=72.1

Q ss_pred             cCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceE
Q psy17460         23 HLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCD  101 (216)
Q Consensus        23 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~  101 (216)
                      +.+.|.....+  .+...... -...++.+|||+||++|.++..+++. +...|+|+|+..++...... ....+. ++.
T Consensus        58 ~~g~yrSRaa~--KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv  132 (300)
T 3eld_A           58 DVGISVSRGAA--KIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIV  132 (300)
T ss_dssp             SSCCCSSTTHH--HHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGE
T ss_pred             cCCCccchHHH--HHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceE
Confidence            34566655443  34333333 22347889999999999999998875 45789999997532100000 001111 332


Q ss_pred             EEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccc-eeee
Q psy17460        102 AILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQ-VDVI  180 (216)
Q Consensus       102 ~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~-g~~~  180 (216)
                      ....+++...+.    .+++|+|+||.... .  +.  ...+... .             ..++..+..||+| + |.++
T Consensus       133 ~~~~~~di~~l~----~~~~DlVlsD~APn-s--G~--~~~D~~r-s-------------~~LL~~A~~~Lkp-G~G~FV  188 (300)
T 3eld_A          133 KFKDKSNVFTMP----TEPSDTLLCDIGES-S--SN--PLVERDR-T-------------MKVLENFERWKHV-NTENFC  188 (300)
T ss_dssp             EEECSCCTTTSC----CCCCSEEEECCCCC-C--SS--HHHHHHH-H-------------HHHHHHHHHHCCT-TCCEEE
T ss_pred             EeecCceeeecC----CCCcCEEeecCcCC-C--CC--HHHHHHH-H-------------HHHHHHHHHHhcC-CCCcEE
Confidence            223222113332    26899999997654 2  11  1111110 0             1235667888888 8 8887


Q ss_pred             ee
Q psy17460        181 AE  182 (216)
Q Consensus       181 ~~  182 (216)
                      ..
T Consensus       189 ~K  190 (300)
T 3eld_A          189 VK  190 (300)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.87  E-value=3.6e-05  Score=63.44  Aligned_cols=62  Identities=19%  Similarity=0.243  Sum_probs=49.3

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCCh---HHHHHHHHhhhHhC
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDK---EILDIFIDNKNEFE   96 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~---~~~~~~~~~~~~~~   96 (216)
                      .|..+.+.++....     .+|..|||++||+|+.+.++.+.|. +.+|+|+++   ..++.++.++...+
T Consensus       227 kp~~l~~~~i~~~~-----~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          227 KPAAVIERLVRALS-----HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CCHHHHHHHHHHHS-----CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHhC-----CCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHcc
Confidence            35567777666553     3788999999999999999999886 899999999   99999999987654

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.84  E-value=5.4e-05  Score=61.67  Aligned_cols=79  Identities=16%  Similarity=0.053  Sum_probs=61.8

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCE--EEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccc--cCcccE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADF--CFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVF--KQKVDT  123 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~--v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~D~  123 (216)
                      ..+.+++|++||.|.+++.+.+.|...  |+++|+++.+++..+.|..     +..++.+|+  .++.....  ...+|+
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI--~~i~~~~i~~~~~~Dl   86 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDV--RSVTQKHIQEWGPFDL   86 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCG--GGCCHHHHHHTCCCSE
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----CCceeCCCh--HHccHHHhcccCCcCE
Confidence            345699999999999999988888644  7999999999888777753     346889999  66543321  136999


Q ss_pred             EEEcCCCCCC
Q psy17460        124 VIMNPPFGTR  133 (216)
Q Consensus       124 vi~npp~~~~  133 (216)
                      ++..||+...
T Consensus        87 l~ggpPCQ~f   96 (295)
T 2qrv_A           87 VIGGSPCNDL   96 (295)
T ss_dssp             EEECCCCGGG
T ss_pred             EEecCCCccc
Confidence            9999998765

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.69  E-value=0.00035  Score=56.40  Aligned_cols=114  Identities=7%  Similarity=0.016  Sum_probs=66.6

Q ss_pred             HHHHHHHh-hcCCCCCCEEEEecC------CCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         36 TILHTIQN-NYNDIDGKTVLDLGC------GSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        36 ~~~~~~~~-~~~~~~~~~vlD~g~------GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      ++...+.. .+...-+.+|||+||      -.|+  ..+.+.++  +.|+++|+.+-.           ...+ .+++||
T Consensus        95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~-----------sda~-~~IqGD  160 (344)
T 3r24_A           95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV-----------SDAD-STLIGD  160 (344)
T ss_dssp             HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB-----------CSSS-EEEESC
T ss_pred             HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccc-----------cCCC-eEEEcc
Confidence            34444432 223456899999997      4455  33444455  399999998711           1113 459999


Q ss_pred             ccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      +  ......   .+||+|++|..-........        ...+      ...-.+..+..+.++|++ +|.+++..
T Consensus       161 ~--~~~~~~---~k~DLVISDMAPNtTG~~D~--------d~~R------s~~L~ElALdfA~~~Lkp-GGsFvVKV  217 (344)
T 3r24_A          161 C--ATVHTA---NKWDLIISDMYDPRTKHVTK--------ENDS------KEGFFTYLCGFIKQKLAL-GGSIAVKI  217 (344)
T ss_dssp             G--GGEEES---SCEEEEEECCCCTTSCSSCS--------CCCC------CCTHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             c--cccccC---CCCCEEEecCCCCcCCcccc--------chhH------HHHHHHHHHHHHHHhCcC-CCEEEEEE
Confidence            8  554432   78999999875332200000        0000      011235566678889999 88888753

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.67  E-value=7.2e-05  Score=62.01  Aligned_cols=76  Identities=22%  Similarity=0.318  Sum_probs=60.0

Q ss_pred             CEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccc-cCcccEEEEc
Q psy17460         51 KTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVF-KQKVDTVIMN  127 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~~D~vi~n  127 (216)
                      -+++|++||.|.++..+.+.|.  .-|+++|+++.+++..+.|..     +..++.+|+  .++..... ...+|++++.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI--~~~~~~~~~~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNI--QQLTPQVIKKWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCG--GGCCHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceecccc--ccCCHHHhccCCCCEEEec
Confidence            3799999999999998888775  568899999999988888864     345778999  66543321 1369999999


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      ||....
T Consensus        77 pPCQ~f   82 (333)
T 4h0n_A           77 PPCQPF   82 (333)
T ss_dssp             CCCCCS
T ss_pred             CCCcch
Confidence            998765

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.65  E-value=0.00014  Score=59.94  Aligned_cols=73  Identities=29%  Similarity=0.368  Sum_probs=60.0

Q ss_pred             EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460         52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      +|+|++||.|.+++-+-+.|..-++++|+++.+++..+.|..      -+++.+|+  .++..... ..+|+++..||..
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI--~~i~~~~~-~~~D~l~ggpPCQ   72 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------AKLIKGDI--SKISSDEF-PKCDGIIGGPPSQ   72 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC------SEEEESCG--GGCCGGGS-CCCSEEECCCCGG
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------CCcccCCh--hhCCHhhC-CcccEEEecCCCC
Confidence            699999999999998888888778899999999988887753      36788999  66654322 5799999999987


Q ss_pred             CC
Q psy17460        132 TR  133 (216)
Q Consensus       132 ~~  133 (216)
                      ..
T Consensus        73 ~f   74 (331)
T 3ubt_Y           73 SW   74 (331)
T ss_dssp             GT
T ss_pred             Cc
Confidence            75

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.55  E-value=0.00011  Score=60.74  Aligned_cols=75  Identities=16%  Similarity=0.181  Sum_probs=57.9

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCC--CEE-EEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccccc-CcccEEE
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGA--DFC-FALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFK-QKVDTVI  125 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~--~~v-~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~D~vi  125 (216)
                      .-+++|++||.|.++..+...|.  ..+ +++|+++.+++..+.|...     . ++.+|+  .++...... ..+|+++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI--~~~~~~~i~~~~~Dil~   81 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNL--DSISIKQIESLNCNTWF   81 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCT--TTCCHHHHHHTCCCEEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCCh--hhcCHHHhccCCCCEEE
Confidence            45899999999999999888873  567 7999999999988888642     1 678899  665433211 3699999


Q ss_pred             EcCCCCC
Q psy17460        126 MNPPFGT  132 (216)
Q Consensus       126 ~npp~~~  132 (216)
                      +.||...
T Consensus        82 ggpPCQ~   88 (327)
T 3qv2_A           82 MSPPCQP   88 (327)
T ss_dssp             ECCCCTT
T ss_pred             ecCCccC
Confidence            9999553

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.39  E-value=0.00084  Score=56.54  Aligned_cols=79  Identities=15%  Similarity=-0.078  Sum_probs=48.9

Q ss_pred             CCEEEEecCCCCHhHHHHhHc-----------------CC-CEEEEEeCC-----------hHHHHHHHHhhhHhCC-Cc
Q psy17460         50 GKTVLDLGCGSGILTFGSILL-----------------GA-DFCFALECD-----------KEILDIFIDNKNEFEI-TN   99 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~-----------------~~-~~v~~iD~~-----------~~~~~~~~~~~~~~~~-~~   99 (216)
                      ..+|+|+||++|..++.+...                 .+ -+|+.-|+.           +...+.+++.   .+- .+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence            568999999999988765543                 12 478888876           3333332221   121 02


Q ss_pred             eEEEEecccc-cccccccccCcccEEEEcCCCCCC
Q psy17460        100 CDAILFEINE-KSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       100 v~~~~~d~~~-~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      --++.|.... ....+..  +++|+|+++-.+|+.
T Consensus       130 ~~f~~gvpgSFy~rlfp~--~S~d~v~Ss~aLHWl  162 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPE--ESMHFLHSCYCLHWL  162 (384)
T ss_dssp             SEEEEECCSCTTSCCSCT--TCEEEEEEESCTTBC
T ss_pred             ceEEEecchhhhhccCCC--CceEEEEecceeeec
Confidence            2344444410 3333333  799999999999998

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.33  E-value=0.0031  Score=52.93  Aligned_cols=80  Identities=15%  Similarity=0.048  Sum_probs=52.6

Q ss_pred             CCEEEEecCCCCHhHHHHh--------Hc----C---C-CEEEEEeCChHHHHHHHHhhhHhC-----------C--Cc-
Q psy17460         50 GKTVLDLGCGSGILTFGSI--------LL----G---A-DFCFALECDKEILDIFIDNKNEFE-----------I--TN-   99 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~--------~~----~---~-~~v~~iD~~~~~~~~~~~~~~~~~-----------~--~~-   99 (216)
                      +.+|+|+|||+|..++.++        ..    +   + -+|+.-|+-.+--+..-+.+....           .  .. 
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            4799999999999887652        11    1   2 578899987777655544443211           0  01 


Q ss_pred             -eEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460        100 -CDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       100 -v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                       +.-+.+.+  ....+..  ++||+|+++-.+|+.
T Consensus       133 f~~gvpgSF--y~rlfP~--~S~d~v~Ss~aLHWl  163 (374)
T 3b5i_A          133 FVAGVPGSF--YRRLFPA--RTIDFFHSAFSLHWL  163 (374)
T ss_dssp             EEEEEESCT--TSCCSCT--TCEEEEEEESCTTBC
T ss_pred             EEEecChhh--hcccCCC--cceEEEEecceeeee
Confidence             23455555  4443332  799999999999997

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=97.32  E-value=0.00026  Score=61.44  Aligned_cols=80  Identities=18%  Similarity=0.168  Sum_probs=60.7

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--------------
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--------------  115 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--------------  115 (216)
                      .-+++|++||.|.++..+...|..-|+++|+++.+++..+.|.....  +..++.+|+  .++...              
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p--~~~~~~~DI--~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDP--ATHHFNEDI--RDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCT--TTCEEESCT--HHHHCTTCTTSCHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCC--Ccceeccch--hhhhhccccccchhhHHhhh
Confidence            35899999999999998888887678999999999888887763211  456778998  554311              


Q ss_pred             -cccCcccEEEEcCCCCCC
Q psy17460        116 -VFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       116 -~~~~~~D~vi~npp~~~~  133 (216)
                       .....+|+++..||....
T Consensus       164 ~~~~~~~Dvl~gGpPCQ~F  182 (482)
T 3me5_A          164 RQHIPEHDVLLAGFPCQPF  182 (482)
T ss_dssp             HHHSCCCSEEEEECCCCCC
T ss_pred             hhcCCCCCEEEecCCCcch
Confidence             111468999999998765

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.09  E-value=0.00018  Score=60.10  Aligned_cols=80  Identities=9%  Similarity=-0.030  Sum_probs=56.8

Q ss_pred             CCEEEEecCCCCHhHHHHhHc----------------CC-CEEEEEeCChHHHHHHHHhhhHhCCC-c---eEEEEeccc
Q psy17460         50 GKTVLDLGCGSGILTFGSILL----------------GA-DFCFALECDKEILDIFIDNKNEFEIT-N---CDAILFEIN  108 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~----------------~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~---v~~~~~d~~  108 (216)
                      .-+|+|+||++|..++.+...                .+ -+|+.-|+..+..+.+-+.+...... +   +.-+.|.+ 
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF-  130 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF-  130 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS-
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh-
Confidence            458999999999887654433                22 58999999998888888776542110 2   33455555 


Q ss_pred             ccccccccccCcccEEEEcCCCCCC
Q psy17460        109 EKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       109 ~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                       ....+..  +++|+|+++-.+|+.
T Consensus       131 -y~rlfp~--~S~d~v~Ss~aLHWl  152 (359)
T 1m6e_X          131 -YGRLFPR--NTLHFIHSSYSLMWL  152 (359)
T ss_dssp             -SSCCSCT--TCBSCEEEESCTTBC
T ss_pred             -hhccCCC--CceEEEEehhhhhhc
Confidence             4444433  799999999999997

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.06  E-value=0.0019  Score=54.91  Aligned_cols=60  Identities=17%  Similarity=0.182  Sum_probs=49.8

Q ss_pred             CCCCEEEEecCCCCHhHHHHh-Hc-CC-CEEEEEeCChHHHHHHHHhhhH---hCC-CceEEEEecc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSI-LL-GA-DFCFALECDKEILDIFIDNKNE---FEI-TNCDAILFEI  107 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~-~~-~~-~~v~~iD~~~~~~~~~~~~~~~---~~~-~~v~~~~~d~  107 (216)
                      .++.+++|+||+.|..+..++ .. +. .+|+++|.+|...+..+.|+..   ++. +++++++.-+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            478899999999999998877 43 33 7999999999999999999987   345 5788777666

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.97  E-value=0.00056  Score=55.58  Aligned_cols=75  Identities=9%  Similarity=0.070  Sum_probs=44.6

Q ss_pred             ceEEEEecccccccccccccCcccEEEEcCCCCCCCC-CC---CHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCc
Q psy17460         99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNC-GI---DLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNV  174 (216)
Q Consensus        99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~-~~---~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~  174 (216)
                      ++++++||+  .+.......++||+|++||||..... ..   +..-+..-...         ......+++.+.++|++
T Consensus        21 ~~~i~~gD~--~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~---------l~~l~~~~~~~~rvLk~   89 (297)
T 2zig_A           21 VHRLHVGDA--REVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAF---------LDELDRVWREVFRLLVP   89 (297)
T ss_dssp             CEEEEESCH--HHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHH---------HHHHHHHHHHHHHHEEE
T ss_pred             CCEEEECcH--HHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHH---------HHHHHHHHHHHHHHcCC
Confidence            678999999  77433222379999999999975411 00   00000000000         00123566778889999


Q ss_pred             cceeeeeeeec
Q psy17460        175 EQVDVIAEMKY  185 (216)
Q Consensus       175 ~~g~~~~~~~~  185 (216)
                       +|.++++++.
T Consensus        90 -~G~l~i~~~d   99 (297)
T 2zig_A           90 -GGRLVIVVGD   99 (297)
T ss_dssp             -EEEEEEEECC
T ss_pred             -CcEEEEEECC
Confidence             9998887763

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=96.55  E-value=0.0033  Score=53.33  Aligned_cols=45  Identities=9%  Similarity=0.014  Sum_probs=37.0

Q ss_pred             CCEEEEecCCCCHhHHHHhHcC--CCE----EEEEeCChHHHHHHHHhhhH
Q psy17460         50 GKTVLDLGCGSGILTFGSILLG--ADF----CFALECDKEILDIFIDNKNE   94 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~--~~~----v~~iD~~~~~~~~~~~~~~~   94 (216)
                      .-+|+|++||.|.+...+.+.|  ..-    |.++|+++.++..-+.|...
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            3589999999999998877766  234    88999999999888887653

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=96.36  E-value=0.0072  Score=56.75  Aligned_cols=79  Identities=22%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc----------cccccc-c-
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE----------KSLDSS-V-  116 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~----------~~~~~~-~-  116 (216)
                      .-+++|++||.|.++.-+.+.|. ..++++|+++.+++..+.|..     +..++.+|+.+          .+.... . 
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~~di~~~~~~~lp  614 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP-----GSTVFTEDCNILLKLVMAGETTNSRGQRLP  614 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHHHTCSBCTTCCBCC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC-----CCccccccHHHHhhhccchhhhhhhhhhcc
Confidence            44899999999999998888886 578899999999988777753     45566666521          111100 0 


Q ss_pred             ccCcccEEEEcCCCCCC
Q psy17460        117 FKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~  133 (216)
                      ..+.+|+|+..||....
T Consensus       615 ~~~~vDll~GGpPCQ~F  631 (1002)
T 3swr_A          615 QKGDVEMLCGGPPCQGF  631 (1002)
T ss_dssp             CTTTCSEEEECCCCTTC
T ss_pred             cCCCeeEEEEcCCCcch
Confidence            11479999999998765

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.33  E-value=0.003  Score=51.96  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=25.2

Q ss_pred             ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      ...+++||+  .+.......++||+|++||||...
T Consensus        14 ~~~ii~gD~--~~~l~~l~~~svDlI~tDPPY~~~   46 (323)
T 1boo_A           14 NGSMYIGDS--LELLESFPEESISLVMTSPPFALQ   46 (323)
T ss_dssp             SEEEEESCH--HHHGGGSCSSCEEEEEECCCCSSS
T ss_pred             CceEEeCcH--HHHHhhCCCCCeeEEEECCCCCCC
Confidence            578999999  664332233789999999999765

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=95.99  E-value=0.013  Score=53.81  Aligned_cols=44  Identities=23%  Similarity=0.218  Sum_probs=35.8

Q ss_pred             CCEEEEecCCCCHhHHHHhHcC------CCEEEEEeCChHHHHHHHHhhh
Q psy17460         50 GKTVLDLGCGSGILTFGSILLG------ADFCFALECDKEILDIFIDNKN   93 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~------~~~v~~iD~~~~~~~~~~~~~~   93 (216)
                      ..+|+|++||-|.++.-+.+.|      ..-++++|+++.+++..+.|..
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp  261 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP  261 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence            4589999999999987776654      3468899999999998888753

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=95.64  E-value=0.03  Score=54.08  Aligned_cols=80  Identities=20%  Similarity=0.123  Sum_probs=57.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc----------ccccccc-
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE----------KSLDSSV-  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~----------~~~~~~~-  116 (216)
                      ...+++|++||.|.+++-+.+.|. ..++++|+++.+++..+.|..     +..++.+|+.+          .+..... 
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~gdi~~~~~~~l  924 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP-----GTTVFTEDCNVLLKLVMAGEVTNSLGQRL  924 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC-----CCcEeeccHHHHhHhhhccchhhhhhhhc
Confidence            345899999999999998888885 568899999999988777753     34566666511          1110000 


Q ss_pred             -ccCcccEEEEcCCCCCC
Q psy17460        117 -FKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       117 -~~~~~D~vi~npp~~~~  133 (216)
                       ..+.+|+|+..||....
T Consensus       925 p~~~~vDvl~GGpPCQ~F  942 (1330)
T 3av4_A          925 PQKGDVEMLCGGPPCQGF  942 (1330)
T ss_dssp             CCTTTCSEEEECCCCTTT
T ss_pred             cccCccceEEecCCCccc
Confidence             11468999999998876

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.46  E-value=0.011  Score=48.47  Aligned_cols=33  Identities=12%  Similarity=0.247  Sum_probs=24.7

Q ss_pred             ceEEE-EecccccccccccccCcccEEEEcCCCCCC
Q psy17460         99 NCDAI-LFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        99 ~v~~~-~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      ...++ +||+  .+.......++||+|++||||...
T Consensus        38 ~~~l~i~gD~--l~~L~~l~~~svDlI~tDPPY~~~   71 (319)
T 1eg2_A           38 TRHVYDVCDC--LDTLAKLPDDSVQLIICDPPYNIM   71 (319)
T ss_dssp             EEEEEEECCH--HHHHHTSCTTCEEEEEECCCSBCC
T ss_pred             cceEEECCcH--HHHHHhCccCCcCEEEECCCCCCC
Confidence            46788 9999  765433333789999999999754

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.29  E-value=0.0068  Score=48.12  Aligned_cols=32  Identities=13%  Similarity=0.245  Sum_probs=24.0

Q ss_pred             eEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460        100 CDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       100 v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      ..++++|+  .+.......++||+|++||||...
T Consensus         5 ~~l~~gD~--~~~l~~l~~~~vdlI~~DPPY~~~   36 (260)
T 1g60_A            5 NKIHQMNC--FDFLDQVENKSVQLAVIDPPYNLS   36 (260)
T ss_dssp             SSEEECCH--HHHHHHSCTTCEEEEEECCCCSSC
T ss_pred             CeEEechH--HHHHHhccccccCEEEECCCCCCC
Confidence            46889999  665433333789999999999754

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.16  E-value=0.33  Score=38.41  Aligned_cols=80  Identities=10%  Similarity=0.070  Sum_probs=49.0

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHc-------CC-CEEEEEe-----CCh----------------------HHHHHH---
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILL-------GA-DFCFALE-----CDK----------------------EILDIF---   88 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~-------~~-~~v~~iD-----~~~----------------------~~~~~~---   88 (216)
                      ..+| .|+|+|+-.|..+..++..       +. .+|+++|     ..+                      +.++..   
T Consensus        68 ~vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~  146 (257)
T 3tos_A           68 DVPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDA  146 (257)
T ss_dssp             TSCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHH
T ss_pred             CCCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHH
Confidence            4456 7999999999988775542       22 6899999     221                      011111   


Q ss_pred             HHhhhHhCC--CceEEEEecccccccccc----cccCcccEEEEcCC
Q psy17460         89 IDNKNEFEI--TNCDAILFEINEKSLDSS----VFKQKVDTVIMNPP  129 (216)
Q Consensus        89 ~~~~~~~~~--~~v~~~~~d~~~~~~~~~----~~~~~~D~vi~npp  129 (216)
                      ..+....+.  ++++++.|++  .+-...    ....++|+|+.|.-
T Consensus       147 ~~~~~~~g~~~~~i~li~G~~--~dTL~~~l~~~~~~~~dlv~ID~D  191 (257)
T 3tos_A          147 HECSDFFGHVTQRSVLVEGDV--RETVPRYLAENPQTVIALAYFDLD  191 (257)
T ss_dssp             HHTTSTTTTSCCSEEEEESCH--HHHHHHHHHHCTTCCEEEEEECCC
T ss_pred             HhhhhhcCCCCCcEEEEEecH--HHHHHHHHHhCCCCceEEEEEcCc
Confidence            112223343  3799999999  443221    12247999999773

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.92  E-value=0.12  Score=42.00  Aligned_cols=78  Identities=18%  Similarity=0.100  Sum_probs=44.0

Q ss_pred             CCCEEEEecCCCCHhHHHHh----HcCC-C--EEEEEeCCh--------H-HHHHHHHhhhHh---CCC--ceEEEEecc
Q psy17460         49 DGKTVLDLGCGSGILTFGSI----LLGA-D--FCFALECDK--------E-ILDIFIDNKNEF---EIT--NCDAILFEI  107 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~----~~~~-~--~v~~iD~~~--------~-~~~~~~~~~~~~---~~~--~v~~~~~d~  107 (216)
                      +.-+|+|+|-|||...+...    +.++ .  +.+++|..+        + ..+.........   .-.  .+++..||+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            34589999999999654332    2233 3  456777532        1 112222222211   111  467899999


Q ss_pred             cccccccccccCcccEEEEcC
Q psy17460        108 NEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus       108 ~~~~~~~~~~~~~~D~vi~np  128 (216)
                        .+.........+|+++.|+
T Consensus       176 --~~~l~~l~~~~~Da~flDg  194 (308)
T 3vyw_A          176 --RKRIKEVENFKADAVFHDA  194 (308)
T ss_dssp             --HHHGGGCCSCCEEEEEECC
T ss_pred             --HHHHhhhcccceeEEEeCC
Confidence              6654333224799999986

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=93.89  E-value=0.4  Score=37.84  Aligned_cols=84  Identities=20%  Similarity=0.253  Sum_probs=59.7

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   .+..+++.|+ +|+..|.+++.++.+...+...+. ++..+.+|+.+.+-...      ..-
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            579999999988776   3345666776 899999999998888777776665 78889999933321111      112


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      +..|+++.|.-....
T Consensus        85 G~iDiLVNNAG~~~~   99 (255)
T 4g81_D           85 IHVDILINNAGIQYR   99 (255)
T ss_dssp             CCCCEEEECCCCCCC
T ss_pred             CCCcEEEECCCCCCC
Confidence            578999998755443

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.77  E-value=0.27  Score=38.83  Aligned_cols=80  Identities=18%  Similarity=0.212  Sum_probs=58.6

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   .+..+++.|+ +|+.+|.+++.++.+.+.+...+- ++.++.+|+.+.+-...      ..-
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            379999999988876   3344666676 899999999999888888877665 78899999933332111      011


Q ss_pred             CcccEEEEcCC
Q psy17460        119 QKVDTVIMNPP  129 (216)
Q Consensus       119 ~~~D~vi~npp  129 (216)
                      +..|+++.|.-
T Consensus        83 G~iDiLVNNAG   93 (254)
T 4fn4_A           83 SRIDVLCNNAG   93 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            57899998864

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=93.73  E-value=0.65  Score=37.18  Aligned_cols=83  Identities=17%  Similarity=0.194  Sum_probs=57.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..+++||-.|++.|.   ++..+++.|. +|+.++.+++.++.+...+...+. ++.++.+|+.+.+-....      .-
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            478899999987654   2344555665 899999999988887777766554 789999999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|++|.|.-...
T Consensus       107 g~id~lvnnAg~~~  120 (301)
T 3tjr_A          107 GGVDVVFSNAGIVV  120 (301)
T ss_dssp             SSCSEEEECCCCCC
T ss_pred             CCCCEEEECCCcCC
Confidence            37899999976553

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.58  E-value=0.27  Score=34.44  Aligned_cols=70  Identities=19%  Similarity=0.272  Sum_probs=45.2

Q ss_pred             CCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         50 GKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .++|+-+|+|  .++..    +...|. .|+++|.+++.++.++..       .+.++.+|..+.+.........+|.|+
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~~d~vi   75 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE-------GFDAVIADPTDESFYRSLDLEGVSAVL   75 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------TCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC-------CCcEEECCCCCHHHHHhCCcccCCEEE
Confidence            4578888985  34443    333454 899999999887766542       467889999333222111125789999


Q ss_pred             EcCC
Q psy17460        126 MNPP  129 (216)
Q Consensus       126 ~npp  129 (216)
                      ...|
T Consensus        76 ~~~~   79 (141)
T 3llv_A           76 ITGS   79 (141)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            8766

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.41  E-value=0.3  Score=38.16  Aligned_cols=84  Identities=19%  Similarity=0.311  Sum_probs=56.9

Q ss_pred             CCCCEEEEecC-CCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGC-GSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~-GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|+ |.|.   ++..+++.|. +|+.++.+++..+.....+...+-.++.++.+|+.+.+-....      .
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            46889999997 5555   3344666675 8999999998887777766544433799999999332211110      1


Q ss_pred             cCcccEEEEcCCCCC
Q psy17460        118 KQKVDTVIMNPPFGT  132 (216)
Q Consensus       118 ~~~~D~vi~npp~~~  132 (216)
                      -+.+|++|.|.-...
T Consensus        99 ~g~id~li~~Ag~~~  113 (266)
T 3o38_A           99 AGRLDVLVNNAGLGG  113 (266)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             hCCCcEEEECCCcCC
Confidence            147899999876543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.38  E-value=0.38  Score=37.66  Aligned_cols=80  Identities=19%  Similarity=0.128  Sum_probs=56.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...+. ++.++.+|+.+.+-....      .-
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            478899999987765   3344666676 899999999888877777665554 789999999333211110      11


Q ss_pred             CcccEEEEcCC
Q psy17460        119 QKVDTVIMNPP  129 (216)
Q Consensus       119 ~~~D~vi~npp  129 (216)
                      +.+|++|.|.-
T Consensus        87 g~id~lv~nAg   97 (264)
T 3ucx_A           87 GRVDVVINNAF   97 (264)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            47899999873

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=93.37  E-value=0.19  Score=39.32  Aligned_cols=80  Identities=14%  Similarity=0.121  Sum_probs=54.3

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..+++||-.|++.| ++..    +++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus        27 l~~k~vlITGas~g-IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           27 LSGQVAVVTGASRG-IGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGG-EAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTTCEEEESSTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCC-ceeEEEecCCCHHHHHHHHHHHHHh
Confidence            36788888886654 4433    445565 899999999888877777765554 789999999332211110      1


Q ss_pred             cCcccEEEEcCCC
Q psy17460        118 KQKVDTVIMNPPF  130 (216)
Q Consensus       118 ~~~~D~vi~npp~  130 (216)
                      -+.+|++|.|.-.
T Consensus       104 ~g~id~lv~~Ag~  116 (262)
T 3rkr_A          104 HGRCDVLVNNAGV  116 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1468999998765

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=93.10  E-value=0.33  Score=37.58  Aligned_cols=81  Identities=12%  Similarity=0.124  Sum_probs=54.6

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...+. ++.++.+|+.+.+-....      .-
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGG-TAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            367889988876553   2334555565 899999999888877777665443 788999999332211110      11


Q ss_pred             CcccEEEEcCCC
Q psy17460        119 QKVDTVIMNPPF  130 (216)
Q Consensus       119 ~~~D~vi~npp~  130 (216)
                      +.+|++|.|.-.
T Consensus        85 g~id~li~~Ag~   96 (253)
T 3qiv_A           85 GGIDYLVNNAAI   96 (253)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            378999998765

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=92.99  E-value=0.26  Score=38.40  Aligned_cols=81  Identities=16%  Similarity=0.091  Sum_probs=56.0

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccC
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQ  119 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~  119 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...+. ++.++.+|+.+.+-...      .. +
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~-g   82 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGG-RIVARSLDARNEDEVTAFLNAADAH-A   82 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECcCCCHHHHHHHHHHHHhh-C
Confidence            67889988887664   2344555666 899999999888877777666554 78999999933221111      11 4


Q ss_pred             cccEEEEcCCCCC
Q psy17460        120 KVDTVIMNPPFGT  132 (216)
Q Consensus       120 ~~D~vi~npp~~~  132 (216)
                      .+|++|.|.-...
T Consensus        83 ~id~lv~nAg~~~   95 (252)
T 3h7a_A           83 PLEVTIFNVGANV   95 (252)
T ss_dssp             CEEEEEECCCCCC
T ss_pred             CceEEEECCCcCC
Confidence            7899998876543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.88  E-value=0.32  Score=34.28  Aligned_cols=71  Identities=15%  Similarity=0.147  Sum_probs=44.8

Q ss_pred             CEEEEecCCC-CHhH-HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         51 KTVLDLGCGS-GILT-FGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        51 ~~vlD~g~Gt-G~~~-~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ..|+=+|||. |... ..+...|. .|+++|.+++.++.++.    .   .+.++.+|..+.+..........|.|++..
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----R---GVRAVLGNAANEEIMQLAHLECAKWLILTI   79 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----T---TCEEEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----c---CCCEEECCCCCHHHHHhcCcccCCEEEEEC
Confidence            4688888864 3322 22334454 89999999998877654    1   467899999333322221125789998765


Q ss_pred             C
Q psy17460        129 P  129 (216)
Q Consensus       129 p  129 (216)
                      |
T Consensus        80 ~   80 (140)
T 3fwz_A           80 P   80 (140)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=92.88  E-value=0.43  Score=37.25  Aligned_cols=83  Identities=12%  Similarity=0.098  Sum_probs=55.7

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+++..+.....+...+. ++.++.+|+.+.+-....      .-
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGG-KAIGLECNVTDEQHREAVIKAALDQF   87 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            468889888877654   2344555676 899999999888777776665554 789999999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +..|++|.|.-...
T Consensus        88 g~id~lv~nAg~~~  101 (256)
T 3gaf_A           88 GKITVLVNNAGGGG  101 (256)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            47899999875543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=92.84  E-value=0.33  Score=43.76  Aligned_cols=100  Identities=11%  Similarity=0.087  Sum_probs=57.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC-------------CCEEEEEeC---ChHHHHHHHHh-----------hhHh-----C
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG-------------ADFCFALEC---DKEILDIFIDN-----------KNEF-----E   96 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~-------------~~~v~~iD~---~~~~~~~~~~~-----------~~~~-----~   96 (216)
                      +.-+|+|+|.|+|...+.+.+..             ..+++++|.   +.+.+..+...           +...     +
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            34699999999999877655431             147899998   44444433221           1111     1


Q ss_pred             C-----C----ceEEEEecccccccccccc---cCcccEEEEcCCCCCCCCCC-CHHHHHHHhhcCC
Q psy17460         97 I-----T----NCDAILFEINEKSLDSSVF---KQKVDTVIMNPPFGTRNCGI-DLAFVQYAADISK  150 (216)
Q Consensus        97 ~-----~----~v~~~~~d~~~~~~~~~~~---~~~~D~vi~npp~~~~~~~~-~~~~~~~~l~~~~  150 (216)
                      +     .    .++++.||+  .+......   ...+|++|.|+.=...+... ...++.......+
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~--~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~  202 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDV--NTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTR  202 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCH--HHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEE
T ss_pred             ceEEEecCCcEEEEEEccCH--HHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhC
Confidence            0     1    578999999  66543321   26899999987322222222 2445555544443

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=92.34  E-value=0.66  Score=36.48  Aligned_cols=84  Identities=17%  Similarity=0.126  Sum_probs=54.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCC------------hHHHHHHHHhhhHhCCCceEEEEeccccccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECD------------KEILDIFIDNKNEFEITNCDAILFEINEKSL  112 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~------------~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  112 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+            ++.++.....+...+. ++.++.+|+.+.+-
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~   88 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQADVRDRES   88 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECCTTCHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCCCCCHHH
Confidence            468899999976554   2344555665 89999987            6666655555555454 78999999933221


Q ss_pred             cccc------ccCcccEEEEcCCCCCC
Q psy17460        113 DSSV------FKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       113 ~~~~------~~~~~D~vi~npp~~~~  133 (216)
                      ....      .-+..|++|.|.-....
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~~~~  115 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGIAPM  115 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence            1110      11478999998765543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=92.34  E-value=0.38  Score=38.24  Aligned_cols=80  Identities=18%  Similarity=0.108  Sum_probs=53.5

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ  119 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~  119 (216)
                      +++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...+- ++.++.+|+.+.+-....      .-+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGG-QAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            67889988877654   2334555665 899999999887777666654443 688999999332211110      114


Q ss_pred             cccEEEEcCCC
Q psy17460        120 KVDTVIMNPPF  130 (216)
Q Consensus       120 ~~D~vi~npp~  130 (216)
                      .+|++|.|.-.
T Consensus       105 ~iD~lVnnAg~  115 (283)
T 3v8b_A          105 HLDIVVANAGI  115 (283)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999988765

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=92.33  E-value=0.65  Score=36.15  Aligned_cols=81  Identities=16%  Similarity=0.243  Sum_probs=51.8

Q ss_pred             CCCCEEEEecCCCCHhHH----HHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGILTF----GSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~----~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++.| ++.    .+++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus         7 l~~k~vlVTGas~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            7 LEGCTALVTGGSRG-IGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             CTTCEEEEESCSSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            36788998886544 443    3445565 899999998877666555544443 688999999332211110      0


Q ss_pred             c-CcccEEEEcCCCC
Q psy17460        118 K-QKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~-~~~D~vi~npp~~  131 (216)
                      - +.+|++|.|.-..
T Consensus        84 ~~g~id~lv~~Ag~~   98 (260)
T 2ae2_A           84 FHGKLNILVNNAGIV   98 (260)
T ss_dssp             TTTCCCEEEECCCCC
T ss_pred             cCCCCCEEEECCCCC
Confidence            0 4789999987644

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=92.27  E-value=0.65  Score=37.09  Aligned_cols=82  Identities=15%  Similarity=0.149  Sum_probs=53.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCC------------hHHHHHHHHhhhHhCCCceEEEEeccccccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECD------------KEILDIFIDNKNEFEITNCDAILFEINEKSL  112 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~------------~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  112 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+            ++.++.....+...+. ++.++.+|+.+.+-
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR-RIIASQVDVRDFDA  103 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHH
Confidence            478899999987665   2344556665 89999987            5666655555555443 78999999933221


Q ss_pred             cccc------ccCcccEEEEcCCCC
Q psy17460        113 DSSV------FKQKVDTVIMNPPFG  131 (216)
Q Consensus       113 ~~~~------~~~~~D~vi~npp~~  131 (216)
                      ....      .-+..|++|.|.-..
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~~  128 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAALA  128 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCC
Confidence            1110      114789999886544

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.26  E-value=1.1  Score=35.02  Aligned_cols=83  Identities=13%  Similarity=0.139  Sum_probs=54.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...+-.++.++.+|+.+.+-....      .-
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            468888888876554   2233555565 8999999998888777766655433789999999332211110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        87 g~id~lvnnAg~~   99 (262)
T 3pk0_A           87 GGIDVVCANAGVF   99 (262)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3789999887544

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=92.25  E-value=0.63  Score=36.90  Aligned_cols=80  Identities=14%  Similarity=0.057  Sum_probs=53.4

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccc-c--cc------c
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL-D--SS------V  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~--~~------~  116 (216)
                      .+++||-.|++.|.   ++..+++.|. +|+.++.++...+.+...+...+-.++.++.+|+  .+. .  ..      .
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl--~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDV--TDPIATMSSLADFIKT   87 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCT--TSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccC--CCcHHHHHHHHHHHHH
Confidence            57788888876553   2233455565 8999999998877776666554433799999999  443 1  00      0


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+.+|++|.|.-..
T Consensus        88 ~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           88 HFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHSSCCEEEECCCCC
T ss_pred             hCCCCCEEEECCccc
Confidence            114799999998654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=92.23  E-value=0.67  Score=36.42  Aligned_cols=82  Identities=18%  Similarity=0.247  Sum_probs=52.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c-
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F-  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~-  117 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...+. ++.++.+|+.+.+-....      . 
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVF   96 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            367889988875543   2233445565 899999998877766555544443 688999999332211110      0 


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      .+.+|++|.|.-..
T Consensus        97 ~g~id~lv~nAg~~  110 (273)
T 1ae1_A           97 DGKLNILVNNAGVV  110 (273)
T ss_dssp             TSCCCEEEECCCCC
T ss_pred             CCCCcEEEECCCCC
Confidence            14789999987543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=92.22  E-value=1.4  Score=34.67  Aligned_cols=83  Identities=10%  Similarity=0.139  Sum_probs=55.1

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .-
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGL-EGRGAVLNVNDATAVDALVESTLKEF  103 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            467888888866554   2334555666 899999999888877777666554 688899999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +..|++|.|.-...
T Consensus       104 g~iD~lvnnAg~~~  117 (270)
T 3ftp_A          104 GALNVLVNNAGITQ  117 (270)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            47899999876543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=92.12  E-value=0.35  Score=40.04  Aligned_cols=45  Identities=27%  Similarity=0.212  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++||-.|+|. |.+++.+++. |+.+|+++|.+++..+.++.
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  225 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE  225 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            456889999999853 4455555554 55689999999988887765

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.11  E-value=1.6  Score=34.24  Aligned_cols=83  Identities=16%  Similarity=0.050  Sum_probs=53.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCC------------hHHHHHHHHhhhHhCCCceEEEEeccccccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECD------------KEILDIFIDNKNEFEITNCDAILFEINEKSL  112 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~------------~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  112 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+            ...++.+...+...+. ++.++.+|+.+.+-
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR-KAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCC-ceEEEEccCCCHHH
Confidence            468899999987654   2344555665 89999987            5566665555555443 78999999933221


Q ss_pred             cccc------ccCcccEEEEcCCCCC
Q psy17460        113 DSSV------FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       113 ~~~~------~~~~~D~vi~npp~~~  132 (216)
                      ....      .-+.+|++|.|.-...
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~  111 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICP  111 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCc
Confidence            1110      1137899999876543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=92.10  E-value=0.77  Score=36.25  Aligned_cols=83  Identities=16%  Similarity=0.180  Sum_probs=55.6

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .-
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGG-KALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            478899999877654   2344555665 899999998887777666655554 688999999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|++|.|.-...
T Consensus       108 g~iD~lvnnAg~~~  121 (276)
T 3r1i_A          108 GGIDIAVCNAGIVS  121 (276)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            37899999876543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=92.07  E-value=0.46  Score=37.04  Aligned_cols=82  Identities=17%  Similarity=0.106  Sum_probs=53.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...+- ++.++.+|+.+.+-....      .-
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPG-QILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTT-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            367888888876554   2333555665 899999999888877766654443 789999999332211110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +..|++|.|.-..
T Consensus        82 g~id~lv~nAg~~   94 (257)
T 3imf_A           82 GRIDILINNAAGN   94 (257)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4789999887543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=91.95  E-value=0.42  Score=37.79  Aligned_cols=83  Identities=16%  Similarity=0.154  Sum_probs=54.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc-----ccC
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV-----FKQ  119 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-----~~~  119 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...+. ++.++.+|+.+.+-....     ..+
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~g  108 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGG-TAQELAGDLSEAGAGTDLIERAEAIA  108 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTC-CEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            378889988876554   2334555665 899999998877776666655443 789999999333211110     014


Q ss_pred             cccEEEEcCCCCC
Q psy17460        120 KVDTVIMNPPFGT  132 (216)
Q Consensus       120 ~~D~vi~npp~~~  132 (216)
                      .+|++|.|.-...
T Consensus       109 ~iD~lvnnAg~~~  121 (275)
T 4imr_A          109 PVDILVINASAQI  121 (275)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999876543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=91.92  E-value=0.8  Score=37.01  Aligned_cols=81  Identities=12%  Similarity=0.119  Sum_probs=56.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccc--cc-----
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDS--SV-----  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~--~~-----  116 (216)
                      ..+++||-.|++.|.   ++..++..|. +|++++.+++..+.+...+...+.. ++.++.+|+  .+...  ..     
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl--~~~~~v~~~~~~~~   82 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDV--ASREGFKMAADEVE   82 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCT--TCHHHHHHHHHHHH
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCC--CCHHHHHHHHHHHH
Confidence            467899999987665   2344555665 8999999998888777766655432 689999999  44321  10     


Q ss_pred             -ccCcccEEEEcCCCC
Q psy17460        117 -FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 -~~~~~D~vi~npp~~  131 (216)
                       .-+.+|++|.|.-..
T Consensus        83 ~~~g~id~lv~nAg~~   98 (319)
T 3ioy_A           83 ARFGPVSILCNNAGVN   98 (319)
T ss_dssp             HHTCCEEEEEECCCCC
T ss_pred             HhCCCCCEEEECCCcC
Confidence             114689999987654

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=91.89  E-value=1.6  Score=36.60  Aligned_cols=70  Identities=9%  Similarity=0.092  Sum_probs=43.3

Q ss_pred             ccccCCHHHH----HHHHHHHHh---hcCCCCCCEEEEecCCCCHhHHHHhHc--------CCCEEEEEeCChHHHHHHH
Q psy17460         25 EQYHTPPHLA----ATILHTIQN---NYNDIDGKTVLDLGCGSGILTFGSILL--------GADFCFALECDKEILDIFI   89 (216)
Q Consensus        25 ~~~~t~~~~~----~~~~~~~~~---~~~~~~~~~vlD~g~GtG~~~~~~~~~--------~~~~v~~iD~~~~~~~~~~   89 (216)
                      +.|.|+.++.    +.+...+..   .+....+-.|+|+|+|+|.++..++..        ...+++.||+|+...+.-+
T Consensus        49 GDF~Tapeis~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~  128 (387)
T 1zkd_A           49 GDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ  128 (387)
T ss_dssp             --CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred             CCeeCCCchHHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHH
Confidence            4577766543    333322222   112223447999999999998776542        1248999999998888666


Q ss_pred             HhhhH
Q psy17460         90 DNKNE   94 (216)
Q Consensus        90 ~~~~~   94 (216)
                      +.+..
T Consensus       129 ~~L~~  133 (387)
T 1zkd_A          129 TLLAG  133 (387)
T ss_dssp             HHSTT
T ss_pred             HHhcC
Confidence            65543

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=91.81  E-value=1  Score=35.55  Aligned_cols=81  Identities=12%  Similarity=0.040  Sum_probs=52.5

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeC-ChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALEC-DKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~-~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++. +++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGA-RVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTC-CEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence            468889988877654   2344555665 8999995 77766666666655454 789999999433221110      1


Q ss_pred             cCcccEEEEcCCC
Q psy17460        118 KQKVDTVIMNPPF  130 (216)
Q Consensus       118 ~~~~D~vi~npp~  130 (216)
                      -+..|++|.|.-.
T Consensus       105 ~g~iD~lvnnAg~  117 (280)
T 4da9_A          105 FGRIDCLVNNAGI  117 (280)
T ss_dssp             HSCCCEEEEECC-
T ss_pred             cCCCCEEEECCCc
Confidence            1378999988765

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=91.74  E-value=0.84  Score=35.79  Aligned_cols=82  Identities=13%  Similarity=0.033  Sum_probs=53.1

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..+++||-.|++ |.++..    +++.|. +|++++.+++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus        29 l~~k~vlITGas-ggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           29 VTGEIVLITGAG-HGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAE  105 (272)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            467888888865 445444    444565 899999998877766665555443 689999999332211110      1


Q ss_pred             cCcccEEEEcCCCCC
Q psy17460        118 KQKVDTVIMNPPFGT  132 (216)
Q Consensus       118 ~~~~D~vi~npp~~~  132 (216)
                      -+.+|+||.|.-...
T Consensus       106 ~g~iD~li~~Ag~~~  120 (272)
T 1yb1_A          106 IGDVSILVNNAGVVY  120 (272)
T ss_dssp             TCCCSEEEECCCCCC
T ss_pred             CCCCcEEEECCCcCC
Confidence            147899999876543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=91.64  E-value=1.9  Score=33.60  Aligned_cols=83  Identities=20%  Similarity=0.232  Sum_probs=54.7

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH-hCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNE-FEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+.. .+. ++.++.+|+.+.+-....      .
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~   95 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGT-DVHTVAIDLAEPDAPAELARRAAEA   95 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence            367888888876654   2334555665 899999999888776666544 343 789999999333211110      1


Q ss_pred             cCcccEEEEcCCCCC
Q psy17460        118 KQKVDTVIMNPPFGT  132 (216)
Q Consensus       118 ~~~~D~vi~npp~~~  132 (216)
                      -+..|++|.|.-...
T Consensus        96 ~g~id~lv~nAg~~~  110 (266)
T 4egf_A           96 FGGLDVLVNNAGISH  110 (266)
T ss_dssp             HTSCSEEEEECCCCC
T ss_pred             cCCCCEEEECCCcCC
Confidence            147899999876543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=91.62  E-value=1.1  Score=34.29  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=54.6

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccC
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQ  119 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~  119 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-...      ...+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGF-KARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            57788888866543   2333555565 899999999888877777666554 78999999933221111      0114


Q ss_pred             cccEEEEcCCCCC
Q psy17460        120 KVDTVIMNPPFGT  132 (216)
Q Consensus       120 ~~D~vi~npp~~~  132 (216)
                      .+|++|.|.-...
T Consensus        82 ~id~li~~Ag~~~   94 (247)
T 3lyl_A           82 AIDILVNNAGITR   94 (247)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            6899999876543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=91.52  E-value=0.65  Score=36.69  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=49.7

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .+++||-.|++ |.++..    ++..|. +|++++.+++.++.....+...+..++.++.+|+.+.+-....      .-
T Consensus        27 ~~k~vlITGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  104 (286)
T 1xu9_A           27 QGKKVIVTGAS-KGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM  104 (286)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            57788888865 444443    444565 8999999998877666555544433688999999332211110      01


Q ss_pred             CcccEEEEc
Q psy17460        119 QKVDTVIMN  127 (216)
Q Consensus       119 ~~~D~vi~n  127 (216)
                      +.+|++|.|
T Consensus       105 g~iD~li~n  113 (286)
T 1xu9_A          105 GGLDMLILN  113 (286)
T ss_dssp             TSCSEEEEC
T ss_pred             CCCCEEEEC
Confidence            478999988

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=91.51  E-value=3  Score=31.60  Aligned_cols=81  Identities=15%  Similarity=0.052  Sum_probs=51.3

Q ss_pred             CCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhh-HhCCCceEEEEeccccccccccc------ccC
Q psy17460         50 GKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKN-EFEITNCDAILFEINEKSLDSSV------FKQ  119 (216)
Q Consensus        50 ~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~------~~~  119 (216)
                      ++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+. ..+. ++.++.+|+.+.+-....      .-+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGV-EVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCC-eEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            5678888865443   2233445565 89999999888777666554 3343 789999999332211110      013


Q ss_pred             cccEEEEcCCCCC
Q psy17460        120 KVDTVIMNPPFGT  132 (216)
Q Consensus       120 ~~D~vi~npp~~~  132 (216)
                      .+|++|.|.-...
T Consensus        80 ~id~li~~Ag~~~   92 (235)
T 3l77_A           80 DVDVVVANAGLGY   92 (235)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             CCCEEEECCcccc
Confidence            7899999876543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=91.39  E-value=0.97  Score=34.90  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=52.3

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++.++.....+...+. ++.++.+|+.+.+-....      .-
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGA-KVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            367889988876543   2233455565 899999998877766665554443 688999999332211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        83 g~id~lv~nAg~~   95 (247)
T 2jah_A           83 GGLDILVNNAGIM   95 (247)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4789999887543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.35  E-value=1.8  Score=34.35  Aligned_cols=79  Identities=20%  Similarity=0.173  Sum_probs=54.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   .+..+++.|+ +|+..|.+++.++.+...+   +- ++..+.+|+.+.+-...      ..-
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~  101 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---GG-GAVGIQADSANLAELDRLYEKVKAEA  101 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CT-TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CC-CeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            489999999988776   3445666776 8999999998887665544   32 67788999933321111      011


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +..|+++.|.-..
T Consensus       102 G~iDiLVNNAG~~  114 (273)
T 4fgs_A          102 GRIDVLFVNAGGG  114 (273)
T ss_dssp             SCEEEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            5789999886543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=91.34  E-value=0.75  Score=35.52  Aligned_cols=80  Identities=9%  Similarity=0.140  Sum_probs=50.9

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .+++||-.|++ |.++..    +++.|. +|++++.+++..+.....+...+. ++.++.+|+.+.+-....      .-
T Consensus        12 ~~k~vlItGas-ggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           12 DNRVAIVTGGA-QNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGH-DVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            67888888865 444444    444565 899999998776665555544443 689999999332211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|+||.|....
T Consensus        89 ~~id~vi~~Ag~~  101 (260)
T 3awd_A           89 GRVDILVACAGIC  101 (260)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3689999887543

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=91.22  E-value=0.36  Score=38.35  Aligned_cols=81  Identities=19%  Similarity=0.159  Sum_probs=54.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++.++.+...+...+. ++.++.+|+.+.+-....      .-
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGG-EAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTC-CEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            468889988877654   2344555665 899999999887777666654443 788999999332211110      11


Q ss_pred             CcccEEEEcCCC
Q psy17460        119 QKVDTVIMNPPF  130 (216)
Q Consensus       119 ~~~D~vi~npp~  130 (216)
                      +.+|++|.|.-.
T Consensus        84 g~iD~lvnnAg~   95 (280)
T 3tox_A           84 GGLDTAFNNAGA   95 (280)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999998754

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=91.16  E-value=0.74  Score=36.38  Aligned_cols=82  Identities=16%  Similarity=0.140  Sum_probs=52.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCC----------------hHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECD----------------KEILDIFIDNKNEFEITNCDAILFEIN  108 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~----------------~~~~~~~~~~~~~~~~~~v~~~~~d~~  108 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+                ++.++.....+...+. ++.++.+|+.
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~   86 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNR-RIVTAEVDVR   86 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTT
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCC-ceEEEEcCCC
Confidence            478899999987765   2344556665 89999987                5555555554444443 7899999993


Q ss_pred             cccccccc------ccCcccEEEEcCCCC
Q psy17460        109 EKSLDSSV------FKQKVDTVIMNPPFG  131 (216)
Q Consensus       109 ~~~~~~~~------~~~~~D~vi~npp~~  131 (216)
                      +.+-....      .-+..|++|.|.-..
T Consensus        87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~  115 (286)
T 3uve_A           87 DYDALKAAVDSGVEQLGRLDIIVANAGIG  115 (286)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence            32211110      114789999987654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=91.14  E-value=0.73  Score=36.33  Aligned_cols=80  Identities=18%  Similarity=0.129  Sum_probs=51.5

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .++++|-.|++.| ++..    +++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .-
T Consensus        21 ~~k~vlVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           21 DSEVALVTGATSG-IGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERY   97 (277)
T ss_dssp             TSCEEEEETCSSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            6788998887654 4433    445565 899999998877666555554443 688999999332211110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        98 g~iD~lv~~Ag~~  110 (277)
T 2rhc_B           98 GPVDVLVNNAGRP  110 (277)
T ss_dssp             CSCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3689999987543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.09  E-value=0.76  Score=36.22  Aligned_cols=83  Identities=14%  Similarity=0.121  Sum_probs=54.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeC-------------ChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALEC-------------DKEILDIFIDNKNEFEITNCDAILFEINEKS  111 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~-------------~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  111 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.             +++.++.....+...+. ++.++.+|+.+.+
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~   90 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR-KALTRVLDVRDDA   90 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTTCHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHH
Confidence            478899999987665   2344556665 8999998             66666666665555443 7889999993322


Q ss_pred             ccccc------ccCcccEEEEcCCCCC
Q psy17460        112 LDSSV------FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       112 ~~~~~------~~~~~D~vi~npp~~~  132 (216)
                      -....      .-+..|++|.|.-...
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~~~  117 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGVLS  117 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            11110      1147899999876543

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=91.09  E-value=0.32  Score=38.41  Aligned_cols=83  Identities=18%  Similarity=0.240  Sum_probs=55.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .-
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGH-DAEAVAFDVTSESEIIEAFARLDEQG  101 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            478889988866554   2334555665 899999999888877776665554 788999999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|++|.|.-...
T Consensus       102 g~iD~lv~nAg~~~  115 (271)
T 4ibo_A          102 IDVDILVNNAGIQF  115 (271)
T ss_dssp             CCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            46899999876543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=90.97  E-value=3.8  Score=31.84  Aligned_cols=84  Identities=15%  Similarity=0.022  Sum_probs=55.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH-hCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNE-FEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+.. .+-.++.++.+|+.+.+-....      .
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            468899999977664   2344555665 899999999888777766654 3322588999999332211110      1


Q ss_pred             cCcccEEEEcCCCCC
Q psy17460        118 KQKVDTVIMNPPFGT  132 (216)
Q Consensus       118 ~~~~D~vi~npp~~~  132 (216)
                      -+..|++|.|.-...
T Consensus        85 ~g~id~lvnnAg~~~   99 (265)
T 3lf2_A           85 LGCASILVNNAGQGR   99 (265)
T ss_dssp             HCSCSEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            147899999876543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=90.95  E-value=1.3  Score=35.26  Aligned_cols=81  Identities=17%  Similarity=0.078  Sum_probs=53.2

Q ss_pred             CCCCEEEEecCCCC--H---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------
Q psy17460         48 IDGKTVLDLGCGSG--I---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG--~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------  116 (216)
                      ..++++|-.|++.|  .   ++..+++.|. +|+.++.++...+.+.......+  ++.++.+|+.+.+-....      
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHH
Confidence            47889999998743  3   3445666676 89999999766655555554444  688999999332211110      


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+.+|++|.|.-..
T Consensus       106 ~~g~iD~lVnnAG~~  120 (293)
T 3grk_A          106 KWGKLDFLVHAIGFS  120 (293)
T ss_dssp             HTSCCSEEEECCCCC
T ss_pred             hcCCCCEEEECCccC
Confidence            114789999987654

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=90.95  E-value=1.6  Score=34.26  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=51.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-cccCcccE
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-VFKQKVDT  123 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~D~  123 (216)
                      .+|+++|-.|++.|.   .+..+++.|+ +|+..|.+..  +.+...+...+- ++..+.+|+.+.+-... ......|+
T Consensus         7 L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~g~iDi   82 (247)
T 4hp8_A            7 LEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDGG-NASALLIDFADPLAAKDSFTDAGFDI   82 (247)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTC-CEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHHhCCCCE
Confidence            479999999988877   3455667776 8999998753  233333444443 68899999943332211 11257899


Q ss_pred             EEEcCCCC
Q psy17460        124 VIMNPPFG  131 (216)
Q Consensus       124 vi~npp~~  131 (216)
                      ++.|.-..
T Consensus        83 LVNNAGi~   90 (247)
T 4hp8_A           83 LVNNAGII   90 (247)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
Confidence            99886443

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=90.94  E-value=0.83  Score=35.94  Aligned_cols=83  Identities=13%  Similarity=0.126  Sum_probs=53.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeC-------------ChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALEC-------------DKEILDIFIDNKNEFEITNCDAILFEINEKS  111 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~-------------~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  111 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.             +++.++.....+...+. ++.++.+|+.+.+
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~   86 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR-RIVAAVVDTRDFD   86 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHH
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHH
Confidence            478899999977665   2344556676 8999998             56666666555554443 7889999993322


Q ss_pred             ccccc------ccCcccEEEEcCCCCC
Q psy17460        112 LDSSV------FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       112 ~~~~~------~~~~~D~vi~npp~~~  132 (216)
                      -....      .-+.+|++|.|.-...
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~~~  113 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGVAA  113 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            11110      1146899999876543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=90.83  E-value=0.94  Score=35.49  Aligned_cols=83  Identities=18%  Similarity=0.164  Sum_probs=53.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeC-ChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALEC-DKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~-~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..+++||-.|++.|.   ++..+++.|. +|+.++. +++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGY-KAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHh
Confidence            468888888876654   2334555665 8999988 56666666666655554 789999999332211110      1


Q ss_pred             cCcccEEEEcCCCCC
Q psy17460        118 KQKVDTVIMNPPFGT  132 (216)
Q Consensus       118 ~~~~D~vi~npp~~~  132 (216)
                      .+.+|++|.|.-...
T Consensus       105 ~g~id~li~nAg~~~  119 (271)
T 4iin_A          105 DGGLSYLVNNAGVVR  119 (271)
T ss_dssp             HSSCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCcCC
Confidence            147899999876544

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=90.71  E-value=0.91  Score=35.43  Aligned_cols=81  Identities=16%  Similarity=0.133  Sum_probs=51.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh--CCCceEEEEeccccccccccc------
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEF--EITNCDAILFEINEKSLDSSV------  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~------  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...  +. ++.++.+|+.+.+-....      
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~   88 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDA-EVLTTVADVSDEAQVEAYVTATTE   88 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTC-CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCc-eEEEEEccCCCHHHHHHHHHHHHH
Confidence            367889988876543   2233455565 8999999988776665555443  32 688999999332211110      


Q ss_pred             ccCcccEEEEcCCC
Q psy17460        117 FKQKVDTVIMNPPF  130 (216)
Q Consensus       117 ~~~~~D~vi~npp~  130 (216)
                      .-+.+|++|.|.-.
T Consensus        89 ~~g~id~lv~nAg~  102 (267)
T 1iy8_A           89 RFGRIDGFFNNAGI  102 (267)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence            01368999998654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=90.69  E-value=1.3  Score=39.70  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=49.2

Q ss_pred             CCEEEEecCCCCHhHHHHhHcC------------C-CEEEEEeC---ChHHHHHHHHh-----------hhHh-----CC
Q psy17460         50 GKTVLDLGCGSGILTFGSILLG------------A-DFCFALEC---DKEILDIFIDN-----------KNEF-----EI   97 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~------------~-~~v~~iD~---~~~~~~~~~~~-----------~~~~-----~~   97 (216)
                      .-+|+|+|.|||...+...+..            . -+++++|.   +++.+..+...           ....     ++
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            3599999999999876644421            1 36899998   77777644332           1111     10


Q ss_pred             ---------CceEEEEecccccccccccc---cCcccEEEEcC
Q psy17460         98 ---------TNCDAILFEINEKSLDSSVF---KQKVDTVIMNP  128 (216)
Q Consensus        98 ---------~~v~~~~~d~~~~~~~~~~~---~~~~D~vi~np  128 (216)
                               -.+++..||+  .+......   ...||+++.|+
T Consensus       147 ~~~~~~~~~~~l~l~~gd~--~~~l~~~~~~~~~~~d~~~~D~  187 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDI--NELTSQLDDSLNQKVDAWFLDG  187 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCH--HHHGGGBCGGGTTCEEEEEECC
T ss_pred             eEEEecCCcEEEEEecCCH--HHHHHhcccccCCcccEEEECC
Confidence                     0467888998  65443321   25799999987

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=90.54  E-value=2.2  Score=34.36  Aligned_cols=83  Identities=17%  Similarity=0.077  Sum_probs=52.5

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCC------------hHHHHHHHHhhhHhCCCceEEEEeccccccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECD------------KEILDIFIDNKNEFEITNCDAILFEINEKSL  112 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~------------~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  112 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+            ++.++.....+...+. ++.++.+|+.+.+-
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR-RIIARQADVRDLAS  121 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHH
Confidence            468889988877654   2344556666 89999886            5555555555554443 78999999933221


Q ss_pred             cccc------ccCcccEEEEcCCCCC
Q psy17460        113 DSSV------FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       113 ~~~~------~~~~~D~vi~npp~~~  132 (216)
                      ....      .-+.+|++|.|.-...
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~  147 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISN  147 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            1110      1147899999876543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=90.50  E-value=0.8  Score=35.54  Aligned_cols=84  Identities=13%  Similarity=0.088  Sum_probs=55.3

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh--CCCceEEEEeccccccccccc------
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEF--EITNCDAILFEINEKSLDSSV------  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~------  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...  +..++.++.+|+.+.+-....      
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            367889988887654   2344556676 8999999998887777666544  212688999999332211110      


Q ss_pred             ccCcccEEEEcCCCCC
Q psy17460        117 FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~  132 (216)
                      .-+.+|++|.|.-...
T Consensus        84 ~~g~iD~lvnnAg~~~   99 (250)
T 3nyw_A           84 KYGAVDILVNAAAMFM   99 (250)
T ss_dssp             HHCCEEEEEECCCCCC
T ss_pred             hcCCCCEEEECCCcCC
Confidence            1147899999876543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.48  E-value=0.59  Score=34.32  Aligned_cols=73  Identities=18%  Similarity=0.146  Sum_probs=43.6

Q ss_pred             CCCEEEEecCCC-CHhH-HHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc-ccCcccEE
Q psy17460         49 DGKTVLDLGCGS-GILT-FGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV-FKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~Gt-G~~~-~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~~D~v  124 (216)
                      .+.+|+-+|+|. |... ..+... |. .|+++|.+++.++.++.    .   .+.++.+|..+.+..... ....+|+|
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~---g~~~~~gd~~~~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----E---GRNVISGDATDPDFWERILDTGHVKLV  109 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----T---TCCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----C---CCCEEEcCCCCHHHHHhccCCCCCCEE
Confidence            355788888763 3222 223344 54 79999999987766543    2   356788888322221111 12578999


Q ss_pred             EEcCC
Q psy17460        125 IMNPP  129 (216)
Q Consensus       125 i~npp  129 (216)
                      +...|
T Consensus       110 i~~~~  114 (183)
T 3c85_A          110 LLAMP  114 (183)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            98554

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=90.46  E-value=1.3  Score=34.36  Aligned_cols=81  Identities=19%  Similarity=0.156  Sum_probs=50.6

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh-CCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEF-EITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+... +. ++.++.+|+.+.+-....      .-
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGV-RVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            57888888876543   2233445565 8999999987776655544432 43 688999999332211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        84 g~id~lv~~Ag~~   96 (263)
T 3ai3_A           84 GGADILVNNAGTG   96 (263)
T ss_dssp             SSCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3789999987544

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=90.24  E-value=2.8  Score=32.85  Aligned_cols=83  Identities=18%  Similarity=0.151  Sum_probs=52.3

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCC------------hHHHHHHHHhhhHhCCCceEEEEeccccccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECD------------KEILDIFIDNKNEFEITNCDAILFEINEKSL  112 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~------------~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  112 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+            .+.++.....+...+. ++.++.+|+.+.+-
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~   85 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGR-RCISAKVDVKDRAA   85 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHH
Confidence            478899999977654   2334555665 89999986            4555555555544443 78999999933221


Q ss_pred             cccc------ccCcccEEEEcCCCCC
Q psy17460        113 DSSV------FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       113 ~~~~------~~~~~D~vi~npp~~~  132 (216)
                      ....      .-+.+|++|.|.-...
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~  111 (281)
T 3s55_A           86 LESFVAEAEDTLGGIDIAITNAGIST  111 (281)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCC
Confidence            1110      1147899999876543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=90.10  E-value=0.72  Score=38.48  Aligned_cols=45  Identities=24%  Similarity=0.271  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++||..|||. |.+++.+++. |+.+|+++|.+++.++.++.
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            456889999999865 6666666664 65689999999988887653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=89.99  E-value=1.1  Score=35.25  Aligned_cols=81  Identities=11%  Similarity=0.031  Sum_probs=51.7

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccc------c
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~------~  117 (216)
                      .++++|-.|++ |.++..    +++.|. +|++++.++...+.....+...+.. ++.++.+|+.+.+-....      .
T Consensus        31 ~~k~vlVTGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           31 RDRLALVTGAS-GGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            67888888865 444443    444565 8999999988777666655554432 688899999332211110      0


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|+||.|....
T Consensus       109 ~g~iD~vi~~Ag~~  122 (279)
T 1xg5_A          109 HSGVDICINNAGLA  122 (279)
T ss_dssp             HCCCSEEEECCCCC
T ss_pred             CCCCCEEEECCCCC
Confidence            13689999887654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=89.83  E-value=1.5  Score=34.03  Aligned_cols=80  Identities=13%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++.++.....+..    ++.++.+|+.+.+-...      ..-
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGP----RVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC----cceEEEccCCCHHHHHHHHHHHHHHh
Confidence            478899999977654   2344555665 899999998877666554421    78999999933221111      011


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|+++.|.-...
T Consensus        81 g~id~lv~nAg~~~   94 (255)
T 4eso_A           81 GAIDLLHINAGVSE   94 (255)
T ss_dssp             SSEEEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            47899998875543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=89.82  E-value=1.2  Score=34.68  Aligned_cols=84  Identities=7%  Similarity=0.103  Sum_probs=54.1

Q ss_pred             CCCCEEEEecCC--CCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------
Q psy17460         48 IDGKTVLDLGCG--SGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------  116 (216)
Q Consensus        48 ~~~~~vlD~g~G--tG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------  116 (216)
                      ..++++|-.|++  .|.   ++..+++.|. +|+.++.++...+.+.......+-.++.++.+|+.+.+-....      
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            468899999977  344   3445666676 8999998876666655555444433689999999332211110      


Q ss_pred             ccCcccEEEEcCCCCC
Q psy17460        117 FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~  132 (216)
                      .-+.+|.++.|.....
T Consensus        84 ~~g~id~li~~Ag~~~   99 (266)
T 3oig_A           84 QVGVIHGIAHCIAFAN   99 (266)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HhCCeeEEEEcccccc
Confidence            1147899999876543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=89.81  E-value=1.7  Score=34.02  Aligned_cols=83  Identities=14%  Similarity=0.161  Sum_probs=51.5

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhh-hHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNK-NEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+ ...+. ++.++.+|+.+.+-....      .
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEK   96 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467888888876543   2233445565 8999999987776655544 33343 688899999332211100      0


Q ss_pred             cCcccEEEEcCCCCC
Q psy17460        118 KQKVDTVIMNPPFGT  132 (216)
Q Consensus       118 ~~~~D~vi~npp~~~  132 (216)
                      -+.+|++|.|.-+..
T Consensus        97 ~g~iD~lvnnAg~~~  111 (267)
T 1vl8_A           97 FGKLDTVVNAAGINR  111 (267)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCcCC
Confidence            136899999876543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=89.80  E-value=1.2  Score=34.52  Aligned_cols=80  Identities=15%  Similarity=0.072  Sum_probs=50.0

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccc-------
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVF-------  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-------  117 (216)
                      .+++||-.|++ |.++..    +++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-.....       
T Consensus        13 ~~k~vlITGas-ggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           13 KAKTVLVTGGT-KGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMF   89 (266)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            57788877764 445444    444565 899999998877666555554443 6889999993322111100       


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      .+.+|++|.|.-..
T Consensus        90 ~~~id~li~~Ag~~  103 (266)
T 1xq1_A           90 GGKLDILINNLGAI  103 (266)
T ss_dssp             TTCCSEEEEECCC-
T ss_pred             CCCCcEEEECCCCC
Confidence            04689999886543

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=89.80  E-value=2.8  Score=32.86  Aligned_cols=82  Identities=20%  Similarity=0.291  Sum_probs=49.9

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc-----ccC
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV-----FKQ  119 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-----~~~  119 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.++...+.+. .+...+. ++.++.+|+.+.+-....     ..+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~-~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVAD-EIADGGG-SAEAVVADLADLEGAANVAEELAATR  105 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHH-HHHTTTC-EEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHH-HHHhcCC-cEEEEEecCCCHHHHHHHHHHHHhcC
Confidence            478899999977654   3344556676 8999996654433333 3333332 789999999332211110     014


Q ss_pred             cccEEEEcCCCCC
Q psy17460        120 KVDTVIMNPPFGT  132 (216)
Q Consensus       120 ~~D~vi~npp~~~  132 (216)
                      .+|++|.|.-...
T Consensus       106 ~iD~lv~nAg~~~  118 (273)
T 3uf0_A          106 RVDVLVNNAGIIA  118 (273)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCcEEEECCCCCC
Confidence            7899999876543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=89.69  E-value=1.5  Score=33.97  Aligned_cols=79  Identities=19%  Similarity=0.177  Sum_probs=49.9

Q ss_pred             CCCEEEEecCCCCHhHH----HHhHcCCCEEEEEeCChHHHHHHHHhhhHh--CCCceEEEEecccccccccccc-----
Q psy17460         49 DGKTVLDLGCGSGILTF----GSILLGADFCFALECDKEILDIFIDNKNEF--EITNCDAILFEINEKSLDSSVF-----  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~----~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~-----  117 (216)
                      .++++|-.|++.| ++.    .+++.|. +|+.++.+++..+.....+...  +. ++.++.+|+.+.+-.....     
T Consensus         6 ~~k~vlVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~   82 (260)
T 2z1n_A            6 QGKLAVVTAGSSG-LGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGA-QVDIVAGDIREPGDIDRLFEKARD   82 (260)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTC-CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCC-eEEEEEccCCCHHHHHHHHHHHHH
Confidence            5788888887654 443    3445565 8999999988776655554432  22 6888999993322111110     


Q ss_pred             -cCcccEEEEcCCCC
Q psy17460        118 -KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 -~~~~D~vi~npp~~  131 (216)
                       -+ +|++|.|....
T Consensus        83 ~~g-id~lv~~Ag~~   96 (260)
T 2z1n_A           83 LGG-ADILVYSTGGP   96 (260)
T ss_dssp             TTC-CSEEEECCCCC
T ss_pred             hcC-CCEEEECCCCC
Confidence             03 89999987654

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=89.68  E-value=0.7  Score=37.51  Aligned_cols=95  Identities=4%  Similarity=0.030  Sum_probs=59.1

Q ss_pred             CEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC---CceEEEEecccccccccccc-----cCccc
Q psy17460         51 KTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI---TNCDAILFEINEKSLDSSVF-----KQKVD  122 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~-----~~~~D  122 (216)
                      ..|+++|||.=+.+..+.......++=+| .|..+...+..+...+.   .+..++.+|+.+ ++.....     ....-
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt  181 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART  181 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence            57999999988876555432125888899 59999988888865432   268899999944 3321111     12355


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHhh
Q psy17460        123 TVIMNPPFGTRNCGIDLAFVQYAAD  147 (216)
Q Consensus       123 ~vi~npp~~~~~~~~~~~~~~~~l~  147 (216)
                      ++++-.-+++.........+.....
T Consensus       182 ~~i~Egvl~Yl~~~~~~~ll~~l~~  206 (310)
T 2uyo_A          182 AWLAEGLLMYLPATAQDGLFTEIGG  206 (310)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHH
T ss_pred             EEEEechHhhCCHHHHHHHHHHHHH
Confidence            6666555555533333445555544

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.65  E-value=1.6  Score=28.89  Aligned_cols=88  Identities=11%  Similarity=0.015  Sum_probs=53.1

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v  124 (216)
                      .+++|+-+|+  |.++..    +...|..+|+++|.+++..+.+.    .  . .+.++.+|..+.+.... .-..+|+|
T Consensus         4 ~~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~--~-~~~~~~~d~~~~~~~~~-~~~~~d~v   73 (118)
T 3ic5_A            4 MRWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R--M-GVATKQVDAKDEAGLAK-ALGGFDAV   73 (118)
T ss_dssp             TCEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T--T-TCEEEECCTTCHHHHHH-HTTTCSEE
T ss_pred             CcCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h--C-CCcEEEecCCCHHHHHH-HHcCCCEE
Confidence            3568999998  555544    33445458999999987776654    1  1 56778888832211111 11478999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        125 IMNPPFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       125 i~npp~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      |...|+..     .......+.+.+..
T Consensus        74 i~~~~~~~-----~~~~~~~~~~~g~~   95 (118)
T 3ic5_A           74 ISAAPFFL-----TPIIAKAAKAAGAH   95 (118)
T ss_dssp             EECSCGGG-----HHHHHHHHHHTTCE
T ss_pred             EECCCchh-----hHHHHHHHHHhCCC
Confidence            99887642     23344555554443

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=89.63  E-value=1.2  Score=34.62  Aligned_cols=80  Identities=11%  Similarity=0.124  Sum_probs=50.4

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++. .++..    +++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus        12 l~~k~vlVTGas~-gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~   88 (260)
T 2zat_A           12 LENKVALVTASTD-GIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGL-SVTGTVCHVGKAEDRERLVAMAVNL   88 (260)
T ss_dssp             TTTCEEEESSCSS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCc-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHH
Confidence            3678888887654 44433    445565 899999998877665555544443 688899998322211110      0


Q ss_pred             cCcccEEEEcCCC
Q psy17460        118 KQKVDTVIMNPPF  130 (216)
Q Consensus       118 ~~~~D~vi~npp~  130 (216)
                      -+.+|++|.|.-.
T Consensus        89 ~g~iD~lv~~Ag~  101 (260)
T 2zat_A           89 HGGVDILVSNAAV  101 (260)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1378999988654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=89.57  E-value=1  Score=34.57  Aligned_cols=80  Identities=23%  Similarity=0.236  Sum_probs=50.3

Q ss_pred             CCCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCcc
Q psy17460         47 DIDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKV  121 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~  121 (216)
                      ..++++||-.|++.|.   ++..+++.|. +|+.++.+++.++.....+..    ++.++.+|+.+.+-...  ..-..+
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~i   85 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKD----NYTIEVCNLANKEECSNLISKTSNL   85 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCS----SEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhcc----CccEEEcCCCCHHHHHHHHHhcCCC
Confidence            3468889988876554   2233555565 899999998877665554432    68899999833221111  011478


Q ss_pred             cEEEEcCCCC
Q psy17460        122 DTVIMNPPFG  131 (216)
Q Consensus       122 D~vi~npp~~  131 (216)
                      |++|.|.-..
T Consensus        86 d~li~~Ag~~   95 (249)
T 3f9i_A           86 DILVCNAGIT   95 (249)
T ss_dssp             SEEEECCC--
T ss_pred             CEEEECCCCC
Confidence            9999887654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=89.55  E-value=0.9  Score=36.01  Aligned_cols=80  Identities=15%  Similarity=0.047  Sum_probs=51.2

Q ss_pred             CCCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc--ccCcc
Q psy17460         47 DIDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV--FKQKV  121 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~~  121 (216)
                      ...++++|-.|++.|.   ++..+++.|. +|+.++.++...+.+...+   +- ++.++.+|+.+.+-....  .-+.+
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dl~d~~~v~~~~~~~~~i   87 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTM---AG-QVEVRELDLQDLSSVRRFADGVSGA   87 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTS---SS-EEEEEECCTTCHHHHHHHHHTCCCE
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---cC-CeeEEEcCCCCHHHHHHHHHhcCCC
Confidence            3578899988876544   2233455565 8999999988776655544   21 789999999332211111  11478


Q ss_pred             cEEEEcCCCC
Q psy17460        122 DTVIMNPPFG  131 (216)
Q Consensus       122 D~vi~npp~~  131 (216)
                      |++|.|.-..
T Consensus        88 D~lv~nAg~~   97 (291)
T 3rd5_A           88 DVLINNAGIM   97 (291)
T ss_dssp             EEEEECCCCC
T ss_pred             CEEEECCcCC
Confidence            9999886543

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=89.47  E-value=1.3  Score=34.12  Aligned_cols=80  Identities=18%  Similarity=0.162  Sum_probs=51.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+..    ++.++.+|+.+.+-....      .-
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGD----NGKGMALNVTNPESIEAVLKAITDEF   81 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcc----cceEEEEeCCCHHHHHHHHHHHHHHc
Confidence            468889988877654   2334555665 899999998877766555433    577889999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|++|.|.-...
T Consensus        82 g~iD~lv~nAg~~~   95 (248)
T 3op4_A           82 GGVDILVNNAGITR   95 (248)
T ss_dssp             CCCSEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            47899999876543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=89.46  E-value=2.1  Score=33.36  Aligned_cols=83  Identities=12%  Similarity=0.047  Sum_probs=57.3

Q ss_pred             CCCCEEEEecCCC--CH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------c
Q psy17460         48 IDGKTVLDLGCGS--GI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------V  116 (216)
Q Consensus        48 ~~~~~vlD~g~Gt--G~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~  116 (216)
                      .+|+++|-.|+++  |.   ++..+++.|+ +|+..+.+++..+.+...+...+-.++.++.+|+.+.+-...      .
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            5799999999643  43   3455667776 899999999888887777766553368899999933221110      0


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+..|+++.|..+.
T Consensus        83 ~~G~iD~lvnnAg~~   97 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFA   97 (256)
T ss_dssp             HHCCCSEEEECCCCC
T ss_pred             HhCCCCEEEeccccc
Confidence            115799999987654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.45  E-value=1.1  Score=37.92  Aligned_cols=69  Identities=14%  Similarity=0.060  Sum_probs=45.3

Q ss_pred             CEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         51 KTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ..|+-+|+|  .++..    +...| ..|+++|.|++.++.++..       .+.++.||+.+.+..........|+|++
T Consensus         5 ~~viIiG~G--r~G~~va~~L~~~g-~~vvvId~d~~~v~~~~~~-------g~~vi~GDat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            5 MRVIIAGFG--RFGQITGRLLLSSG-VKMVVLDHDPDHIETLRKF-------GMKVFYGDATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             CSEEEECCS--HHHHHHHHHHHHTT-CCEEEEECCHHHHHHHHHT-------TCCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred             CeEEEECCC--HHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHhC-------CCeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence            457778875  34433    33344 4899999999998887632       4678999994444332222367899987


Q ss_pred             cCC
Q psy17460        127 NPP  129 (216)
Q Consensus       127 npp  129 (216)
                      ..+
T Consensus        75 ~~~   77 (413)
T 3l9w_A           75 AID   77 (413)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            554

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=89.39  E-value=1.2  Score=34.50  Aligned_cols=79  Identities=13%  Similarity=0.119  Sum_probs=49.5

Q ss_pred             CCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460         50 GKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ  119 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~  119 (216)
                      ++++|-.|++.| ++..    +++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .-+
T Consensus         2 ~k~vlVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            2 KKVALVTGAGQG-IGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            457787876544 4433    445565 899999998877666555544443 688999999332211110      113


Q ss_pred             cccEEEEcCCCC
Q psy17460        120 KVDTVIMNPPFG  131 (216)
Q Consensus       120 ~~D~vi~npp~~  131 (216)
                      .+|++|.|.-..
T Consensus        79 ~id~lv~nAg~~   90 (256)
T 1geg_A           79 GFDVIVNNAGVA   90 (256)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            789999987543

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=89.33  E-value=1.1  Score=35.15  Aligned_cols=83  Identities=13%  Similarity=0.106  Sum_probs=52.7

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeC-ChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALEC-DKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~-~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+..+. +++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~v~~~~~~~~~~  103 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGG-EAFAVKADVSQESEVEALFAAVIER  103 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHH
Confidence            368888888876554   2334555665 8888887 67666666666655444 788999999332211110      1


Q ss_pred             cCcccEEEEcCCCCC
Q psy17460        118 KQKVDTVIMNPPFGT  132 (216)
Q Consensus       118 ~~~~D~vi~npp~~~  132 (216)
                      -+..|++|.|.-...
T Consensus       104 ~g~id~lv~nAg~~~  118 (269)
T 4dmm_A          104 WGRLDVLVNNAGITR  118 (269)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            147899999876543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=89.32  E-value=1  Score=37.10  Aligned_cols=45  Identities=16%  Similarity=0.287  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...++++||-.|+|. |.++..+++. |+.+|+++|.+++..+.++.
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            456789999999874 5566666654 65579999999988888764

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=89.32  E-value=1.1  Score=34.45  Aligned_cols=81  Identities=19%  Similarity=0.158  Sum_probs=50.9

Q ss_pred             CCCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..+++||-.|+ +|.++..++    +.|. +|++++.+++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus         9 ~~~~~vlVtGa-sggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A            9 LDGKCAIITGA-GAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             CTTCEEEETTT-TSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECC-ccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            36778887775 566555544    3454 899999998877665555544343 688999999322211110      0


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|+||.|....
T Consensus        86 ~~~~d~vi~~Ag~~   99 (255)
T 1fmc_A           86 LGKVDILVNNAGGG   99 (255)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             cCCCCEEEECCCCC
Confidence            13789999886544

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=89.28  E-value=0.52  Score=38.24  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEecC--CCCHhHHHHhHc-CCCEEEEEeCChHHHHHHH
Q psy17460         46 NDIDGKTVLDLGC--GSGILTFGSILL-GADFCFALECDKEILDIFI   89 (216)
Q Consensus        46 ~~~~~~~vlD~g~--GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~   89 (216)
                      ...+|++||-.|+  |.|..+..+++. |+ +|++++.+++..+.+.
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~  191 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLV  191 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            4568999999998  355566555554 55 9999999998877763

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=89.24  E-value=2.3  Score=33.53  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=52.9

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+++..+.+...+   +. ++.++.+|+.+.+-....      .-
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI---GC-GAAACRVDVSDEQQIIAMVDACVAAF  101 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CS-SCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CC-cceEEEecCCCHHHHHHHHHHHHHHc
Confidence            468899999887665   3344566676 8999999988776655544   32 688999999333211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|++|.|.-...
T Consensus       102 g~iD~lvnnAg~~~  115 (277)
T 3gvc_A          102 GGVDKLVANAGVVH  115 (277)
T ss_dssp             SSCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            47899999876543

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=89.22  E-value=1.4  Score=34.97  Aligned_cols=81  Identities=14%  Similarity=0.057  Sum_probs=51.0

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhH-----hCCCceEEEEeccccccccccc--
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNE-----FEITNCDAILFEINEKSLDSSV--  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~--  116 (216)
                      ..+++||-.|++ |.++..    +++.|. +|+.++.+++..+.....+..     .+. ++.++.+|+.+.+-....  
T Consensus        16 l~~k~vlVTGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~   92 (303)
T 1yxm_A           16 LQGQVAIVTGGA-TGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQA-RVIPIQCNIRNEEEVNNLVK   92 (303)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCC-CEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCc-cEEEEecCCCCHHHHHHHHH
Confidence            367889988865 555544    444565 899999998877666555543     122 689999999332211110  


Q ss_pred             ----ccCcccEEEEcCCCC
Q psy17460        117 ----FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ----~~~~~D~vi~npp~~  131 (216)
                          .-+.+|+||.|.-..
T Consensus        93 ~~~~~~g~id~li~~Ag~~  111 (303)
T 1yxm_A           93 STLDTFGKINFLVNNGGGQ  111 (303)
T ss_dssp             HHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence                013689999887643

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=89.17  E-value=2.4  Score=32.78  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=51.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+++..+.....+   +- ++.++.+|+.+.+-....      .-
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEI---GP-AAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CT-TEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CC-CceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            468889988866553   2333555565 8999999987766655444   22 688999999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|++|.|.-...
T Consensus        81 g~id~lv~~Ag~~~   94 (259)
T 4e6p_A           81 GGLDILVNNAALFD   94 (259)
T ss_dssp             SSCCEEEECCCCCC
T ss_pred             CCCCEEEECCCcCC
Confidence            37999999876543

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=89.12  E-value=1.2  Score=34.18  Aligned_cols=80  Identities=14%  Similarity=0.115  Sum_probs=49.7

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeC-ChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALEC-DKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~-~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      .++++|-.|++ |.++..    +++.|. +|+.++. +++..+.+...+...+. ++.++.+|+.+.+-....      .
T Consensus         3 ~~k~vlVTGas-~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            3 KGKVALVTGAS-RGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGS-DAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            56788877765 444444    444565 8999998 87776665555544343 688899999332211110      0


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|++|.|.-..
T Consensus        80 ~g~id~lv~nAg~~   93 (246)
T 2uvd_A           80 FGQVDILVNNAGVT   93 (246)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             cCCCCEEEECCCCC
Confidence            13789999987654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=89.07  E-value=2.2  Score=32.90  Aligned_cols=80  Identities=19%  Similarity=0.204  Sum_probs=52.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+   +. ++.++.+|+.+.+-....      .-
T Consensus         4 l~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (247)
T 3rwb_A            4 LAGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASI---GK-KARAIAADISDPGSVKALFAEIQALT   78 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CT-TEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CC-ceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            468899999977654   2344555665 8999999987776655444   32 688999999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|++|.|.-...
T Consensus        79 g~id~lv~nAg~~~   92 (247)
T 3rwb_A           79 GGIDILVNNASIVP   92 (247)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            47899998876543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=89.03  E-value=3.7  Score=32.26  Aligned_cols=80  Identities=18%  Similarity=0.222  Sum_probs=51.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+++..+......   +. ++.++.+|+.+.+-....      .-
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEI---GS-KAFGVRVDVSSAKDAESMVEKTTAKW   99 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CT-TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CC-ceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            468889998877654   2334555665 8999999987766554442   22 688999999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|++|.|.-...
T Consensus       100 g~iD~lv~nAg~~~  113 (277)
T 4dqx_A          100 GRVDVLVNNAGFGT  113 (277)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCcCC
Confidence            37899999876543

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=89.00  E-value=1.6  Score=34.02  Aligned_cols=83  Identities=19%  Similarity=0.128  Sum_probs=53.3

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc--cccCcc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS--VFKQKV  121 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~--~~~~~~  121 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...... .+.++.+|+.+.+....  ..-+.+
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i   86 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV   86 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence            467888888876553   2333555565 8999999998877766666554321 67888999933221111  011478


Q ss_pred             cEEEEcCCCC
Q psy17460        122 DTVIMNPPFG  131 (216)
Q Consensus       122 D~vi~npp~~  131 (216)
                      |++|.|.-..
T Consensus        87 d~lv~nAg~~   96 (267)
T 3t4x_A           87 DILINNLGIF   96 (267)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999887544

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=88.91  E-value=1.9  Score=34.45  Aligned_cols=128  Identities=14%  Similarity=0.181  Sum_probs=66.0

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCCCH-h--HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc
Q psy17460         37 ILHTIQNNYNDIDGKTVLDLGCGSGI-L--TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD  113 (216)
Q Consensus        37 ~~~~~~~~~~~~~~~~vlD~g~GtG~-~--~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  113 (216)
                      ++..+........+++++-+|+| |. .  +..++..|..+|+.++.+++..+.....+..... .+.+...+.  .++.
T Consensus       114 ~~~~l~~~~~~l~~k~vlVlGaG-G~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~-~~~i~~~~~--~~l~  189 (283)
T 3jyo_A          114 FGRGMEEGLPNAKLDSVVQVGAG-GVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVG-REAVVGVDA--RGIE  189 (283)
T ss_dssp             HHHHHHHHCTTCCCSEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHT-SCCEEEECS--TTHH
T ss_pred             HHHHHHHhCcCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcC-CceEEEcCH--HHHH
Confidence            33334433234578899999997 32 2  2335556777899999998776655444443221 233333333  2221


Q ss_pred             cccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460        114 SSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus       114 ~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~  171 (216)
                      ...  ..+|+||..-|.+..... ........+.....+|.+.+....-.+++.+++.
T Consensus       190 ~~l--~~~DiVInaTp~Gm~~~~-~~pi~~~~l~~~~~v~DlvY~P~~T~ll~~A~~~  244 (283)
T 3jyo_A          190 DVI--AAADGVVNATPMGMPAHP-GTAFDVSCLTKDHWVGDVVYMPIETELLKAARAL  244 (283)
T ss_dssp             HHH--HHSSEEEECSSTTSTTSC-SCSSCGGGCCTTCEEEECCCSSSSCHHHHHHHHH
T ss_pred             HHH--hcCCEEEECCCCCCCCCC-CCCCCHHHhCCCCEEEEecCCCCCCHHHHHHHHC
Confidence            111  468999977665433110 0000011122222267666655555666666554

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=88.86  E-value=1.7  Score=34.61  Aligned_cols=81  Identities=10%  Similarity=0.061  Sum_probs=52.6

Q ss_pred             CCCCEEEEecCCC--CH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------
Q psy17460         48 IDGKTVLDLGCGS--GI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------  116 (216)
Q Consensus        48 ~~~~~vlD~g~Gt--G~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------  116 (216)
                      ..++++|-.|++.  |.   ++..+++.|. +|+.++.++...+.+.......+  .+.++.+|+.+.+-....      
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~  104 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAE  104 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHH
Confidence            4688999999864  33   3444666676 89999999876665555555444  468899999332211110      


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+.+|++|.|.-..
T Consensus       105 ~~g~iD~lVnnAG~~  119 (296)
T 3k31_A          105 EWGSLDFVVHAVAFS  119 (296)
T ss_dssp             HHSCCSEEEECCCCC
T ss_pred             HcCCCCEEEECCCcC
Confidence            114789999987654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=88.65  E-value=1.3  Score=34.48  Aligned_cols=81  Identities=11%  Similarity=0.038  Sum_probs=51.6

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEE-eCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFAL-ECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~i-D~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+ +.+++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGR-SALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTS-CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            468899999977664   2344556676 77777 7777766666665554443 688999999332211110      1


Q ss_pred             cCcccEEEEcCCC
Q psy17460        118 KQKVDTVIMNPPF  130 (216)
Q Consensus       118 ~~~~D~vi~npp~  130 (216)
                      -+..|++|.|.-.
T Consensus        84 ~g~id~lv~nAg~   96 (259)
T 3edm_A           84 FGEIHGLVHVAGG   96 (259)
T ss_dssp             HCSEEEEEECCCC
T ss_pred             hCCCCEEEECCCc
Confidence            1478999988743

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=88.49  E-value=1.3  Score=34.94  Aligned_cols=82  Identities=12%  Similarity=0.054  Sum_probs=52.1

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH-hCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNE-FEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+.+..+.+...+.. .+. ++.++.+|+.+.+-....      .
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGR-RCLPLSMDVRAPPAVMAAVDQALKE  102 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSS-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            368899999876554   2233455565 899999998776665554432 233 789999999332211110      1


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|++|.|.-..
T Consensus       103 ~g~id~lv~nAg~~  116 (277)
T 4fc7_A          103 FGRIDILINCAAGN  116 (277)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             cCCCCEEEECCcCC
Confidence            14789999987543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=88.46  E-value=1  Score=37.23  Aligned_cols=121  Identities=11%  Similarity=0.027  Sum_probs=71.8

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      +..+|+-+||  |..+..++..  ....|...|++.+.++.++.        .+..+..|+.+.+-... .-...|+|+.
T Consensus        15 ~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~--------~~~~~~~d~~d~~~l~~-~~~~~DvVi~   83 (365)
T 3abi_A           15 RHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE--------FATPLKVDASNFDKLVE-VMKEFELVIG   83 (365)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT--------TSEEEECCTTCHHHHHH-HHTTCSEEEE
T ss_pred             CccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc--------cCCcEEEecCCHHHHHH-HHhCCCEEEE
Confidence            3458999998  4554443332  12589999999877766532        34556677732221111 1157899997


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCceEEEee-CcchHHHHHHHHHhcCccceeeeeeeecCCCc
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHK-TSTRESILKKIQAFKNVEQVDVIAEMKYDLNQ  189 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  189 (216)
                      ..|+..     .....+.+++.+.+...+.. ......+.+.+.+-    +..++.+.|+..+-
T Consensus        84 ~~p~~~-----~~~v~~~~~~~g~~yvD~s~~~~~~~~l~~~a~~~----g~~~i~~~G~~PG~  138 (365)
T 3abi_A           84 ALPGFL-----GFKSIKAAIKSKVDMVDVSFMPENPLELRDEAEKA----QVTIVFDAGFAPGL  138 (365)
T ss_dssp             CCCGGG-----HHHHHHHHHHHTCEEEECCCCSSCGGGGHHHHHHT----TCEEECCCBTTTBH
T ss_pred             ecCCcc-----cchHHHHHHhcCcceEeeeccchhhhhhhhhhccC----CceeeecCCCCCch
Confidence            765431     23467778887776444432 22344555555554    66778888877654

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=88.44  E-value=1.4  Score=34.61  Aligned_cols=80  Identities=13%  Similarity=0.120  Sum_probs=50.7

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++.++......   +. ++.++.+|+.+.+-....      .-
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADL---GK-DVFVFSANLSDRKSIKQLAEVAEREM   99 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CS-SEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CC-ceEEEEeecCCHHHHHHHHHHHHHHc
Confidence            468889988876554   2233555665 8999999987766654432   32 689999999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|++|.|.-...
T Consensus       100 g~iD~lvnnAg~~~  113 (266)
T 3grp_A          100 EGIDILVNNAGITR  113 (266)
T ss_dssp             TSCCEEEECCCCC-
T ss_pred             CCCCEEEECCCCCC
Confidence            47899999876543

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=88.36  E-value=1.7  Score=34.26  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=49.7

Q ss_pred             CCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .+++||-.|++ |.++..++    +.| .+|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .-
T Consensus        43 ~~k~vlITGas-ggIG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           43 ENKVALVTGAG-RGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEH  119 (285)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHHHhcCC-ceeEEECCCCCHHHHHHHHHHHHHhc
Confidence            46788888765 55554444    344 4888899888776665555544343 688999999332211110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|+||.|.-..
T Consensus       120 ~~id~li~~Ag~~  132 (285)
T 2c07_A          120 KNVDILVNNAGIT  132 (285)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4689999987554

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=88.32  E-value=1.4  Score=34.69  Aligned_cols=83  Identities=16%  Similarity=0.133  Sum_probs=51.1

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEeccccccccccc------
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSV------  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~------  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...+..  ++.++.+|+.+.+-....      
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   82 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence            367788888865543   2233445565 8999999988777665555443321  588999999332211110      


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+.+|++|.|.-..
T Consensus        83 ~~g~iD~lv~nAg~~   97 (280)
T 1xkq_A           83 QFGKIDVLVNNAGAA   97 (280)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             hcCCCCEEEECCCCC
Confidence            013689999987543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=88.31  E-value=0.82  Score=36.06  Aligned_cols=81  Identities=20%  Similarity=0.317  Sum_probs=50.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...+  ++.++.+|+.+.+-....      .-
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYG--DCQAIPADLSSEAGARRLAQALGELS  103 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSS--CEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            367889988876543   2233445565 89999999877766555544333  678888998332211110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus       104 g~iD~lvnnAg~~  116 (276)
T 2b4q_A          104 ARLDILVNNAGTS  116 (276)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4789999987543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=88.29  E-value=1.7  Score=34.30  Aligned_cols=84  Identities=14%  Similarity=0.025  Sum_probs=52.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeC-ChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALEC-DKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~-~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++. +++..+.....+....-.++.++.+|+.+.+-....      .
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            367889999976654   2344555666 8999998 666666555555433222788999999332211110      1


Q ss_pred             cCcccEEEEcCCCCC
Q psy17460        118 KQKVDTVIMNPPFGT  132 (216)
Q Consensus       118 ~~~~D~vi~npp~~~  132 (216)
                      -+.+|++|.|.-...
T Consensus       102 ~g~iD~lv~nAg~~~  116 (281)
T 3v2h_A          102 FGGADILVNNAGVQF  116 (281)
T ss_dssp             TSSCSEEEECCCCCC
T ss_pred             CCCCCEEEECCCCCC
Confidence            147899999876543

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=88.27  E-value=2.2  Score=33.78  Aligned_cols=83  Identities=14%  Similarity=0.050  Sum_probs=53.8

Q ss_pred             CCCEEEEecCCCCHh---HHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccccccc------c
Q psy17460         49 DGKTVLDLGCGSGIL---TFGSILLGA--DFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSS------V  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~---~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~------~  116 (216)
                      .++++|-.|++.|.=   +..+++.|.  ..|+.++.+++.++.+...+....- .++.++.+|+.+.+-...      .
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            678999999765542   233444444  3899999999888877776655321 168899999943332111      0


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+.+|++|.|.-..
T Consensus       112 ~~g~iD~lVnnAG~~  126 (287)
T 3rku_A          112 EFKDIDILVNNAGKA  126 (287)
T ss_dssp             GGCSCCEEEECCCCC
T ss_pred             hcCCCCEEEECCCcC
Confidence            114789999987644

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=88.22  E-value=7.8  Score=30.21  Aligned_cols=83  Identities=16%  Similarity=0.085  Sum_probs=51.6

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCC-hHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECD-KEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~-~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+ .+..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHH
Confidence            478899999987654   2344556666 78888654 4555555555554443 688999999332211110      1


Q ss_pred             cCcccEEEEcCCCCC
Q psy17460        118 KQKVDTVIMNPPFGT  132 (216)
Q Consensus       118 ~~~~D~vi~npp~~~  132 (216)
                      -+..|++|.|.-...
T Consensus       107 ~g~iD~lvnnAg~~~  121 (271)
T 3v2g_A          107 LGGLDILVNSAGIWH  121 (271)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCcEEEECCCCCC
Confidence            137899999876543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=88.07  E-value=1.9  Score=29.48  Aligned_cols=72  Identities=14%  Similarity=0.031  Sum_probs=42.0

Q ss_pred             CCEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         50 GKTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      +.+|+-+|+  |.++..+    ...| .+|+++|.+++.++.+....      .+.++.+|..+.+.........+|+|+
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~~------~~~~~~~d~~~~~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI------DALVINGDCTKIKTLEDAGIEDADMYI   74 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC------SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHhc------CcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence            457888877  5554433    3344 48999999987766544321      345777887222211111115789999


Q ss_pred             EcCCC
Q psy17460        126 MNPPF  130 (216)
Q Consensus       126 ~npp~  130 (216)
                      ...|.
T Consensus        75 ~~~~~   79 (140)
T 1lss_A           75 AVTGK   79 (140)
T ss_dssp             ECCSC
T ss_pred             EeeCC
Confidence            87663

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=88.06  E-value=3.9  Score=32.28  Aligned_cols=58  Identities=9%  Similarity=-0.077  Sum_probs=40.0

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEe-CChHHHHHHHHhhh-HhCCCceEEEEecccc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALE-CDKEILDIFIDNKN-EFEITNCDAILFEINE  109 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD-~~~~~~~~~~~~~~-~~~~~~v~~~~~d~~~  109 (216)
                      .++++|-.|++.| ++..    +++.|. +|+.++ .+++..+.+...+. ..+. ++.++.+|+.+
T Consensus         8 ~~k~~lVTGas~G-IG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~   71 (291)
T 1e7w_A            8 TVPVALVTGAAKR-LGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPN-SAITVQADLSN   71 (291)
T ss_dssp             CCCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTT-CEEEEECCCSS
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcCC-eeEEEEeecCC
Confidence            6778888887655 4433    445565 899999 99887776665554 3332 68899999943

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=88.03  E-value=1.2  Score=34.09  Aligned_cols=80  Identities=11%  Similarity=0.043  Sum_probs=49.2

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      .++++||-.|++ |.++..    +++.|. +|++++.+++..+.....+...  .++.++.+|+.+.+-....      .
T Consensus         4 ~~~k~vlVtGas-ggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            4 LDGKVAIITGGT-LGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTCEEEETTTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcc--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            367788877764 455444    444565 8999999987766554444322  2689999999332211110      0


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|++|.|....
T Consensus        80 ~~~id~li~~Ag~~   93 (251)
T 1zk4_A           80 FGPVSTLVNNAGIA   93 (251)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             hCCCCEEEECCCCC
Confidence            13689999987554

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=87.86  E-value=2.2  Score=32.54  Aligned_cols=80  Identities=10%  Similarity=0.128  Sum_probs=50.0

Q ss_pred             CCCEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhH-hCCCceEEEEeccccccccccc------c
Q psy17460         49 DGKTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNE-FEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      .++++|-.|+ +|.++..+    ++.|. +|++++.+++..+.....+.. .+. ++.++.+|+.+.+-....      .
T Consensus         6 ~~~~vlVtGa-sggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            6 QGKVSLVTGS-TRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGV-KAHGVEMNLLSEESINKAFEEIYNL   82 (248)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCC-ceEEEEccCCCHHHHHHHHHHHHHh
Confidence            5778887776 45555444    44454 899999998777665554433 233 688999999322211110      0


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|+||.|....
T Consensus        83 ~~~~d~vi~~Ag~~   96 (248)
T 2pnf_A           83 VDGIDILVNNAGIT   96 (248)
T ss_dssp             SSCCSEEEECCCCC
T ss_pred             cCCCCEEEECCCCC
Confidence            13789999987654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=87.76  E-value=1.5  Score=36.48  Aligned_cols=45  Identities=24%  Similarity=0.208  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++||-.|+|. |.+++.+++. |+..|+++|.+++.++.++.
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            456789999999764 5566666664 55689999999988888754

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=87.64  E-value=2.5  Score=33.06  Aligned_cols=81  Identities=12%  Similarity=0.112  Sum_probs=54.3

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ  119 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~  119 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+++.++.+...+...+. ++.++.+|+.+.+-....      .-+
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGG-TALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            56788888877654   2334555665 899999999888877777665554 788999999332211110      114


Q ss_pred             cccEEEEcCCCC
Q psy17460        120 KVDTVIMNPPFG  131 (216)
Q Consensus       120 ~~D~vi~npp~~  131 (216)
                      ..|++|.|.-..
T Consensus        81 ~iD~lVnnAG~~   92 (264)
T 3tfo_A           81 RIDVLVNNAGVM   92 (264)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            789999987554

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=87.51  E-value=1.3  Score=34.17  Aligned_cols=80  Identities=9%  Similarity=-0.007  Sum_probs=50.6

Q ss_pred             CCCEEEEecCCCCHhHHHH----hH-cCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         49 DGKTVLDLGCGSGILTFGS----IL-LGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~----~~-~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ++++||-.| |+|.++..+    ++ .|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHh
Confidence            467788777 456655443    44 454 899999998877766666654443 688999999332211110      0


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|+||.|.-..
T Consensus        80 ~g~id~li~~Ag~~   93 (276)
T 1wma_A           80 YGGLDVLVNNAGIA   93 (276)
T ss_dssp             HSSEEEEEECCCCC
T ss_pred             cCCCCEEEECCccc
Confidence            13789999886543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=87.45  E-value=2.5  Score=33.27  Aligned_cols=82  Identities=11%  Similarity=0.075  Sum_probs=53.4

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ  119 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~  119 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...+. ++.++.+|+.+.+-....      .-+
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGH-DVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            57789998876654   2344555665 899999999888777766655444 789999999332211110      114


Q ss_pred             cccEEEEcCCCCC
Q psy17460        120 KVDTVIMNPPFGT  132 (216)
Q Consensus       120 ~~D~vi~npp~~~  132 (216)
                      .+|++|.|.-...
T Consensus       101 ~id~lv~nAg~~~  113 (279)
T 3sju_A          101 PIGILVNSAGRNG  113 (279)
T ss_dssp             SCCEEEECCCCCC
T ss_pred             CCcEEEECCCCCC
Confidence            7899999876543

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=87.42  E-value=1.7  Score=34.59  Aligned_cols=81  Identities=17%  Similarity=0.181  Sum_probs=51.2

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEeccccccccccc------
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSV------  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~------  116 (216)
                      .++++|-.|++.| ++..    +++.|. +|+.++.+++..+.....+...+..  ++.++.+|+.+.+-....      
T Consensus        25 ~~k~vlVTGas~g-IG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           25 SGKSVIITGSSNG-IGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            6788888886544 4433    445565 8999999988777665555443321  588999999332211110      


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+.+|++|.|.-..
T Consensus       103 ~~g~iD~lvnnAG~~  117 (297)
T 1xhl_A          103 KFGKIDILVNNAGAN  117 (297)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             hcCCCCEEEECCCcC
Confidence            013789999987543

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=87.26  E-value=6.3  Score=30.08  Aligned_cols=82  Identities=15%  Similarity=0.112  Sum_probs=49.5

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeC-ChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALEC-DKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~-~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++. +++..+.....+...+. ++.++.+|+.+.+-....      .-
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGV-DSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46778877766543   2233455565 7888876 55666666555555444 688999999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|++|.|.-...
T Consensus        81 g~id~lv~nAg~~~   94 (246)
T 3osu_A           81 GSLDVLVNNAGITR   94 (246)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            37899999876543

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=87.23  E-value=1.4  Score=34.09  Aligned_cols=80  Identities=13%  Similarity=0.034  Sum_probs=48.2

Q ss_pred             CCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHH--HHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         50 GKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEI--LDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        50 ~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~--~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ++++|-.|++.|.   ++..+++.|. +|+.++.+++.  .+.....+...+. ++.++.+|+.+.+-....      .-
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQ-KAVFVGLDVTDKANFDSAIDEAAEKL   79 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4678888866543   2233455565 89999998776  5544444443332 688999999332211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        80 g~iD~lv~nAg~~   92 (258)
T 3a28_C           80 GGFDVLVNNAGIA   92 (258)
T ss_dssp             TCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3789999987654

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=87.16  E-value=3.8  Score=32.24  Aligned_cols=83  Identities=17%  Similarity=0.085  Sum_probs=51.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChH-------HHHHHHHhhhHhCCCceEEEEeccccccccccc-
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKE-------ILDIFIDNKNEFEITNCDAILFEINEKSLDSSV-  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~-------~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++       .++.....+...+. ++.++.+|+.+.+-.... 
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGG-QALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTS-EEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHH
Confidence            367889999977664   2334555565 8999998875       34444444444443 789999999332211110 


Q ss_pred             -----ccCcccEEEEcCCCCC
Q psy17460        117 -----FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       117 -----~~~~~D~vi~npp~~~  132 (216)
                           .-+..|++|.|.-...
T Consensus        85 ~~~~~~~g~id~lvnnAg~~~  105 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASAIN  105 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCCC
Confidence                 1147899999876543

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=87.16  E-value=1  Score=34.55  Aligned_cols=79  Identities=16%  Similarity=0.027  Sum_probs=48.7

Q ss_pred             CCCEEEEecCCCCHhHHHH----hHcCCCEEEEEeCC-hHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         49 DGKTVLDLGCGSGILTFGS----ILLGADFCFALECD-KEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~-~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      .+++||-.|+ +|.++..+    ++.|. +|++++.+ ++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus         6 ~~k~vlVTGa-sggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            6 KGKRVLITGS-SQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGG-DAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHH
Confidence            5778887775 45555444    44455 89999988 6655555544444343 789999999332211110      0


Q ss_pred             cCcccEEEEcCCC
Q psy17460        118 KQKVDTVIMNPPF  130 (216)
Q Consensus       118 ~~~~D~vi~npp~  130 (216)
                      -+.+|+||.|...
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            0378999998764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=87.03  E-value=0.98  Score=36.45  Aligned_cols=83  Identities=16%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCC----------hHHHHHHHHhhhHhCCCceEEEEeccccccccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECD----------KEILDIFIDNKNEFEITNCDAILFEINEKSLDS  114 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~----------~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  114 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+          .+..+.....+...+. ++.++.+|+.+.+-..
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~  102 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGG-EAVADGSNVADWDQAA  102 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTC-EEEEECCCTTSHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHH
Confidence            478889988876554   2344555665 89999987          5556655555555443 7889999993322111


Q ss_pred             cc------ccCcccEEEEcCCCCC
Q psy17460        115 SV------FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       115 ~~------~~~~~D~vi~npp~~~  132 (216)
                      ..      .-+.+|++|.|.-...
T Consensus       103 ~~~~~~~~~~g~iD~lv~nAg~~~  126 (322)
T 3qlj_A          103 GLIQTAVETFGGLDVLVNNAGIVR  126 (322)
T ss_dssp             HHHHHHHHHHSCCCEEECCCCCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCC
Confidence            10      1137899998876543

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=87.02  E-value=1.2  Score=34.65  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=48.9

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHH-HHHHHHhhhHh-CCCceEEEEeccccccccccc------
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEI-LDIFIDNKNEF-EITNCDAILFEINEKSLDSSV------  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~-~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~------  116 (216)
                      .++++|-.|++.| ++..    +++.|. +|+.++.+++. .+.....+... +. ++.++.+|+.+.+-....      
T Consensus         3 ~~k~vlVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~   79 (260)
T 1x1t_A            3 KGKVAVVTGSTSG-IGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGV-KVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTS-CEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence            5678888876544 4433    445565 89999998776 55554444332 33 688899999332211110      


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+.+|++|.|.-..
T Consensus        80 ~~g~iD~lv~~Ag~~   94 (260)
T 1x1t_A           80 QMGRIDILVNNAGIQ   94 (260)
T ss_dssp             HHSCCSEEEECCCCC
T ss_pred             hcCCCCEEEECCCCC
Confidence            013689999987544

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=86.99  E-value=1.7  Score=33.46  Aligned_cols=80  Identities=15%  Similarity=0.023  Sum_probs=49.5

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeC-ChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALEC-DKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~-~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      .+++||-.|++ |.++..    ++..|. +|+.++. +++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus         6 ~~k~vlITGas-ggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            6 EGKVVVITGSS-TGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHH
Confidence            57788877755 555544    444555 8999998 77766655555544343 688999999332211110      0


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|++|.|....
T Consensus        83 ~g~id~li~~Ag~~   96 (261)
T 1gee_A           83 FGKLDVMINNAGLE   96 (261)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             cCCCCEEEECCCCC
Confidence            13689999886544

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=86.98  E-value=2.5  Score=32.80  Aligned_cols=79  Identities=11%  Similarity=0.062  Sum_probs=49.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+..    ++.++.+|+.+.+-....      .-
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~D~~~~~~v~~~~~~~~~~~   79 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELAD----AARYVHLDVTQPAQWKAAVDTAVTAF   79 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGG----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhc----CceEEEecCCCHHHHHHHHHHHHHHc
Confidence            367888888866543   2233445565 899999998776655444332    578899999332211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|....
T Consensus        80 g~iD~lv~~Ag~~   92 (260)
T 1nff_A           80 GGLHVLVNNAGIL   92 (260)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3789999987654

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=86.94  E-value=1.8  Score=35.53  Aligned_cols=42  Identities=14%  Similarity=0.109  Sum_probs=32.7

Q ss_pred             CCCEEEEec-CC-CCHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         49 DGKTVLDLG-CG-SGILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        49 ~~~~vlD~g-~G-tG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      +|++||-.| +| .|.+++.+++. +..+|++++.+++..+.++.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~  215 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS  215 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence            678999998 44 46677777875 55699999999988887754

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=86.75  E-value=1.6  Score=37.06  Aligned_cols=71  Identities=18%  Similarity=0.311  Sum_probs=44.2

Q ss_pred             CccccCCHHHH----HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc----C--CCEEEEEeCChHHHHHHHHhhh
Q psy17460         24 LEQYHTPPHLA----ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL----G--ADFCFALECDKEILDIFIDNKN   93 (216)
Q Consensus        24 ~~~~~t~~~~~----~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~----~--~~~v~~iD~~~~~~~~~~~~~~   93 (216)
                      -+.|.|..++.    +.+...+.........-.|+|+|+|+|.++..++..    +  +.+++.||+|+.+.+.-++.+.
T Consensus       108 ~GDFiTAPeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          108 GSDFVTAPELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             --CCSSCGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCCccCchhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            34688876543    223222222111112468999999999998765542    2  2589999999998877777665


Q ss_pred             H
Q psy17460         94 E   94 (216)
Q Consensus        94 ~   94 (216)
                      .
T Consensus       188 ~  188 (432)
T 4f3n_A          188 A  188 (432)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=86.73  E-value=4.9  Score=32.42  Aligned_cols=58  Identities=9%  Similarity=-0.077  Sum_probs=39.4

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEe-CChHHHHHHHHhhh-HhCCCceEEEEecccc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALE-CDKEILDIFIDNKN-EFEITNCDAILFEINE  109 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD-~~~~~~~~~~~~~~-~~~~~~v~~~~~d~~~  109 (216)
                      .++++|-.|++.| ++..    ++..|. +|+.++ .+++..+.+...+. ..+. ++.++.+|+.+
T Consensus        45 ~~k~~lVTGas~G-IG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~d  108 (328)
T 2qhx_A           45 TVPVALVTGAAKR-LGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPN-SAITVQADLSN  108 (328)
T ss_dssp             CCCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTT-CEEEEECCCSS
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCC-eEEEEEeeCCC
Confidence            5778887776644 4433    445565 899999 99887776665554 3332 68899999943

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=86.63  E-value=1.2  Score=34.80  Aligned_cols=81  Identities=14%  Similarity=0.090  Sum_probs=49.1

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..+++||-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....      .-
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGV-HSKAYKCNISDPKSVEETISQQEKDF  109 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeecCCHHHHHHHHHHHHHHh
Confidence            367888888876554   2333555565 899999887655544444443343 688999999332211110      01


Q ss_pred             CcccEEEEcCCC
Q psy17460        119 QKVDTVIMNPPF  130 (216)
Q Consensus       119 ~~~D~vi~npp~  130 (216)
                      +.+|++|.|...
T Consensus       110 g~id~li~~Ag~  121 (279)
T 3ctm_A          110 GTIDVFVANAGV  121 (279)
T ss_dssp             SCCSEEEECGGG
T ss_pred             CCCCEEEECCcc
Confidence            358999988643

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=86.59  E-value=3.2  Score=32.29  Aligned_cols=80  Identities=6%  Similarity=-0.077  Sum_probs=49.4

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeC-ChHHHHHHHHhhhHh-CCCceEEEEeccccc----cccccc--
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALEC-DKEILDIFIDNKNEF-EITNCDAILFEINEK----SLDSSV--  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~-~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~----~~~~~~--  116 (216)
                      .++++|-.|++. .++..    +++.|. +|+.++. +++..+.+...+... +. ++.++.+|+.+.    +-....  
T Consensus        10 ~~k~~lVTGas~-gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~   86 (276)
T 1mxh_A           10 ECPAAVITGGAR-RIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAG-SAVLCKGDLSLSSSLLDCCEDIID   86 (276)
T ss_dssp             -CCEEEETTCSS-HHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTT-CEEEEECCCSSSTTHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCC-ceEEEeccCCCccccHHHHHHHHH
Confidence            567888777654 44444    444565 8999999 887776665555443 32 688999999433    111000  


Q ss_pred             ----ccCcccEEEEcCCCC
Q psy17460        117 ----FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ----~~~~~D~vi~npp~~  131 (216)
                          .-+.+|++|.|.-..
T Consensus        87 ~~~~~~g~id~lv~nAg~~  105 (276)
T 1mxh_A           87 CSFRAFGRCDVLVNNASAY  105 (276)
T ss_dssp             HHHHHHSCCCEEEECCCCC
T ss_pred             HHHHhcCCCCEEEECCCCC
Confidence                013689999987543

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=86.58  E-value=5.6  Score=30.96  Aligned_cols=76  Identities=17%  Similarity=0.181  Sum_probs=49.8

Q ss_pred             CEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccCcc
Q psy17460         51 KTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQKV  121 (216)
Q Consensus        51 ~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~~  121 (216)
                      ++||-.|++.|.   ++..+++.|+ +|+.+|.+++..+...+.    + .++..+.+|+.+.+-...      ..-+..
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~----~-~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKE----R-PNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTT----C-TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh----c-CCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            678888888776   3445666776 899999998766544332    1 268889999933221111      011578


Q ss_pred             cEEEEcCCCCC
Q psy17460        122 DTVIMNPPFGT  132 (216)
Q Consensus       122 D~vi~npp~~~  132 (216)
                      |+++.|.-...
T Consensus        77 DiLVNNAG~~~   87 (247)
T 3ged_A           77 DVLVNNACRGS   87 (247)
T ss_dssp             CEEEECCCCCC
T ss_pred             CEEEECCCCCC
Confidence            99998875443

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=86.40  E-value=1.8  Score=33.05  Aligned_cols=80  Identities=11%  Similarity=-0.010  Sum_probs=49.1

Q ss_pred             CCEEEEecCCCCHhHHHH----hHcCCC------EEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc---
Q psy17460         50 GKTVLDLGCGSGILTFGS----ILLGAD------FCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV---  116 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~----~~~~~~------~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---  116 (216)
                      +++||-.|+ +|.++..+    ++.|..      +|+.++.+++..+.....+...+. ++.++.+|+.+.+-....   
T Consensus         2 ~k~vlITGa-sggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~   79 (244)
T 2bd0_A            2 KHILLITGA-GKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTH   79 (244)
T ss_dssp             CEEEEEETT-TSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECC-CChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCC-eeeEEEecCCCHHHHHHHHHH
Confidence            456777775 45555444    444542      899999998877666555543333 689999999332211110   


Q ss_pred             ---ccCcccEEEEcCCCC
Q psy17460        117 ---FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ---~~~~~D~vi~npp~~  131 (216)
                         .-+.+|++|.|.-..
T Consensus        80 ~~~~~g~id~li~~Ag~~   97 (244)
T 2bd0_A           80 IVERYGHIDCLVNNAGVG   97 (244)
T ss_dssp             HHHHTSCCSEEEECCCCC
T ss_pred             HHHhCCCCCEEEEcCCcC
Confidence               013689999887544

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=86.31  E-value=2.4  Score=34.32  Aligned_cols=44  Identities=20%  Similarity=0.215  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++||-.|+|. |..+..+++. |+ +|+++|.+++..+.++.
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH
Confidence            456889999999874 6666666664 55 99999999988887755

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=86.24  E-value=1.3  Score=34.88  Aligned_cols=78  Identities=14%  Similarity=0.107  Sum_probs=49.7

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ  119 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~  119 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+++.++.....+.    .++.++.+|+.+.+-....      .-+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  101 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIG----DDALCVPTDVTDPDSVRALFTATVEKFG  101 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHT----SCCEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            67788888876554   2334555665 89999999887766555442    2688999999332211110      114


Q ss_pred             cccEEEEcCCCC
Q psy17460        120 KVDTVIMNPPFG  131 (216)
Q Consensus       120 ~~D~vi~npp~~  131 (216)
                      .+|++|.|.-..
T Consensus       102 ~iD~lVnnAg~~  113 (272)
T 4dyv_A          102 RVDVLFNNAGTG  113 (272)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            799999987653

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=86.17  E-value=2  Score=33.39  Aligned_cols=79  Identities=11%  Similarity=0.061  Sum_probs=48.0

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..+++||-.|++ |.++..    ++..|. +|++++.++...+.....+...+  ++.++.+|+.+.+-....      .
T Consensus        14 l~~k~vlITGas-ggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~   89 (278)
T 2bgk_A           14 LQDKVAIITGGA-GGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD--VISFVHCDVTKDEDVRNLVDTTIAK   89 (278)
T ss_dssp             TTTCEEEEESTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCC-CHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCC--ceEEEECCCCCHHHHHHHHHHHHHH
Confidence            367889988865 555444    444565 89999998876554443332211  688999999332211110      0


Q ss_pred             cCcccEEEEcCCC
Q psy17460        118 KQKVDTVIMNPPF  130 (216)
Q Consensus       118 ~~~~D~vi~npp~  130 (216)
                      -+.+|++|.|.-.
T Consensus        90 ~~~id~li~~Ag~  102 (278)
T 2bgk_A           90 HGKLDIMFGNVGV  102 (278)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            1368999988654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=86.16  E-value=1.9  Score=34.28  Aligned_cols=82  Identities=15%  Similarity=0.029  Sum_probs=49.9

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCCh--HHHHHHHHhhhHhCCCceEEEEeccccccccccc------
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDK--EILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~--~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------  116 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+.++.+.  ...+.....+...+. ++.++.+|+.+.+-....      
T Consensus        47 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGR-KAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTC-CEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHH
Confidence            367889999976554   2333555565 899988863  344444444444443 788999999332211110      


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+.+|++|.|.-..
T Consensus       125 ~~g~iD~lv~nAg~~  139 (294)
T 3r3s_A          125 ALGGLDILALVAGKQ  139 (294)
T ss_dssp             HHTCCCEEEECCCCC
T ss_pred             HcCCCCEEEECCCCc
Confidence            114789999887653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=85.88  E-value=1.5  Score=34.37  Aligned_cols=81  Identities=14%  Similarity=0.097  Sum_probs=48.4

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCC--CceEEEEeccccccccccc------
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEI--TNCDAILFEINEKSLDSSV------  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~------  116 (216)
                      .++++|-.|++.| ++..    +++.|. +|+.++.+++..+.+...+.....  .++.++.+|+.+.+-....      
T Consensus         5 ~~k~vlVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (278)
T 1spx_A            5 AEKVAIITGSSNG-IGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   82 (278)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence            5778888886644 4433    445565 899999998877665554421111  1688999999332211110      


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+.+|++|.|.-..
T Consensus        83 ~~g~id~lv~~Ag~~   97 (278)
T 1spx_A           83 KFGKLDILVNNAGAA   97 (278)
T ss_dssp             HHSCCCEEEECCC--
T ss_pred             HcCCCCEEEECCCCC
Confidence            013789999887543

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=85.83  E-value=3.2  Score=31.98  Aligned_cols=79  Identities=16%  Similarity=0.077  Sum_probs=48.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+   +. ++.++.+|+.+.+-....      .-
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---GD-AARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---GG-GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CC-ceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            367888888876543   2233455565 8999999987666544433   21 688899999332211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        78 g~iD~lv~nAg~~   90 (254)
T 1hdc_A           78 GSVDGLVNNAGIS   90 (254)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3789999987654

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=85.76  E-value=2  Score=32.85  Aligned_cols=79  Identities=10%  Similarity=0.093  Sum_probs=47.7

Q ss_pred             CCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhh-hHhCCCceEEEEeccccccccccc------cc
Q psy17460         50 GKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNK-NEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ++++|-.|++ |.++..    +++.|. +|+.++.+++..+.....+ ...+. ++.++.+|+.+.+-....      .-
T Consensus         2 ~k~vlItGas-ggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (250)
T 2cfc_A            2 SRVAIVTGAS-SGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYAD-KVLRVRADVADEGDVNAAIAATMEQF   78 (250)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGG-GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            4678877755 555544    444564 8999999987766554444 22221 688999999332211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        79 ~~id~li~~Ag~~   91 (250)
T 2cfc_A           79 GAIDVLVNNAGIT   91 (250)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3689999987543

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=85.63  E-value=2.2  Score=33.97  Aligned_cols=81  Identities=17%  Similarity=0.105  Sum_probs=54.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--c------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--S------V  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~------~  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...+..++.++.+|+  .+...  .      .
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv--~d~~~v~~~~~~~~~  115 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDV--SDPGSCADAARTVVD  115 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCT--TCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeC--CCHHHHHHHHHHHHH
Confidence            467888888876554   2334555666 8999999988777766666554423789999999  54321  0      0


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+.+|++|.|.-..
T Consensus       116 ~~g~iD~lvnnAg~~  130 (293)
T 3rih_A          116 AFGALDVVCANAGIF  130 (293)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HcCCCCEEEECCCCC
Confidence            114789999886554

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=85.55  E-value=2.1  Score=33.55  Aligned_cols=82  Identities=17%  Similarity=0.103  Sum_probs=50.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHH-------HHHHHHhhhHhCCCceEEEEeccccccccccc-
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEI-------LDIFIDNKNEFEITNCDAILFEINEKSLDSSV-  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~-------~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+.+.       ++.....+...+. ++.++.+|+.+.+-.... 
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~   81 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGG-QGLALKCDIREEDQVRAAV   81 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTS-EEEEEECCTTCHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHH
Confidence            368899999987664   2344556676 89999987642       3333333333343 789999999332211110 


Q ss_pred             -----ccCcccEEEEcCCCC
Q psy17460        117 -----FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 -----~~~~~D~vi~npp~~  131 (216)
                           .-+.+|++|.|.-..
T Consensus        82 ~~~~~~~g~iD~lvnnAG~~  101 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASAI  101 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHcCCCCEEEECCCcc
Confidence                 114789999987654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=85.54  E-value=4.6  Score=31.60  Aligned_cols=82  Identities=16%  Similarity=0.187  Sum_probs=54.3

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEeccccccccccc------
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSV------  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~------  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+++..+.+...+...+..  ++.++.+|+.+.+-....      
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            468889998876554   2334555665 8999999998887777766554432  688999999332211110      


Q ss_pred             ccCcccEEEEcCCC
Q psy17460        117 FKQKVDTVIMNPPF  130 (216)
Q Consensus       117 ~~~~~D~vi~npp~  130 (216)
                      .-+.+|++|.|.-.
T Consensus        88 ~~g~id~lv~nAg~  101 (281)
T 3svt_A           88 WHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence            11468999988764

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=85.47  E-value=2.3  Score=30.06  Aligned_cols=72  Identities=14%  Similarity=0.143  Sum_probs=41.9

Q ss_pred             CEEEEecCCCCHhHHHHh----HcCCCEEEEEeCC-hHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         51 KTVLDLGCGSGILTFGSI----LLGADFCFALECD-KEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~-~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ..|+=+|+  |.++..++    ..| ..|+.+|.+ ++..+........    .+.++.||..+.+......-+..|.|+
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~~~~----~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRLGD----NADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHCT----TCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCC-CCEEEEECCChHHHHHHHHhhcC----CCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            45777776  55554433    334 489999997 4544443332221    578999999333322221125789999


Q ss_pred             EcCC
Q psy17460        126 MNPP  129 (216)
Q Consensus       126 ~npp  129 (216)
                      +.-+
T Consensus        77 ~~~~   80 (153)
T 1id1_A           77 ALSD   80 (153)
T ss_dssp             ECSS
T ss_pred             EecC
Confidence            8654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=85.39  E-value=2.1  Score=33.23  Aligned_cols=78  Identities=12%  Similarity=0.106  Sum_probs=48.1

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++.| ++..    +++.|. +|+.++.+++..+.....+..    ++.++.+|+.+.+-....      .
T Consensus        10 l~~k~vlVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~D~~d~~~v~~~~~~~~~~   83 (263)
T 3ak4_A           10 LSGRKAIVTGGSKG-IGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLEN----GGFAVEVDVTKRASVDAAMQKAIDA   83 (263)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTT----CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc----CCeEEEEeCCCHHHHHHHHHHHHHH
Confidence            36788988886544 4433    445565 899999998766554433321    577889998332211110      0


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|++|.|.-..
T Consensus        84 ~g~iD~lv~~Ag~~   97 (263)
T 3ak4_A           84 LGGFDLLCANAGVS   97 (263)
T ss_dssp             HTCCCEEEECCCCC
T ss_pred             cCCCCEEEECCCcC
Confidence            13789999887543

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=85.29  E-value=6.7  Score=30.38  Aligned_cols=81  Identities=12%  Similarity=0.053  Sum_probs=47.9

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEe-CChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALE-CDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD-~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      .++++|-.|++.| ++..    +++.|. +|+.++ .+.+..+.........+. ++.++.+|+.+.+-....      .
T Consensus        24 ~~k~vlITGas~g-IG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~  100 (269)
T 3gk3_A           24 AKRVAFVTGGMGG-LGAAISRRLHDAGM-AVAVSHSERNDHVSTWLMHERDAGR-DFKAYAVDVADFESCERCAEKVLAD  100 (269)
T ss_dssp             CCCEEEETTTTSH-HHHHHHHHHHTTTC-EEEEEECSCHHHHHHHHHHHHTTTC-CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHH
Confidence            5677887776544 4433    444555 888888 555555554444433333 789999999332211110      1


Q ss_pred             cCcccEEEEcCCCCC
Q psy17460        118 KQKVDTVIMNPPFGT  132 (216)
Q Consensus       118 ~~~~D~vi~npp~~~  132 (216)
                      -+.+|++|.|.-...
T Consensus       101 ~g~id~li~nAg~~~  115 (269)
T 3gk3_A          101 FGKVDVLINNAGITR  115 (269)
T ss_dssp             HSCCSEEEECCCCCC
T ss_pred             cCCCCEEEECCCcCC
Confidence            137899999876543

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=85.18  E-value=1.3  Score=34.27  Aligned_cols=79  Identities=10%  Similarity=0.027  Sum_probs=44.6

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+   +. ++.++.+|+.+.+-....      .-
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAEL---GA-AVRFRNADVTNEADATAALAFAKQEF   79 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC----------------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---CC-ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            368889999987654   2344555665 8999999887665544433   21 688999999332211110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +..|++|.|.-..
T Consensus        80 g~id~lv~nAg~~   92 (257)
T 3tpc_A           80 GHVHGLVNCAGTA   92 (257)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3789999886554

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=85.16  E-value=3.7  Score=31.64  Aligned_cols=82  Identities=18%  Similarity=0.205  Sum_probs=52.7

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc--cccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEI--NEKSLDSS------V  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~--~~~~~~~~------~  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+...+-.++.++.+|+  .+.+-...      .
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence            468889998876554   2334555666 8999999998887766665544322578888888  22211100      0


Q ss_pred             ccCcccEEEEcCCC
Q psy17460        117 FKQKVDTVIMNPPF  130 (216)
Q Consensus       117 ~~~~~D~vi~npp~  130 (216)
                      .-+.+|++|.|.-.
T Consensus        89 ~~g~id~lv~nAg~  102 (252)
T 3f1l_A           89 NYPRLDGVLHNAGL  102 (252)
T ss_dssp             HCSCCSEEEECCCC
T ss_pred             hCCCCCEEEECCcc
Confidence            11478999988754

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=85.14  E-value=4.2  Score=30.93  Aligned_cols=83  Identities=16%  Similarity=0.141  Sum_probs=53.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc--cc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD--SS------V  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~------~  116 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...+..++.++..|+...+..  ..      .
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            467888888876543   2233455565 8999999998888877777665544677787777212110  00      0


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+.+|++|.|.-..
T Consensus        91 ~~g~id~lv~nAg~~  105 (247)
T 3i1j_A           91 EFGRLDGLLHNASII  105 (247)
T ss_dssp             HHSCCSEEEECCCCC
T ss_pred             hCCCCCEEEECCccC
Confidence            114789999987653

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=85.02  E-value=3.7  Score=32.28  Aligned_cols=79  Identities=11%  Similarity=0.036  Sum_probs=49.5

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCCh-HHHHHHHHhhh-HhCCCceEEEEecccccc----cc--ccc-
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDK-EILDIFIDNKN-EFEITNCDAILFEINEKS----LD--SSV-  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~-~~~~~~~~~~~-~~~~~~v~~~~~d~~~~~----~~--~~~-  116 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.++ +..+.+...+. ..+. ++.++.+|+  .+    ..  ... 
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~-~~~~~~~Dv--~~~~~~~~~v~~~~   97 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSN-TAVVCQADL--TNSNVLPASCEEII   97 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTT-CEEEEECCC--SCSTTHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCC-ceEEEEeec--CCccCCHHHHHHHH
Confidence            67888888876554   2233555565 899999987 66655544443 2232 688999999  44    11  000 


Q ss_pred             -----ccCcccEEEEcCCCC
Q psy17460        117 -----FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 -----~~~~~D~vi~npp~~  131 (216)
                           .-+.+|++|.|.-..
T Consensus        98 ~~~~~~~g~iD~lvnnAG~~  117 (288)
T 2x9g_A           98 NSCFRAFGRCDVLVNNASAF  117 (288)
T ss_dssp             HHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHhcCCCCEEEECCCCC
Confidence                 114789999987543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=85.02  E-value=4.7  Score=31.14  Aligned_cols=81  Identities=17%  Similarity=0.205  Sum_probs=51.6

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-...      ..-
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            367889988876554   2233455565 899999998877766555544343 68899999933221100      011


Q ss_pred             CcccEEEEcCCC
Q psy17460        119 QKVDTVIMNPPF  130 (216)
Q Consensus       119 ~~~D~vi~npp~  130 (216)
                      +.+|++|.|.-.
T Consensus        83 g~id~lv~nAg~   94 (262)
T 1zem_A           83 GKIDFLFNNAGY   94 (262)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            378999998754

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=84.87  E-value=4.4  Score=31.28  Aligned_cols=77  Identities=16%  Similarity=0.264  Sum_probs=50.0

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc---c---c-
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS---V---F-  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~---~-  117 (216)
                      .++++|-.|++.| ++..    +++.|. +|+.++.+++..+.+...+...+. ++.++.+|+.+.+-...   .   . 
T Consensus         4 ~~k~vlVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            4 NGQVCVVTGASRG-IGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGG-QCVPVVCDSSQESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSS-EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC-ceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            5778888886554 4433    445565 899999998877766655544443 68899999933221100   0   0 


Q ss_pred             cCcccEEEEcC
Q psy17460        118 KQKVDTVIMNP  128 (216)
Q Consensus       118 ~~~~D~vi~np  128 (216)
                      -+.+|++|.|.
T Consensus        81 ~g~id~lvnnA   91 (260)
T 2qq5_A           81 QGRLDVLVNNA   91 (260)
T ss_dssp             TTCCCEEEECC
T ss_pred             CCCceEEEECC
Confidence            25789999987

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=84.86  E-value=5  Score=32.76  Aligned_cols=98  Identities=13%  Similarity=0.125  Sum_probs=61.8

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhC---------------------CCceEEEEec
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFE---------------------ITNCDAILFE  106 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~---------------------~~~v~~~~~d  106 (216)
                      +...|+.+|||..+...-+...+ ...++-+|. |+.++.-++.+...+                     ..+..++.+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            45689999999999998877653 356667777 888887777765541                     1368899999


Q ss_pred             cccccccc---cc--ccCcccEEEEcCCCCCCCCCCCHHHHHHHhh
Q psy17460        107 INEKSLDS---SV--FKQKVDTVIMNPPFGTRNCGIDLAFVQYAAD  147 (216)
Q Consensus       107 ~~~~~~~~---~~--~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~  147 (216)
                      +.+.++..   ..  ..+...++++---+.++.+......+..+..
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~  221 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMS  221 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHh
Confidence            94433321   10  1145677776555555544444445554433

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=84.78  E-value=5.5  Score=32.54  Aligned_cols=83  Identities=13%  Similarity=0.106  Sum_probs=51.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHH-------HHHHHHhhhHhCCCceEEEEeccccccccccc-
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEI-------LDIFIDNKNEFEITNCDAILFEINEKSLDSSV-  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~-------~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++.       ++.+...+...+. ++.++.+|+.+.+-.... 
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~  120 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGG-KALPCIVDVRDEQQISAAV  120 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHH
Confidence            468899988887654   2334555565 89999988653       3334444444443 788999999332211110 


Q ss_pred             -----ccCcccEEEEcCCCCC
Q psy17460        117 -----FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       117 -----~~~~~D~vi~npp~~~  132 (216)
                           .-+.+|++|.|.-...
T Consensus       121 ~~~~~~~g~iDilVnnAG~~~  141 (346)
T 3kvo_A          121 EKAIKKFGGIDILVNNASAIS  141 (346)
T ss_dssp             HHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCCC
Confidence                 1147999999876543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=84.60  E-value=7.3  Score=29.31  Aligned_cols=73  Identities=18%  Similarity=0.164  Sum_probs=46.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCce-EEEEecccccccccccccCccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNC-DAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      ..+++||-.|+ +|.++..++    +.|. +|++++.+++..+.....       ++ +++.+|+  .+.... .-..+|
T Consensus        19 l~~~~ilVtGa-tG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~-------~~~~~~~~Dl--~~~~~~-~~~~~D   86 (236)
T 3e8x_A           19 FQGMRVLVVGA-NGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRER-------GASDIVVANL--EEDFSH-AFASID   86 (236)
T ss_dssp             --CCEEEEETT-TSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHT-------TCSEEEECCT--TSCCGG-GGTTCS
T ss_pred             cCCCeEEEECC-CChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhC-------CCceEEEccc--HHHHHH-HHcCCC
Confidence            36788998874 555554443    4454 899999998765443221       57 8999999  422111 115799


Q ss_pred             EEEEcCCCCC
Q psy17460        123 TVIMNPPFGT  132 (216)
Q Consensus       123 ~vi~npp~~~  132 (216)
                      +||.+.....
T Consensus        87 ~vi~~ag~~~   96 (236)
T 3e8x_A           87 AVVFAAGSGP   96 (236)
T ss_dssp             EEEECCCCCT
T ss_pred             EEEECCCCCC
Confidence            9999877543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=84.57  E-value=2.9  Score=32.98  Aligned_cols=83  Identities=13%  Similarity=0.143  Sum_probs=50.9

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+...+-..+.++.+|+.+.+-....      .-
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  109 (281)
T 4dry_A           31 GEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF  109 (281)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            367888888876554   2233455565 8999999998877766665443322468999999332211110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus       110 g~iD~lvnnAG~~  122 (281)
T 4dry_A          110 ARLDLLVNNAGSN  122 (281)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4689999987543

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=84.48  E-value=2.5  Score=32.93  Aligned_cols=83  Identities=10%  Similarity=-0.037  Sum_probs=49.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCC---hHHHHHHHHhhhHhCCCceEEEEeccccccccccc-----
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECD---KEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV-----  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~---~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-----  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+   .+..+.....+...+. ++.++.+|+.+.+-....     
T Consensus         9 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A            9 LKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGA-KVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTC-EEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHH
Confidence            468899988877654   2233444555 88888754   3344444444444343 789999999332211110     


Q ss_pred             -ccCcccEEEEcCCCCC
Q psy17460        117 -FKQKVDTVIMNPPFGT  132 (216)
Q Consensus       117 -~~~~~D~vi~npp~~~  132 (216)
                       .-+..|++|.|.-...
T Consensus        87 ~~~g~iD~lvnnAg~~~  103 (262)
T 3ksu_A           87 KEFGKVDIAINTVGKVL  103 (262)
T ss_dssp             HHHCSEEEEEECCCCCC
T ss_pred             HHcCCCCEEEECCCCCC
Confidence             1147899999876543

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=84.45  E-value=1.4  Score=34.50  Aligned_cols=79  Identities=13%  Similarity=0.042  Sum_probs=51.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.+|.+++..+.....+   +. ++.++.+|+.+.+-....      .-
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (271)
T 3tzq_B            9 LENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASV---GR-GAVHHVVDLTNEVSVRALIDFTIDTF   83 (271)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHH---CT-TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CC-CeEEEECCCCCHHHHHHHHHHHHHHc
Confidence            468899988877654   2344556665 8999999987666555444   22 678899999332211110      11


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        84 g~id~lv~nAg~~   96 (271)
T 3tzq_B           84 GRLDIVDNNAAHS   96 (271)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3789999987654

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=84.16  E-value=2.1  Score=32.61  Aligned_cols=80  Identities=16%  Similarity=0.057  Sum_probs=46.2

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEE-eCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFAL-ECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~i-D~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ++++||-.|++ |.++..    +++.|. +|+.+ +.++...+.....+...+. ++.++.+|+.+.+-....      .
T Consensus         4 ~~~~vlItGas-ggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            4 KGKTAIVTGSS-RGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGI-NVVVAKGDVKNPEDVENMVKTAMDA   80 (247)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTC-CEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHh
Confidence            56788877765 554444    444565 88888 5666555555444444343 688999999332211110      0


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|++|.|....
T Consensus        81 ~~~~d~vi~~Ag~~   94 (247)
T 2hq1_A           81 FGRIDILVNNAGIT   94 (247)
T ss_dssp             HSCCCEEEECC---
T ss_pred             cCCCCEEEECCCCC
Confidence            13789999887543

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=84.16  E-value=3  Score=32.57  Aligned_cols=78  Identities=19%  Similarity=0.173  Sum_probs=48.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+.     ++.++.+|+.+.+-....      .-
T Consensus         7 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (270)
T 1yde_A            7 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELP-----GAVFILCDVTQEDDVKTLVSETIRRF   80 (270)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT-----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc-----CCeEEEcCCCCHHHHHHHHHHHHHHc
Confidence            367889988866543   2233455565 89999999876655443321     478899999332211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        81 g~iD~lv~nAg~~   93 (270)
T 1yde_A           81 GRLDCVVNNAGHH   93 (270)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3689999887543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=84.06  E-value=2  Score=34.97  Aligned_cols=46  Identities=30%  Similarity=0.382  Sum_probs=33.7

Q ss_pred             cCCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         45 YNDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        45 ~~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ....+|++||-.|+|. |.+++.+++. |+.+|+++|.+++.++.++.
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  209 (352)
T 3fpc_A          162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE  209 (352)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            3456789999998763 5555556654 54589999999988877765

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=83.92  E-value=2.4  Score=33.05  Aligned_cols=78  Identities=19%  Similarity=0.176  Sum_probs=48.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+.    .++.++.+|+.+.+-....      .-
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE----AEAIAVVADVSDPKAVEAVFAEALEEF   78 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc----CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            367888888876553   2233445565 89999999877665544432    2688999999332211110      11


Q ss_pred             CcccEEEEcCCC
Q psy17460        119 QKVDTVIMNPPF  130 (216)
Q Consensus       119 ~~~D~vi~npp~  130 (216)
                      +.+|++|.|.-.
T Consensus        79 g~iD~lvnnAg~   90 (263)
T 2a4k_A           79 GRLHGVAHFAGV   90 (263)
T ss_dssp             SCCCEEEEGGGG
T ss_pred             CCCcEEEECCCC
Confidence            368999988644

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=83.89  E-value=2.6  Score=32.05  Aligned_cols=79  Identities=9%  Similarity=0.011  Sum_probs=46.9

Q ss_pred             CCEEEEecCCCCHhHHHHh----HcCCCEEEE-EeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         50 GKTVLDLGCGSGILTFGSI----LLGADFCFA-LECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~----~~~~~~v~~-iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      +++||-.|+ +|.++..++    +.|. +|+. .+.+++..+.....+...+. ++.++.+|+.+.+-....      .-
T Consensus         1 ~k~vlVTGa-sggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            1 SPVVVVTGA-SRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CCEEEETTC-SSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            356666664 555555444    4455 7887 47887776665555544443 688999999332211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        78 g~id~li~~Ag~~   90 (244)
T 1edo_A           78 GTIDVVVNNAGIT   90 (244)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3689999887554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=83.88  E-value=0.88  Score=32.46  Aligned_cols=75  Identities=17%  Similarity=0.148  Sum_probs=41.8

Q ss_pred             CCCCEEEEecCCC-CHhH-HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGS-GILT-FGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~Gt-G~~~-~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ..+.+|+-+|+|. |... ..+...|. .|+++|.+++.++.++.   ..   .+.++.+|..+.+.........+|+|+
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~~---g~~~~~~d~~~~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---EF---SGFTVVGDAAEFETLKECGMEKADMVF   89 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---TC---CSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---cC---CCcEEEecCCCHHHHHHcCcccCCEEE
Confidence            3677899998753 3222 22333454 89999999865443221   11   355777887222111111114689999


Q ss_pred             EcCC
Q psy17460        126 MNPP  129 (216)
Q Consensus       126 ~npp  129 (216)
                      ..-|
T Consensus        90 ~~~~   93 (155)
T 2g1u_A           90 AFTN   93 (155)
T ss_dssp             ECSS
T ss_pred             EEeC
Confidence            8655

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=83.66  E-value=2.7  Score=32.77  Aligned_cols=80  Identities=16%  Similarity=0.079  Sum_probs=49.7

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEE-eCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFAL-ECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~i-D~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ++++||-.|++.| ++..    +++.|. +|+.+ ..+++..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus        25 ~~k~vlITGas~g-IG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (272)
T 4e3z_A           25 DTPVVLVTGGSRG-IGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGG-EAVAIPGDVGNAADIAAMFSAVDRQ  101 (272)
T ss_dssp             CSCEEEETTTTSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            5677888776554 4433    445565 67655 7787777776666655443 789999999332211110      1


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|++|.|.-..
T Consensus       102 ~g~id~li~nAg~~  115 (272)
T 4e3z_A          102 FGRLDGLVNNAGIV  115 (272)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             CCCCCEEEECCCCC
Confidence            13689999987654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=83.63  E-value=3.5  Score=31.93  Aligned_cols=82  Identities=17%  Similarity=0.131  Sum_probs=49.0

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC-CCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFE-ITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+.... -.++.++.+|+.+.+-....      .-
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            57788888865443   2233445565 89999999877665444443211 11688999999332211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        85 g~id~lv~~Ag~~   97 (267)
T 2gdz_A           85 GRLDILVNNAGVN   97 (267)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3689999987643

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=83.33  E-value=3  Score=34.06  Aligned_cols=45  Identities=22%  Similarity=0.207  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++||-.|+|. |.+++.+++. |+.+|+++|.+++..+.++.
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            456789999999863 5555666654 55589999999988887754

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=83.27  E-value=13  Score=28.16  Aligned_cols=78  Identities=13%  Similarity=0.159  Sum_probs=48.3

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCce-EEEEecccccccccccc-----
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNC-DAILFEINEKSLDSSVF-----  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~-----  117 (216)
                      ..++++|-.|++ |.++..    +++.|. +|++++.+++..+.....+.   . ++ .++.+|+.+.+-.....     
T Consensus         9 ~~~k~vlITGas-ggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~   82 (254)
T 2wsb_A            9 LDGACAAVTGAG-SGIGLEICRAFAASGA-RLILIDREAAALDRAAQELG---A-AVAARIVADVTDAEAMTAAAAEAEA   82 (254)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---G-GEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---c-cceeEEEEecCCHHHHHHHHHHHHh
Confidence            367788888865 455444    444564 89999999876665544432   1 56 88999993322111100     


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|++|.|....
T Consensus        83 ~~~id~li~~Ag~~   96 (254)
T 2wsb_A           83 VAPVSILVNSAGIA   96 (254)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             hCCCcEEEECCccC
Confidence            14689999987554

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=83.00  E-value=2.5  Score=34.70  Aligned_cols=45  Identities=20%  Similarity=0.228  Sum_probs=32.9

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++||-.|+|. |.+++.+++. |+.+|+++|.+++..+.++.
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            456789999999753 4455555553 55589999999988887764

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=82.93  E-value=3.3  Score=32.51  Aligned_cols=80  Identities=13%  Similarity=0.085  Sum_probs=51.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   .+..+++.|+ +|+.++.+.+..+.+.... ..+- ++.++.+|+.+.+-...      ..-
T Consensus         5 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~-~~~~-~~~~~~~Dv~~~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            5 LQDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALA-QRQP-RATYLPVELQDDAQCRDAVAQTIATF   81 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHH-HHCT-TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHH-hcCC-CEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            479999999998887   3455667776 8899998776554443332 2332 68899999933221111      011


Q ss_pred             CcccEEEEcCCC
Q psy17460        119 QKVDTVIMNPPF  130 (216)
Q Consensus       119 ~~~D~vi~npp~  130 (216)
                      +..|+++.|.-.
T Consensus        82 G~iDiLVNnAGi   93 (258)
T 4gkb_A           82 GRLDGLVNNAGV   93 (258)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            578999988643

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=82.79  E-value=2.7  Score=32.34  Aligned_cols=78  Identities=13%  Similarity=0.056  Sum_probs=47.9

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..+++||-.|++ |.++..    +++.|. +|++++.++...+.....+   +. ++.++.+|+.+.+-....      .
T Consensus        10 ~~~k~vlVTGas-ggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~v~~~~~~~~~~   83 (265)
T 2o23_A           10 VKGLVAVITGGA-SGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKL---GN-NCVFAPADVTSEKDVQTALALAKGK   83 (265)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHH---CT-TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHh---CC-ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            367888888875 444444    444555 8999999876555443333   22 688999999332211110      0


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|++|.|.-..
T Consensus        84 ~g~id~li~~Ag~~   97 (265)
T 2o23_A           84 FGRVDVAVNCAGIA   97 (265)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             CCCCCEEEECCccC
Confidence            13789999887544

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=82.77  E-value=3.9  Score=31.94  Aligned_cols=74  Identities=8%  Similarity=0.021  Sum_probs=48.6

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-----cccCc
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-----VFKQK  120 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~~~  120 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+   +. ++.++.+|+.+.+-...     ..-+.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~---~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~~  103 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADEL---GN-RAEFVSTNVTSEDSVLAAIEAANQLGR  103 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CT-TEEEEECCTTCHHHHHHHHHHHTTSSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---CC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            68889988876654   2334555665 8999999988776655554   22 78999999933221111     01146


Q ss_pred             ccEEEEc
Q psy17460        121 VDTVIMN  127 (216)
Q Consensus       121 ~D~vi~n  127 (216)
                      .|+++.|
T Consensus       104 id~lv~~  110 (281)
T 3ppi_A          104 LRYAVVA  110 (281)
T ss_dssp             EEEEEEC
T ss_pred             CCeEEEc
Confidence            8999988

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=82.71  E-value=1.5  Score=34.23  Aligned_cols=76  Identities=21%  Similarity=0.201  Sum_probs=50.1

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D  122 (216)
                      +.|+++|-.|++.|.   .+..+++.|+ +|+..|.+++.++.       ..-.++..+.+|+.+.+-...  ..-+..|
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~-------~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iD   80 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHA-------PRHPRIRREELDITDSQRLQRLFEALPRLD   80 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTS-------CCCTTEEEEECCTTCHHHHHHHHHHCSCCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhh-------hhcCCeEEEEecCCCHHHHHHHHHhcCCCC
Confidence            589999999998887   3455667776 89999998754331       111268889999933221111  1115789


Q ss_pred             EEEEcCCCC
Q psy17460        123 TVIMNPPFG  131 (216)
Q Consensus       123 ~vi~npp~~  131 (216)
                      +++.|.-..
T Consensus        81 iLVNNAGi~   89 (242)
T 4b79_A           81 VLVNNAGIS   89 (242)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999886543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=82.50  E-value=1.9  Score=32.47  Aligned_cols=69  Identities=16%  Similarity=0.118  Sum_probs=42.4

Q ss_pred             EEEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         52 TVLDLGCGSGILTFGSIL----LGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      +|+=+|+  |.++..+++    .| ..|+.+|.+++.++......      ++.++.+|+.+.+......-...|+|++.
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g-~~v~vid~~~~~~~~l~~~~------~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRK-YGVVIINKDRELCEEFAKKL------KATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHHS------SSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHc------CCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            3566665  555544443    34 48999999998876644321      46789999933222222122578999985


Q ss_pred             CC
Q psy17460        128 PP  129 (216)
Q Consensus       128 pp  129 (216)
                      .|
T Consensus        73 ~~   74 (218)
T 3l4b_C           73 TP   74 (218)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=82.46  E-value=5  Score=32.53  Aligned_cols=41  Identities=20%  Similarity=0.257  Sum_probs=29.6

Q ss_pred             CCCEEEEec-CC-CCHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         49 DGKTVLDLG-CG-SGILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        49 ~~~~vlD~g-~G-tG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      +|++||-.| +| .|..+..+++. |+ +|++++.+++.++.++.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  193 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK  193 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            688999884 33 34455555554 55 99999999988887765

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=82.38  E-value=3.2  Score=32.06  Aligned_cols=77  Identities=18%  Similarity=0.218  Sum_probs=48.6

Q ss_pred             CCEEEEecCCCCH---hHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460         50 GKTVLDLGCGSGI---LTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ  119 (216)
Q Consensus        50 ~~~vlD~g~GtG~---~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~  119 (216)
                      ++++|-.|++.|.   ++..+++.|. ..|+.++.+++.++.....+.   . ++.++.+|+.+.+-....      .-+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~---~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG---D-RFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG---G-GEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC---C-ceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4678888866554   2233455554 589999999887766555442   1 789999999332211110      114


Q ss_pred             cccEEEEcCCC
Q psy17460        120 KVDTVIMNPPF  130 (216)
Q Consensus       120 ~~D~vi~npp~  130 (216)
                      .+|++|.|.-.
T Consensus        78 ~id~lvnnAg~   88 (254)
T 3kzv_A           78 KIDSLVANAGV   88 (254)
T ss_dssp             CCCEEEEECCC
T ss_pred             CccEEEECCcc
Confidence            78999988765

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=81.96  E-value=9.5  Score=29.76  Aligned_cols=78  Identities=14%  Similarity=0.069  Sum_probs=49.2

Q ss_pred             CEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccCcc
Q psy17460         51 KTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQKV  121 (216)
Q Consensus        51 ~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~~  121 (216)
                      +++|-.|++.|.   ++..+++.|. +|+.++.+++.++.....+...  .++.++.+|+.+.+-...      ..-+.+
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   98 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAK--TRVLPLTLDVRDRAAMSAAVDNLPEEFATL   98 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHTCCGGGSSC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            678888876554   2344555665 8999999988776655544332  268899999933221100      011467


Q ss_pred             cEEEEcCCCC
Q psy17460        122 DTVIMNPPFG  131 (216)
Q Consensus       122 D~vi~npp~~  131 (216)
                      |++|.|.-..
T Consensus        99 D~lvnnAG~~  108 (272)
T 2nwq_A           99 RGLINNAGLA  108 (272)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999987543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=81.79  E-value=2.6  Score=34.42  Aligned_cols=46  Identities=24%  Similarity=0.192  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHHh
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ...+|++||-.|+|. |.+++.+++. |+..|+++|.+++..+.++..
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            556789999999853 4555556654 555599999999999988865

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=81.76  E-value=2.1  Score=35.35  Aligned_cols=45  Identities=18%  Similarity=0.204  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEecCC-CCHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCG-SGILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~G-tG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++||-.|+| .|.+++.+++. |+.+|+++|.+++.++.++.
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            45678899999986 35555555554 66689999999988887654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=81.75  E-value=6.9  Score=29.75  Aligned_cols=78  Identities=15%  Similarity=0.089  Sum_probs=50.1

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccC
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQ  119 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~  119 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+++.++.....+..    ++.++.+|+.+.+-...      ..-+
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~D~~~~~~v~~~~~~~~~~~g   76 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGN----AVIGIVADLAHHEDVDVAFAAAVEWGG   76 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG----GEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC----CceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            35688888876554   2334555665 899999999877766655532    58899999933221110      0114


Q ss_pred             cccEEEEcCCCC
Q psy17460        120 KVDTVIMNPPFG  131 (216)
Q Consensus       120 ~~D~vi~npp~~  131 (216)
                      .+|++|.|.-..
T Consensus        77 ~id~lvnnAg~~   88 (235)
T 3l6e_A           77 LPELVLHCAGTG   88 (235)
T ss_dssp             SCSEEEEECCCC
T ss_pred             CCcEEEECCCCC
Confidence            789999887654

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=81.65  E-value=2.8  Score=32.32  Aligned_cols=78  Identities=14%  Similarity=0.072  Sum_probs=45.2

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      .++++|-.|++ |.++..    +++.|. +|+.++.+++  +.....+...+. ++.++.+|+.+.+-....      .-
T Consensus         3 ~~k~vlVTGas-~giG~~ia~~l~~~G~-~V~~~~r~~~--~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~   77 (255)
T 2q2v_A            3 KGKTALVTGST-SGIGLGIAQVLARAGA-NIVLNGFGDP--APALAEIARHGV-KAVHHPADLSDVAQIEALFALAEREF   77 (255)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTC-EEEEECSSCC--HHHHHHHHTTSC-CEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCch--HHHHHHHHhcCC-ceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            56788887765 444433    444565 8999998775  222223332232 688889998332211110      01


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +.+|++|.|.-..
T Consensus        78 g~id~lv~~Ag~~   90 (255)
T 2q2v_A           78 GGVDILVNNAGIQ   90 (255)
T ss_dssp             SSCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3789999987544

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=81.57  E-value=6.5  Score=30.08  Aligned_cols=79  Identities=10%  Similarity=0.031  Sum_probs=47.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCCh-HHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDK-EILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~-~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.++ +..+.   .+...+. ++.++.+|+.+.+-....      .
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~---~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (249)
T 2ew8_A            5 LKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEA---AIRNLGR-RVLTVKCDVSQPGDVEAFGKQVIST   79 (249)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHH---HHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHH---HHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHH
Confidence            367889988866553   2233445565 899999987 55443   2222232 688899999332211110      0


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|++|.|.-..
T Consensus        80 ~g~id~lv~nAg~~   93 (249)
T 2ew8_A           80 FGRCDILVNNAGIY   93 (249)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             cCCCCEEEECCCCC
Confidence            14789999987554

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=81.53  E-value=3.1  Score=34.13  Aligned_cols=45  Identities=16%  Similarity=0.213  Sum_probs=32.7

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++||-.|+|. |.+++.+++. |+.+|+++|.+++..+.++.
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~  233 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE  233 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            456789999999753 4445555553 55589999999988887764

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=81.46  E-value=6.4  Score=29.78  Aligned_cols=77  Identities=18%  Similarity=0.234  Sum_probs=46.2

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc--ccCcc
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV--FKQKV  121 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~~  121 (216)
                      .++++||-.|++. .++..    +++.|. +|+.++.+++..+.......     +++++.+|+.+.+-....  .-+.+
T Consensus         5 l~~k~vlITGasg-giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~i   77 (244)
T 3d3w_A            5 LAGRRVLVTGAGK-GIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP-----GIEPVCVDLGDWEATERALGSVGPV   77 (244)
T ss_dssp             CTTCEEEEESTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST-----TCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             cCCcEEEEECCCc-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC-----CCCEEEEeCCCHHHHHHHHHHcCCC
Confidence            3678888888654 44433    444565 89999999876654433221     456778998332211110  11468


Q ss_pred             cEEEEcCCCC
Q psy17460        122 DTVIMNPPFG  131 (216)
Q Consensus       122 D~vi~npp~~  131 (216)
                      |++|.|.-..
T Consensus        78 d~vi~~Ag~~   87 (244)
T 3d3w_A           78 DLLVNNAAVA   87 (244)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCccC
Confidence            9999887554

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=81.42  E-value=6.5  Score=29.71  Aligned_cols=77  Identities=14%  Similarity=0.095  Sum_probs=46.4

Q ss_pred             CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc--ccCcc
Q psy17460         48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV--FKQKV  121 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~~  121 (216)
                      .++++||-.|++ |.++..    +++.|. +|++++.+++..+......     .+++++.+|+.+.+-....  .-+.+
T Consensus         5 ~~~~~vlVTGas-ggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~i   77 (244)
T 1cyd_A            5 FSGLRALVTGAG-KGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC-----PGIEPVCVDLGDWDATEKALGGIGPV   77 (244)
T ss_dssp             CTTCEEEEESTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc-----cCCCcEEecCCCHHHHHHHHHHcCCC
Confidence            367788888764 555444    444555 8999999987655433321     1467778998332211110  11368


Q ss_pred             cEEEEcCCCC
Q psy17460        122 DTVIMNPPFG  131 (216)
Q Consensus       122 D~vi~npp~~  131 (216)
                      |+||.|....
T Consensus        78 d~vi~~Ag~~   87 (244)
T 1cyd_A           78 DLLVNNAALV   87 (244)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCccc
Confidence            9999987654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=81.31  E-value=3.2  Score=34.12  Aligned_cols=45  Identities=20%  Similarity=0.224  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++||-.|+|. |.+++.+++. |+.+|+++|.+++..+.++.
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            456789999999752 4455555554 55589999999988887754

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=81.20  E-value=6.7  Score=30.09  Aligned_cols=80  Identities=23%  Similarity=0.210  Sum_probs=52.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~  118 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.....+   +. ++.++.+|+.+.+-....      .-
T Consensus         7 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (261)
T 3n74_A            7 LEGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEI---GD-AALAVAADISKEADVDAAVEAALSKF   81 (261)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CT-TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CC-ceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            367889999987654   3344556665 8999999988776655543   22 688999999332211110      11


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +.+|++|.|.-...
T Consensus        82 g~id~li~~Ag~~~   95 (261)
T 3n74_A           82 GKVDILVNNAGIGH   95 (261)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCccCC
Confidence            36899999876543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=81.20  E-value=6.9  Score=30.87  Aligned_cols=82  Identities=17%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChH-HHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKE-ILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~-~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+.++.++. ..+.....+...+. ++.++.+|+.+.+-....      .
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGV-KCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTC-CEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999976654   2334555665 8999998865 34444444444443 789999999332211110      1


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|++|.|.-..
T Consensus       123 ~g~iD~lvnnAg~~  136 (291)
T 3ijr_A          123 LGSLNILVNNVAQQ  136 (291)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             cCCCCEEEECCCCc
Confidence            14789999886543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=81.04  E-value=4.3  Score=31.82  Aligned_cols=80  Identities=14%  Similarity=0.066  Sum_probs=47.6

Q ss_pred             CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHH-HHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460         49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEI-LDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F  117 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~-~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~  117 (216)
                      .++++|-.|++.| ++..    +++.|. +|+.++.++.. .+.+...+...+. ++.++.+|+.+.+-....      .
T Consensus        28 ~~k~vlVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGAGRG-IGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCC-CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            6788888887654 4433    444565 89999987643 3443344444343 688899998332211110      0


Q ss_pred             cCcccEEEEcCCCC
Q psy17460        118 KQKVDTVIMNPPFG  131 (216)
Q Consensus       118 ~~~~D~vi~npp~~  131 (216)
                      -+.+|++|.|.-..
T Consensus       105 ~g~iD~lv~~Ag~~  118 (283)
T 1g0o_A          105 FGKLDIVCSNSGVV  118 (283)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             cCCCCEEEECCCcC
Confidence            14689999987554

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=80.89  E-value=13  Score=30.11  Aligned_cols=120  Identities=17%  Similarity=0.198  Sum_probs=59.7

Q ss_pred             CCCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCC---hHHHHHHHHhhhHhCCCceEEEEecccccc-cccccccC
Q psy17460         47 DIDGKTVLDLGCGSGI---LTFGSILLGADFCFALECD---KEILDIFIDNKNEFEITNCDAILFEINEKS-LDSSVFKQ  119 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~---~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~  119 (216)
                      ...++++|-+|+| |.   .+..++..|+.+|+.++.+   .+..+.....+....  .+.+...++++.+ +....  .
T Consensus       151 ~l~gk~~lVlGaG-G~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~--~~~~~~~~~~~~~~l~~~l--~  225 (315)
T 3tnl_A          151 DIIGKKMTICGAG-GAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKT--DCKAQLFDIEDHEQLRKEI--A  225 (315)
T ss_dssp             CCTTSEEEEECCS-HHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS--SCEEEEEETTCHHHHHHHH--H
T ss_pred             CccCCEEEEECCC-hHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhc--CCceEEeccchHHHHHhhh--c
Confidence            4578999999987 43   2233555677789999998   554444333333221  1223333331111 11111  4


Q ss_pred             cccEEEEcCCCCCCCCCCCHHH-HHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460        120 KVDTVIMNPPFGTRNCGIDLAF-VQYAADISKVVYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus       120 ~~D~vi~npp~~~~~~~~~~~~-~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~  171 (216)
                      .+|+||..=|-+.......... ....+.....+|.+.+....-.+++.+++.
T Consensus       226 ~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~~T~ll~~A~~~  278 (315)
T 3tnl_A          226 ESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQ  278 (315)
T ss_dssp             TCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCSSSSCHHHHHHHHT
T ss_pred             CCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCCCCHHHHHHHHC
Confidence            6899997766553311000000 001122222266666665556666666654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=80.58  E-value=3.8  Score=33.72  Aligned_cols=44  Identities=20%  Similarity=0.175  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++||-.|+|. |.+++.+++. |+ +|+++|.+++..+.++.
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            456789999999863 5555566654 55 79999999988887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	1e-44
d1wy7a1	201	c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A	1e-40
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	1e-07
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	3e-07
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	8e-07
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	6e-06
d2f8la1	328	c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {	3e-04
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	0.001
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.003
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	0.003

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  145 bits (366), Expect = 1e-44
 Identities = 62/209 (29%), Positives = 94/209 (44%), Gaps = 18/209 (8%)

Query: 1   MKLK-HIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCG 59
           M +K  +E  LQ+L     N K +LEQY T    AA  L  I N+  +I G++V+D G G
Sbjct: 1   MGIKNDLEIRLQKLQ-QQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTG 58

Query: 60  SGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQ 119
           +GIL  GS LLGA+   A + D + ++    N         D             S    
Sbjct: 59  NGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADV------------SEISG 106

Query: 120 KVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDV 179
           K DT IMNPPFG+     D AF+  A + S  +YS+     R+ + ++  A  +V     
Sbjct: 107 KYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRREFSARGDVF---R 163

Query: 180 IAEMKYDLNQSYKFHKKSLHDIEVDLLRI 208
             ++   + + Y+ H      IE  +  +
Sbjct: 164 EEKVYITVPRIYRHHSYDRARIEAVIFGV 192

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  135 bits (341), Expect = 1e-40
 Identities = 79/209 (37%), Positives = 114/209 (54%), Gaps = 14/209 (6%)

Query: 2   KLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSG 61
           + K +   L +L   F NPKV LEQY TP + A+ +L  +  +  DI+GK V DLG G+G
Sbjct: 1   RKKELAIALSKLK-GFKNPKVWLEQYRTPGNAASELLW-LAYSLGDIEGKVVADLGAGTG 58

Query: 62  ILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKV 121
           +L++G++LLGA     +E DKE +D+ I+N  EF+      I         D S F  +V
Sbjct: 59  VLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIG--------DVSEFNSRV 110

Query: 122 DTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLH--KTSTRESILKKIQAFKNVEQVDV 179
           D VIMNPPFG++    D  F+  A +IS VVYS+H  K   R  I K   ++++   V  
Sbjct: 111 DIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKF--SWEHGFVVTH 168

Query: 180 IAEMKYDLNQSYKFHKKSLHDIEVDLLRI 208
               K ++   + FH+K L  I VD+ R 
Sbjct: 169 RLTTKIEIPLQFFFHRKKLERITVDIYRF 197

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 11/143 (7%)

Query: 16  NFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFC 75
            F +  V  EQ      L   +    +          VL+L   +G+ +  +   GA+  
Sbjct: 106 AFRHVGVFPEQIVHWEWLKNAVETADR-------PLKVLNLFGYTGVASLVAAAAGAEVT 158

Query: 76  FALECDKEILDIFIDNK--NEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPP-FGT 132
             ++  K+ +    +N+     E      I  +  +            D ++ +PP FG 
Sbjct: 159 H-VDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGR 217

Query: 133 RNCGIDLAFVQYAADISKVVYSL 155
              G       +   +  +   +
Sbjct: 218 GTHGEVWQLFDHLPLMLDICREI 240

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 17/69 (24%), Positives = 28/69 (40%)

Query: 41  IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNC 100
           I  N +    K VLD+GCG+GIL+  +   GA     ++  + +       +        
Sbjct: 27  IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTI 86

Query: 101 DAILFEINE 109
             I  +I E
Sbjct: 87  TLIKGKIEE 95

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.3 bits (109), Expect = 8e-07
 Identities = 19/95 (20%), Positives = 30/95 (31%)

Query: 41  IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNC 100
           + +N +    K VLD+G G+GIL   +   GA     +EC           K        
Sbjct: 25  MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVV 84

Query: 101 DAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNC 135
             I  ++ E  L        +   +    F     
Sbjct: 85  TIIKGKVEEVELPVEKVDIIISEWMGYCLFYESML 119

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (102), Expect = 6e-06
 Identities = 22/157 (14%), Positives = 49/157 (31%), Gaps = 6/157 (3%)

Query: 41  IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNC 100
           I  N +    K VLD+GCG+GIL+  +   GA     ++    I       +        
Sbjct: 30  IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKI 89

Query: 101 DAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYS------ 154
             +  ++ +  L        +   +             L    +      +++       
Sbjct: 90  TLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIH 149

Query: 155 LHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSY 191
           L      +   +K+  +++V   D    +   L++  
Sbjct: 150 LAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPI 186

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 10/135 (7%)

Query: 6   IEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTF 65
           I + LQ          + +    TP  +   + + ++         ++LD  CG+  L  
Sbjct: 74  IRKGLQLALLKGMKHGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANL-- 131

Query: 66  GSILLGADFCFALECDKEILDIFIDNKNEF-----EITNCDAILFEINEKSLDSSVFKQK 120
              L        L+ D ++    +D  +          +       +  +   +++    
Sbjct: 132 ---LTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDP 188

Query: 121 VDTVIMNPPFGTRNC 135
           VD VI + P G    
Sbjct: 189 VDVVISDLPVGYYPD 203

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 49  DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN 108
             + V+D+  G G L+    + G     A+E D       ++N +  ++ +         
Sbjct: 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDR----MSAY 162

Query: 109 EKSLDSSVFKQKVDTVIMNPPFGTRN 134
                    +   D ++M     T  
Sbjct: 163 NMDNRDFPGENIADRILMGYVVRTHE 188

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 15/106 (14%)

Query: 5   HIEQYLQQLTFNFSNPKVH-LEQY---------HTPPHLAATILHTIQNNYNDIDGKTVL 54
            I  +L  +     +P+ + L+ Y            P+  + +    Q    D    T +
Sbjct: 166 FIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGD----TFM 221

Query: 55  DLGCGSGILTF-GSILLGADFCFALECDKEILDIFIDNKNEFEITN 99
           DLG G G      ++  G    F  E   +  D+ I    E +   
Sbjct: 222 DLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRC 267

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 18/160 (11%)

Query: 33  LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFG-SILLGADFCFALECDKEILDIFIDN 91
           LAA I+  ++          +L LG  +G      + +      +A+E    I+   +D 
Sbjct: 59  LAAAIIKGLKVMPIK-RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDA 117

Query: 92  KNEFEITN----------CDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAF 141
             E E               A + E  +   +      + + +I N  +  +  G  +  
Sbjct: 118 CAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177

Query: 142 VQYAADISKVVYSLHKTSTRESILKKIQA--FKNVEQVDV 179
           ++  +          K    +   + ++A  FK V++VD+
Sbjct: 178 IKARSIDVTK---DPKE-IFKEQKEILEAGGFKIVDEVDI 213

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	100.0
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.98
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.85
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.83
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.81
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.81
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.8
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.8
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.78
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.75
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.75
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.73
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.7
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.69
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.67
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.67
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.66
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.66
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.65
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.65
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.62
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.62
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.62
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.61
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.61
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.6
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.6
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.59
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.58
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.58
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.57
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.57
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.56
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.55
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.55
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.55
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.54
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.54
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.53
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.53
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.53
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.52
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.52
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.52
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.51
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.51
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.5
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.5
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.49
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.47
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.47
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	99.46
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.44
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.44
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.44
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.43
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.43
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.41
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.4
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.39
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.39
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.36
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.36
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.33
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	99.32
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.31
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	99.3
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	99.25
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.2
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.19
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.17
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	99.17
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.13
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.13
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.1
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	99.08
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.08
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.08
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.07
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.99
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.98
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.96
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	98.96
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.91
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.9
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.9
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.85
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.85
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.81
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.81
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.8
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.8
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.71
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.69
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.59
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	98.52
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.42
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.4
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.36
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	98.21
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	98.15
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.07
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	98.06
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.81
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.6
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.5
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.46
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.22
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.97
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.93
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.75
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.73
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.66
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.5
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.37
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.34
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.14
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.06
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.99
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.81
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.81
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.79
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.79
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.6
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.56
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.53
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.51
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.41
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.32
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.32
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.3
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.14
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.04
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.01
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.91
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.75
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.74
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.72
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.72
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.7
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.7
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.64
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.62
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.53
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	93.42
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	93.33
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.29
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.24
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	93.14
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.11
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.85
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.85
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.74
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	92.71
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.64
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.45
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	92.39
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.99
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.9
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.69
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.64
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.59
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.35
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.98
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.69
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	90.68
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	90.24
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.21
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	90.13
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	89.68
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.55
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	89.48
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.57
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.26
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.14
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	88.03
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	87.85
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	87.77
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.58
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	87.28
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.14
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	86.97
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	86.58
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	86.51
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.27
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	86.13
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	85.93
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	85.76
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	85.57
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	84.58
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	84.56
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	83.8
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.76
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	83.68
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.57
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	83.52
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	83.01
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	82.4
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	81.47
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	80.67
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	80.39

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.7e-33  Score=216.03  Aligned_cols=196  Identities=30%  Similarity=0.416  Sum_probs=150.8

Q ss_pred             Cc-hHHHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEe
Q psy17460          1 MK-LKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALE   79 (216)
Q Consensus         1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD   79 (216)
                      |+ +++|+..++++ ..|++|+..++||+||..+++.+++.+... ....|++|||+|||||.+++.++..|+.+|+|+|
T Consensus         1 ~~~k~~l~~~l~~~-~~~~~~~~~leQy~T~~~~a~~~~~~~~~~-~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vD   78 (197)
T d1ne2a_           1 MGIKNDLEIRLQKL-QQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFD   78 (197)
T ss_dssp             CCHHHHHHHHHHTS-CCCC--------CCCCHHHHHHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEE
T ss_pred             CcchHHHHHHHhcC-CCCCCCCcccccCCCCHHHHHHHHHHHHHc-CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccc
Confidence            66 45799999999 999999999999999999999999888776 6678999999999999999999999888999999


Q ss_pred             CChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCc
Q psy17460         80 CDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTS  159 (216)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~  159 (216)
                      +|+.+++.|++|+.     +++++.+|+  .+++     ++||+|++||||+......+..+++.++..+..+|+++..+
T Consensus        79 id~~a~~~ar~N~~-----~~~~~~~D~--~~l~-----~~fD~Vi~NPPfg~~~~~~D~~fl~~a~~~~~~iy~ih~~~  146 (197)
T d1ne2a_          79 IDPDAIETAKRNCG-----GVNFMVADV--SEIS-----GKYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNAK  146 (197)
T ss_dssp             SCHHHHHHHHHHCT-----TSEEEECCG--GGCC-----CCEEEEEECCCC-------CHHHHHHHHHHEEEEEEEEEGG
T ss_pred             cCHHHHHHHHHccc-----cccEEEEeh--hhcC-----CcceEEEeCcccchhhhhchHHHHHHHHhcCCeEEEehhhh
Confidence            99999999999875     689999999  6654     68999999999998777888899999999887799999988


Q ss_pred             chHHHHHHHHHhcCccceeeeeeeecCCCccccccccccceEEEEEEEEeeccC
Q psy17460        160 TRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITSDY  213 (216)
Q Consensus       160 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  213 (216)
                      +.+.+.+.....  . .+....+..+..+..|.+|+++..++.+.+||.+++.|
T Consensus       147 ~~~~i~~~~~~~--~-~~~~~~~~~~~lp~~y~~H~~~~~~i~V~~~rir~~~~  197 (197)
T d1ne2a_         147 ARDFLRREFSAR--G-DVFREEKVYITVPRIYRHHSYDRARIEAVIFGVRNHSF  197 (197)
T ss_dssp             GHHHHHHHHHHH--E-EEEEEEEEEEECCSCCC------CEEEEEEEEEEESCC
T ss_pred             HHHHHHHHhhcC--c-eEEEEeeccCCCchhhhhcccceeEEEEEEEEEecccC
Confidence            887776555443  2 34444556677888999999999999999999999876

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.98  E-value=2.2e-30  Score=200.17  Aligned_cols=196  Identities=37%  Similarity=0.585  Sum_probs=159.4

Q ss_pred             hHHHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCCh
Q psy17460          3 LKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDK   82 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~   82 (216)
                      .|.|+-.++++ .+|.+|+..++||+||.+++..++..+... +..+|++|||+|||||.+++.++..|+.+|+|+|+|+
T Consensus         2 ~~~l~~~l~~~-~~f~~~~~~l~qy~Tp~~~a~~~~~~~~~~-~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~   79 (201)
T d1wy7a1           2 KKELAIALSKL-KGFKNPKVWLEQYRTPGNAASELLWLAYSL-GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK   79 (201)
T ss_dssp             CHHHHHHHHTS-CCCSSCCGGGTCCCCCHHHHHHHHHHHHHT-TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH
T ss_pred             chHHHHHHccC-CCCCCCCcccccCCCCHHHHHHHHHHHHhc-CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcH
Confidence            57899999999 999999999999999999999988777654 6678999999999999999999998888999999999


Q ss_pred             HHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcch-
Q psy17460         83 EILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTR-  161 (216)
Q Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~-  161 (216)
                      .+++.++.|+..++. +.+++.+|+  ..+.     ++||+||+||||+......+..++..++...+.+|+++..... 
T Consensus        80 ~~~~~a~~N~~~~~~-~~~~~~~d~--~~~~-----~~fD~Vi~nPP~~~~~~~~d~~~l~~~~~~~~~v~~ih~~~~~~  151 (201)
T d1wy7a1          80 EAVDVLIENLGEFKG-KFKVFIGDV--SEFN-----SRVDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEV  151 (201)
T ss_dssp             HHHHHHHHHTGGGTT-SEEEEESCG--GGCC-----CCCSEEEECCCCSSSSTTTTHHHHHHHHHHCSEEEEEEECCHHH
T ss_pred             HHHHHHHHHHHHcCC-CceEEECch--hhhC-----CcCcEEEEcCccccccccccHHHHHHHHhhcccchhcccchHHH
Confidence            999999999998887 789999999  6653     6899999999999888888888999999888878888765432 


Q ss_pred             -HHHHHHHHHhcCccceeeeeeeecCCCccccccccccceEEEEEEEEee
Q psy17460        162 -ESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIIT  210 (216)
Q Consensus       162 -~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  210 (216)
                       ..+...+... +. .........+..+..|.+|+++..++.+.+||++|
T Consensus       152 ~~~i~~~~~~~-g~-~i~~~~~~~f~lp~~y~~H~~k~~~i~v~~~Rf~k  199 (201)
T d1wy7a1         152 RRFIEKFSWEH-GF-VVTHRLTTKIEIPLQFFFHRKKLERITVDIYRFSK  199 (201)
T ss_dssp             HHHHHHHHHHT-TE-EEEEEEEEEEEEC-----CCCCCEEEEEEEEEEEE
T ss_pred             HHHHHHHHhhc-Cc-eEEEEEEecccccccccccccccceEEEEEEEEEE
Confidence             2222223332 22 33444455677788889999999999999999987

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.8e-21  Score=144.81  Aligned_cols=155  Identities=15%  Similarity=0.162  Sum_probs=117.1

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEE
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAI  103 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~  103 (216)
                      ....||+..+++.+.+.+...   ..+.+|||++||||.++++++.+|+.+|++||.|+.+++.+++|+...+..+++++
T Consensus        21 ~~~RPt~~~vre~lfn~l~~~---~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii   97 (183)
T d2fpoa1          21 PGLRPTTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVV   97 (183)
T ss_dssp             ------CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCcCcCcHHHHHHHHhhhhcc---cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeee
Confidence            356899999999999998765   37889999999999999999999999999999999999999999998888789999


Q ss_pred             EecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        104 LFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       104 ~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      .+|+  .++... ...+||+||+||||...       .....+....                 ...||.+ +|.+++|+
T Consensus        98 ~~d~--~~~l~~-~~~~fDlIf~DPPY~~~-------~~~~~l~~l~-----------------~~~~L~~-~~iIiiE~  149 (183)
T d2fpoa1          98 NSNA--MSFLAQ-KGTPHNIVFVDPPFRRG-------LLEETINLLE-----------------DNGWLAD-EALIYVES  149 (183)
T ss_dssp             CSCH--HHHHSS-CCCCEEEEEECCSSSTT-------THHHHHHHHH-----------------HTTCEEE-EEEEEEEE
T ss_pred             eecc--cccccc-cccccCEEEEcCccccc-------hHHHHHHHHH-----------------HCCCCCC-CeEEEEEe
Confidence            9999  776533 23789999999999743       1122221111                 2457899 99999987


Q ss_pred             ecC-----CCccc-cccccccceEEEEEEEEe
Q psy17460        184 KYD-----LNQSY-KFHKKSLHDIEVDLLRII  209 (216)
Q Consensus       184 ~~~-----~~~~~-~~~~~~~~~~~~~~~r~~  209 (216)
                      ...     ....| ....+.++++.+.++|.+
T Consensus       150 ~~~~~~~~~~~~~~i~k~k~yG~t~i~~~~k~  181 (183)
T d2fpoa1         150 EVENGLPTVPANWSLHREKVAGQVAYRLYQRE  181 (183)
T ss_dssp             EGGGCSCCCCTTEEEEEEEEETTEEEEEEEEC
T ss_pred             cCcCCcccCCCCcEEEEEEEeCcEEEEEEEEc
Confidence            622     23455 444567789999988754

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.83  E-value=2e-20  Score=141.58  Aligned_cols=152  Identities=19%  Similarity=0.262  Sum_probs=118.5

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEE
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDA  102 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~  102 (216)
                      ....||+..+++.+.+.+...   .+|.+|||++||||.++++++.+|+.+|+++|.|+.+++.+++|++..+.. ++++
T Consensus        19 ~~~RPt~~~vrealFn~l~~~---~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i   95 (182)
T d2fhpa1          19 DNTRPTTDKVKESIFNMIGPY---FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEV   95 (182)
T ss_dssp             CSSCCCCHHHHHHHHHHHCSC---CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEE
T ss_pred             CCcCcCcHHHHHHHHHHHHHh---cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhccccccc
Confidence            467999999999999988643   478999999999999999999999999999999999999999999988876 7999


Q ss_pred             EEecccccccccc--cccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHH--HHhcCcccee
Q psy17460        103 ILFEINEKSLDSS--VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKI--QAFKNVEQVD  178 (216)
Q Consensus       103 ~~~d~~~~~~~~~--~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~--~~~l~~~~g~  178 (216)
                      +.+|+  ..+...  ....+||+||+||||....       +                   ..++...  ..||++ +|.
T Consensus        96 ~~~D~--~~~l~~~~~~~~~fDlIflDPPY~~~~-------~-------------------~~~l~~i~~~~~L~~-~gi  146 (182)
T d2fhpa1          96 RKMDA--NRALEQFYEEKLQFDLVLLDPPYAKQE-------I-------------------VSQLEKMLERQLLTN-EAV  146 (182)
T ss_dssp             EESCH--HHHHHHHHHTTCCEEEEEECCCGGGCC-------H-------------------HHHHHHHHHTTCEEE-EEE
T ss_pred             ccccc--hhhhhhhcccCCCcceEEechhhhhhH-------H-------------------HHHHHHHHHCCCCCC-CEE
Confidence            99999  665422  1235899999999996330       1                   1222222  358899 999


Q ss_pred             eeeeeecCC--C---ccc-cccccccceEEEEEEE
Q psy17460        179 VIAEMKYDL--N---QSY-KFHKKSLHDIEVDLLR  207 (216)
Q Consensus       179 ~~~~~~~~~--~---~~~-~~~~~~~~~~~~~~~r  207 (216)
                      +++|+....  +   ..+ ....+.++.+.+.++|
T Consensus       147 Ii~E~~~~~~~~~~~~~~~~~~~k~YG~t~l~~~r  181 (182)
T d2fhpa1         147 IVCETDKTVKLPETIGTLKKTRETVYGITQVTIYR  181 (182)
T ss_dssp             EEEEEETTCCCCSEETTEEEEEEEEETTEEEEEEE
T ss_pred             EEEEcCCCCCCccCCCceEEEEEEeeCCEEEEEEe
Confidence            999876332  2   223 3445567888888887

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.81  E-value=1.9e-20  Score=137.77  Aligned_cols=142  Identities=19%  Similarity=0.266  Sum_probs=104.9

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccc
Q psy17460         34 AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSL  112 (216)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~  112 (216)
                      ++.+.+.+...   .+|++|||+|||||.++++++.+|+.+|+++|.|+++++.+++|++.++.. +++++++|+  ..+
T Consensus         2 re~~fn~l~~~---~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~--~~~   76 (152)
T d2esra1           2 RGAIFNMIGPY---FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA--ERA   76 (152)
T ss_dssp             HHHHHHHHCSC---CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCH--HHH
T ss_pred             cHHHHHHHHhh---CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccc--ccc
Confidence            45566666543   579999999999999999999999899999999999999999999999887 699999999  665


Q ss_pred             ccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCC--c-
Q psy17460        113 DSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLN--Q-  189 (216)
Q Consensus       113 ~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~--~-  189 (216)
                      ... ..++||+|++||||...       .....+.               .+.  ..++|++ +|.+++|+.....  . 
T Consensus        77 l~~-~~~~fDiIf~DPPy~~~-------~~~~~l~---------------~i~--~~~~L~~-~g~iiiE~~~~~~~~~~  130 (152)
T d2esra1          77 IDC-LTGRFDLVFLDPPYAKE-------TIVATIE---------------ALA--AKNLLSE-QVMVVCETDKTVLLPKE  130 (152)
T ss_dssp             HHH-BCSCEEEEEECCSSHHH-------HHHHHHH---------------HHH--HTTCEEE-EEEEEEEEETTCCCCSE
T ss_pred             ccc-cccccceeEechhhccc-------hHHHHHH---------------HHH--HCCCcCC-CeEEEEEeCCCCCCccc
Confidence            422 23789999999998522       1222221               111  2468899 9999998763321  1 


Q ss_pred             --cc-cccccccceEEEEEE
Q psy17460        190 --SY-KFHKKSLHDIEVDLL  206 (216)
Q Consensus       190 --~~-~~~~~~~~~~~~~~~  206 (216)
                        .+ .+..+.++.+.+.++
T Consensus       131 ~~~~~i~~~k~yG~t~i~~~  150 (152)
T d2esra1         131 IATLGIWKEKIYGISKVTVY  150 (152)
T ss_dssp             ETTEEEEEEEEETTEEEEEE
T ss_pred             CCcceEEEEEecCCEEEEEE
Confidence              23 445556666776665

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=4.5e-20  Score=147.68  Aligned_cols=133  Identities=14%  Similarity=0.157  Sum_probs=101.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .+.+|||+|||+|++++.++...+ .+|+++|+|+.+++.|++|+..+++++++++.+|.  .+....   ++||+|+||
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~--~~~~~~---~~fDlIvsN  182 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW--FSALAG---QQFAMIVSN  182 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST--TGGGTT---CCEEEEEEC
T ss_pred             cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccc--ccccCC---CceeEEEec
Confidence            566899999999999999887654 89999999999999999999999997899999999  775433   699999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhhcCCc--eEEEe-eCcchHHHHHHHHHhcCccceeeeeeeecCCCcc
Q psy17460        128 PPFGTRNCGIDLAFVQYAADISKV--VYSLH-KTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQS  190 (216)
Q Consensus       128 pp~~~~~~~~~~~~~~~~l~~~~~--ly~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  190 (216)
                      |||...   .+.+.+.........  ++.-. .......+++.+.++|++ +|.+++|+++.+...
T Consensus       183 PPYi~~---~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~-~G~l~lEig~~q~~~  244 (274)
T d2b3ta1         183 PPYIDE---QDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS-GGFLLLEHGWQQGEA  244 (274)
T ss_dssp             CCCBCT---TCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE-EEEEEEECCSSCHHH
T ss_pred             chhhhh---hhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC-CCEEEEEECchHHHH
Confidence            999854   122222222222111  22111 112356788889999999 999999999876554

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.80  E-value=3.2e-19  Score=135.02  Aligned_cols=154  Identities=18%  Similarity=0.187  Sum_probs=112.9

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceE
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCD  101 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~  101 (216)
                      ....||+..+++.+.+.+...   ..+.+|||++||||+++++++.+|+.+|+.||.|..+++.+++|++..++.  ...
T Consensus        21 ~~~RPt~~~vrealFn~l~~~---~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~   97 (183)
T d2ifta1          21 EGLRPTGDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAE   97 (183)
T ss_dssp             -------CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEE
T ss_pred             CCcCcCcHHHHHHHHHHhhhh---cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccc
Confidence            356899999999999999764   378899999999999999999999999999999999999999999988775  477


Q ss_pred             EEEecccccccccc-cccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeee
Q psy17460        102 AILFEINEKSLDSS-VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVI  180 (216)
Q Consensus       102 ~~~~d~~~~~~~~~-~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~  180 (216)
                      ++..|+  .++... ....+||+||+||||...       .....+....                 ...||++ +|.++
T Consensus        98 ~~~~d~--~~~l~~~~~~~~fDlIFlDPPY~~~-------~~~~~l~~l~-----------------~~~~L~~-~~lii  150 (183)
T d2ifta1          98 VINQSS--LDFLKQPQNQPHFDVVFLDPPFHFN-------LAEQAISLLC-----------------ENNWLKP-NALIY  150 (183)
T ss_dssp             EECSCH--HHHTTSCCSSCCEEEEEECCCSSSC-------HHHHHHHHHH-----------------HTTCEEE-EEEEE
T ss_pred             cccccc--cccccccccCCcccEEEechhHhhh-------hHHHHHHHHH-----------------HhCCcCC-CcEEE
Confidence            888887  554322 122579999999999743       2223332211                 2458899 99999


Q ss_pred             eeeecCC----Cccc-cccccccceEEEEEEE
Q psy17460        181 AEMKYDL----NQSY-KFHKKSLHDIEVDLLR  207 (216)
Q Consensus       181 ~~~~~~~----~~~~-~~~~~~~~~~~~~~~r  207 (216)
                      +|+....    ...| ....++++++.+.++|
T Consensus       151 iE~~~~~~~~~~~~~~~~k~kkyG~t~i~~~~  182 (183)
T d2ifta1         151 VETEKDKPLITPENWTLLKEKTTGIVSYRLYQ  182 (183)
T ss_dssp             EEEESSSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred             EEecCCCCCCCCCCcEEEEEEecCCEEEEEec
Confidence            9877432    3345 3445677888888886

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=1.8e-19  Score=134.99  Aligned_cols=151  Identities=14%  Similarity=0.177  Sum_probs=109.5

Q ss_pred             cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEe
Q psy17460         26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF  105 (216)
Q Consensus        26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~  105 (216)
                      ..||+..+.+.+.+++...+  .+|.+|||+|||+|.++++++.+|+ +++++|.|+.+++.+++|++.+++. .++...
T Consensus        20 ~Rpt~~~v~e~lf~~l~~~~--~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~-~~v~~~   95 (171)
T d1ws6a1          20 ARPSPVRLRKALFDYLRLRY--PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLG-ARVVAL   95 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC--TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCC-CEEECS
T ss_pred             CCCCcHHHHHHHHHHhhccc--cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccc-cceeee
Confidence            47899999999999988653  3678999999999999999999987 7999999999999999999999884 344444


Q ss_pred             cccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      ++...........++||+||+||||+...   . +.                   ...++  ...||.+ +|.+++++..
T Consensus        96 ~~d~~~~~~~~~~~~fD~If~DPPY~~~~---~-~~-------------------l~~l~--~~~ll~~-~g~ivie~~~  149 (171)
T d1ws6a1          96 PVEVFLPEAKAQGERFTVAFMAPPYAMDL---A-AL-------------------FGELL--ASGLVEA-GGLYVLQHPK  149 (171)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECCCTTSCT---T-HH-------------------HHHHH--HHTCEEE-EEEEEEEEET
T ss_pred             ehhcccccccccCCccceeEEccccccCH---H-HH-------------------HHHHH--HcCCcCC-CeEEEEEecC
Confidence            44113222222336899999999997430   0 00                   11122  2468899 9999998864


Q ss_pred             CCCccccccccccceEEEEEEE
Q psy17460        186 DLNQSYKFHKKSLHDIEVDLLR  207 (216)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~r  207 (216)
                      ...-. ....+.++.+.+.+++
T Consensus       150 ~~~l~-l~~~r~YG~t~i~~~~  170 (171)
T d1ws6a1         150 DLYLP-LGERRVYGENALTLVE  170 (171)
T ss_dssp             TSCCT-TSEEEEETTEEEEEEE
T ss_pred             CCCCC-cCcEEecCCEEEEEEE
Confidence            43222 3445777778877765

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.78  E-value=1.9e-18  Score=131.01  Aligned_cols=95  Identities=15%  Similarity=0.178  Sum_probs=83.1

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEec
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFE  106 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d  106 (216)
                      +|.++++..+++.+..    .++++|||+|||+|.+++.++..+ .+|+|+|+++++++.|++|++.+++. +++++.+|
T Consensus        16 ~t~~eir~~il~~l~~----~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gd   90 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEP----GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD   90 (186)
T ss_dssp             CCCHHHHHHHHHHHCC----CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESC
T ss_pred             CChHHHHHHHHHhcCC----CCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECc
Confidence            7889999988887644    589999999999999999998875 49999999999999999999999986 89999999


Q ss_pred             ccccccccccccCcccEEEEcCCCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      +  .+.+...  +.||.|+++.+.+
T Consensus        91 a--~~~~~~~--~~~D~v~~~~~~~  111 (186)
T d1l3ia_          91 A--PEALCKI--PDIDIAVVGGSGG  111 (186)
T ss_dssp             H--HHHHTTS--CCEEEEEESCCTT
T ss_pred             h--hhccccc--CCcCEEEEeCccc
Confidence            9  6665443  7999999998754

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.75  E-value=8e-18  Score=128.30  Aligned_cols=108  Identities=13%  Similarity=0.215  Sum_probs=86.4

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...++++|||+|||+|.+++.++..++ +|+++|+|+.+++.+++|+..++++  +++++.+|+  .+....   ++||+
T Consensus        49 ~~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~--~~~~~~---~~fD~  122 (194)
T d1dusa_          49 VVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL--YENVKD---RKYNK  122 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST--TTTCTT---SCEEE
T ss_pred             CcCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcch--hhhhcc---CCceE
Confidence            345789999999999999999998765 8999999999999999999988876  589999999  764433   79999


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        124 VIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       124 vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      |+|||||+...                        ...+.+++.+.++|+| +|.+++...
T Consensus       123 Ii~~~p~~~~~------------------------~~~~~~l~~~~~~Lkp-gG~l~i~~~  158 (194)
T d1dusa_         123 IITNPPIRAGK------------------------EVLHRIIEEGKELLKD-NGEIWVVIQ  158 (194)
T ss_dssp             EEECCCSTTCH------------------------HHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred             EEEcccEEecc------------------------hhhhhHHHHHHHhcCc-CcEEEEEEe
Confidence            99999997441                        0123456667777788 777766544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=8.2e-18  Score=131.64  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL  112 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  112 (216)
                      ..+.+++.+    ...+|++|||+|||+|.++..+++.++ +|+|+|+|++|++.|++++...+.+++.++++|+  .++
T Consensus         4 ~~~~l~~~~----~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~--~~~   76 (234)
T d1xxla_           4 SLGLMIKTA----ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA--ESL   76 (234)
T ss_dssp             HHHHHHHHH----TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT--TBC
T ss_pred             HHHHHHHHh----CCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccccccccccccc--ccc
Confidence            344444444    446899999999999999999999875 8999999999999999999998887899999999  666


Q ss_pred             ccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460        113 DSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKV  151 (216)
Q Consensus       113 ~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~  151 (216)
                      ++.+  ++||+|+|.-.+++. +.....+.+.+++++++.
T Consensus        77 ~~~~--~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~  114 (234)
T d1xxla_          77 PFPD--DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGR  114 (234)
T ss_dssp             CSCT--TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             cccc--cccceeeeeceeecccCHHHHHHHHHHeeCCCcE
Confidence            6544  799999998887765 333334445555555555

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.73  E-value=3.3e-17  Score=127.48  Aligned_cols=103  Identities=10%  Similarity=-0.006  Sum_probs=83.2

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ...++++|||+|||+|.++..++..++ +|+|+|+|+++++.|+.++...+.++++++++|+  .++++..  ++||+|+
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~--~~l~~~~--~~fD~v~   86 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA--EQMPFTD--ERFHIVT   86 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC---CCCSCT--TCEEEEE
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccc--ccccccc--ccccccc
Confidence            445789999999999999999999875 8999999999999999999988888999999999  7776543  7999999


Q ss_pred             EcCCCCCC-CCCCCHHHHHHHhhcCCceE
Q psy17460        126 MNPPFGTR-NCGIDLAFVQYAADISKVVY  153 (216)
Q Consensus       126 ~npp~~~~-~~~~~~~~~~~~l~~~~~ly  153 (216)
                      |.-.+++. +.....+.+.+++++++.++
T Consensus        87 ~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  115 (231)
T d1vl5a_          87 CRIAAHHFPNPASFVSEAYRVLKKGGQLL  115 (231)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccccccCCHHHHHHHHHHhcCCCcEEE
Confidence            98888776 43333445555666665533

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=1.9e-16  Score=126.16  Aligned_cols=149  Identities=17%  Similarity=0.161  Sum_probs=104.7

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEe
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILF  105 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~  105 (216)
                      .|.++.+.+..+......    +..+|+|+|||+|++++.++.....+|+++|+|+.+++.|++|++.+++. ++.++.+
T Consensus        92 RpeTE~lv~~~~~~~~~~----~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~  167 (271)
T d1nv8a_          92 RPETEELVELALELIRKY----GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG  167 (271)
T ss_dssp             CTTHHHHHHHHHHHHHHH----TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES
T ss_pred             hhhhhhhhhhhhhhhccc----cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeec
Confidence            344445555555555443    55689999999999999888776689999999999999999999999987 5888999


Q ss_pred             cccccccccccccCcccEEEEcCCCCCCCCCC--CHHHH-HHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNPPFGTRNCGI--DLAFV-QYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~--~~~~~-~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      |+  .+.... ..++||+|++||||...+...  +..+. ..|+..+..        -.+.+.+.+.++|++ +|.+++|
T Consensus       168 ~~--~~~~~~-~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~d--------Gl~~~r~i~~~~L~~-~G~l~~E  235 (271)
T d1nv8a_         168 EF--LEPFKE-KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGED--------GLDFYREFFGRYDTS-GKIVLME  235 (271)
T ss_dssp             ST--TGGGGG-GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTT--------SCHHHHHHHHHCCCT-TCEEEEE
T ss_pred             cc--cccccc-ccCcccEEEEcccccCcccccceeeeeccccccccccc--------hHHHHHHHHHHhcCC-CCEEEEE
Confidence            99  665432 226899999999999652111  00010 123322221        122333445789999 9999999


Q ss_pred             eecCCCccc
Q psy17460        183 MKYDLNQSY  191 (216)
Q Consensus       183 ~~~~~~~~~  191 (216)
                      +++.+...+
T Consensus       236 ig~~Q~~~v  244 (271)
T d1nv8a_         236 IGEDQVEEL  244 (271)
T ss_dssp             CCTTCHHHH
T ss_pred             ECHHHHHHH
Confidence            998876544

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.69  E-value=2.2e-16  Score=126.77  Aligned_cols=118  Identities=9%  Similarity=-0.070  Sum_probs=91.2

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccc
Q psy17460         35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLD  113 (216)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~  113 (216)
                      +.++..+....+..++.+|||+|||+|..+..+++....+|+|+|+|+.+++.|+.+....++. +++++.+|+  .+++
T Consensus        53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~--~~l~  130 (282)
T d2o57a1          53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF--LEIP  130 (282)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT--TSCS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccc--cccc
Confidence            4455555554455688999999999999999988763348999999999999999999998886 799999999  7776


Q ss_pred             cccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        114 SSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       114 ~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      +..  ++||+|++.-.+++.                         .+...+++.+.++|+| +|.+++.
T Consensus       131 ~~~--~sfD~V~~~~~l~h~-------------------------~d~~~~l~~~~~~Lkp-gG~l~~~  171 (282)
T d2o57a1         131 CED--NSYDFIWSQDAFLHS-------------------------PDKLKVFQECARVLKP-RGVMAIT  171 (282)
T ss_dssp             SCT--TCEEEEEEESCGGGC-------------------------SCHHHHHHHHHHHEEE-EEEEEEE
T ss_pred             ccc--cccchhhccchhhhc-------------------------cCHHHHHHHHHHhcCC-CcEEEEE
Confidence            554  799999998776544                         1234555666666677 6666653

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=3.8e-16  Score=122.85  Aligned_cols=112  Identities=11%  Similarity=-0.007  Sum_probs=88.1

Q ss_pred             HHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccC
Q psy17460         41 IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQ  119 (216)
Q Consensus        41 ~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~  119 (216)
                      +...+...+|++|||+|||+|..+..+++.....|+|+|+|+.+++.|+++....++. +++++.+|+  .++...   +
T Consensus        25 l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~--~~~~~~---~   99 (245)
T d1nkva_          25 LGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA--AGYVAN---E   99 (245)
T ss_dssp             HHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC--TTCCCS---S
T ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHH--hhcccc---C
Confidence            3344455689999999999999999888764469999999999999999999999886 699999999  666433   7


Q ss_pred             cccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        120 KVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       120 ~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      +||+|+|.-.+++.                         .+...+++.+.++|+| +|++++..
T Consensus       100 ~fD~v~~~~~~~~~-------------------------~d~~~~l~~~~r~LkP-GG~l~i~~  137 (245)
T d1nkva_         100 KCDVAACVGATWIA-------------------------GGFAGAEELLAQSLKP-GGIMLIGE  137 (245)
T ss_dssp             CEEEEEEESCGGGT-------------------------SSSHHHHHHHTTSEEE-EEEEEEEE
T ss_pred             ceeEEEEEehhhcc-------------------------CCHHHHHHHHHHHcCc-CcEEEEEe
Confidence            99999997666544                         1234566667777788 77777643

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=2.2e-16  Score=124.15  Aligned_cols=108  Identities=18%  Similarity=0.220  Sum_probs=85.1

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ...++++|||+|||||..+..+++.+. +|+|+|+|++|++.|++++...+. +++++++|+  .+++..   ++||+|+
T Consensus        38 ~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~--~~l~~~---~~fD~I~  110 (251)
T d1wzna1          38 AKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDV--LEIAFK---NEFDAVT  110 (251)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCG--GGCCCC---SCEEEEE
T ss_pred             cCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc-cchheehhh--hhcccc---cccchHh
Confidence            445677999999999999999999886 899999999999999999988777 799999999  777655   6899999


Q ss_pred             Ec-CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        126 MN-PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       126 ~n-pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      |. ..+++.                       ........++.+.++|+| +|.++++..
T Consensus       111 ~~~~~~~~~-----------------------~~~~~~~~L~~~~~~Lkp-gG~lii~~~  146 (251)
T d1wzna1         111 MFFSTIMYF-----------------------DEEDLRKLFSKVAEALKP-GGVFITDFP  146 (251)
T ss_dssp             ECSSGGGGS-----------------------CHHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred             hhhhhhhcC-----------------------ChHHHHHHHHHHHHHcCC-CcEEEEEec
Confidence            83 222221                       112334567777888888 888877543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.66  E-value=4.4e-16  Score=122.44  Aligned_cols=117  Identities=16%  Similarity=0.140  Sum_probs=87.5

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc
Q psy17460         35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS  114 (216)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  114 (216)
                      +.+...+...  ..++++|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+. +++++++|+  .+++.
T Consensus        25 ~~~~~~~~~~--~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~--~~~~~   98 (246)
T d1y8ca_          25 DFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDI--SNLNI   98 (246)
T ss_dssp             HHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCG--GGCCC
T ss_pred             HHHHHHHHHh--CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc-cceeeccch--hhhcc
Confidence            3444444432  24567999999999999999999986 899999999999999999988777 799999999  76654


Q ss_pred             ccccCcccEEEEc-CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        115 SVFKQKVDTVIMN-PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       115 ~~~~~~~D~vi~n-pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      .   ++||+|+|. ..+++.                      ....+...+++.+.++|+| +|.++++.
T Consensus        99 ~---~~fD~i~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~Lkp-gG~~i~~~  142 (246)
T d1y8ca_          99 N---RKFDLITCCLDSTNYI----------------------IDSDDLKKYFKAVSNHLKE-GGVFIFDI  142 (246)
T ss_dssp             S---CCEEEEEECTTGGGGC----------------------CSHHHHHHHHHHHHTTEEE-EEEEEEEE
T ss_pred             c---ccccccceeeeeeecc----------------------CCHHHHHHHHHHHHHhCCC-CeEEEEEe
Confidence            4   689999983 222221                      1122345566777888888 88777644

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=9.2e-16  Score=118.37  Aligned_cols=105  Identities=17%  Similarity=0.194  Sum_probs=82.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+++++.|++++...+. ++.++.+|+  .+++...  ++||+|+|.-
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~--~~l~~~~--~~fD~I~~~~  110 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES-NVEFIVGDA--RKLSFED--KTFDYVIFID  110 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCT--TSCCSCT--TCEEEEEEES
T ss_pred             CCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc-ccccccccc--ccccccC--cCceEEEEec
Confidence            567999999999999999999865 899999999999999999887775 688999999  7766544  7999999976


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      .+++.                       +..+...+++.+.++|+| +|.+++..
T Consensus       111 ~l~~~-----------------------~~~d~~~~l~~i~~~Lkp-gG~lii~~  141 (226)
T d1ve3a1         111 SIVHF-----------------------EPLELNQVFKEVRRVLKP-SGKFIMYF  141 (226)
T ss_dssp             CGGGC-----------------------CHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             chhhC-----------------------ChhHHHHHHHHHHHHcCc-CcEEEEEE
Confidence            65543                       111234456666777777 77766543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=2.8e-16  Score=124.33  Aligned_cols=95  Identities=21%  Similarity=0.240  Sum_probs=72.6

Q ss_pred             ccCCHHHHHH-HHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEe
Q psy17460         27 YHTPPHLAAT-ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF  105 (216)
Q Consensus        27 ~~t~~~~~~~-~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~  105 (216)
                      |.|+.|-... ++..+...  ..+|++|||+|||+|.+++.+++.|+ +|+|+|+|+.+++.|+.|++.+++ +++++.+
T Consensus        99 FGTG~H~TT~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~-~~~~~~~  174 (254)
T d2nxca1          99 FGTGHHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV-RPRFLEG  174 (254)
T ss_dssp             ---CCSHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC-CCEEEES
T ss_pred             cCccccchhhHHHHHHHhh--cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCC-ceeEEec
Confidence            4454444333 33434332  25789999999999999999998885 899999999999999999999998 6789999


Q ss_pred             cccccccccccccCcccEEEEcCCC
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      |+  .+....   ++||+|++|..+
T Consensus       175 d~--~~~~~~---~~fD~V~ani~~  194 (254)
T d2nxca1         175 SL--EAALPF---GPFDLLVANLYA  194 (254)
T ss_dssp             CH--HHHGGG---CCEEEEEEECCH
T ss_pred             cc--cccccc---cccchhhhcccc
Confidence            98  554333   799999998643

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.65  E-value=1.7e-15  Score=115.32  Aligned_cols=81  Identities=17%  Similarity=0.152  Sum_probs=72.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|..+..++++|. +|+|+|+|+.+++.++.+....+++++++..+|+  ....+.   ++||+|+|+.
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~--~~~~~~---~~fD~I~~~~  103 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDL--NTLTFD---GEYDFILSTV  103 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT--TTCCCC---CCEEEEEEES
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheec--cccccc---ccccEEEEee
Confidence            456999999999999999999986 8999999999999999999998887899999999  666654   7999999999


Q ss_pred             CCCCCCC
Q psy17460        129 PFGTRNC  135 (216)
Q Consensus       129 p~~~~~~  135 (216)
                      .+++...
T Consensus       104 ~~~~~~~  110 (198)
T d2i6ga1         104 VMMFLEA  110 (198)
T ss_dssp             CGGGSCT
T ss_pred             eeecCCH
Confidence            8887633

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.1e-16  Score=118.93  Aligned_cols=110  Identities=11%  Similarity=0.044  Sum_probs=86.8

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ..++.+|||+|||+|..+..++..+..+|+|+|+|+++++.|++++...+..+++++++|+  .+++...  ++||+|++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~--~~~~~~~--~~fD~I~~  133 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL--QDFTPEP--DSYDVIWI  133 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG--GGCCCCS--SCEEEEEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccc--ccccccc--cccccccc
Confidence            3456799999999999999887766679999999999999999999887766889999999  6665443  79999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      .-.+++..                       ......+++.+.++|+| +|.+++...
T Consensus       134 ~~~l~h~~-----------------------~~~~~~~l~~i~~~Lk~-~G~~~i~~~  167 (222)
T d2ex4a1         134 QWVIGHLT-----------------------DQHLAEFLRRCKGSLRP-NGIIVIKDN  167 (222)
T ss_dssp             ESCGGGSC-----------------------HHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred             ccccccch-----------------------hhhhhhHHHHHHHhcCC-cceEEEEEc
Confidence            77766441                       11123566777888888 888877544

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4e-15  Score=117.42  Aligned_cols=134  Identities=13%  Similarity=0.011  Sum_probs=84.6

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccc----ccccCccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDS----SVFKQKVD  122 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~----~~~~~~~D  122 (216)
                      +..++||+|||+|++++.++... ..+++|+|+|+++++.|++|++.+++. ++.++..+.  .....    ....++||
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~--~~~~~~~~~~~~~~~fD  138 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ--KTLLMDALKEESEIIYD  138 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TCSSTTTSTTCCSCCBS
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeecc--HHhhhhhhhhcccCcee
Confidence            34589999999999998877763 379999999999999999999999987 688888766  33322    12236799


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHhhcCCc-eEEEeeC---------cchHHHHHHHHHhcCccceeeeeeeec
Q psy17460        123 TVIMNPPFGTRNCGIDLAFVQYAADISKV-VYSLHKT---------STRESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       123 ~vi~npp~~~~~~~~~~~~~~~~l~~~~~-ly~~~~~---------~~~~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      +|+|||||.............+....... .......         .-...+++.+..+++. .|.+....+.
T Consensus       139 ~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~-~g~~t~~ig~  210 (250)
T d2h00a1         139 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKR-LRWYSCMLGK  210 (250)
T ss_dssp             EEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGG-BSCEEEEESS
T ss_pred             EEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhc-CcEEEEEecc
Confidence            99999999965211111000111110000 0000000         0145677778888788 8888777774

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=1.1e-15  Score=125.20  Aligned_cols=83  Identities=18%  Similarity=0.195  Sum_probs=73.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc--cccCcccEEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS--VFKQKVDTVI  125 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~--~~~~~~D~vi  125 (216)
                      +|++|||+|||+|.+++.++..|+.+|+++|+|+.+++.++.|+..+++. +++++.+|+  .+....  ..+.+||+|+
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~--~~~~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA--FEEMEKLQKKGEKFDIVV  222 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH--HHHHHHHHHTTCCEEEEE
T ss_pred             CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechh--hhhhHHHHhccCCCCchh
Confidence            68999999999999999999998889999999999999999999999986 799999999  765322  2336899999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      +|||+...
T Consensus       223 ~DpP~~~~  230 (324)
T d2as0a2         223 LDPPAFVQ  230 (324)
T ss_dssp             ECCCCSCS
T ss_pred             cCCccccC
Confidence            99998765

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=3.9e-15  Score=121.90  Aligned_cols=107  Identities=15%  Similarity=0.188  Sum_probs=87.8

Q ss_pred             CcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc----C-C-CEEEEEeCChHHHHHHHHhhh
Q psy17460         20 PKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL----G-A-DFCFALECDKEILDIFIDNKN   93 (216)
Q Consensus        20 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~----~-~-~~v~~iD~~~~~~~~~~~~~~   93 (216)
                      .....+++.||..+.+.|+..+...+...++.+|+|+|||+|.+...+..+    . . .+++|+|+++.++..|+.++.
T Consensus        88 ~~~~~g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~  167 (328)
T d2f8la1          88 HGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD  167 (328)
T ss_dssp             SSCCGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH
T ss_pred             hcccCCeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH
Confidence            445567889999999999888776555567789999999999999887643    1 1 489999999999999999998


Q ss_pred             HhCCCceEEEEecccccccccccccCcccEEEEcCCCCC
Q psy17460         94 EFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGT  132 (216)
Q Consensus        94 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~  132 (216)
                      ..+. +..+..+|.  ......   .+||+|++||||+.
T Consensus       168 ~~~~-~~~~~~~d~--~~~~~~---~~fD~vi~NPPy~~  200 (328)
T d2f8la1         168 LQRQ-KMTLLHQDG--LANLLV---DPVDVVISDLPVGY  200 (328)
T ss_dssp             HHTC-CCEEEESCT--TSCCCC---CCEEEEEEECCCSE
T ss_pred             Hhhh-hhhhhcccc--cccccc---ccccccccCCCCCC
Confidence            8877 678888888  665544   68999999999975

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.61  E-value=1.5e-15  Score=120.56  Aligned_cols=93  Identities=19%  Similarity=0.265  Sum_probs=78.9

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .+|++|||+|||+|.+++.+++.++++|+++|+|+++++.++.|+..+++. +++++++|+  .++...   +.||.|++
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~--~~~~~~---~~~D~Ii~  180 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN--RDFPGE---NIADRILM  180 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT--TTCCCC---SCEEEEEE
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch--HHhccC---CCCCEEEE
Confidence            378999999999999999999988779999999999999999999999997 599999999  877654   68999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        127 NPPFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       127 npp~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      |||....      .++..++...+.
T Consensus       181 ~~p~~~~------~~l~~a~~~l~~  199 (260)
T d2frna1         181 GYVVRTH------EFIPKALSIAKD  199 (260)
T ss_dssp             CCCSSGG------GGHHHHHHHEEE
T ss_pred             CCCCchH------HHHHHHHhhcCC
Confidence            9986533      355555555433

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.60  E-value=3e-15  Score=118.21  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .++++|||+|||+|..+..++..+..+|+|+|+|+++++.|+.+....+.. ++.++++|+  ...+... .++||+|+|
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~--~~~~~~~-~~~fD~V~~   99 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS--YGRHMDL-GKEFDVISS   99 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT--TTSCCCC-SSCEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch--hhhcccc-cccceEEEE
Confidence            368899999999999999998887779999999999999999988776655 799999999  6554321 268999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      .-..++.
T Consensus       100 ~~~l~~~  106 (252)
T d1ri5a_         100 QFSFHYA  106 (252)
T ss_dssp             ESCGGGG
T ss_pred             cceeeec
Confidence            8877764

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.60  E-value=7.6e-15  Score=116.12  Aligned_cols=118  Identities=13%  Similarity=0.005  Sum_probs=89.1

Q ss_pred             HHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccC
Q psy17460         40 TIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQ  119 (216)
Q Consensus        40 ~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  119 (216)
                      .++..++..++.+|||+|||+|.++..++..+...|+++|+++.+++.|++++....  +++++++|+  .+++...  +
T Consensus        84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~d~--~~~~~~~--~  157 (254)
T d1xtpa_          84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP--VGKFILASM--ETATLPP--N  157 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS--EEEEEESCG--GGCCCCS--S
T ss_pred             HHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccc--cceeEEccc--cccccCC--C
Confidence            333444555778999999999999988776656689999999999999998876433  689999999  6666543  7


Q ss_pred             cccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCC
Q psy17460        120 KVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDL  187 (216)
Q Consensus       120 ~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  187 (216)
                      +||+|++...+++..                       ..+...+++.+.++|+| +|.+++......
T Consensus       158 ~fD~I~~~~vl~hl~-----------------------d~d~~~~l~~~~~~Lkp-gG~iii~e~~~~  201 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLT-----------------------DADFVKFFKHCQQALTP-NGYIFFKENCST  201 (254)
T ss_dssp             CEEEEEEESCGGGSC-----------------------HHHHHHHHHHHHHHEEE-EEEEEEEEEBC-
T ss_pred             ccceEEeeccccccc-----------------------hhhhHHHHHHHHHhcCC-CcEEEEEecCCC
Confidence            999999988877551                       11223567778888899 888887655433

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.59  E-value=6.3e-15  Score=118.98  Aligned_cols=106  Identities=13%  Similarity=0.067  Sum_probs=84.9

Q ss_pred             ccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--c
Q psy17460         22 VHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--N   99 (216)
Q Consensus        22 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~   99 (216)
                      .+.+-|+....-+..+...+...   .++.+|||++||||.+++.++..|+ +|++||.|+.+++.|++|+..+++.  +
T Consensus       108 ~~tG~f~dqr~nr~~~~~~~~~~---~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~  183 (309)
T d2igta1         108 RHVGVFPEQIVHWEWLKNAVETA---DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAP  183 (309)
T ss_dssp             SCCSCCGGGHHHHHHHHHHHHHS---SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSC
T ss_pred             CccccccchhHHHHHHHHHHhhc---cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCc
Confidence            34455665556666666666543   3688999999999999999999887 8999999999999999999999886  5


Q ss_pred             eEEEEecccccccccc--cccCcccEEEEcCCCCCC
Q psy17460        100 CDAILFEINEKSLDSS--VFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       100 v~~~~~d~~~~~~~~~--~~~~~~D~vi~npp~~~~  133 (216)
                      ++++.+|+  .++...  .....||+||+|||....
T Consensus       184 ~~~i~~D~--~~~l~~~~~~~~~fD~IilDPP~f~~  217 (309)
T d2igta1         184 IRWICEDA--MKFIQREERRGSTYDIILTDPPKFGR  217 (309)
T ss_dssp             EEEECSCH--HHHHHHHHHHTCCBSEEEECCCSEEE
T ss_pred             EEEEeCCH--HHhHHHHhhcCCCCCEEEECCCcccc
Confidence            99999999  876532  233789999999996544

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=2.9e-15  Score=122.25  Aligned_cols=83  Identities=18%  Similarity=0.147  Sum_probs=71.5

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D~vi  125 (216)
                      .+|++|||+|||+|.+++.++.. ..+|+++|+|+.+++.+++|++.+++.+++++.+|+  .++...  ...++||+|+
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~--~~~~~~~~~~~~~fD~Vi  220 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA--FDLLRRLEKEGERFDLVV  220 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCH--HHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccH--HHHhhhhHhhhcCCCEEE
Confidence            37899999999999999988764 459999999999999999999999998899999999  765322  2236899999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      +|||....
T Consensus       221 ~DpP~~~~  228 (318)
T d1wxxa2         221 LDPPAFAK  228 (318)
T ss_dssp             ECCCCSCC
T ss_pred             EcCCcccc
Confidence            99998765

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=2.8e-14  Score=109.95  Aligned_cols=95  Identities=18%  Similarity=0.195  Sum_probs=77.0

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      +.+.+...+++.+    ...+|++|||+|||+|..+..+++. ++ ..|+++|+++++++.|+.++...+++++.++.+|
T Consensus        59 ~~P~~~a~~l~~l----~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d  134 (213)
T d1dl5a1          59 SQPSLMALFMEWV----GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGD  134 (213)
T ss_dssp             CCHHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             ccchhhHHHHHhh----hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCc
Confidence            3345555555544    4468999999999999999988875 44 7899999999999999999999998899999999


Q ss_pred             ccccccccccccCcccEEEEcCCCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      .  .+.....  ++||+|+++....
T Consensus       135 ~--~~~~~~~--~~fD~I~~~~~~~  155 (213)
T d1dl5a1         135 G--YYGVPEF--SPYDVIFVTVGVD  155 (213)
T ss_dssp             G--GGCCGGG--CCEEEEEECSBBS
T ss_pred             h--HHccccc--cchhhhhhhccHH
Confidence            9  6655443  6899999987654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.57  E-value=7e-15  Score=119.73  Aligned_cols=83  Identities=18%  Similarity=0.225  Sum_probs=71.5

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccc--cccCcccEE
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSS--VFKQKVDTV  124 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~--~~~~~~D~v  124 (216)
                      +|++|||++||+|.+++.++..|+..|+++|+|+.+++.++.|++.+++.  +++++.+|+  .++...  ...++||+|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~--~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV--FDYFKYARRHHLTYDII  221 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH--HHHHHHHHHTTCCEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccH--HHHHHHHHhhcCCCCEE
Confidence            68999999999999999999888889999999999999999999999985  699999999  776432  233689999


Q ss_pred             EEcCCCCCC
Q psy17460        125 IMNPPFGTR  133 (216)
Q Consensus       125 i~npp~~~~  133 (216)
                      |+|||....
T Consensus       222 i~DPP~f~~  230 (317)
T d2b78a2         222 IIDPPSFAR  230 (317)
T ss_dssp             EECCCCC--
T ss_pred             EEcChhhcc
Confidence            999996544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=2.8e-14  Score=114.29  Aligned_cols=121  Identities=12%  Similarity=0.114  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEK  110 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~  110 (216)
                      ......+..+...+...+|++|||+|||+|.++..+++....+|+|+|+|+++++.|++.+...++. ++.+...|.  .
T Consensus        35 ~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~--~  112 (280)
T d2fk8a1          35 EAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW--E  112 (280)
T ss_dssp             HHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG--G
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhh--h
Confidence            4445667777777777899999999999999998888763359999999999999999999988876 688888888  5


Q ss_pred             ccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      +.+     ++||.|++--.+.+...                       .....+++.+.++|+| +|+++++.
T Consensus       113 ~~~-----~~fD~i~si~~~eh~~~-----------------------~~~~~~f~~i~~~Lkp-gG~~~i~~  156 (280)
T d2fk8a1         113 DFA-----EPVDRIVSIEAFEHFGH-----------------------ENYDDFFKRCFNIMPA-DGRMTVQS  156 (280)
T ss_dssp             GCC-----CCCSEEEEESCGGGTCG-----------------------GGHHHHHHHHHHHSCT-TCEEEEEE
T ss_pred             hhc-----cchhhhhHhhHHHHhhh-----------------------hhHHHHHHHHHhccCC-CceEEEEE
Confidence            554     79999999776655411                       1224566667777788 77777754

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=8.5e-14  Score=115.06  Aligned_cols=134  Identities=15%  Similarity=0.175  Sum_probs=103.3

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      |+......+.++..+...+...++.+|||+.||+|.+++.+++.+ .+|+|+|+++.+++.|+.|+..+++.|++++.+|
T Consensus       190 fQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~  268 (358)
T d1uwva2         190 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN  268 (358)
T ss_dssp             CCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             hccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecc
Confidence            344456778888888877676788899999999999999999875 4999999999999999999999999999999999


Q ss_pred             cccccccc--ccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeCcchHHHHHHHHHh
Q psy17460        107 INEKSLDS--SVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus       107 ~~~~~~~~--~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~~~~~~~~~~~~~~  171 (216)
                      +  .+...  ......+|+|+.|||    +.+.+ +.+...++....  +|.-+.   +..+.+....+
T Consensus       269 ~--~~~~~~~~~~~~~~d~vilDPP----R~G~~-~~~~~l~~~~~~~ivYVSCn---p~TlaRDl~~l  327 (358)
T d1uwva2         269 L--EEDVTKQPWAKNGFDKVLLDPA----RAGAA-GVMQQIIKLEPIRIVYVSCN---PATLARDSEAL  327 (358)
T ss_dssp             T--TSCCSSSGGGTTCCSEEEECCC----TTCCH-HHHHHHHHHCCSEEEEEESC---HHHHHHHHHHH
T ss_pred             h--hhhhhhhhhhhccCceEEeCCC----CccHH-HHHHHHHHcCCCEEEEEeCC---HHHHHHHHHHH
Confidence            9  44322  222367999999999    67765 467766665544  776653   34444444444

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.55  E-value=1.4e-14  Score=113.90  Aligned_cols=127  Identities=20%  Similarity=0.119  Sum_probs=90.9

Q ss_pred             HHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhC-CCceEEEEeccccccccccc
Q psy17460         40 TIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFE-ITNCDAILFEINEKSLDSSV  116 (216)
Q Consensus        40 ~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~  116 (216)
                      .+...+...+|.+|||+|||+|.++..+++. ++ ++|+++|.++++++.|++|++.++ ..++++..+|+  .+.... 
T Consensus        76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di--~~~~~~-  152 (250)
T d1yb2a1          76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI--ADFISD-  152 (250)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT--TTCCCS-
T ss_pred             HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeee--eccccc-
Confidence            3444446679999999999999999998875 44 799999999999999999998764 44899999999  665443 


Q ss_pred             ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceee
Q psy17460        117 FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDV  179 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~  179 (216)
                        +.||.|++|.|-    +....+...+++++++.+.+..++  .+.+.+.... |.. .|+.
T Consensus       153 --~~fD~V~ld~p~----p~~~l~~~~~~LKpGG~lv~~~P~--i~Qv~~~~~~-l~~-~gf~  205 (250)
T d1yb2a1         153 --QMYDAVIADIPD----PWNHVQKIASMMKPGSVATFYLPN--FDQSEKTVLS-LSA-SGMH  205 (250)
T ss_dssp             --CCEEEEEECCSC----GGGSHHHHHHTEEEEEEEEEEESS--HHHHHHHHHH-SGG-GTEE
T ss_pred             --ceeeeeeecCCc----hHHHHHHHHHhcCCCceEEEEeCC--cChHHHHHHH-HHH-CCCc
Confidence              689999999873    344566677788887765444433  3334333333 344 4543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.55  E-value=4.2e-14  Score=109.55  Aligned_cols=80  Identities=14%  Similarity=0.234  Sum_probs=66.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc---CCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL---GADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~---~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      .++.+|||+|||||..+..+++.   ...+|+|+|+|++|++.|++++...+.. ++++..+|+  .+.+.    +.+|+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~--~~~~~----~~~d~  111 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI--RHVEI----KNASM  111 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT--TTCCC----CSEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh--hcccc----cccee
Confidence            36789999999999999998875   2269999999999999999998776654 688899999  77664    58899


Q ss_pred             EEEcCCCCCC
Q psy17460        124 VIMNPPFGTR  133 (216)
Q Consensus       124 vi~npp~~~~  133 (216)
                      |+|+--+++.
T Consensus       112 i~~~~~l~~~  121 (225)
T d1im8a_         112 VILNFTLQFL  121 (225)
T ss_dssp             EEEESCGGGS
T ss_pred             eEEeeecccc
Confidence            9998776655

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.55  E-value=2.5e-14  Score=114.64  Aligned_cols=103  Identities=16%  Similarity=0.164  Sum_probs=81.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .++.+|||+|||+|..+..++...+  .+|+|+|+|+.+++.|+++....+. +++++.+|+  .++++.   ++||+|+
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~--~~~~~~---~~fD~v~   99 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDA--TEIELN---DKYDIAI   99 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCT--TTCCCS---SCEEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-ccccccccc--cccccc---CCceEEE
Confidence            4678999999999999999887532  5899999999999999999988776 899999999  666654   6899999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        126 MNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       126 ~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      |+..+++..                         ++..+++.+.++|+| +|.++..
T Consensus       100 ~~~~l~~~~-------------------------d~~~~l~~~~~~Lkp-gG~lii~  130 (281)
T d2gh1a1         100 CHAFLLHMT-------------------------TPETMLQKMIHSVKK-GGKIICF  130 (281)
T ss_dssp             EESCGGGCS-------------------------SHHHHHHHHHHTEEE-EEEEEEE
T ss_pred             EehhhhcCC-------------------------CHHHHHHHHHHHcCc-CcEEEEE
Confidence            988776551                         234455666666677 6666543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=7.7e-14  Score=114.14  Aligned_cols=81  Identities=21%  Similarity=0.276  Sum_probs=69.1

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .+|++|||+|||+|.+++.+++.|+.+|+|+|.++ ++..|+++...++.. +++++.+|+  .+++...  ++||+|++
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~--~~l~~~~--~~~D~i~s  111 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL--EDVHLPF--PKVDIIIS  111 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT--TTSCCSS--SCEEEEEE
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh--hhccCcc--cceeEEEE
Confidence            37899999999999999999999988999999996 678888888888776 799999999  5554432  79999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      .+.....
T Consensus       112 e~~~~~~  118 (328)
T d1g6q1_         112 EWMGYFL  118 (328)
T ss_dssp             CCCBTTB
T ss_pred             Eecceee
Confidence            8876655

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.7e-14  Score=114.57  Aligned_cols=82  Identities=24%  Similarity=0.272  Sum_probs=66.5

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ..++++|||+|||+|.+++.+++.|+.+|+|+|.++.+.. ++++...++.. +++++.+|+  .++....  ++||+|+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~--~~l~~~~--~~~D~Iv  107 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKI--EEVHLPV--EKVDVII  107 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCT--TTSCCSC--SCEEEEE
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeH--HHhcCcc--ccceEEE
Confidence            3578999999999999999999999889999999998765 45555455543 799999999  6655433  6999999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      +.+..+..
T Consensus       108 se~~~~~~  115 (311)
T d2fyta1         108 SEWMGYFL  115 (311)
T ss_dssp             ECCCBTTB
T ss_pred             Eeeeeeec
Confidence            98877655

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.53  E-value=4.3e-14  Score=109.55  Aligned_cols=76  Identities=12%  Similarity=0.066  Sum_probs=64.6

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .++.+|||+|||+|.++..++..|. +|+|+|+|+++++.|+.+...    +++++.+|+  .+.+..   ++||+|+|.
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~----~~~~~~~~~--~~~~~~---~~fD~I~~~   88 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----GITYIHSRF--EDAQLP---RRYDNIVLT   88 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----CEEEEESCG--GGCCCS---SCEEEEEEE
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccc----ccccccccc--cccccc---ccccccccc
Confidence            4677899999999999999998875 899999999999999987643    799999999  565543   799999998


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      -.+++.
T Consensus        89 ~vleh~   94 (225)
T d2p7ia1          89 HVLEHI   94 (225)
T ss_dssp             SCGGGC
T ss_pred             ceeEec
Confidence            777655

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.6e-14  Score=112.54  Aligned_cols=80  Identities=14%  Similarity=0.135  Sum_probs=66.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      +|.+|||+|||+|..+..+++.++.+++|+|+|+.+++.|+++....+. ++.++.+|+  .........++||.|+.|.
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~fD~i~fD~  129 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLW--EDVAPTLPDGHFDGILYDT  129 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCH--HHHGGGSCTTCEEEEEECC
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc-ccccccccc--cccccccccccccceeecc
Confidence            6889999999999999999987667899999999999999999877665 788899988  5544333337999999887


Q ss_pred             CCC
Q psy17460        129 PFG  131 (216)
Q Consensus       129 p~~  131 (216)
                      ...
T Consensus       130 ~~~  132 (229)
T d1zx0a1         130 YPL  132 (229)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=4.2e-14  Score=115.19  Aligned_cols=81  Identities=25%  Similarity=0.287  Sum_probs=67.5

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      .+|++|||+|||+|.+++.+++.|+.+|+|+|.++. ...+++++..+++. +++++.+|+  .+++...  ++||+|++
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~--~~~~~~~--~~~D~ivs  106 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKV--EEVELPV--EKVDIIIS  106 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCT--TTCCCSS--SCEEEEEE
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccH--HHccccc--ceeEEEee
Confidence            378999999999999999999999889999999975 56777778777776 699999999  6665443  79999999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      ....+..
T Consensus       107 ~~~~~~l  113 (316)
T d1oria_         107 EWMGYCL  113 (316)
T ss_dssp             CCCBBTB
T ss_pred             eeeeeee
Confidence            8765544

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-13  Score=107.36  Aligned_cols=102  Identities=20%  Similarity=0.245  Sum_probs=80.7

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCC----
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEI----   97 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~----   97 (216)
                      .+++.+.+++...+++.+..  ...+|++|||+|||+|..+..+++. ++ .+|+++|+++++++.|++++...+.    
T Consensus        53 ~~~~is~P~~~a~~le~L~~--~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~  130 (224)
T d1i1na_          53 FQATISAPHMHAYALELLFD--QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS  130 (224)
T ss_dssp             TTEEECCHHHHHHHHHHTTT--TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHH
T ss_pred             chhhhhhhHHHHHHHHHHhh--ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccc
Confidence            35667777787778776643  2257899999999999999887775 54 6999999999999999999987653    


Q ss_pred             -CceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460         98 -TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus        98 -~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                       .++.++.+|.  .......  .+||+|+++....
T Consensus       131 ~~~~~~~~gD~--~~~~~~~--~~fD~I~~~~~~~  161 (224)
T d1i1na_         131 SGRVQLVVGDG--RMGYAEE--APYDAIHVGAAAP  161 (224)
T ss_dssp             TSSEEEEESCG--GGCCGGG--CCEEEEEECSBBS
T ss_pred             ccceEEEEeec--ccccchh--hhhhhhhhhcchh
Confidence             3689999999  7665543  7999999976543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=1.4e-13  Score=110.34  Aligned_cols=119  Identities=13%  Similarity=0.121  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEK  110 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~  110 (216)
                      +....+++.+...+...+|.+|||+|||.|.+++.+++...++|+|+.+|+++++.|++.+...++. ++++..+|.  .
T Consensus        45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~--~  122 (285)
T d1kpga_          45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW--E  122 (285)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG--G
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhh--h
Confidence            5556777888887788899999999999999999877653359999999999999999998887766 799999999  6


Q ss_pred             ccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA  181 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~  181 (216)
                      +++     ++||.|++--.+.+..                       ......+++.+.++|+| +|++++
T Consensus       123 ~~~-----~~fD~i~si~~~eh~~-----------------------~~~~~~~~~~~~r~Lkp-gG~~~l  164 (285)
T d1kpga_         123 QFD-----EPVDRIVSIGAFEHFG-----------------------HERYDAFFSLAHRLLPA-DGVMLL  164 (285)
T ss_dssp             GCC-----CCCSEEEEESCGGGTC-----------------------TTTHHHHHHHHHHHSCT-TCEEEE
T ss_pred             ccc-----ccccceeeehhhhhcC-----------------------chhHHHHHHHHHhhcCC-CCcEEE
Confidence            664     6899999866655431                       11224566677777888 777765

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=1.5e-13  Score=110.46  Aligned_cols=126  Identities=14%  Similarity=0.106  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEK  110 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~  110 (216)
                      +..+.++..+...+...+|.+|||+|||.|.++..+++...++|+|+++|+++++.++..+...++. .+++...|.  .
T Consensus        44 ~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~--~  121 (291)
T d1kpia_          44 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW--E  121 (291)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG--G
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc--c
Confidence            4556777788777788899999999999999999887653359999999999999999999988886 588888888  4


Q ss_pred             ccccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE  182 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  182 (216)
                      ...     ++||.|++.-.|.+. +....                 ....-...+++.+.++|+| +|+++++
T Consensus       122 ~~~-----~~fD~i~sie~~eH~~~~~~~-----------------~~~~~~~~~f~~i~~~Lkp-gG~~~l~  171 (291)
T d1kpia_         122 EFD-----EPVDRIVSLGAFEHFADGAGD-----------------AGFERYDTFFKKFYNLTPD-DGRMLLH  171 (291)
T ss_dssp             GCC-----CCCSEEEEESCGGGTTCCSSC-----------------CSTTHHHHHHHHHHHTSCT-TCEEEEE
T ss_pred             ccc-----cccceEeechhHHhcchhhhh-----------------hHHHHHHHHHHHHHHhCCC-CCceEEE
Confidence            332     799999998877665 21100                 0001134567777888888 8888764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=2.3e-14  Score=111.74  Aligned_cols=69  Identities=19%  Similarity=0.184  Sum_probs=57.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.|+.+..      ..++.+|+  .++++..  ++||+|+|.-
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~------~~~~~~~~--~~l~~~~--~~fD~ii~~~  110 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV------KNVVEAKA--EDLPFPS--GAFEAVLALG  110 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC------SCEEECCT--TSCCSCT--TCEEEEEECS
T ss_pred             CCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc------cccccccc--ccccccc--ccccceeeec
Confidence            677999999999999999999876 89999999999999988642      23678999  6665543  7999999843

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.51  E-value=1.3e-13  Score=109.11  Aligned_cols=112  Identities=18%  Similarity=0.127  Sum_probs=87.7

Q ss_pred             HHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhC---CCceEEEEeccccccccc
Q psy17460         40 TIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFE---ITNCDAILFEINEKSLDS  114 (216)
Q Consensus        40 ~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~---~~~v~~~~~d~~~~~~~~  114 (216)
                      .+...+...+|.+|||+|||+|.++..+++. ++ ++|+++|+++++++.|++|++...   ..++.++.+|+  .+...
T Consensus        87 ~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~--~~~~~  164 (264)
T d1i9ga_          87 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL--ADSEL  164 (264)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG--GGCCC
T ss_pred             HHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc--ccccc
Confidence            3333445569999999999999999998886 65 799999999999999999998642   33899999999  65544


Q ss_pred             ccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCc
Q psy17460        115 SVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTS  159 (216)
Q Consensus       115 ~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~  159 (216)
                      ..  ++||.||+|.|    ++-...+...+++++++.+.++.++-
T Consensus       165 ~~--~~fDaV~ldlp----~P~~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         165 PD--GSVDRAVLDML----APWEVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             CT--TCEEEEEEESS----CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             cC--CCcceEEEecC----CHHHHHHHHHhccCCCCEEEEEeCcc
Confidence            33  79999999987    44456667888888888765555443

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.50  E-value=4.5e-14  Score=106.36  Aligned_cols=84  Identities=12%  Similarity=0.029  Sum_probs=67.4

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC------------CceEEEEecccccccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI------------TNCDAILFEINEKSLD  113 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~------------~~v~~~~~d~~~~~~~  113 (216)
                      ...+|.+|||+|||+|..+..++++|. .|+|+|+|+++++.|+++++..+.            .+++++.+|+  .+++
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~l~   93 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF--FALT   93 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC--SSST
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc--cccc
Confidence            335889999999999999999999986 999999999999999998755321            1468999999  7765


Q ss_pred             cccccCcccEEEEcCCCCCC
Q psy17460        114 SSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       114 ~~~~~~~~D~vi~npp~~~~  133 (216)
                      ... ...||+|++.-.++..
T Consensus        94 ~~~-~~~~D~i~~~~~l~~l  112 (201)
T d1pjza_          94 ARD-IGHCAAFYDRAAMIAL  112 (201)
T ss_dssp             HHH-HHSEEEEEEESCGGGS
T ss_pred             ccc-ccceeEEEEEeeeEec
Confidence            432 1589999987766544

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.50  E-value=1.9e-13  Score=105.81  Aligned_cols=129  Identities=18%  Similarity=0.072  Sum_probs=93.1

Q ss_pred             ccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEE
Q psy17460         25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAIL  104 (216)
Q Consensus        25 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~  104 (216)
                      ++..+..++...|++.+.    ..++.+|||+|||+|.++..+++.+ .+|+++|+++++++.|++++...  .|+.++.
T Consensus        50 g~~~~~p~~~a~ml~~L~----l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~--~nv~~~~  122 (224)
T d1vbfa_          50 GINTTALNLGIFMLDELD----LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY--NNIKLIL  122 (224)
T ss_dssp             TEEECCHHHHHHHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC--SSEEEEE
T ss_pred             CCceehhhhHHHHHHHhh----hcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc--ccccccc
Confidence            445556666666665553    4589999999999999998888885 59999999999999999987653  3899999


Q ss_pred             ecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460        105 FEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK  184 (216)
Q Consensus       105 ~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  184 (216)
                      +|.  .......  ++||.|+++......                           +..    ..+.|++ +|++++-.+
T Consensus       123 ~d~--~~g~~~~--~pfD~Iiv~~a~~~i---------------------------p~~----l~~qLk~-GGrLV~pvg  166 (224)
T d1vbfa_         123 GDG--TLGYEEE--KPYDRVVVWATAPTL---------------------------LCK----PYEQLKE-GGIMILPIG  166 (224)
T ss_dssp             SCG--GGCCGGG--CCEEEEEESSBBSSC---------------------------CHH----HHHTEEE-EEEEEEEEC
T ss_pred             Cch--hhcchhh--hhHHHHHhhcchhhh---------------------------hHH----HHHhcCC-CCEEEEEEc
Confidence            998  6643332  789999987653311                           111    2456789 999998766


Q ss_pred             cCCCccc-ccccc
Q psy17460        185 YDLNQSY-KFHKK  196 (216)
Q Consensus       185 ~~~~~~~-~~~~~  196 (216)
                      ....+.+ .+.+.
T Consensus       167 ~~~~q~l~~i~k~  179 (224)
T d1vbfa_         167 VGRVQKLYKVIKK  179 (224)
T ss_dssp             SSSSEEEEEEECC
T ss_pred             CCCceEEEEEEEE
Confidence            5444433 44443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.9e-13  Score=106.23  Aligned_cols=100  Identities=15%  Similarity=0.004  Sum_probs=74.8

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC-----------------CCceEEEEeccccc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE-----------------ITNCDAILFEINEK  110 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~-----------------~~~v~~~~~d~~~~  110 (216)
                      .++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.|+.......                 ..+++++++|+  .
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~--~  120 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI--F  120 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG--G
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch--h
Confidence            4788999999999999999999987 89999999999999988754321                 12689999999  7


Q ss_pred             ccccccccCcccEEEEcCCCCCCCCCCCHHH---HHHHhhcCCc
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTRNCGIDLAF---VQYAADISKV  151 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~---~~~~l~~~~~  151 (216)
                      +++... .+.||+|+..-.++...+.....+   +.+++++++.
T Consensus       121 ~l~~~~-~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~  163 (229)
T d2bzga1         121 DLPRTN-IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQ  163 (229)
T ss_dssp             GGGGSC-CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEE
T ss_pred             hccccc-cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcce
Confidence            775432 268999999888877633332333   3344444444

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.2e-13  Score=107.36  Aligned_cols=104  Identities=17%  Similarity=0.141  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEK  110 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  110 (216)
                      .+.+.++..+...+ ..++.+|||+|||+|.++..++..++ ..++|+|+|+.+++.|+++..     +++++.+|+  .
T Consensus        68 ~l~~~~~~~l~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~-----~~~~~~~d~--~  139 (268)
T d1p91a_          68 PLRDAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-----QVTFCVASS--H  139 (268)
T ss_dssp             HHHHHHHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-----TSEEEECCT--T
T ss_pred             HHHHHHHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc-----cccceeeeh--h
Confidence            45556655555543 34667999999999999999998865 699999999999999887643     789999999  7


Q ss_pred             ccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      ++++..  ++||+|++....++      .+-+.+++++++.
T Consensus       140 ~l~~~~--~sfD~v~~~~~~~~------~~e~~rvLkpgG~  172 (268)
T d1p91a_         140 RLPFSD--TSMDAIIRIYAPCK------AEELARVVKPGGW  172 (268)
T ss_dssp             SCSBCT--TCEEEEEEESCCCC------HHHHHHHEEEEEE
T ss_pred             hccCCC--CCEEEEeecCCHHH------HHHHHHHhCCCcE
Confidence            777654  79999998654332      2345555665555

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.47  E-value=5.6e-13  Score=102.43  Aligned_cols=99  Identities=19%  Similarity=0.181  Sum_probs=81.0

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEE
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAI  103 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~  103 (216)
                      .+++.+.+++...|++.+..    .++.+|||+|||||..+..++..-..+|+++|.++++++.++.++...+..|+.++
T Consensus        57 ~g~~is~P~~~a~ml~~L~l----~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~  132 (215)
T d1jg1a_          57 AGQTVSAPHMVAIMLEIANL----KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVI  132 (215)
T ss_dssp             TTCEECCHHHHHHHHHHHTC----CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             hhhhhhhhhhHHHHHHhhcc----CccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEE
Confidence            44566666777777776653    58999999999999999888865224799999999999999999999998899999


Q ss_pred             EecccccccccccccCcccEEEEcCCC
Q psy17460        104 LFEINEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus       104 ~~d~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      .+|.  .+.....  .+||.|++....
T Consensus       133 ~gd~--~~g~~~~--~pfD~Iiv~~a~  155 (215)
T d1jg1a_         133 LGDG--SKGFPPK--APYDVIIVTAGA  155 (215)
T ss_dssp             ESCG--GGCCGGG--CCEEEEEECSBB
T ss_pred             ECcc--ccCCccc--CcceeEEeeccc
Confidence            9999  7654433  799999987654

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.46  E-value=9.9e-14  Score=117.28  Aligned_cols=158  Identities=20%  Similarity=0.235  Sum_probs=109.4

Q ss_pred             CCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC--------------CEEEEEeCChHH
Q psy17460         19 NPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA--------------DFCFALECDKEI   84 (216)
Q Consensus        19 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~--------------~~v~~iD~~~~~   84 (216)
                      ..+...|+|.||.++...|+..+..    .++.+|+|++||+|.+.+.+.++..              ..++|+|+++.+
T Consensus       136 ~~~k~~G~f~TP~~Iv~~mv~ll~~----~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~  211 (425)
T d2okca1         136 DKKSGAGQYFTPRPLIQAMVDCINP----QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLV  211 (425)
T ss_dssp             CTTTCCGGGCCCHHHHHHHHHHHCC----CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHH
T ss_pred             hhhccchhhccchhhhHhhheeccC----cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHH
Confidence            4566789999999999999987754    3678999999999999988766410              259999999999


Q ss_pred             HHHHHHhhhHhCCC--ceEEEEecccccccccccccCcccEEEEcCCCCCCCCC---------------CCHHHHHHHhh
Q psy17460         85 LDIFIDNKNEFEIT--NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCG---------------IDLAFVQYAAD  147 (216)
Q Consensus        85 ~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~---------------~~~~~~~~~l~  147 (216)
                      ...|+.|+...+..  +..+..+|.  ......   .+||+|++||||+.....               .+.-|+..++.
T Consensus       212 ~~la~~n~~l~g~~~~~~~i~~~d~--l~~~~~---~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~  286 (425)
T d2okca1         212 VTLASMNLYLHGIGTDRSPIVCEDS--LEKEPS---TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMML  286 (425)
T ss_dssp             HHHHHHHHHHTTCCSSCCSEEECCT--TTSCCS---SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHH
T ss_pred             HHHHHhhhhhcCCccccceeecCch--hhhhcc---cccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHH
Confidence            99999999887764  467889999  665543   689999999999764110               12346666665


Q ss_pred             cCCc---eEEEeeCcch--HHHHHHHHHhcCccceeeeeeeecC
Q psy17460        148 ISKV---VYSLHKTSTR--ESILKKIQAFKNVEQVDVIAEMKYD  186 (216)
Q Consensus       148 ~~~~---ly~~~~~~~~--~~~~~~~~~~l~~~~g~~~~~~~~~  186 (216)
                      .++.   +-.+.+.+..  ....+..+++|-. ++.+..-..++
T Consensus       287 ~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~-~~~i~aIi~LP  329 (425)
T d2okca1         287 MLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQ-DFNLHTILRLP  329 (425)
T ss_dssp             HEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHH-HEEEEEEEECC
T ss_pred             hcCCCCeEEEEechHHhhhhhhHHHHHHHHHH-hcchhHhhcCC
Confidence            5544   4444443321  1122334555544 44444433333

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.44  E-value=6.4e-13  Score=101.42  Aligned_cols=105  Identities=13%  Similarity=0.059  Sum_probs=81.3

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++-.|||+|||+|..+..+|+..+ ..++|+|+++.++..|..++...+++|+.++.+|+  ..+......+++|.|+++
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da--~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA--DTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG--GGHHHHCCTTSCCEEEEE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccch--hhhhcccCchhhhccccc
Confidence            345899999999999999998866 89999999999999999999999998999999999  665422233789999887


Q ss_pred             CCCCCC------CCCCC---HHHHHHHhhcCCceEEE
Q psy17460        128 PPFGTR------NCGID---LAFVQYAADISKVVYSL  155 (216)
Q Consensus       128 pp~~~~------~~~~~---~~~~~~~l~~~~~ly~~  155 (216)
                      -|-.+.      .+-..   .+.+.+++++++.++..
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            665544      12122   34455777777765543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.44  E-value=5.6e-13  Score=102.20  Aligned_cols=83  Identities=18%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             cCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-cccCccc
Q psy17460         45 YNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-VFKQKVD  122 (216)
Q Consensus        45 ~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~D  122 (216)
                      +...+|.+|||+|||+|..+..++.. +.++|+|+|+++.+++.++++++..+  |+.++.+|+  ...... .....+|
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~--~~~~~~~~~~~~vd  127 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDA--SKPWKYSGIVEKVD  127 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCT--TCGGGTTTTCCCEE
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeec--cCccccccccceEE
Confidence            45678999999999999999998886 34799999999999999999987765  899999999  443322 1124678


Q ss_pred             EEEEcCCCC
Q psy17460        123 TVIMNPPFG  131 (216)
Q Consensus       123 ~vi~npp~~  131 (216)
                      +|+++.+..
T Consensus       128 ~v~~~~~~~  136 (209)
T d1nt2a_         128 LIYQDIAQK  136 (209)
T ss_dssp             EEEECCCST
T ss_pred             EEEecccCh
Confidence            888876544

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=2.4e-12  Score=101.98  Aligned_cols=109  Identities=17%  Similarity=0.161  Sum_probs=86.6

Q ss_pred             HHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccc
Q psy17460         41 IQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVF  117 (216)
Q Consensus        41 ~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~  117 (216)
                      +...+...+|++|||+|||+|.++..+++. ++ ++|+++|+++++++.|++|+...++. ++.+..+|+  ......  
T Consensus        95 Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~--~~~~~~--  170 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI--SEGFDE--  170 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG--GGCCSC--
T ss_pred             HHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc--cccccc--
Confidence            333345569999999999999999999876 44 79999999999999999999998875 799999998  554433  


Q ss_pred             cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeC
Q psy17460        118 KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKT  158 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~  158 (216)
                       ..||.|+.+.|    +.....+.+.+++++++.+.+..++
T Consensus       171 -~~~D~V~~d~p----~p~~~l~~~~~~LKpGG~lv~~~P~  206 (266)
T d1o54a_         171 -KDVDALFLDVP----DPWNYIDKCWEALKGGGRFATVCPT  206 (266)
T ss_dssp             -CSEEEEEECCS----CGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             -cceeeeEecCC----CHHHHHHHHHhhcCCCCEEEEEeCc
Confidence             68999999887    4455667778888888875554443

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.9e-13  Score=109.41  Aligned_cols=109  Identities=19%  Similarity=0.161  Sum_probs=79.8

Q ss_pred             hcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhC-----------CCceEEEEeccccc
Q psy17460         44 NYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFE-----------ITNCDAILFEINEK  110 (216)
Q Consensus        44 ~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~-----------~~~v~~~~~d~~~~  110 (216)
                      .+...+|.+|||+|||+|.++..+++. ++ ++|+++|+++++++.|++|++..+           ..+++++.+|+  .
T Consensus        93 ~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di--~  170 (324)
T d2b25a1          93 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI--S  170 (324)
T ss_dssp             HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT--T
T ss_pred             HhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch--h
Confidence            335569999999999999999998876 55 799999999999999999987642           12799999999  6


Q ss_pred             ccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeC
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKT  158 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~  158 (216)
                      +.........||.||.|.|-.    ......+.+++++++.+.++.++
T Consensus       171 ~~~~~~~~~~fD~V~LD~p~P----~~~l~~~~~~LKpGG~lv~~~P~  214 (324)
T d2b25a1         171 GATEDIKSLTFDAVALDMLNP----HVTLPVFYPHLKHGGVCAVYVVN  214 (324)
T ss_dssp             CCC-------EEEEEECSSST----TTTHHHHGGGEEEEEEEEEEESS
T ss_pred             hcccccCCCCcceEeecCcCH----HHHHHHHHHhccCCCEEEEEeCC
Confidence            655433336899999998743    33455666777777765544443

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.43  E-value=2.1e-12  Score=98.46  Aligned_cols=104  Identities=13%  Similarity=0.086  Sum_probs=80.6

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      .+..|||+|||+|..+..+|+..+ ..++|+|+++.++..|...+...+++|+.++.+|+  .++.......++|.|+++
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da--~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG--SDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS--SCGGGTSCTTCCSEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCH--HHHhhhccCCceehhccc
Confidence            345899999999999999998865 89999999999999999999999998999999999  565433334789999998


Q ss_pred             CCCCCC------CCCCCHH---HHHHHhhcCCceEE
Q psy17460        128 PPFGTR------NCGIDLA---FVQYAADISKVVYS  154 (216)
Q Consensus       128 pp~~~~------~~~~~~~---~~~~~l~~~~~ly~  154 (216)
                      -|-.+.      ++-....   .+.+.+++++.++.
T Consensus       109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence            776654      2223333   34455666665544

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=8.4e-13  Score=100.62  Aligned_cols=69  Identities=12%  Similarity=0.102  Sum_probs=57.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++.+|||+|||+|.++..+.     +++|+|+|+.+++.++.+       +++++++|+  .+++...  ++||+|+|.-
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------~~~~~~~d~--~~l~~~~--~~fD~I~~~~   99 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------GVFVLKGTA--ENLPLKD--ESFDFALMVT   99 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------TCEEEECBT--TBCCSCT--TCEEEEEEES
T ss_pred             CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------ccccccccc--ccccccc--cccccccccc
Confidence            45589999999999877653     468999999999998874       689999999  6666543  7999999988


Q ss_pred             CCCCC
Q psy17460        129 PFGTR  133 (216)
Q Consensus       129 p~~~~  133 (216)
                      .+++.
T Consensus       100 ~l~h~  104 (208)
T d1vlma_         100 TICFV  104 (208)
T ss_dssp             CGGGS
T ss_pred             ccccc
Confidence            77765

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=2.6e-12  Score=103.08  Aligned_cols=125  Identities=16%  Similarity=0.160  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC----ceEEEEecc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT----NCDAILFEI  107 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~----~v~~~~~d~  107 (216)
                      ...+.+...+..    .++++|||+|||+|..+..+++.|. +|+|+|+|++|++.|+++....+..    ...+...|+
T Consensus        43 ~~~~~l~~~l~~----~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~  117 (292)
T d1xvaa_          43 EYKAWLLGLLRQ----HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW  117 (292)
T ss_dssp             HHHHHHHHHHHH----TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred             HHHHHHHHHhhh----cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccc
Confidence            344445554444    3678999999999999999999986 8999999999999999998776653    345556666


Q ss_pred             cccccccc-cccCcccEEEEc-CCCCCC-CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        108 NEKSLDSS-VFKQKVDTVIMN-PPFGTR-NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       108 ~~~~~~~~-~~~~~~D~vi~n-pp~~~~-~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                        ...... ...++||+|+|- ..+.+. +...                   ...+...+++.+.++|+| +|.++++.
T Consensus       118 --~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~~~Lkp-gG~li~~~  174 (292)
T d1xvaa_         118 --LTLDKDVPAGDGFDAVICLGNSFAHLPDSKG-------------------DQSEHRLALKNIASMVRP-GGLLVIDH  174 (292)
T ss_dssp             --GGHHHHSCCTTCEEEEEECSSCGGGSCCTTS-------------------SSHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred             --cccccccCCCCCceEEEEecCchhhcCCccc-------------------ChHHHHHHHHHHHHHcCc-CcEEEEee
Confidence              332211 112689999973 233322 1000                   011234567777888888 88888754

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.39  E-value=1.3e-12  Score=101.49  Aligned_cols=145  Identities=16%  Similarity=0.121  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEK  110 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  110 (216)
                      .+++.++..+. .++..+|.+|||+|||+|..+..++..++ +.|+|+|+|+.+++.++.++....  ++.++.+|+  .
T Consensus        58 klaA~i~~gl~-~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~--ni~~i~~d~--~  132 (230)
T d1g8sa_          58 KLAAAIIKGLK-VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE--NIIPILGDA--N  132 (230)
T ss_dssp             HHHHHHHTTCC-CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT--TEEEEECCT--T
T ss_pred             HHHHHHHhhHH-hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc--ccceEEEee--c
Confidence            34444433322 33567899999999999999999998765 799999999999999999876644  788999999  4


Q ss_pred             ccccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEEEee------CcchHHHHHHHHHhcCccceeeeeee
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVVYSLHK------TSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~~~~------~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      ...... ...+|++++...++.. ............+++++.++....      .......++...+.|.. .|+-+.+.
T Consensus       133 ~~~~~~-~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~-aGF~ive~  210 (230)
T d1g8sa_         133 KPQEYA-NIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEA-GGFKIVDE  210 (230)
T ss_dssp             CGGGGT-TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHH-HTEEEEEE
T ss_pred             cCcccc-cccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHH-cCCEEEEE
Confidence            443221 1345554433233322 111123333445555554332211      12345555555555555 56555543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.39  E-value=1.9e-12  Score=100.34  Aligned_cols=83  Identities=23%  Similarity=0.186  Sum_probs=66.6

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ...+|.+|||+|||+|..+..++.. |+ ++|+|+|+++.+++.++.+++..+  ++..+.+|+...... ......+|+
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~-~~~~~~vD~  146 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEY-RALVPKVDV  146 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGG-TTTCCCEEE
T ss_pred             ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccc-cccccceEE
Confidence            5678999999999999999999886 55 899999999999999999887655  788889998322222 122268999


Q ss_pred             EEEcCCCC
Q psy17460        124 VIMNPPFG  131 (216)
Q Consensus       124 vi~npp~~  131 (216)
                      |+++.+..
T Consensus       147 i~~d~~~~  154 (227)
T d1g8aa_         147 IFEDVAQP  154 (227)
T ss_dssp             EEECCCST
T ss_pred             EEEEcccc
Confidence            99988764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.5e-12  Score=104.09  Aligned_cols=116  Identities=12%  Similarity=0.037  Sum_probs=80.8

Q ss_pred             HHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHh-------CC--CceEEEEeccc
Q psy17460         39 HTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEF-------EI--TNCDAILFEIN  108 (216)
Q Consensus        39 ~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~-------~~--~~v~~~~~d~~  108 (216)
                      ..+...+...++++|||+|||+|.+++.++.. ++.+++|+|+++.+++.|+.+....       +.  .+++++++|+ 
T Consensus       141 ~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~-  219 (328)
T d1nw3a_         141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF-  219 (328)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT-
T ss_pred             HHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc-
Confidence            33344445568999999999999999988775 4578999999999999998876543       22  2799999999 


Q ss_pred             ccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        109 EKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       109 ~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                       .+.++.......|+|++|--.+..                          .....++...+.|+| +|+++...
T Consensus       220 -~~~~~~~~~~~advi~~~~~~f~~--------------------------~~~~~l~e~~r~LKp-Gg~iv~~~  266 (328)
T d1nw3a_         220 -LSEEWRERIANTSVIFVNNFAFGP--------------------------EVDHQLKERFANMKE-GGRIVSSK  266 (328)
T ss_dssp             -TSHHHHHHHHHCSEEEECCTTTCH--------------------------HHHHHHHHHHTTCCT-TCEEEESS
T ss_pred             -cccccccccCcceEEEEcceecch--------------------------HHHHHHHHHHHhCCC-CcEEEEec
Confidence             776654311235788886533211                          122344455667788 88887643

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.36  E-value=3.2e-12  Score=100.59  Aligned_cols=81  Identities=16%  Similarity=0.106  Sum_probs=67.4

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccE
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      +..+.++|||+|||+|..+..+++..+ .+++++|+ +++++.++.++...++. +++++.+|+  .+...    .+||+
T Consensus        77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~--~~~~~----~~~D~  149 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDF--FEPLP----RKADA  149 (253)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCT--TSCCS----SCEEE
T ss_pred             CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccc--hhhcc----cchhh
Confidence            334567999999999999999998865 78999998 67999999999888775 799999999  66432    57999


Q ss_pred             EEEcCCCCCC
Q psy17460        124 VIMNPPFGTR  133 (216)
Q Consensus       124 vi~npp~~~~  133 (216)
                      |++.-.+|+.
T Consensus       150 v~~~~vlh~~  159 (253)
T d1tw3a2         150 IILSFVLLNW  159 (253)
T ss_dssp             EEEESCGGGS
T ss_pred             eeeccccccC
Confidence            9998776644

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.33  E-value=4.4e-12  Score=98.69  Aligned_cols=96  Identities=17%  Similarity=0.275  Sum_probs=74.1

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      |-....+.+.++..+    ...++++|||+|||+|.++..++..+. +|+++|+|+++++.++.+.....  +++++.+|
T Consensus         3 FL~d~~i~~~iv~~~----~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~~--n~~i~~~D   75 (235)
T d1qama_           3 FITSKHNIDKIMTNI----RLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDHD--NFQVLNKD   75 (235)
T ss_dssp             BCCCHHHHHHHHTTC----CCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTCC--SEEEECCC
T ss_pred             CcCCHHHHHHHHHhc----CCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhccc--chhhhhhh
Confidence            334445555555444    345899999999999999999999864 99999999999999998775433  89999999


Q ss_pred             ccccccccccccCcccEEEEcCCCCCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +  .++....  .....|++|.||...
T Consensus        76 ~--l~~~~~~--~~~~~vv~NLPYnIs   98 (235)
T d1qama_          76 I--LQFKFPK--NQSYKIFGNIPYNIS   98 (235)
T ss_dssp             G--GGCCCCS--SCCCEEEEECCGGGH
T ss_pred             h--hhccccc--cccceeeeeehhhhh
Confidence            9  7665432  345678999999754

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=99.32  E-value=1.1e-13  Score=108.57  Aligned_cols=104  Identities=16%  Similarity=0.246  Sum_probs=82.6

Q ss_pred             CCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460         19 NPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI   97 (216)
Q Consensus        19 ~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~   97 (216)
                      +.+.++|| |-....+.+.++..+..    .+++.|||+|||+|.++..+++.+. +|++||+|+++++.++.+..... 
T Consensus         2 ~~~~k~GQnFL~d~~ii~kIv~~~~~----~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~~-   75 (245)
T d1yuba_           2 NKNIKYSQNFLTSEKVLNQIIKQLNL----KETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLNT-   75 (245)
T ss_dssp             CCCCCSCCCBCCCTTTHHHHHHHCCC----CSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTCS-
T ss_pred             CCCCCCCCcccCCHHHHHHHHHhcCC----CCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhcc-
Confidence            45677888 55566777777776643    4788999999999999999999865 99999999999888777665333 


Q ss_pred             CceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         98 TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        98 ~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                       +++++.+|+  .++....  ..++.|++|.||+..
T Consensus        76 -n~~ii~~D~--l~~~~~~--~~~~~vv~NLPY~Is  106 (245)
T d1yuba_          76 -RVTLIHQDI--LQFQFPN--KQRYKIVGNIPYHLS  106 (245)
T ss_dssp             -EEEECCSCC--TTTTCCC--SSEEEEEEECCSSSC
T ss_pred             -chhhhhhhh--hcccccc--ceeeeEeeeeehhhh
Confidence             899999999  6655432  577889999999865

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=8.2e-12  Score=96.41  Aligned_cols=139  Identities=16%  Similarity=0.098  Sum_probs=96.4

Q ss_pred             CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc----C---CCEEEEEeCChHHHHHHHHhhhHh-
Q psy17460         24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL----G---ADFCFALECDKEILDIFIDNKNEF-   95 (216)
Q Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~----~---~~~v~~iD~~~~~~~~~~~~~~~~-   95 (216)
                      .+++.+.+++...+++.+..  ...++++|||+|||||..+..+++.    |   ..+|+++|+++++++.+++|+... 
T Consensus        57 ~~~~is~P~~~a~~l~~L~~--~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~  134 (223)
T d1r18a_          57 GGVTISAPHMHAFALEYLRD--HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD  134 (223)
T ss_dssp             TTEEECCHHHHHHHHHHTTT--TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCceeehhhhHHHHHHHHhh--ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcc
Confidence            34566666777777776642  2247899999999999998777764    2   148999999999999999986543 


Q ss_pred             ----CCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460         96 ----EITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus        96 ----~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~  171 (216)
                          +..|+.++.+|.  .+.....  .+||.|+++......                           ++.    ..+.
T Consensus       135 ~~~~~~~nv~~~~~d~--~~~~~~~--~~fD~Iiv~~a~~~~---------------------------p~~----l~~~  179 (223)
T d1r18a_         135 RSMLDSGQLLIVEGDG--RKGYPPN--APYNAIHVGAAAPDT---------------------------PTE----LINQ  179 (223)
T ss_dssp             HHHHHHTSEEEEESCG--GGCCGGG--CSEEEEEECSCBSSC---------------------------CHH----HHHT
T ss_pred             hhhcCccEEEEEeccc--ccccccc--cceeeEEEEeechhc---------------------------hHH----HHHh
Confidence                344899999999  6654433  799999997754321                           111    3567


Q ss_pred             cCccceeeeeeeecCC-Cccc-cccccccce
Q psy17460        172 KNVEQVDVIAEMKYDL-NQSY-KFHKKSLHD  200 (216)
Q Consensus       172 l~~~~g~~~~~~~~~~-~~~~-~~~~~~~~~  200 (216)
                      |++ +|++++-.+... .+.+ .+.+.....
T Consensus       180 Lk~-gG~lV~pvg~~~~~q~l~~i~k~~~g~  209 (223)
T d1r18a_         180 LAS-GGRLIVPVGPDGGSQYMQQYDKDANGK  209 (223)
T ss_dssp             EEE-EEEEEEEESCSSSCEEEEEEEECTTSC
T ss_pred             cCC-CcEEEEEEecCCCcEEEEEEEEeCCCc
Confidence            799 999998666433 2233 555554443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=99.30  E-value=2.8e-12  Score=98.47  Aligned_cols=88  Identities=24%  Similarity=0.378  Sum_probs=69.0

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEe
Q psy17460         28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILF  105 (216)
Q Consensus        28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~  105 (216)
                      .||..+.+.|+..+..    .++.+|||+|||+|.+...+... . ...++|+|+++.++..+         .+..++.+
T Consensus         2 ~TP~~i~~~m~~l~~~----~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~   68 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEA----PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILA   68 (223)
T ss_dssp             CCCHHHHHHHHHHCCC----CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEES
T ss_pred             CCCHHHHHHHHHhcCC----CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeee
Confidence            5899999999987754    47889999999999998877654 3 36899999998543321         14678889


Q ss_pred             cccccccccccccCcccEEEEcCCCCCC
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      |.  ......   ..||+|++||||...
T Consensus        69 ~~--~~~~~~---~~fd~ii~npP~~~~   91 (223)
T d2ih2a1          69 DF--LLWEPG---EAFDLILGNPPYGIV   91 (223)
T ss_dssp             CG--GGCCCS---SCEEEEEECCCCCCB
T ss_pred             eh--hccccc---cccceecccCccccc
Confidence            98  666544   689999999999864

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=8.1e-12  Score=107.99  Aligned_cols=158  Identities=18%  Similarity=0.130  Sum_probs=98.0

Q ss_pred             CcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc----CC---------------CEEEEEeC
Q psy17460         20 PKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL----GA---------------DFCFALEC   80 (216)
Q Consensus        20 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~----~~---------------~~v~~iD~   80 (216)
                      .+...|+|.||.++...|+..+..    .++.+|+|++||+|.+.+.+.++    ..               ..++|+|+
T Consensus       139 ~~~~~GqfyTP~~Iv~~mv~ll~~----~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~  214 (524)
T d2ar0a1         139 TKSGAGQYFTPRPLIKTIIHLLKP----QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL  214 (524)
T ss_dssp             ------CCCCCHHHHHHHHHHHCC----CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEES
T ss_pred             hccccchhccccchhHhhhhcccC----ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhcc
Confidence            455679999999999999987754    36789999999999998876653    11               15899999


Q ss_pred             ChHHHHHHHHhhhHhCCC-----ceEEEEecccccccccccccCcccEEEEcCCCCCCCC------------CCCHHHHH
Q psy17460         81 DKEILDIFIDNKNEFEIT-----NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNC------------GIDLAFVQ  143 (216)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~------------~~~~~~~~  143 (216)
                      ++.+...|+.|+-..+..     .-.+..++.  ...... ...+||+|++||||+....            ..+.-|+.
T Consensus       215 ~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~--l~~d~~-~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~  291 (524)
T d2ar0a1         215 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNT--LGSDGE-NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQ  291 (524)
T ss_dssp             CHHHHHHHHHHHHTTTCCCBGGGTBSEEESCT--TSHHHH-TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhcccccccccchhhhhhh--hhhccc-ccccceeEEecCCccccccccchhhhccccccccHHHHH
Confidence            999999999998776653     123455555  332111 1268999999999986511            11344677


Q ss_pred             HHhhcCC---ceEEEeeCcch--HHHHHHHHHhcCccceeeeeeeec
Q psy17460        144 YAADISK---VVYSLHKTSTR--ESILKKIQAFKNVEQVDVIAEMKY  185 (216)
Q Consensus       144 ~~l~~~~---~ly~~~~~~~~--~~~~~~~~~~l~~~~g~~~~~~~~  185 (216)
                      .++..++   .+-.+.+.+..  ...-+..+++|-. ++.+..-..+
T Consensus       292 ~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~-~~~i~aII~L  337 (524)
T d2ar0a1         292 HIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD-KCHLHTILRL  337 (524)
T ss_dssp             HHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHH-HEEEEEEEEC
T ss_pred             HHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHH-cCCceEEEEC
Confidence            6665543   34444443321  1112234555544 4444444444

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.20  E-value=1.1e-10  Score=91.92  Aligned_cols=79  Identities=13%  Similarity=-0.012  Sum_probs=66.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ....+|||+|||+|.++..+++..+ .+++++|+ +++++.++.++...+.. ++.++.+|+  .+...    ..+|+|+
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~--~~~~p----~~~D~v~  152 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF--FKPLP----VTADVVL  152 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT--TSCCS----CCEEEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeec--ccccc----ccchhhh
Confidence            4557999999999999999999866 69999998 88999999999888775 699999999  66332    5799999


Q ss_pred             EcCCCCCC
Q psy17460        126 MNPPFGTR  133 (216)
Q Consensus       126 ~npp~~~~  133 (216)
                      +.--+|..
T Consensus       153 ~~~vLh~~  160 (256)
T d1qzza2         153 LSFVLLNW  160 (256)
T ss_dssp             EESCGGGS
T ss_pred             cccccccc
Confidence            98877755

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=6.3e-11  Score=98.66  Aligned_cols=151  Identities=19%  Similarity=0.268  Sum_probs=91.2

Q ss_pred             HHHHHHHHHhhcccCCCcc-cCccccCCH-----HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEE
Q psy17460          4 KHIEQYLQQLTFNFSNPKV-HLEQYHTPP-----HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCF   76 (216)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~~~~~t~~-----~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~   76 (216)
                      ..++.-+++++...-.|+. .+.+|....     ++.-.++..+...+...+|++|||+|||+|.+++.++.. +.++|+
T Consensus       165 ~~~~~i~~~~y~r~v~p~~~~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~  244 (406)
T d1u2za_         165 SFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSF  244 (406)
T ss_dssp             HHHHHHHHHHHHHHTGGGGGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEE
T ss_pred             HHHHHHHHHhhcccccCChHHhcccCCCCCCccccCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEE
Confidence            3445556666566655543 455654221     112222333334445678999999999999999988765 556999


Q ss_pred             EEeCChHHHHHHHHhhhHhC-------CC--ceEE-EEeccccccccc-ccccCcccEEEEcCCCCCCCCCCCHHHHHHH
Q psy17460         77 ALECDKEILDIFIDNKNEFE-------IT--NCDA-ILFEINEKSLDS-SVFKQKVDTVIMNPPFGTRNCGIDLAFVQYA  145 (216)
Q Consensus        77 ~iD~~~~~~~~~~~~~~~~~-------~~--~v~~-~~~d~~~~~~~~-~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~  145 (216)
                      |+|+++.+++.|+.+....+       ..  .+.+ ..+++  .+.+. ...-..+|+|++|--.+ .            
T Consensus       245 GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f--~~~~~~d~~~~~adVV~inn~~f-~------------  309 (406)
T d1u2za_         245 GCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF--VDNNRVAELIPQCDVILVNNFLF-D------------  309 (406)
T ss_dssp             EEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS--TTCHHHHHHGGGCSEEEECCTTC-C------------
T ss_pred             EEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeech--hhccccccccccceEEEEecccC-c------------
Confidence            99999999999999886542       11  2332 34444  33221 11114578888764211 1            


Q ss_pred             hhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        146 ADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       146 l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                                   ......+....+.|+| ||+++...
T Consensus       310 -------------~~l~~~L~ei~r~LKP-GGrIVs~~  333 (406)
T d1u2za_         310 -------------EDLNKKVEKILQTAKV-GCKIISLK  333 (406)
T ss_dssp             -------------HHHHHHHHHHHTTCCT-TCEEEESS
T ss_pred             -------------hHHHHHHHHHHHhcCC-CcEEEEec
Confidence                         1233445556778888 88877643

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.17  E-value=5.3e-11  Score=89.65  Aligned_cols=84  Identities=21%  Similarity=0.230  Sum_probs=68.1

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc---ccccCcc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS---SVFKQKV  121 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~~~  121 (216)
                      ...++..++|++||+|..+..+++..+ ++|+|+|.|+++++.++.++..++. ++.++++++  .++..   ....++|
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~-r~~~~~~~f--~~~~~~~~~~~~~~v   96 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSD-RVSLFKVSY--READFLLKTLGIEKV   96 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTT-TEEEEECCG--GGHHHHHHHTTCSCE
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccc-cccchhHHH--hhHHHHHHHcCCCCc
Confidence            345888999999999999998888644 7999999999999999999988765 799999999  54321   1122789


Q ss_pred             cEEEEcCCCCC
Q psy17460        122 DTVIMNPPFGT  132 (216)
Q Consensus       122 D~vi~npp~~~  132 (216)
                      |.|+.|..+..
T Consensus        97 dgIl~DlGvSs  107 (192)
T d1m6ya2          97 DGILMDLGVST  107 (192)
T ss_dssp             EEEEEECSCCH
T ss_pred             ceeeeccchhH
Confidence            99999876643

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8.6e-11  Score=93.25  Aligned_cols=96  Identities=17%  Similarity=0.213  Sum_probs=77.0

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEe
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILF  105 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~  105 (216)
                      |-....+.+.++..+.    ..+++.|||+|+|+|.++..+++.++ +|+++|+|+.+++..+..+...... +++++.+
T Consensus         3 FL~d~~i~~kIv~~~~----~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~   77 (278)
T d1zq9a1           3 ILKNPLIINSIIDKAA----LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVG   77 (278)
T ss_dssp             EECCHHHHHHHHHHTC----CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEES
T ss_pred             CcCCHHHHHHHHHHhC----CCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHH
Confidence            4455566666666553    34788999999999999999999875 9999999999999999887665443 8999999


Q ss_pred             cccccccccccccCcccEEEEcCCCCCC
Q psy17460        106 EINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       106 d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      |+  .....    ..++.||+|.||...
T Consensus        78 D~--l~~~~----~~~~~vV~NLPY~Is   99 (278)
T d1zq9a1          78 DV--LKTDL----PFFDTCVANLPYQIS   99 (278)
T ss_dssp             CT--TTSCC----CCCSEEEEECCGGGH
T ss_pred             HH--hhhhh----hhhhhhhcchHHHHH
Confidence            99  77654    356789999999743

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4e-11  Score=93.82  Aligned_cols=50  Identities=12%  Similarity=0.069  Sum_probs=42.8

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE   96 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~   96 (216)
                      ..++.+|||+|||+|..+..++..+...|+|+|+|+.+++.|++++...+
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcc
Confidence            34678999999999999887777766689999999999999999876544

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.5e-10  Score=91.92  Aligned_cols=103  Identities=15%  Similarity=0.041  Sum_probs=64.8

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc------CC-CEEEEEeCChHHHHHHHHhhhHhC-CCc--eEEEEeccccccc--cccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL------GA-DFCFALECDKEILDIFIDNKNEFE-ITN--CDAILFEINEKSL--DSSV  116 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~------~~-~~v~~iD~~~~~~~~~~~~~~~~~-~~~--v~~~~~d~~~~~~--~~~~  116 (216)
                      ++.+|||+|||+|.++..++..      +. ..++|+|+|+.+++.+++++.... .++  +++...++++...  ....
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK  119 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence            3348999999999988766543      12 468999999999999999876543 223  3445555521110  1111


Q ss_pred             ccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460        117 FKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKV  151 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~  151 (216)
                      ..++||+|+|.-.+++. +.....+.+.+.+++++.
T Consensus       120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~  155 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAK  155 (280)
T ss_dssp             SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEE
T ss_pred             CCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCE
Confidence            23789999998887766 333333344444444444

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=9.7e-10  Score=84.28  Aligned_cols=80  Identities=18%  Similarity=0.071  Sum_probs=66.9

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc----cccCc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS----VFKQK  120 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~----~~~~~  120 (216)
                      .+.++|||+|||+|..++.++..-  .++++++|.+++..+.|+.++...++. +++++.||+  .+....    ...++
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda--~e~l~~~~~~~~~~~  135 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA--LETLDELLAAGEAGT  135 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH--HHHHHHHHHTTCTTC
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeeh--hhcchhhhhhcccCC
Confidence            378899999999999999988762  279999999999999999999999987 699999999  664321    12368


Q ss_pred             ccEEEEcCC
Q psy17460        121 VDTVIMNPP  129 (216)
Q Consensus       121 ~D~vi~npp  129 (216)
                      ||+||.|..
T Consensus       136 fD~ifiD~d  144 (219)
T d2avda1         136 FDVAVVDAD  144 (219)
T ss_dssp             EEEEEECSC
T ss_pred             ccEEEEeCC
Confidence            999999863

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=7.6e-11  Score=92.40  Aligned_cols=98  Identities=13%  Similarity=0.110  Sum_probs=75.3

Q ss_pred             ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460         27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE  106 (216)
Q Consensus        27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d  106 (216)
                      |-....+.+.+++.+..    .+++.|||+|||+|.++..+++.+ .+|+++|+|+.+++..+.......  +++++.+|
T Consensus         3 FL~d~~~~~~Iv~~~~~----~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~--~~~ii~~D   75 (252)
T d1qyra_           3 FLNDQFVIDSIVSAINP----QKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLGP--KLTIYQQD   75 (252)
T ss_dssp             EECCHHHHHHHHHHHCC----CTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTGG--GEEEECSC
T ss_pred             ccCCHHHHHHHHHhcCC----CCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhcc--chhHHhhh
Confidence            44566777777777743    478899999999999999999886 489999999999999887654433  89999999


Q ss_pred             ccccccccccc---cCcccEEEEcCCCCCC
Q psy17460        107 INEKSLDSSVF---KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       107 ~~~~~~~~~~~---~~~~D~vi~npp~~~~  133 (216)
                      +  ..+.....   ....-.|++|.||...
T Consensus        76 ~--l~~~~~~~~~~~~~~~~vvgNlPY~Is  103 (252)
T d1qyra_          76 A--MTFNFGELAEKMGQPLRVFGNLPYNIS  103 (252)
T ss_dssp             G--GGCCHHHHHHHHTSCEEEEEECCTTTH
T ss_pred             h--hhhcccccccccCCCeEEEecchHHHH
Confidence            9  66544310   1233478899999854

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=5.4e-10  Score=85.52  Aligned_cols=78  Identities=15%  Similarity=0.109  Sum_probs=65.7

Q ss_pred             CCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccc----ccCcc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSV----FKQKV  121 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~----~~~~~  121 (216)
                      ++++|||+|||+|..++.+++. .. ++|+++|+++++++.++.++...++. +++++.||+  .+.....    ..++|
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~--~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGAS--QDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH--HHHGGGHHHHSCCCCE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccc--cccccchhhccccccc
Confidence            6789999999999999998875 22 79999999999999999999999987 699999999  6653321    22579


Q ss_pred             cEEEEcC
Q psy17460        122 DTVIMNP  128 (216)
Q Consensus       122 D~vi~np  128 (216)
                      |+|+++.
T Consensus       134 D~ifiD~  140 (214)
T d2cl5a1         134 DMVFLDH  140 (214)
T ss_dssp             EEEEECS
T ss_pred             ceeeecc
Confidence            9999975

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.08  E-value=3.3e-09  Score=81.64  Aligned_cols=108  Identities=10%  Similarity=0.025  Sum_probs=82.7

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccc-----ccCc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSV-----FKQK  120 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~-----~~~~  120 (216)
                      +.++|||+|+++|..++.+++.-  .++++.+|.+++..+.|+.++...++. +++++.||+  .+.....     ..++
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a--~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA--LPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH--HHHHHHHHHCGGGTTC
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH--HHHHHHHHhccccCCc
Confidence            67899999999999999988752  279999999999999999999999987 699999999  6654321     1258


Q ss_pred             ccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCC
Q psy17460        121 VDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDL  187 (216)
Q Consensus       121 ~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  187 (216)
                      ||+||.|.-     +...                       ...++.+.++|++ +|.++++.-+..
T Consensus       137 fD~iFiDa~-----k~~y-----------------------~~~~e~~~~ll~~-gGiii~DNvl~~  174 (227)
T d1susa1         137 YDFIFVDAD-----KDNY-----------------------LNYHKRLIDLVKV-GGVIGYDNTLWN  174 (227)
T ss_dssp             BSEEEECSC-----STTH-----------------------HHHHHHHHHHBCT-TCCEEEETTTGG
T ss_pred             eeEEEeccc-----hhhh-----------------------HHHHHHHHhhcCC-CcEEEEccCCCC
Confidence            999999862     2111                       2344455667788 888887655433

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=3.7e-09  Score=80.18  Aligned_cols=102  Identities=18%  Similarity=0.291  Sum_probs=72.9

Q ss_pred             CCcccCccccCCHHHH-HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhC
Q psy17460         19 NPKVHLEQYHTPPHLA-ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFE   96 (216)
Q Consensus        19 ~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~   96 (216)
                      |.+.++....+.+++. .++++.+.. ++..++.+|+|+|+|.|.-++.++-..+ .+++.+|.+..-+...+......+
T Consensus        35 N~~~NLts~~~~~~~~~rHi~DSl~~-~~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~  113 (207)
T d1jsxa_          35 NKAYNLTSVRDPNEMLVRHILDSIVV-APYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK  113 (207)
T ss_dssp             C------------CHHHHHHHHHHHH-GGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCceeeEECCCHHHHHHHHhcchHhh-hhhhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcC
Confidence            4445555444555544 455555443 3555778999999999999999888766 799999999999999999999999


Q ss_pred             CCceEEEEecccccccccccccCcccEEEE
Q psy17460         97 ITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        97 ~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ++|++++++.+  .+....   .+||+|++
T Consensus       114 L~nv~v~~~R~--E~~~~~---~~fD~V~s  138 (207)
T d1jsxa_         114 LENIEPVQSRV--EEFPSE---PPFDGVIS  138 (207)
T ss_dssp             CSSEEEEECCT--TTSCCC---SCEEEEEC
T ss_pred             Ccceeeeccch--hhhccc---cccceehh
Confidence            98999999999  555433   58999987

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.99  E-value=1.7e-09  Score=85.82  Aligned_cols=94  Identities=14%  Similarity=0.086  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC----------CCceE
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE----------ITNCD  101 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~----------~~~v~  101 (216)
                      .+.+.|+...+..  ..++++||.+|+|.|..+.+++++...+|+++|+|+.+++.|++.+....          -++++
T Consensus        57 ~Yhe~l~~~~l~~--~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~  134 (276)
T d1mjfa_          57 SYHEPLVHPAMLA--HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAK  134 (276)
T ss_dssp             HHHHHHHHHHHHH--SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEE
T ss_pred             HHHHHhhcchhhc--CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCce
Confidence            4556665544332  24678999999999999999888766799999999999999998764321          23799


Q ss_pred             EEEecccccccccccccCcccEEEEcCCCC
Q psy17460        102 AILFEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       102 ~~~~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      ++.+|+  ..+....  ++||+|++|++-.
T Consensus       135 i~~~Da--~~~l~~~--~~yDvIi~D~~~~  160 (276)
T d1mjfa_         135 LTIGDG--FEFIKNN--RGFDVIIADSTDP  160 (276)
T ss_dssp             EEESCH--HHHHHHC--CCEEEEEEECCCC
T ss_pred             EEEChH--HHHHhcc--CCCCEEEEeCCCC
Confidence            999999  7776443  7899999998754

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.98  E-value=4.6e-09  Score=81.57  Aligned_cols=145  Identities=11%  Similarity=0.041  Sum_probs=94.9

Q ss_pred             CEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC---------CCceEEEEecccccccccccccCcc
Q psy17460         51 KTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE---------ITNCDAILFEINEKSLDSSVFKQKV  121 (216)
Q Consensus        51 ~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~---------~~~v~~~~~d~~~~~~~~~~~~~~~  121 (216)
                      .+|||+.||.|.-+..++..|+ +|+++|.++.+....+.++....         ..+++++.+|+  .++.... .+.|
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds--~~~L~~~-~~~~  165 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS--LTALTDI-TPRP  165 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH--HHHSTTC-SSCC
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH--HHHHhcc-CCCC
Confidence            4899999999999999999986 89999999998887777665432         12799999999  7765432 2679


Q ss_pred             cEEEEcCCCCCCCCCC-CHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCcc--c-cccccc
Q psy17460        122 DTVIMNPPFGTRNCGI-DLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQS--Y-KFHKKS  197 (216)
Q Consensus       122 D~vi~npp~~~~~~~~-~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~--~-~~~~~~  197 (216)
                      |+|+.||||....+.+ ..+.+.......+      ...+.+.+++.+.+. ..  -++|+.........  . ..+.-.
T Consensus       166 DvIYlDPMFp~~~Ksa~~kk~m~~l~~l~~------~d~d~~~ll~~a~~~-a~--~RVVVKRp~~a~~l~~~~p~~~i~  236 (250)
T d2oyra1         166 QVVYLDPMFPHKQKSALVKKEMRVFQSLVG------PDLDADGLLEPARLL-AT--KRVVVKRPDYAPPLANVATPNAVV  236 (250)
T ss_dssp             SEEEECCCCCCCCC-----HHHHHHHHHSC------CCTTGGGGHHHHHHH-CS--SEEEEEEETTCCCGGGCCCSEEEE
T ss_pred             CEEEECCCCccccccccchhHHHHHHhhcc------CCCCHHHHHHHHHhh-CC--CEEEEeCcCCCccccCCCCCeEEe
Confidence            9999999998774332 2233222222222      223556778888877 22  36666554332221  1 223445


Q ss_pred             cceEEEEEEEE
Q psy17460        198 LHDIEVDLLRI  208 (216)
Q Consensus       198 ~~~~~~~~~r~  208 (216)
                      .+.++.+++..
T Consensus       237 gKs~RfDVY~~  247 (250)
T d2oyra1         237 TKGHRFDIYAG  247 (250)
T ss_dssp             CSSEEEEEEEC
T ss_pred             cCcEEEEEecC
Confidence            55677777753

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.3e-09  Score=84.38  Aligned_cols=116  Identities=9%  Similarity=0.011  Sum_probs=73.4

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC---------------------------
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT---------------------------   98 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~---------------------------   98 (216)
                      ...+|.+|||+|||+|..++..+..+..+|+|+|+++.+++.+++.+......                           
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            44578899999999998876555444559999999999999999876543210                           


Q ss_pred             ---ceEEEEeccccccccc--ccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcC
Q psy17460         99 ---NCDAILFEINEKSLDS--SVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKN  173 (216)
Q Consensus        99 ---~v~~~~~d~~~~~~~~--~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~  173 (216)
                         ...+..+|+.+.....  ....++||+|++.-..++...                     ...+....++.+.++|+
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~---------------------~~~~~~~~l~~~~~~Lk  189 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP---------------------DLASFQRALDHITTLLR  189 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCS---------------------SHHHHHHHHHHHHTTEE
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHcc---------------------CHHHHHHHHHHHHHHcC
Confidence               1235566662222111  112257999998543321100                     00123456667788889


Q ss_pred             ccceeeeeee
Q psy17460        174 VEQVDVIAEM  183 (216)
Q Consensus       174 ~~~g~~~~~~  183 (216)
                      | +|.++...
T Consensus       190 P-GG~li~~~  198 (263)
T d2g72a1         190 P-GGHLLLIG  198 (263)
T ss_dssp             E-EEEEEEEE
T ss_pred             C-CCEEEEec
Confidence            9 88887743

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=98.96  E-value=1.3e-09  Score=84.72  Aligned_cols=106  Identities=20%  Similarity=0.149  Sum_probs=79.7

Q ss_pred             cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC---------------------------------
Q psy17460         26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA---------------------------------   72 (216)
Q Consensus        26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~---------------------------------   72 (216)
                      .-+.+..+.+.++..+........+..++|+.||+|++.++++....                                 
T Consensus        27 ~~~~~~~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~  106 (249)
T d1o9ga_          27 YPAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTA  106 (249)
T ss_dssp             BCCCCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHH
T ss_pred             CCCcchHHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHH
Confidence            33445678888888777665666667899999999999998775311                                 


Q ss_pred             --------CEEEEEeCChHHHHHHH---HhhhHhCCC-ceEEEEecccccccccc---cccCcccEEEEcCCCCCC
Q psy17460         73 --------DFCFALECDKEILDIFI---DNKNEFEIT-NCDAILFEINEKSLDSS---VFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        73 --------~~v~~iD~~~~~~~~~~---~~~~~~~~~-~v~~~~~d~~~~~~~~~---~~~~~~D~vi~npp~~~~  133 (216)
                              ..++|.|+++.+++.|+   .|+...++. .+++...|+  ++....   ......++|||||||+.+
T Consensus       107 ~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~--f~~~~~~~~~~~~~~GlIVtNPPYGER  180 (249)
T d1o9ga_         107 RELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADV--FDPRALSAVLAGSAPDVVLTDLPYGER  180 (249)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCT--TCGGGHHHHHTTCCCSEEEEECCGGGS
T ss_pred             HhccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecch--hccCcchhccCCCCCCEEEeCCCcccc
Confidence                    14678999999999884   588888886 589999998  654321   112568999999999988

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.91  E-value=2.4e-09  Score=86.23  Aligned_cols=92  Identities=15%  Similarity=0.207  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHh--C---CCceEEEEec
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEF--E---ITNCDAILFE  106 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~--~---~~~v~~~~~d  106 (216)
                      +.+.++......  +..+++||.+|.|.|..+.++++..+ .+|+++|+++.+++.|++.+...  +   -++++++.+|
T Consensus        63 Yhe~l~h~~l~~--~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~D  140 (312)
T d1uira_          63 YHETLVHPAMLT--HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD  140 (312)
T ss_dssp             HHHHHHHHHHHH--SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESC
T ss_pred             HHHHHhhhhhhh--CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEch
Confidence            345555543322  24678999999999999999888754 79999999999999999987432  1   2279999999


Q ss_pred             ccccccccccccCcccEEEEcCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      +  .++... ..++||+|++|++
T Consensus       141 a--~~~l~~-~~~~yDvIi~D~~  160 (312)
T d1uira_         141 A--RAYLER-TEERYDVVIIDLT  160 (312)
T ss_dssp             H--HHHHHH-CCCCEEEEEEECC
T ss_pred             H--HHHhhh-cCCcccEEEEeCC
Confidence            9  877543 2368999998864

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.90  E-value=1.1e-08  Score=82.30  Aligned_cols=94  Identities=14%  Similarity=0.112  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEK  110 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  110 (216)
                      .+..+...+.   ...+|.+|||++||.|.-+..++..  ..+.+++.|+++.-+..++.+++..++.++.+...|.  .
T Consensus       103 ~aS~l~~~~l---~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~--~  177 (313)
T d1ixka_         103 ASSMYPPVAL---DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS--L  177 (313)
T ss_dssp             HHHHHHHHHH---CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG--G
T ss_pred             ccccchhhcc---cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccc--c
Confidence            4444444443   3468999999999999988877764  2368999999999999999999999988888888888  6


Q ss_pred             ccccccccCcccEEEEcCCCCCC
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      ......  ..||.|++|+|....
T Consensus       178 ~~~~~~--~~fD~ILvDaPCSg~  198 (313)
T d1ixka_         178 HIGELN--VEFDKILLDAPCTGS  198 (313)
T ss_dssp             GGGGGC--CCEEEEEEECCTTST
T ss_pred             cccccc--ccccEEEEccccccC
Confidence            654432  689999999998765

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=2.5e-09  Score=85.16  Aligned_cols=96  Identities=17%  Similarity=0.130  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccc
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEK  110 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  110 (216)
                      .....++..+..   ..+|.+|||++||.|.-+..++..+. ..|+++|+++.-+...+.+++..+++++.....|.  .
T Consensus        88 D~sS~l~~~~L~---~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~--~  162 (284)
T d1sqga2          88 DASAQGCMTWLA---PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGR--Y  162 (284)
T ss_dssp             CHHHHTHHHHHC---CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTT--C
T ss_pred             cccccccccccC---ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeecccc--c
Confidence            455555555543   36889999999999999988887654 78999999999999999999999986666666655  3


Q ss_pred             ccccccccCcccEEEEcCCCCCC
Q psy17460        111 SLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       111 ~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      ..... ....||.|++|+|....
T Consensus       163 ~~~~~-~~~~fd~IL~DaPCSg~  184 (284)
T d1sqga2         163 PSQWC-GEQQFDRILLDAPCSAT  184 (284)
T ss_dssp             THHHH-TTCCEEEEEEECCCCCG
T ss_pred             cchhc-ccccccEEEEecccccc
Confidence            22211 12689999999999775

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=1.3e-08  Score=81.13  Aligned_cols=93  Identities=14%  Similarity=0.126  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhC----CCceEEEEecc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFE----ITNCDAILFEI  107 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~----~~~v~~~~~d~  107 (216)
                      +.+.++...+..  +..+++||-+|.|.|..+.+++++.+ .+|+++|+|+.+++.|++.+....    -++++++.+|+
T Consensus        75 YhE~l~h~pl~~--~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da  152 (295)
T d1inla_          75 YHEMLAHVPMFL--HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG  152 (295)
T ss_dssp             HHHHHHHHHHHH--SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred             hhhhhcchhHhh--CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhH
Confidence            455555544432  23578999999999999999998765 789999999999999999775432    23799999999


Q ss_pred             cccccccccccCcccEEEEcCCC
Q psy17460        108 NEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus       108 ~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                        .++... ..++||+|++|++-
T Consensus       153 --~~~l~~-~~~~yDvIi~D~~d  172 (295)
T d1inla_         153 --AEYVRK-FKNEFDVIIIDSTD  172 (295)
T ss_dssp             --HHHGGG-CSSCEEEEEEEC--
T ss_pred             --HHHHhc-CCCCCCEEEEcCCC
Confidence              887654 23689999998754

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.8e-08  Score=79.23  Aligned_cols=85  Identities=16%  Similarity=0.180  Sum_probs=70.5

Q ss_pred             CCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc-ccCcccE
Q psy17460         47 DIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV-FKQKVDT  123 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~~D~  123 (216)
                      ..+|.+|||++||.|.-+..++.. + ...|+++|+++.-++.++.+++..++.++.+...|+  ..+.... ..+.||.
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~--~~~~~~~~~~~~fD~  169 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDF--LAVSPSDPRYHEVHY  169 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG--GGSCTTCGGGTTEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhh--hhhcccccccceeeE
Confidence            357999999999999988877654 3 479999999999999999999999998999999999  6654322 2267999


Q ss_pred             EEEcCCCCCC
Q psy17460        124 VIMNPPFGTR  133 (216)
Q Consensus       124 vi~npp~~~~  133 (216)
                      |++|||....
T Consensus       170 VL~DaPCSg~  179 (293)
T d2b9ea1         170 ILLDPSCSGS  179 (293)
T ss_dssp             EEECCCCCC-
T ss_pred             EeecCcccch
Confidence            9999997663

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.81  E-value=1.1e-08  Score=81.95  Aligned_cols=94  Identities=16%  Similarity=0.101  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhC----CCceEEEEec
Q psy17460         32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFE----ITNCDAILFE  106 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~----~~~v~~~~~d  106 (216)
                      .+.+.|+...+..  +..+++||-+|.|.|..+.+++++.+ .+|+.+|+|+++++.|++.+..+.    -++++++.+|
T Consensus        91 ~YhE~l~h~pl~~--~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~D  168 (312)
T d2b2ca1          91 SYQEMLAHLPMFA--HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD  168 (312)
T ss_dssp             HHHHHHHHHHHHH--SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSC
T ss_pred             HHHHHhhhHHHhc--CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEch
Confidence            3566666544432  23678999999999999999999865 799999999999999999875422    2379999999


Q ss_pred             ccccccccccccCcccEEEEcCCC
Q psy17460        107 INEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                      +  .++... ..++||+|++|++-
T Consensus       169 a--~~~l~~-~~~~yDvII~D~~d  189 (312)
T d2b2ca1         169 G--FEFLKN-HKNEFDVIITDSSD  189 (312)
T ss_dssp             H--HHHHHH-CTTCEEEEEECCC-
T ss_pred             H--HHHHHh-CCCCCCEEEEcCCC
Confidence            9  877643 33789999998763

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.81  E-value=1.9e-08  Score=80.02  Aligned_cols=94  Identities=16%  Similarity=0.080  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhC----CCceEEEEecc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFE----ITNCDAILFEI  107 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~----~~~v~~~~~d~  107 (216)
                      +.+.++.....  .+...++||-+|.|.|..+.+++++.+ .+++++|+|+++++.|++.+....    -++++++.+|+
T Consensus        66 Yhe~l~h~~~~--~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da  143 (290)
T d1xj5a_          66 YQEMITHLPLC--SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG  143 (290)
T ss_dssp             HHHHHHHHHHT--TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH
T ss_pred             HHHHHhhHHHh--hCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccH
Confidence            44555554443  234678999999999999999999855 799999999999999999764321    23799999999


Q ss_pred             cccccccccccCcccEEEEcCCC
Q psy17460        108 NEKSLDSSVFKQKVDTVIMNPPF  130 (216)
Q Consensus       108 ~~~~~~~~~~~~~~D~vi~npp~  130 (216)
                        .+.......++||+|++|.+-
T Consensus       144 --~~~l~~~~~~~yDvIi~D~~d  164 (290)
T d1xj5a_         144 --VAFLKNAAEGSYDAVIVDSSD  164 (290)
T ss_dssp             --HHHHHTSCTTCEEEEEECCCC
T ss_pred             --HHHHhhccccCccEEEEcCCC
Confidence              777644333689999998763

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.80  E-value=1.4e-08  Score=80.21  Aligned_cols=94  Identities=10%  Similarity=0.035  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHh-C---CCceEEEEecc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEF-E---ITNCDAILFEI  107 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~-~---~~~v~~~~~d~  107 (216)
                      +.+.++...+..  ...+++||-+|.|.|..+.+++++.. .+|+.+|+|+.+++.|++.+..+ +   -++++++.+|+
T Consensus        61 Yhe~l~h~~l~~--~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~  138 (274)
T d1iy9a_          61 YHEMVAHVPLFT--HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG  138 (274)
T ss_dssp             HHHHHHHHHHHH--SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS
T ss_pred             chhhhccchhhc--cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechH
Confidence            445555444432  23678999999999999999998754 79999999999999999987542 1   22799999999


Q ss_pred             cccccccccccCcccEEEEcCCCC
Q psy17460        108 NEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus       108 ~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                        ..+.... .++||+|+.|++-.
T Consensus       139 --~~~l~~~-~~~yDvIi~D~~~p  159 (274)
T d1iy9a_         139 --FMHIAKS-ENQYDVIMVDSTEP  159 (274)
T ss_dssp             --HHHHHTC-CSCEEEEEESCSSC
T ss_pred             --HHHHhhc-CCCCCEEEEcCCCC
Confidence              7776442 36899999997643

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.1e-08  Score=78.58  Aligned_cols=92  Identities=11%  Similarity=0.082  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHh----CCCceEEEEecc
Q psy17460         33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEF----EITNCDAILFEI  107 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~----~~~~v~~~~~d~  107 (216)
                      +.+.++.....  ....+++||-+|.|.|..+.++.++.. .+|+.+|+|+.+++.|++.+..+    .-++++++.+|+
T Consensus        64 Yhe~l~h~~l~--~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da  141 (285)
T d2o07a1          64 YQEMIANLPLC--SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG  141 (285)
T ss_dssp             HHHHHHHHHHT--TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred             HHHHhccHhhh--hCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccH
Confidence            34444443332  334678999999999999999998754 79999999999999999987532    123899999999


Q ss_pred             cccccccccccCcccEEEEcCC
Q psy17460        108 NEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus       108 ~~~~~~~~~~~~~~D~vi~npp  129 (216)
                        .++... ..++||+|++|++
T Consensus       142 --~~~l~~-~~~~yDvIi~D~~  160 (285)
T d2o07a1         142 --FEFMKQ-NQDAFDVIITDSS  160 (285)
T ss_dssp             --HHHHHT-CSSCEEEEEEECC
T ss_pred             --HHHHhc-CCCCCCEEEEcCC
Confidence              777643 2368999999975

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.71  E-value=7.5e-08  Score=79.13  Aligned_cols=94  Identities=17%  Similarity=0.138  Sum_probs=74.0

Q ss_pred             CCCEEEEecCCCCHhHHHHhH-cCCCEEEEEeCChHHHHHHHHhhhHhCCC---------------ceEEEEeccccccc
Q psy17460         49 DGKTVLDLGCGSGILTFGSIL-LGADFCFALECDKEILDIFIDNKNEFEIT---------------NCDAILFEINEKSL  112 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~~~~~~~~---------------~v~~~~~d~~~~~~  112 (216)
                      ++.+|||..||||..++..+. .+..+|++.|+|+++++.+++|++.|+..               .+.+...|+  ..+
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da--~~~  122 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA--NRL  122 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH--HHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhh--hhh
Confidence            678999999999999986555 55679999999999999999999998753               256777777  554


Q ss_pred             ccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460        113 DSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV  151 (216)
Q Consensus       113 ~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~  151 (216)
                      .... .+.||+|.+|| |+.     ...|++.++...+.
T Consensus       123 ~~~~-~~~fDvIDiDP-fGs-----~~pfldsAi~a~~~  154 (375)
T d2dula1         123 MAER-HRYFHFIDLDP-FGS-----PMEFLDTALRSAKR  154 (375)
T ss_dssp             HHHS-TTCEEEEEECC-SSC-----CHHHHHHHHHHEEE
T ss_pred             hHhh-cCcCCcccCCC-CCC-----cHHHHHHHHHHhcc
Confidence            4322 26799999997 664     34689989888665

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.69  E-value=2.1e-07  Score=71.66  Aligned_cols=106  Identities=11%  Similarity=0.107  Sum_probs=77.5

Q ss_pred             CCcccCccccCCHHHHH-HHHHHHHhhcCCC---CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhh
Q psy17460         19 NPKVHLEQYHTPPHLAA-TILHTIQNNYNDI---DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKN   93 (216)
Q Consensus        19 ~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~---~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~   93 (216)
                      |.+.++....+.+.+.. ++++.+. .+...   .+.+++|+|+|.|.-++.++-..+ .+++.+|.+..-+...+....
T Consensus        37 N~~~NLts~~~~~~i~~rHi~DSl~-~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~  115 (239)
T d1xdza_          37 NEKINLTSITEKKEVYLKHFYDSIT-AAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSE  115 (239)
T ss_dssp             HHHSCCCSCCSHHHHHHHTHHHHHG-GGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCceEEEecCCHHHHHHHhccchhh-hhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHH
Confidence            44555555666666654 4445443 22322   467999999999999999887544 799999999999999999999


Q ss_pred             HhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460         94 EFEITNCDAILFEINEKSLDSSVFKQKVDTVIM  126 (216)
Q Consensus        94 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~  126 (216)
                      ..+++++.++.+.+++..... ...++||+|++
T Consensus       116 ~L~L~n~~i~~~R~E~~~~~~-~~~~~~D~v~s  147 (239)
T d1xdza_         116 ALQLENTTFCHDRAETFGQRK-DVRESYDIVTA  147 (239)
T ss_dssp             HHTCSSEEEEESCHHHHTTCT-TTTTCEEEEEE
T ss_pred             HhCCCCcEEEeehhhhccccc-cccccceEEEE
Confidence            999989999999994332211 12268999997

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.59  E-value=1e-07  Score=70.57  Aligned_cols=81  Identities=14%  Similarity=0.085  Sum_probs=62.9

Q ss_pred             CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc---cccCccc
Q psy17460         46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS---VFKQKVD  122 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~~~D  122 (216)
                      ...+|..++|..+|.|..+..+++.+ ++|+|+|.+++++..++....    +++.++.+++  .++...   ...+.+|
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~~----~~~~~~~~~f--~~~~~~l~~~~~~~vd   87 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLHL----PGLTVVQGNF--RHLKRHLAALGVERVD   87 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCC----TTEEEEESCG--GGHHHHHHHTTCSCEE
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhccc----cceeEeehHH--HHHHHHHHHcCCCccC
Confidence            44688999999999999999888874 599999999999998886532    3799999999  443321   1226799


Q ss_pred             EEEEcCCCCCC
Q psy17460        123 TVIMNPPFGTR  133 (216)
Q Consensus       123 ~vi~npp~~~~  133 (216)
                      .|+.|.-+...
T Consensus        88 gIl~DLGvSs~   98 (182)
T d1wg8a2          88 GILADLGVSSF   98 (182)
T ss_dssp             EEEEECSCCHH
T ss_pred             EEEEEccCCHH
Confidence            99998765443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=4.2e-07  Score=73.21  Aligned_cols=92  Identities=16%  Similarity=0.091  Sum_probs=71.5

Q ss_pred             ccCCCcccCcc-ccCCHHHHHHHHHHHHhh--cCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHh
Q psy17460         16 NFSNPKVHLEQ-YHTPPHLAATILHTIQNN--YNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        16 ~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~--~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~   91 (216)
                      .+...+..+|| |-..+.+.+.+++.+...  .....+..|||+|+|.|.++..+...+ +.+++++|+|+...+..+..
T Consensus         7 ~l~k~kk~~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~   86 (322)
T d1i4wa_           7 DISKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAK   86 (322)
T ss_dssp             TTCSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHH
T ss_pred             hhhhhhhhccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh
Confidence            34556677887 778888999998876422  122356799999999999999988764 57999999999999988876


Q ss_pred             hhHhCCCceEEEEeccccccc
Q psy17460         92 KNEFEITNCDAILFEINEKSL  112 (216)
Q Consensus        92 ~~~~~~~~v~~~~~d~~~~~~  112 (216)
                      ...   .+++++.+|+  ..+
T Consensus        87 ~~~---~~~~ii~~D~--l~~  102 (322)
T d1i4wa_          87 FEG---SPLQILKRDP--YDW  102 (322)
T ss_dssp             TTT---SSCEEECSCT--TCH
T ss_pred             ccC---CCcEEEeCch--hhc
Confidence            542   2789999999  654

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.42  E-value=1.2e-06  Score=65.35  Aligned_cols=108  Identities=12%  Similarity=0.049  Sum_probs=68.8

Q ss_pred             CCCEEEEecCCCCHhH----HHHhHc----C-CCEEEEEeCChHHHHHHHHhhhHh------------------CC----
Q psy17460         49 DGKTVLDLGCGSGILT----FGSILL----G-ADFCFALECDKEILDIFIDNKNEF------------------EI----   97 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~----~~~~~~----~-~~~v~~iD~~~~~~~~~~~~~~~~------------------~~----   97 (216)
                      +..+||++|||||--+    +.+...    + .-+++|.|+|+.+++.|+...-..                  +.    
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            4569999999999843    223322    1 137999999999999998642110                  00    


Q ss_pred             ---------CceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHH
Q psy17460         98 ---------TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKI  168 (216)
Q Consensus        98 ---------~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~  168 (216)
                               ..+.+...+.  ...... ..+.||+|+|---+.                       .+.......+++.+
T Consensus       104 ~~~~~~~~~~~v~~~~~~~--~~~~~~-~~~~fDvI~CRNVLi-----------------------Yf~~~~~~~vl~~l  157 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNL--LEKQYN-VPGPFDAIFCRNVMI-----------------------YFDKTTQEDILRRF  157 (193)
T ss_dssp             EEEECHHHHTTEEEEECCT--TCSSCC-CCCCEEEEEECSSGG-----------------------GSCHHHHHHHHHHH
T ss_pred             eeehHHHHHHHHHHhhhhc--cccccC-CCCCccEEEeehhHH-----------------------hcCHHHHHHHHHHH
Confidence                     0234555555  332211 126899999944332                       24444567888889


Q ss_pred             HHhcCccceeeeeee
Q psy17460        169 QAFKNVEQVDVIAEM  183 (216)
Q Consensus       169 ~~~l~~~~g~~~~~~  183 (216)
                      .+.|+| +|.+++-.
T Consensus       158 ~~~L~p-GG~L~lG~  171 (193)
T d1af7a2         158 VPLLKP-DGLLFAGH  171 (193)
T ss_dssp             GGGEEE-EEEEEECT
T ss_pred             HHHhCC-CcEEEEec
Confidence            999999 99988733

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=4.2e-06  Score=61.59  Aligned_cols=107  Identities=18%  Similarity=0.105  Sum_probs=71.7

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccC
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQ  119 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~  119 (216)
                      .++.+|+|+||+.|.++..+.+. +. ..++++|+.+           ...++++.++.+|+  .+....      ....
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-----------~~~i~~~~~~~~d~--~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----------MDPIVGVDFLQGDF--RDELVMKALLERVGDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-----------CCCCTTEEEEESCT--TSHHHHHHHHHHHTTC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-----------ccccCCceEeeccc--ccchhhhhhhhhccCc
Confidence            47889999999999999887764 44 7999999876           23344799999999  442211      1236


Q ss_pred             cccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460        120 KVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM  183 (216)
Q Consensus       120 ~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  183 (216)
                      ++|+|++|...... .+..|.   .....+            ....+..+.++|++ +|.++...
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~---~~~~~L------------~~~~l~~a~~~Lk~-gG~fV~K~  136 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDI---PRAMYL------------VELALEMCRDVLAP-GGSFVVKV  136 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHH---HHHHHH------------HHHHHHHHHHHEEE-EEEEEEEE
T ss_pred             ceeEEEecccchhcccchhHH---HHHHHH------------HHHHHHhhhhccCC-CCcEEEEE
Confidence            79999999876654 111111   111111            12344557888899 88888855

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.36  E-value=3e-06  Score=65.40  Aligned_cols=71  Identities=13%  Similarity=0.048  Sum_probs=53.2

Q ss_pred             CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ...+|+|+|||+|.++..+++..+ .+++..|+ |+.++.      .....+++++.+|+  .+..     ...|++++.
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~------~~~~~ri~~~~gd~--~~~~-----p~~D~~~l~  146 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN------APPLSGIEHVGGDM--FASV-----PQGDAMILK  146 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT------CCCCTTEEEEECCT--TTCC-----CCEEEEEEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc------cCCCCCeEEecCCc--cccc-----ccceEEEEe
Confidence            346999999999999999998866 79999998 544432      11223799999999  6543     245999987


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      --+|..
T Consensus       147 ~vLh~~  152 (244)
T d1fp1d2         147 AVCHNW  152 (244)
T ss_dssp             SSGGGS
T ss_pred             hhhhhC
Confidence            766654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=98.21  E-value=1.9e-06  Score=66.24  Aligned_cols=58  Identities=24%  Similarity=0.214  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhh
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKN   93 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~   93 (216)
                      |..+.+.++.....     +|..|||++||+|+.+.++.+.+. +.+|+|++++.++.|+++++
T Consensus       198 P~~L~~~lI~~~s~-----~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         198 PRDLIERIIRASSN-----PNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CHHHHHHHHHHHCC-----TTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHhCC-----CCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence            45677777666643     789999999999999999999987 89999999999999999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=98.15  E-value=2.4e-06  Score=67.66  Aligned_cols=61  Identities=13%  Similarity=0.072  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE   96 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~   96 (216)
                      |..+.++++.....     +|..|||++||+|+.+.++...|. +.+|+|++++.++.|++++....
T Consensus       236 P~~L~~rlI~~~s~-----~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         236 PAKLPEFFIRMLTE-----PDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             CTHHHHHHHHHHCC-----TTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSC
T ss_pred             chHHHHHhhhhccc-----CCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhcc
Confidence            56777777776654     789999999999999999999987 89999999999999999886543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.07  E-value=5.3e-06  Score=63.98  Aligned_cols=86  Identities=12%  Similarity=0.060  Sum_probs=61.1

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ..+|+|+|||+|..+..+++..+ .+++..|+ |+.++.+.      ...+++++.+|+  .+..     ..+|++++.-
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~rv~~~~gD~--f~~~-----p~aD~~~l~~  146 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------GSNNLTYVGGDM--FTSI-----PNADAVLLKY  146 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CBTTEEEEECCT--TTCC-----CCCSEEEEES
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc------ccCceEEEecCc--ccCC-----CCCcEEEEEe
Confidence            46899999999999999988866 79999999 55544321      112899999999  6533     3679999988


Q ss_pred             CCCCCCCCCCHHHH---HHHhhcC
Q psy17460        129 PFGTRNCGIDLAFV---QYAADIS  149 (216)
Q Consensus       129 p~~~~~~~~~~~~~---~~~l~~~  149 (216)
                      -+|..+.....+.+   .+++.++
T Consensus       147 vLHdw~d~~~~~iL~~~~~al~pg  170 (244)
T d1fp2a2         147 ILHNWTDKDCLRILKKCKEAVTND  170 (244)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHSGG
T ss_pred             ecccCChHHHHHHHHHHHHHcCcc
Confidence            77766333333333   4455554

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.06  E-value=5.6e-06  Score=64.35  Aligned_cols=60  Identities=18%  Similarity=0.297  Sum_probs=51.3

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh
Q psy17460         30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF   95 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~   95 (216)
                      |..+.++++.....     +|..|||++||+|+.+.++...|. +.+|+|++++..+.|++++...
T Consensus       193 P~~L~~~~I~~~s~-----~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         193 PAAVIERLVRALSH-----PGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CHHHHHHHHHHHSC-----TTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHhhcC-----CCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            45667777666543     789999999999999999999987 9999999999999999998753

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.00  E-value=9.6e-06  Score=61.95  Aligned_cols=76  Identities=11%  Similarity=0.028  Sum_probs=51.4

Q ss_pred             CCCEEEEecCCCCHhHHHHhH----cC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460         49 DGKTVLDLGCGSGILTFGSIL----LG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        49 ~~~~vlD~g~GtG~~~~~~~~----~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ++++|||+|++.|..+..++.    .+ .++++|+|++++.....     ....++++++.+|..+.+.........+|.
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~~~~I~~i~gDs~~~~~~~~l~~~~~dl  154 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENITLHQGDCSDLTTFEHLREMAHPL  154 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hccccceeeeecccccHHHHHHHHhcCCCE
Confidence            678999999999987765543    23 37999999987543321     112238999999983333332233356899


Q ss_pred             EEEcCC
Q psy17460        124 VIMNPP  129 (216)
Q Consensus       124 vi~npp  129 (216)
                      ||.|..
T Consensus       155 IfID~~  160 (232)
T d2bm8a1         155 IFIDNA  160 (232)
T ss_dssp             EEEESS
T ss_pred             EEEcCC
Confidence            998865

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.81  E-value=0.00019  Score=54.79  Aligned_cols=69  Identities=13%  Similarity=0.056  Sum_probs=48.1

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ..+|+|+|||+|..+..+++..+ .++++.|+.+ .++.+      ....+++++.+|+  .+..     ...|.+++.-
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~------~~~~r~~~~~~d~--~~~~-----P~ad~~~l~~  147 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDA------PSYPGVEHVGGDM--FVSI-----PKADAVFMKW  147 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTC------CCCTTEEEEECCT--TTCC-----CCCSCEECSS
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhc------ccCCceEEecccc--cccC-----CCcceEEEEE
Confidence            46899999999999999999876 7999999954 33211      1112799999999  6532     1345666544


Q ss_pred             CCCC
Q psy17460        129 PFGT  132 (216)
Q Consensus       129 p~~~  132 (216)
                      -+|.
T Consensus       148 vlh~  151 (243)
T d1kyza2         148 ICHD  151 (243)
T ss_dssp             SSTT
T ss_pred             Eeec
Confidence            4443

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.60  E-value=0.00017  Score=56.69  Aligned_cols=73  Identities=29%  Similarity=0.378  Sum_probs=58.8

Q ss_pred             EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460         52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG  131 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~  131 (216)
                      +|+|++||.|.+..-+-+.|..-++++|+++.+++..+.|..      -+++.+|+  .++..... ..+|++++.||..
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~------~~~~~~Di--~~~~~~~~-~~~dll~~g~PCq   72 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------AKLIKGDI--SKISSDEF-PKCDGIIGGPPCQ   72 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC------SEEEESCT--TTSCGGGS-CCCSEEEECCCCT
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------CCCccCCh--hhCCHhHc-ccccEEeeccccc
Confidence            699999999999988877787677899999999888877753      35688999  66544321 5799999999988


Q ss_pred             CC
Q psy17460        132 TR  133 (216)
Q Consensus       132 ~~  133 (216)
                      ..
T Consensus        73 ~f   74 (324)
T d1dcta_          73 SW   74 (324)
T ss_dssp             TT
T ss_pred             cc
Confidence            76

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.50  E-value=0.00014  Score=57.54  Aligned_cols=76  Identities=20%  Similarity=0.218  Sum_probs=60.2

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ..+.+|+|++||-|.+...+-+.|..-+.++|+++.+++..+.|...       ...+|+  .++..... ..+|++++.
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~-------~~~~Di--~~~~~~~~-~~~Dll~gg   78 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE-------KPEGDI--TQVNEKTI-PDHDILCAG   78 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC-------CCBSCG--GGSCGGGS-CCCSEEEEE
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC-------CCcCch--hcCchhhc-ceeeeeecc
Confidence            36789999999999999988888876778999999999998888642       125888  55543321 579999999


Q ss_pred             CCCCCC
Q psy17460        128 PPFGTR  133 (216)
Q Consensus       128 pp~~~~  133 (216)
                      ||....
T Consensus        79 pPCq~f   84 (327)
T d2c7pa1          79 FPCQAF   84 (327)
T ss_dssp             CCCTTT
T ss_pred             cccchh
Confidence            998775

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.46  E-value=0.00017  Score=54.92  Aligned_cols=88  Identities=15%  Similarity=0.001  Sum_probs=49.3

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc
Q psy17460         35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD  113 (216)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  113 (216)
                      ..+.+..... ...++..|+|+|||.|..+..++.... ..|.|+++--+.-+ .-.....++.+-+++...+-  ....
T Consensus        53 ~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~~d--v~~l  128 (257)
T d2p41a1          53 AKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSGVD--VFFI  128 (257)
T ss_dssp             HHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECSCC--TTTS
T ss_pred             HHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCccccccccccccchhhhh--HHhc
Confidence            3344444433 335666899999999999999888754 57788887422100 00011111211234443333  2222


Q ss_pred             cccccCcccEEEEcCC
Q psy17460        114 SSVFKQKVDTVIMNPP  129 (216)
Q Consensus       114 ~~~~~~~~D~vi~npp  129 (216)
                         .....|+|+||..
T Consensus       129 ---~~~~~D~vlcDm~  141 (257)
T d2p41a1         129 ---PPERCDTLLCDIG  141 (257)
T ss_dssp             ---CCCCCSEEEECCC
T ss_pred             ---CCCcCCEEEeeCC
Confidence               2278999999964

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00018  Score=57.04  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=55.4

Q ss_pred             CCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccc-cCcccEEEE
Q psy17460         50 GKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVF-KQKVDTVIM  126 (216)
Q Consensus        50 ~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~~D~vi~  126 (216)
                      +.+|+|++||.|.+...+-..|.  .-+.++|+++.+++..+.|..     +..++.+|+  .++..... ...+|+++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~-----~~~~~~~di--~~~~~~~~~~~~~Dll~g   74 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTI--EGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCG--GGCCHHHHHHHCCSEEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC-----CCCcccCch--hhCCHhHcCCCCccEEEe
Confidence            45899999999998877766664  347899999999988887753     456788898  55443221 137899999


Q ss_pred             cCCCCCC
Q psy17460        127 NPPFGTR  133 (216)
Q Consensus       127 npp~~~~  133 (216)
                      .||....
T Consensus        75 gpPCq~f   81 (343)
T d1g55a_          75 SPPCQPF   81 (343)
T ss_dssp             CCC----
T ss_pred             ecccccc
Confidence            9998775

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.22  E-value=0.0016  Score=50.69  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=27.3

Q ss_pred             ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460         99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus        99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +=++++||+  ++.......+++|+|+.+|||...
T Consensus        12 ~~~l~~GD~--le~l~~l~~~sVdli~tDPPY~~~   44 (320)
T d1booa_          12 NGSMYIGDS--LELLESFPEESISLVMTSPPFALQ   44 (320)
T ss_dssp             SEEEEESCH--HHHGGGSCSSCEEEEEECCCCSSS
T ss_pred             CCEEEehhH--HHHHhhCccCCCCEEEECCCCcCC
Confidence            348999999  876665556899999999999864

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.042  Score=41.49  Aligned_cols=85  Identities=12%  Similarity=0.042  Sum_probs=61.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS------VF  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~------~~  117 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+..+.+++.++.+...++..+.+ ++.++.+|+.+.+-...      ..
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            478999999988876   2344666776 8999999999999888877776654 68889999943321111      01


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      -+..|++|.|......
T Consensus        87 ~g~iD~lVnnAg~~~~  102 (257)
T d1xg5a_          87 HSGVDICINNAGLARP  102 (257)
T ss_dssp             HCCCSEEEECCCCCCC
T ss_pred             cCCCCEEEecccccCC
Confidence            2579999998876654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.048  Score=40.91  Aligned_cols=85  Identities=15%  Similarity=0.139  Sum_probs=64.1

Q ss_pred             CCCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cc
Q psy17460         47 DIDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VF  117 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~  117 (216)
                      ...|+++|-.|++.|.   ++..+++.|. +|+..|.+++.++.....+...+- ++..+.+|+.+.+-...      ..
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            4579999999999887   4566777786 899999999999888888876654 78999999943332111      12


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      -+..|+++.|......
T Consensus        82 ~g~idilinnag~~~~   97 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYT   97 (244)
T ss_dssp             TCCCSEEEECCCCCCC
T ss_pred             cCCCceeEeecccccc
Confidence            2679999999877765

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.75  E-value=0.0041  Score=46.78  Aligned_cols=31  Identities=13%  Similarity=0.273  Sum_probs=25.0

Q ss_pred             EEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460        101 DAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       101 ~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      +++.||+  .+.....+.+++|+|+++|||...
T Consensus         6 ~i~~gDc--le~l~~lpd~sVdliitdPPY~~~   36 (256)
T d1g60a_           6 KIHQMNC--FDFLDQVENKSVQLAVIDPPYNLS   36 (256)
T ss_dssp             SEEECCH--HHHHHHSCTTCEEEEEECCCCSSC
T ss_pred             EEEeccH--HHHHhhCcCCCcCEEEECCCCCCC
Confidence            4899999  886555455899999999999754

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.73  E-value=0.0034  Score=47.88  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=24.9

Q ss_pred             EEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460        101 DAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       101 ~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~  133 (216)
                      -++.||+  ++.......+++|+|+++|||...
T Consensus         6 ~~~~~D~--le~l~~l~d~SIDliitDPPYn~~   36 (279)
T d1eg2a_           6 VYDVCDC--LDTLAKLPDDSVQLIICDPPYNIM   36 (279)
T ss_dssp             EEEECCH--HHHHHTSCTTCEEEEEECCCSBCC
T ss_pred             eEEechH--HHHHhhCcCCCccEEEECCCCCCC
Confidence            4788999  776555555899999999999764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.66  E-value=0.096  Score=39.44  Aligned_cols=84  Identities=20%  Similarity=0.274  Sum_probs=60.5

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc-------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS-------SVF  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~  117 (216)
                      .+|+++|-.|++.|.   ++..+++.|. +|+.++.+++.++.+.+.+...+. ++.++.+|+.+.+-..       ...
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHHh
Confidence            479999999987664   3445666676 899999999998888888877665 7888999994333110       112


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      ....|+++.|......
T Consensus        82 ~g~idilinnag~~~~   97 (258)
T d1ae1a_          82 DGKLNILVNNAGVVIH   97 (258)
T ss_dssp             TSCCCEEEECCCCCCC
T ss_pred             CCCcEEEecccccccc
Confidence            2468999988766554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.50  E-value=0.079  Score=39.75  Aligned_cols=84  Identities=17%  Similarity=0.176  Sum_probs=58.9

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+++++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++.+...+...+. ++.++.+|+.+.+-...      ..-
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEH   85 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            478899999977664   2233445565 899999999999888888776664 78899999933221111      112


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      +..|+++.|......
T Consensus        86 g~iDilvnnag~~~~  100 (251)
T d2c07a1          86 KNVDILVNNAGITRD  100 (251)
T ss_dssp             SCCCEEEECCCCCCC
T ss_pred             CCceeeeeccccccc
Confidence            589999998876554

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.37  E-value=0.027  Score=39.90  Aligned_cols=50  Identities=14%  Similarity=0.113  Sum_probs=35.3

Q ss_pred             HhhcCCCCCCEEEEecCCCCH-hHHHHhH-cCCCEEEEEeCChHHHHHHHHh
Q psy17460         42 QNNYNDIDGKTVLDLGCGSGI-LTFGSIL-LGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        42 ~~~~~~~~~~~vlD~g~GtG~-~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      .......+|++|+-+|||.-. .+..+++ .|+..++++|.+++.++.+++.
T Consensus        21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2          21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc
Confidence            333355689999999987433 3344444 4677889999999888887763

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.34  E-value=0.12  Score=38.82  Aligned_cols=84  Identities=18%  Similarity=0.240  Sum_probs=59.9

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc-------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS-------SVF  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~  117 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+..|.+++.++.+...+...+. ++.++.+|+.+.+-..       ...
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            479999999988765   3455666776 899999999999888888777664 7888999993322111       111


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      ....|+++.|.-....
T Consensus        84 ~~~idilvnnAG~~~~   99 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIY   99 (259)
T ss_dssp             TTCCCEEEECCCCCCC
T ss_pred             CCCceEEEECCceecc
Confidence            2378999998765543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.14  E-value=0.032  Score=40.47  Aligned_cols=46  Identities=24%  Similarity=0.208  Sum_probs=36.7

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhH-cCCCEEEEEeCChHHHHHHHHh
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSIL-LGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ...+|++||.+|||. |.++..+++ .++.+|+++|.+++.++.|++.
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            556899999999997 545566665 4668999999999999888765

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.06  E-value=0.062  Score=38.52  Aligned_cols=82  Identities=12%  Similarity=0.018  Sum_probs=55.5

Q ss_pred             CCCCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCccc
Q psy17460         46 NDIDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVD  122 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D  122 (216)
                      ...+|++||-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+....  ++.+...|..+.+.... .-+..|
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~-~~~~iD   94 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRAE-AVKGAH   94 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHHH-HTTTCS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc--chhhhhhhcccHHHHHH-HhcCcC
Confidence            36789999999977665   3345666776 89999999999888777765543  45566666622221111 115789


Q ss_pred             EEEEcCCCC
Q psy17460        123 TVIMNPPFG  131 (216)
Q Consensus       123 ~vi~npp~~  131 (216)
                      ++|.|.+..
T Consensus        95 ilin~Ag~g  103 (191)
T d1luaa1          95 FVFTAGAIG  103 (191)
T ss_dssp             EEEECCCTT
T ss_pred             eeeecCccc
Confidence            999986643

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.99  E-value=0.13  Score=38.79  Aligned_cols=84  Identities=18%  Similarity=0.147  Sum_probs=59.1

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-------VF  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~  117 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++.+...+...+. ++..+.+|+.+.+-...       ..
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            479999999988776   3455667776 899999999998888887766554 78999999933221111       01


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      .+..|+++.|......
T Consensus        84 ~g~idilvnnAG~~~~   99 (259)
T d1xq1a_          84 GGKLDILINNLGAIRS   99 (259)
T ss_dssp             TTCCSEEEEECCC---
T ss_pred             CCCcccccccccccCC
Confidence            2578999998766554

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.81  E-value=0.068  Score=40.35  Aligned_cols=82  Identities=17%  Similarity=0.199  Sum_probs=59.3

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++.+...+...+. ++..+.+|+.+.+-...      ..-
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            589999999988776   3455667776 899999999999988888776665 78899999933221110      111


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +..|++|.|....
T Consensus        81 g~iDilVnnaG~~   93 (260)
T d1zema1          81 GKIDFLFNNAGYQ   93 (260)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCeehhhhccc
Confidence            5799999886543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.15  Score=38.17  Aligned_cols=84  Identities=21%  Similarity=0.210  Sum_probs=58.3

Q ss_pred             CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.=   +..+++.|+ +|+..|.+++.++.+...++..+- ++.++.+|+.+.+-...      ..-
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4799999888776652   234555665 899999999999888888777654 68889999933221111      011


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      +..|+++.|.-....
T Consensus        87 g~iDilvnnAG~~~~  101 (255)
T d1fmca_          87 GKVDILVNNAGGGGP  101 (255)
T ss_dssp             SSCCEEEECCCCCCC
T ss_pred             CCCCEeeeCCcCCCC
Confidence            579999998765443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.79  E-value=0.034  Score=39.52  Aligned_cols=46  Identities=22%  Similarity=0.271  Sum_probs=35.1

Q ss_pred             CCCCCCEEEEecCC-CCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHh
Q psy17460         46 NDIDGKTVLDLGCG-SGILTFGSILL-GADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        46 ~~~~~~~vlD~g~G-tG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ...+|++||-+||| .|.++..+++. |+.+|+++|.+++.++.+++.
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            34678999999987 35555666654 556899999999999888654

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.79  E-value=0.087  Score=41.86  Aligned_cols=71  Identities=8%  Similarity=0.076  Sum_probs=43.9

Q ss_pred             CccccCCHHHHH----HHHHHHHh---hcCCCCCCEEEEecCCCCHhHHHHhHc--------CCCEEEEEeCChHHHHHH
Q psy17460         24 LEQYHTPPHLAA----TILHTIQN---NYNDIDGKTVLDLGCGSGILTFGSILL--------GADFCFALECDKEILDIF   88 (216)
Q Consensus        24 ~~~~~t~~~~~~----~~~~~~~~---~~~~~~~~~vlD~g~GtG~~~~~~~~~--------~~~~v~~iD~~~~~~~~~   88 (216)
                      -+.|.|..++..    .+...+..   .+...+...|+|+|+|+|.++..++..        ....++-+|.|+.+.+.-
T Consensus        47 ~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q  126 (365)
T d1zkda1          47 EGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQ  126 (365)
T ss_dssp             ---CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHH
T ss_pred             CCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHH
Confidence            345777765433    33222221   123334458999999999998765443        124689999999888777


Q ss_pred             HHhhhH
Q psy17460         89 IDNKNE   94 (216)
Q Consensus        89 ~~~~~~   94 (216)
                      +.++..
T Consensus       127 ~~~l~~  132 (365)
T d1zkda1         127 QTLLAG  132 (365)
T ss_dssp             HHHSTT
T ss_pred             HHHhcc
Confidence            776653

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.60  E-value=0.23  Score=37.11  Aligned_cols=81  Identities=17%  Similarity=0.090  Sum_probs=57.3

Q ss_pred             CCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccCc
Q psy17460         50 GKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQK  120 (216)
Q Consensus        50 ~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~  120 (216)
                      |+++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++.+.+.+...+. ++.++.+|+.+.+-...      ..-+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            6778888877666   3344666676 899999999999988888877665 78999999933331111      01257


Q ss_pred             ccEEEEcCCCCC
Q psy17460        121 VDTVIMNPPFGT  132 (216)
Q Consensus       121 ~D~vi~npp~~~  132 (216)
                      .|++|.|.-...
T Consensus        80 iDilVnnAG~~~   91 (257)
T d2rhca1          80 VDVLVNNAGRPG   91 (257)
T ss_dssp             CSEEEECCCCCC
T ss_pred             CCEEEecccccC
Confidence            999998865543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.56  E-value=0.23  Score=36.91  Aligned_cols=82  Identities=11%  Similarity=0.050  Sum_probs=57.0

Q ss_pred             CCCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cc
Q psy17460         47 DIDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VF  117 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~  117 (216)
                      ..+|+++|-.|++.|.   ++..+++.|. +|+..|.+++.++.+...+..    ++.++.+|+.+.+-...      ..
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELAD----AARYVHLDVTQPAQWKAAVDTAVTA   77 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGG----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhC----cceEEEeecCCHHHHHHHHHHHHHH
Confidence            3579999999988775   3455666776 899999999888776665543    67889999933221111      01


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      -+..|+++.|......
T Consensus        78 ~g~idilinnAG~~~~   93 (244)
T d1nffa_          78 FGGLHVLVNNAGILNI   93 (244)
T ss_dssp             HSCCCEEEECCCCCCC
T ss_pred             hCCCeEEEECCcccCC
Confidence            1578999998766554

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.53  E-value=0.15  Score=38.20  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=57.7

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++.+.+.+...+  ++.++.+|+.+.+-...      ..-
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPD--QIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCC--cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            478999999977765   2344666676 89999999998888777665333  78999999933321111      111


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      +..|++|.|......
T Consensus        81 G~iDiLVnnAg~~~~   95 (251)
T d1zk4a1          81 GPVSTLVNNAGIAVN   95 (251)
T ss_dssp             SSCCEEEECCCCCCC
T ss_pred             CCceEEEeccccccc
Confidence            579999988766544

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.51  E-value=0.076  Score=40.29  Aligned_cols=81  Identities=16%  Similarity=0.124  Sum_probs=58.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSS------V  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~------~  116 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++.+.+.+...+..  ++..+.+|+.+.+-...      .
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            579999999988775   3455666776 8999999999999888888766543  68999999933221111      0


Q ss_pred             ccCcccEEEEcCC
Q psy17460        117 FKQKVDTVIMNPP  129 (216)
Q Consensus       117 ~~~~~D~vi~npp  129 (216)
                      .-+..|+++.|.-
T Consensus        82 ~~g~iDilvnnAG   94 (272)
T d1xkqa_          82 QFGKIDVLVNNAG   94 (272)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCceEEEeCCc
Confidence            1157899998843

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.41  E-value=0.046  Score=38.84  Aligned_cols=46  Identities=15%  Similarity=0.125  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEecCCCCH-hHHHHhHc-CCCEEEEEeCChHHHHHHHHh
Q psy17460         46 NDIDGKTVLDLGCGSGI-LTFGSILL-GADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~-~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ...+|+.|+-.|||... .++.+++. |+.+|+++|.+++.++.|++.
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            45689999999998444 44555554 667999999999999988876

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.32  E-value=0.069  Score=43.03  Aligned_cols=50  Identities=20%  Similarity=0.262  Sum_probs=41.4

Q ss_pred             CCCCEEEEecCCCCHhHHHHhHc--CC-CEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460         48 IDGKTVLDLGCGSGILTFGSILL--GA-DFCFALECDKEILDIFIDNKNEFEI   97 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~~~~~--~~-~~v~~iD~~~~~~~~~~~~~~~~~~   97 (216)
                      .++.+++|+||-.|..+..++..  +. .+|+++|.++...+..++|++.+..
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            46789999999999988765543  22 6899999999999999999887654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.32  E-value=0.049  Score=38.62  Aligned_cols=49  Identities=20%  Similarity=0.200  Sum_probs=38.1

Q ss_pred             hhcCCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHHh
Q psy17460         43 NNYNDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        43 ~~~~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ......+|++|+-+|||. |.+++.+++. |+..|+.+|.+++.++.+++.
T Consensus        22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            334567899999999986 6666666664 667999999999888777764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.17  Score=37.56  Aligned_cols=80  Identities=19%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D  122 (216)
                      .+|+++|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+.....     ++..+..|+.+.+-...  ..-++.|
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~g~iD   78 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP-----GIEPVCVDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST-----TCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC-----CCeEEEEeCCCHHHHHHHHHHhCCce
Confidence            489999999988775   3455666776 89999999987766554432     57788889843322111  1126799


Q ss_pred             EEEEcCCCCCC
Q psy17460        123 TVIMNPPFGTR  133 (216)
Q Consensus       123 ~vi~npp~~~~  133 (216)
                      ++|.|......
T Consensus        79 ilVnnAg~~~~   89 (244)
T d1pr9a_          79 LLVNNAAVALL   89 (244)
T ss_dssp             EEEECCCCCCC
T ss_pred             EEEeccccccc
Confidence            99988766554

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.14  E-value=0.16  Score=38.01  Aligned_cols=85  Identities=19%  Similarity=0.190  Sum_probs=57.5

Q ss_pred             CCCCCEEEEecCCCCH---hHHHHhHcCCCEEEE-EeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------c
Q psy17460         47 DIDGKTVLDLGCGSGI---LTFGSILLGADFCFA-LECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------V  116 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~-iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~  116 (216)
                      +..|+++|-.|++.|.   ++..+++.|. +|+. ...+++..+.+...++..+. ++.++.+|+.+.+-...      .
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHH
Confidence            4579999988866553   3445666676 5654 56778888888888877776 78899999933221111      1


Q ss_pred             ccCcccEEEEcCCCCCC
Q psy17460        117 FKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~  133 (216)
                      .-+..|+++.|......
T Consensus        81 ~~g~idilinnag~~~~   97 (259)
T d1ja9a_          81 HFGGLDFVMSNSGMEVW   97 (259)
T ss_dssp             HHSCEEEEECCCCCCCC
T ss_pred             HcCCCcEEEeccccccc
Confidence            22579999998876654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.04  E-value=0.038  Score=38.78  Aligned_cols=45  Identities=18%  Similarity=0.051  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEecCC-CCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHh
Q psy17460         46 NDIDGKTVLDLGCG-SGILTFGSILL-GADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        46 ~~~~~~~vlD~g~G-tG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ...+|++|+-+|+| .|.++..+++. |+ +|+++|.+++.++.+++.
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc
Confidence            55689999999988 55566666654 65 899999999988887653

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.01  E-value=0.3  Score=36.20  Aligned_cols=81  Identities=17%  Similarity=0.190  Sum_probs=55.1

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|. +|+..|.+++.++...+.+..    ++..+.+|+.+.+-...      ..-
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGA----NGKGLMLNVTDPASIESVLEKIRAEF   76 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG----GEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCC----CCcEEEEEecCHHHhhhhhhhhhccc
Confidence            478999999988775   3344666676 899999999888776665543    67888999933221111      112


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      +..|+++.|......
T Consensus        77 g~iDilVnnAg~~~~   91 (243)
T d1q7ba_          77 GEVDILVNNAGITRD   91 (243)
T ss_dssp             CSCSEEEECCCCCCC
T ss_pred             CCcceehhhhhhccc
Confidence            579999988655443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.91  E-value=0.066  Score=37.84  Aligned_cols=47  Identities=17%  Similarity=0.102  Sum_probs=35.8

Q ss_pred             cCCCCCCEEEEecCCCCHh-HHHHhH-cCCCEEEEEeCChHHHHHHHHh
Q psy17460         45 YNDIDGKTVLDLGCGSGIL-TFGSIL-LGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        45 ~~~~~~~~vlD~g~GtG~~-~~~~~~-~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ....+|++|+-+|||...+ +..+++ .|+.+|+++|.+++.++.+++.
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            3567899999999985443 444554 4778999999999999888763

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.75  E-value=0.072  Score=37.66  Aligned_cols=45  Identities=18%  Similarity=0.230  Sum_probs=35.5

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++|+-+|||. |..+..+++. |+.+|+++|.+++.++.+++
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            456888999999985 6666666665 55689999999988888864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.74  E-value=0.096  Score=35.03  Aligned_cols=67  Identities=13%  Similarity=0.039  Sum_probs=43.7

Q ss_pred             EEEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         52 TVLDLGCGSGILTFGSIL----LGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      +|+=+|+  |.++..+++    .| ..|+.+|.|++.++.+....      ++.++.||+.+.+......-...|.+++-
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g-~~v~vid~d~~~~~~~~~~~------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI------DALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC------SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHHCC-CCcceecCChhhhhhhhhhh------hhhhccCcccchhhhhhcChhhhhhhccc
Confidence            4566665  666555443    34 48999999999888765432      46789999944443333323578888873

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.72  E-value=0.14  Score=38.89  Aligned_cols=81  Identities=19%  Similarity=0.181  Sum_probs=58.6

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSS------V  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~------~  116 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++.+...+...+.+  ++..+.+|+.+.+-...      .
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            478999999988775   3455666676 8999999999999888888776643  68999999933321111      0


Q ss_pred             ccCcccEEEEcCC
Q psy17460        117 FKQKVDTVIMNPP  129 (216)
Q Consensus       117 ~~~~~D~vi~npp  129 (216)
                      .-+..|+++.|.-
T Consensus        81 ~~G~iDilVnnAG   93 (274)
T d1xhla_          81 KFGKIDILVNNAG   93 (274)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCceEEEeecc
Confidence            1157899998854

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.72  E-value=0.36  Score=36.06  Aligned_cols=82  Identities=17%  Similarity=0.109  Sum_probs=55.9

Q ss_pred             CCCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cc
Q psy17460         47 DIDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VF  117 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~  117 (216)
                      +.+|+++|-.|++.|.   ++..+++.|+ +|+..|.+++.++...+.+..    ++.++.+|+.+.+-...      ..
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGD----AARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGG----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC----ceEEEEcccCCHHHHHHHHHHHHHH
Confidence            3589999999998875   3455666776 899999999877766554432    68899999933221111      01


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      -+..|++|.|.-....
T Consensus        77 ~g~iDilVnnAg~~~~   92 (254)
T d1hdca_          77 FGSVDGLVNNAGISTG   92 (254)
T ss_dssp             HSCCCEEEECCCCCCC
T ss_pred             cCCccEEEecCccccc
Confidence            1579999988755443

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.70  E-value=0.29  Score=36.28  Aligned_cols=79  Identities=16%  Similarity=0.129  Sum_probs=52.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D  122 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++...+...     ++..+..|+.+.+-...  ..-+..|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~g~iD   76 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP-----GIEPVCVDLGDWDATEKALGGIGPVD   76 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST-----TCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC-----CCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence            479999999987775   3344666676 89999999877665544332     57788899943322111  1115799


Q ss_pred             EEEEcCCCCC
Q psy17460        123 TVIMNPPFGT  132 (216)
Q Consensus       123 ~vi~npp~~~  132 (216)
                      +++.|.-...
T Consensus        77 ilVnnAg~~~   86 (242)
T d1cyda_          77 LLVNNAALVI   86 (242)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCcccc
Confidence            9998865443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.70  E-value=0.33  Score=36.15  Aligned_cols=83  Identities=14%  Similarity=0.146  Sum_probs=57.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhh-hHhCCCceEEEEecccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNK-NEFEITNCDAILFEINEKSLDSS------VF  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~------~~  117 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+..|.+++.++.+...+ +..+. ++.++.+|+.+.+-...      ..
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            478999999988775   3455667776 8999999998887766554 44454 68889999933221111      01


Q ss_pred             cCcccEEEEcCCCCC
Q psy17460        118 KQKVDTVIMNPPFGT  132 (216)
Q Consensus       118 ~~~~D~vi~npp~~~  132 (216)
                      -+..|++|.|.-...
T Consensus        81 ~g~iDiLVnnAG~~~   95 (251)
T d1vl8a_          81 FGKLDTVVNAAGINR   95 (251)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            157999999875543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.64  E-value=0.099  Score=36.42  Aligned_cols=46  Identities=20%  Similarity=0.215  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEecCC-CCHhHHHHhHcCCCEEEEEeCChHHHHHHHHh
Q psy17460         46 NDIDGKTVLDLGCG-SGILTFGSILLGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        46 ~~~~~~~vlD~g~G-tG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ...+|++|+-+||| .|.++..+++....+|+++|.+++.++.+++.
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc
Confidence            45688999999988 45555556655335999999999998888774

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.62  E-value=0.13  Score=38.72  Aligned_cols=81  Identities=12%  Similarity=0.050  Sum_probs=56.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++.+...+...+  .+.++.+|+.+.+-...      ..-
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD--VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC--ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            589999999988776   2344566676 89999999998887777665433  57889999933221111      111


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +..|++|.|.-..
T Consensus        81 g~iD~lVnnAG~~   93 (268)
T d2bgka1          81 GKLDIMFGNVGVL   93 (268)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCcceeccccccc
Confidence            5789999887543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.53  E-value=0.17  Score=38.42  Aligned_cols=85  Identities=19%  Similarity=0.224  Sum_probs=57.5

Q ss_pred             CCCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH-hCCCceEEEEecccccccccc------c
Q psy17460         47 DIDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNE-FEITNCDAILFEINEKSLDSS------V  116 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~------~  116 (216)
                      ..+|+++|-.|++.|.   ++..+++.|+ +|+.+|.+.+.++.+...+.. .+. ++.++.+|+.+.+-...      .
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~   99 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGN-KVHAIQCDVRDPDMVQNTVSELIK   99 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSS-CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCC-ceEEEEecccChHHHHHHhhhhhh
Confidence            3578999999987763   3445666675 999999999888776665533 343 68889999933332110      1


Q ss_pred             ccCcccEEEEcCCCCCC
Q psy17460        117 FKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~  133 (216)
                      ..+..|+++.|.-....
T Consensus       100 ~~g~iDilvnnAg~~~~  116 (294)
T d1w6ua_         100 VAGHPNIVINNAAGNFI  116 (294)
T ss_dssp             HTCSCSEEEECCCCCCC
T ss_pred             hccccchhhhhhhhccc
Confidence            22678999988765544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.42  E-value=0.16  Score=38.12  Aligned_cols=81  Identities=15%  Similarity=0.089  Sum_probs=58.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSS------V  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~------~  116 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+..|.+++.++.+...+...+..  ++.++.+|+.+.+-...      .
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            478999999988776   2345666776 8999999999999888887776543  68999999933321111      0


Q ss_pred             ccCcccEEEEcCC
Q psy17460        117 FKQKVDTVIMNPP  129 (216)
Q Consensus       117 ~~~~~D~vi~npp  129 (216)
                      .-+..|+++.|.-
T Consensus        82 ~~g~iDilvnnAG   94 (264)
T d1spxa_          82 KFGKLDILVNNAG   94 (264)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCCCEeecccc
Confidence            1157899998853

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.33  E-value=0.49  Score=35.15  Aligned_cols=79  Identities=13%  Similarity=0.143  Sum_probs=54.3

Q ss_pred             EEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccCccc
Q psy17460         52 TVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQKVD  122 (216)
Q Consensus        52 ~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~~D  122 (216)
                      ++|-.|++.|.   ++..+++.|+ +|+..|.+++.++.+...+...+. ++.++.+|+.+.+-...      ..-+..|
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            45777877655   2344566676 899999999999888888777665 78889999933221111      1125799


Q ss_pred             EEEEcCCCCC
Q psy17460        123 TVIMNPPFGT  132 (216)
Q Consensus       123 ~vi~npp~~~  132 (216)
                      ++|.|.-...
T Consensus        81 ilVnnAG~~~   90 (255)
T d1gega_          81 VIVNNAGVAP   90 (255)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEecccccc
Confidence            9998865544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.29  E-value=0.24  Score=37.03  Aligned_cols=81  Identities=19%  Similarity=0.151  Sum_probs=55.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+..|.+++.++.+...+   +- ++..+.+|+.+.+-...      ..-
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~~-~~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---GP-AACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---CT-TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CC-ceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            378899999987775   3445666675 8999999988777665544   32 68889999933331111      011


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      +..|+++.|.-....
T Consensus        78 g~iDilVnnAg~~~~   92 (256)
T d1k2wa_          78 GSIDILVNNAALFDL   92 (256)
T ss_dssp             SCCCEEEECCCCCCC
T ss_pred             CCccEEEeecccccc
Confidence            579999999776554

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.46  Score=35.55  Aligned_cols=85  Identities=20%  Similarity=0.295  Sum_probs=57.9

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|. +|+.++.+++.++.+........-..+..+..|..+......      ...
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            479999999999886   3455667776 999999999999887776554443367788888732221111      012


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      +..|+++.|......
T Consensus        91 g~~~~li~nag~~~~  105 (269)
T d1xu9a_          91 GGLDMLILNHITNTS  105 (269)
T ss_dssp             TSCSEEEECCCCCCC
T ss_pred             CCccccccccccccc
Confidence            568999887655443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=93.14  E-value=0.33  Score=36.37  Aligned_cols=84  Identities=15%  Similarity=0.105  Sum_probs=56.7

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCCh-HHHHHHHHhhhHhCCCceEEEEecccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDK-EILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VF  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~-~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~  117 (216)
                      .+|+++|-.|++.|.   ++..+++.|. +|+..+.+. +..+.+.+.++..+. ++.++.+|+.+.+-...      ..
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            489999999988775   3345666676 899999874 566766666666665 78899999933321111      01


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      -+..|++|.|.-....
T Consensus        83 ~G~iDiLVnnAG~~~~   98 (261)
T d1geea_          83 FGKLDVMINNAGLENP   98 (261)
T ss_dssp             HSCCCEEEECCCCCCC
T ss_pred             hCCCCEeeccceecCC
Confidence            1578999998755443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.11  E-value=0.17  Score=37.98  Aligned_cols=84  Identities=15%  Similarity=0.142  Sum_probs=55.9

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhh-hHhCCCceEEEEecccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNK-NEFEITNCDAILFEINEKSLDSS------VF  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~------~~  117 (216)
                      ++|+++|-.|++.|.   ++..+++.|+ +|+.+|.+++.+..+...+ +..+. ++.++.+|+.+.+-...      ..
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGV-KTKAYQCDVSNTDIVTKTIQQIDAD   84 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCC-ceEEEEccCCCHHHHHHHHHHHHHH
Confidence            578999999977665   3344666676 8999999887665554444 44454 78899999943331111      11


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      -+..|+++.|......
T Consensus        85 ~g~iDilVnnAg~~~~  100 (260)
T d1h5qa_          85 LGPISGLIANAGVSVV  100 (260)
T ss_dssp             SCSEEEEEECCCCCCC
T ss_pred             hCCCcEeccccccccc
Confidence            2579999998765543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.85  E-value=0.29  Score=36.63  Aligned_cols=82  Identities=16%  Similarity=0.110  Sum_probs=57.9

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS------VF  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~------~~  117 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+..|.+++.++.+...+...+-. ++..+.+|+.+.+-...      ..
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            478999999988776   3455777776 8999999999988877766555433 68889999933221111      01


Q ss_pred             cCcccEEEEcCCC
Q psy17460        118 KQKVDTVIMNPPF  130 (216)
Q Consensus       118 ~~~~D~vi~npp~  130 (216)
                      -+..|++|.|.-.
T Consensus        81 ~G~iDiLVnnAG~   93 (258)
T d1iy8a_          81 FGRIDGFFNNAGI   93 (258)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             hCCCCEEEECCcc
Confidence            1579999988643

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.85  E-value=0.52  Score=35.01  Aligned_cols=78  Identities=19%  Similarity=0.157  Sum_probs=53.5

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+..|.+++.++.+.....     ++.++.+|+.+.+-...      ..-
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~-----~~~~~~~Dvs~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELP-----GAVFILCDVTQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT-----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC-----CCeEEEccCCCHHHHHHHHHHHHHhc
Confidence            579999999988775   3344666676 89999999988776655432     67889999933221111      011


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +..|++|.|.-..
T Consensus        78 g~iDilVnnAG~~   90 (250)
T d1ydea1          78 GRLDCVVNNAGHH   90 (250)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEeccccc
Confidence            5789999987543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.17  Score=35.30  Aligned_cols=46  Identities=20%  Similarity=0.059  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEecCCCCHh-HHHHhHc-CCCEEEEEeCChHHHHHHHHh
Q psy17460         46 NDIDGKTVLDLGCGSGIL-TFGSILL-GADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~-~~~~~~~-~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ...++++|+-+|||...+ +..+++. |+.+|+++|.+++.++.+++.
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            456889999999975544 3445544 667999999999999887764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.71  E-value=0.41  Score=35.65  Aligned_cols=81  Identities=12%  Similarity=0.044  Sum_probs=54.3

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+..|.+++.++.+...+..    +..++.+|+.+.+-...      ..-
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~----~~~~~~~Dv~~~~~~~~~~~~~~~~~   78 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGE----RSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCT----TEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC----CeEEEEeecCCHHHHHHHHHHHHHHh
Confidence            478999999987764   3344666676 899999999887776555432    67788899832221111      011


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      +..|+++.|.-....
T Consensus        79 g~iDilVnnAG~~~~   93 (253)
T d1hxha_          79 GTLNVLVNNAGILLP   93 (253)
T ss_dssp             CSCCEEEECCCCCCC
T ss_pred             CCCCeEEecccccCC
Confidence            578999998765443

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.74  Score=35.05  Aligned_cols=84  Identities=15%  Similarity=0.046  Sum_probs=56.3

Q ss_pred             CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC----CceEEEEecccccccccc-----
Q psy17460         48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEI----TNCDAILFEINEKSLDSS-----  115 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~-----  115 (216)
                      .+|+++|-.|++.|.=   +..+++.|+ +|+.+|.+++.++.+...+.....    .++..+.+|+.+.+-...     
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            5899999999887762   344566676 899999999888776665543211    168899999933321111     


Q ss_pred             -cccCcccEEEEcCCCCC
Q psy17460        116 -VFKQKVDTVIMNPPFGT  132 (216)
Q Consensus       116 -~~~~~~D~vi~npp~~~  132 (216)
                       ..-+..|++|.|.....
T Consensus        89 ~~~~G~iDiLVnnAg~~~  106 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQF  106 (297)
T ss_dssp             HHHHSCCCEEEECCCCCC
T ss_pred             HHHhCCeEEEEeeccccc
Confidence             11157999998875443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.45  E-value=0.19  Score=34.72  Aligned_cols=46  Identities=20%  Similarity=0.121  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEecCCC-CHhHHHHhHcCCCEEEEEeCChHHHHHHHHh
Q psy17460         46 NDIDGKTVLDLGCGS-GILTFGSILLGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ...+|++|+-+|+|. |.++..+++....+|+++|.+++.++.+++.
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence            456899999999874 3344555554335999999999888887653

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=92.39  E-value=0.11  Score=39.58  Aligned_cols=102  Identities=9%  Similarity=-0.028  Sum_probs=67.1

Q ss_pred             EEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCcccEEEEcCCCC
Q psy17460         54 LDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVDTVIMNPPFG  131 (216)
Q Consensus        54 lD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D~vi~npp~~  131 (216)
                      +..-+|+-.++..+++.. .+.+.+|+.++-.+..++++....  ++.+...|.  .+-...  .+.+.--+|++||||.
T Consensus        87 l~~YPGSP~ia~~llR~~-Drl~l~ELHp~e~~~L~~~~~~~~--~~~v~~~DG--~~~l~allPP~~rRgLVLIDPpYE  161 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNK--KVYVNHTDG--VSKLNALLPPPEKRGLIFIDPSYE  161 (271)
T ss_dssp             CCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTS--CEEEECSCH--HHHHHHHCSCTTSCEEEEECCCCC
T ss_pred             cCcCCCCHHHHHHhCCCC-CceEEeecCHHHHHHHHHHhccCC--CceEEcCch--HHHHHhhCCCCCCceEEEecCCcC
Confidence            356777777776666654 599999999999998888875433  799999998  773311  1125667999999998


Q ss_pred             CC-CCCCCHHHHHHHhhcCCc--eEEEeeCcc
Q psy17460        132 TR-NCGIDLAFVQYAADISKV--VYSLHKTST  160 (216)
Q Consensus       132 ~~-~~~~~~~~~~~~l~~~~~--ly~~~~~~~  160 (216)
                      .. +.....+.+..+++....  +-.+++..+
T Consensus       162 ~k~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~  193 (271)
T d2oo3a1         162 RKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN  193 (271)
T ss_dssp             STTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred             CHHHHHHHHHHHHHHHHhCCCceEEEEeeccC
Confidence            65 222224455555555444  344455444

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.34  Score=36.03  Aligned_cols=84  Identities=17%  Similarity=0.120  Sum_probs=57.0

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc------ccc
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      +|+++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++.+...+....-. ++.++.+|+.+.+-...      ..-
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            68899999988766   2344566676 8999999999888777766543222 68899999933221111      011


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      +..|+++.|......
T Consensus        81 G~iDilVnnAg~~~~   95 (254)
T d2gdza1          81 GRLDILVNNAGVNNE   95 (254)
T ss_dssp             SCCCEEEECCCCCCS
T ss_pred             CCcCeeccccccccc
Confidence            579999988766543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.90  E-value=0.19  Score=35.29  Aligned_cols=71  Identities=13%  Similarity=0.033  Sum_probs=48.5

Q ss_pred             CCCEEEEecCCCCH-hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         49 DGKTVLDLGCGSGI-LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        49 ~~~~vlD~g~GtG~-~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      ++.+|+-+|+|.-. .++..+..--.+|..+|.+++.++..+.....    +++....+-  ..+....  ...|+||+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----~~~~~~~~~--~~l~~~~--~~aDivI~a  102 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----RVELLYSNS--AEIETAV--AEADLLIGA  102 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----GSEEEECCH--HHHHHHH--HTCSEEEEC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----cceeehhhh--hhHHHhh--ccCcEEEEe
Confidence            56799999999655 45555554224999999999999887776543    556655555  3332222  578999974

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.69  E-value=0.83  Score=34.09  Aligned_cols=84  Identities=15%  Similarity=0.114  Sum_probs=57.8

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCC-hHHHHHHHHhhhHhCCCceEEEEecccccccccc------cc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECD-KEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VF  117 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~-~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~  117 (216)
                      .+|+++|-.|++.|.   ++..++..|+ +|+..|.+ ++.++.+...+...+. ++.++.+|+.+.+-...      ..
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            578999999988775   4455667776 89998876 5666666666666665 78899999933221111      11


Q ss_pred             cCcccEEEEcCCCCCC
Q psy17460        118 KQKVDTVIMNPPFGTR  133 (216)
Q Consensus       118 ~~~~D~vi~npp~~~~  133 (216)
                      -+..|+++.|......
T Consensus        94 ~g~idilV~nag~~~~  109 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSF  109 (272)
T ss_dssp             HSCCCEEEECCCCCCC
T ss_pred             hCCCCccccccccchh
Confidence            1578999998876654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.64  E-value=0.28  Score=32.50  Aligned_cols=67  Identities=15%  Similarity=0.181  Sum_probs=40.6

Q ss_pred             EEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         53 VLDLGCGSGILTFGSIL----LGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        53 vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      ++=+|+  |.++..+++    .| ..|+.+|.|++.++.++..       ....+.||+.+.+......-...|.+++.-
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g-~~vvvid~d~~~~~~~~~~-------~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~   72 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMG-HEVLAVDINEEKVNAYASY-------ATHAVIANATEENELLSLGIRNFEYVIVAI   72 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTT-CCCEEEESCHHHHHHTTTT-------CSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred             EEEECC--CHHHHHHHHHHHHCC-CeEEEecCcHHHHHHHHHh-------CCcceeeecccchhhhccCCccccEEEEEc
Confidence            444455  555544443    34 4899999999888876422       346788999433333222225678887744


Q ss_pred             C
Q psy17460        129 P  129 (216)
Q Consensus       129 p  129 (216)
                      |
T Consensus        73 ~   73 (134)
T d2hmva1          73 G   73 (134)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.59  E-value=0.15  Score=33.82  Aligned_cols=65  Identities=15%  Similarity=0.094  Sum_probs=44.2

Q ss_pred             CCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCC
Q psy17460         58 CGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus        58 ~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      ||-|..+..+++.-. ..++.+|.+++..+.....       ++.++.||+.+.+......-+..+.+++..+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-------GANFVHGDPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-------TCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-------CccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence            567888877776533 5788999999887765432       5789999994444333323367888887553

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.35  E-value=0.24  Score=34.44  Aligned_cols=49  Identities=16%  Similarity=0.169  Sum_probs=35.0

Q ss_pred             hhcCCCCCCEEEEecCCC-CHhHHHHhH-cCCCEEEEEeCChHHHHHHHHh
Q psy17460         43 NNYNDIDGKTVLDLGCGS-GILTFGSIL-LGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        43 ~~~~~~~~~~vlD~g~Gt-G~~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ......+|++||-.|||- |.+++.+++ .|+..|+++|.+++..+.+++.
T Consensus        22 ~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          22 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             HhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            333567899999999872 223444444 4778999999999888887753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.98  E-value=0.28  Score=34.05  Aligned_cols=47  Identities=17%  Similarity=0.046  Sum_probs=35.2

Q ss_pred             cCCCCCCEEEEecCCCCHhH-HH-HhHcCCCEEEEEeCChHHHHHHHHh
Q psy17460         45 YNDIDGKTVLDLGCGSGILT-FG-SILLGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        45 ~~~~~~~~vlD~g~GtG~~~-~~-~~~~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ....+|++|+-+|+|.+... .. ++..+...|+++|.+++.++.+++.
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            35578999999999986654 33 3345667999999999888876653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.69  E-value=0.72  Score=34.24  Aligned_cols=84  Identities=12%  Similarity=0.070  Sum_probs=54.9

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCC-hHHHHHHHHhhh-HhCCCceEEEEecccccccccc------c
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECD-KEILDIFIDNKN-EFEITNCDAILFEINEKSLDSS------V  116 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~-~~~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~------~  116 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+..+.+ ++.++.+...+. ..+. ++.++.+|+.+.+-...      .
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~   79 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGV-KVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTS-CEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence            378899988888776   3345667776 89999986 566666665553 3344 78899999943221111      0


Q ss_pred             ccCcccEEEEcCCCCCC
Q psy17460        117 FKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~  133 (216)
                      .-+..|++|.|.-....
T Consensus        80 ~~G~iDiLVnnAG~~~~   96 (260)
T d1x1ta1          80 QMGRIDILVNNAGIQHT   96 (260)
T ss_dssp             HHSCCSEEEECCCCCCC
T ss_pred             HhCCCcEEEeecccccC
Confidence            11579999998665443

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.68  E-value=1.1  Score=32.91  Aligned_cols=77  Identities=16%  Similarity=0.146  Sum_probs=51.7

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|. +|+..|.+++.++.+.+.+      +...+.+|+.+.+-...      ..-
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~~   75 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV------GAHPVVMDVADPASVERGFAEALAHL   75 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc------CCeEEEEecCCHHHHHHHHHHHHHhc
Confidence            378999999988775   2344666676 8999999998877665433      46788899833221111      011


Q ss_pred             CcccEEEEcCCCC
Q psy17460        119 QKVDTVIMNPPFG  131 (216)
Q Consensus       119 ~~~D~vi~npp~~  131 (216)
                      +..|++|.|.-..
T Consensus        76 g~iDilVnnAG~~   88 (242)
T d1ulsa_          76 GRLDGVVHYAGIT   88 (242)
T ss_dssp             SSCCEEEECCCCC
T ss_pred             CCceEEEECCccc
Confidence            5799999886543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=90.24  E-value=1.9  Score=29.71  Aligned_cols=113  Identities=13%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             CCCCCEEEEecCCCCHhHH-HHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         47 DIDGKTVLDLGCGSGILTF-GSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~~-~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ..+++.|+=+|||-.+-++ ..+..+..+++-+..+++..+.....+....  ++.....|.  ..  .    ..+|+||
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~--~~~~~~~~~--~~--~----~~~diiI   84 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQAVSMDS--IP--L----QTYDLVI   84 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEEEEGGG--CC--C----SCCSEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc--ccchhhhcc--cc--c----cccceee
Confidence            4578899999998655443 3333455789999999887777766665433  344444433  22  1    5899999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCc-chHHHHHHHHHh
Q psy17460        126 MNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTS-TRESILKKIQAF  171 (216)
Q Consensus       126 ~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~-~~~~~~~~~~~~  171 (216)
                      ..-|-+......  .+....+.....+|...... ..-.+++.++..
T Consensus        85 N~tp~g~~~~~~--~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~  129 (171)
T d1p77a1          85 NATSAGLSGGTA--SVDAEILKLGSAFYDMQYAKGTDTPFIALCKSL  129 (171)
T ss_dssp             ECCCC---------CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHT
T ss_pred             eccccccccccc--chhhhhhcccceeeeeeccCcccHHHHHHHHHc
Confidence            888776431110  01112233333366655533 334566666654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.21  E-value=1.4  Score=32.51  Aligned_cols=77  Identities=17%  Similarity=0.160  Sum_probs=50.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|. +|+..|.+++..+.++..       +..++.+|+.+.+-...      ..-
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~~   74 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI-------GGAFFQVDLEDERERVRFVEEAAYAL   74 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH-------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-------CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence            579999999977665   2344666676 899999998876554322       34678889933221111      111


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +..|++|.|.-...
T Consensus        75 G~iDiLVnnAG~~~   88 (248)
T d2d1ya1          75 GRVDVLVNNAAIAA   88 (248)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCeEEEeCcCCC
Confidence            57999998865443

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=90.13  E-value=0.64  Score=34.94  Aligned_cols=77  Identities=25%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++........    ++..+.+|+.+.+-...      ..-
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~----~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGD----NVLGIVGDVRSLEDQKQAASRCVARF   77 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCC----CeeEEecccccHHHHHHHHHHHHHHh
Confidence            378999999987765   2344666676 899999999887765554432    78899999933321111      011


Q ss_pred             CcccEEEEcCC
Q psy17460        119 QKVDTVIMNPP  129 (216)
Q Consensus       119 ~~~D~vi~npp  129 (216)
                      +..|+++.|.-
T Consensus        78 g~idilvnnAG   88 (276)
T d1bdba_          78 GKIDTLIPNAG   88 (276)
T ss_dssp             SCCCEEECCCC
T ss_pred             CCccccccccc
Confidence            57899997753

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=89.68  E-value=1.4  Score=32.43  Aligned_cols=82  Identities=10%  Similarity=-0.008  Sum_probs=52.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+..|.++.  +.+...++..+- ++.++.+|+.+.+-...      ..-
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~--~~~~~~~~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~   78 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA--PEAEAAIRNLGR-RVLTVKCDVSQPGDVEAFGKQVISTF   78 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch--HHHHHHHHHcCC-cEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            478999999987765   3445666676 8999998764  233333444443 78899999933331111      011


Q ss_pred             CcccEEEEcCCCCCC
Q psy17460        119 QKVDTVIMNPPFGTR  133 (216)
Q Consensus       119 ~~~D~vi~npp~~~~  133 (216)
                      +..|+++.|.-....
T Consensus        79 G~iDilVnnAG~~~~   93 (247)
T d2ew8a1          79 GRCDILVNNAGIYPL   93 (247)
T ss_dssp             SCCCEEEECCCCCCC
T ss_pred             CCCCEEEECCCCCCC
Confidence            579999988655443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.55  E-value=0.76  Score=31.50  Aligned_cols=106  Identities=14%  Similarity=0.113  Sum_probs=57.4

Q ss_pred             EEEEecCCC-CH-hHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         52 TVLDLGCGS-GI-LTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        52 ~vlD~g~Gt-G~-~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      +|+=+|||. |. ++..+.+.+. .+|+|+|.+++.++.+++.-      .+.-...+.  .... .   ...|+|+...
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~------~~~~~~~~~--~~~~-~---~~~dlIila~   70 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG------IIDEGTTSI--AKVE-D---FSPDFVMLSS   70 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT------SCSEEESCG--GGGG-G---TCCSEEEECS
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh------cchhhhhhh--hhhh-c---cccccccccC
Confidence            577788874 33 4455656664 68999999999998877652      122222222  1111 1   3679998777


Q ss_pred             CCCCCCCCCCHHHHHHHhhcCCc-eEEEeeCcchHHHHHHHHHhcCc
Q psy17460        129 PFGTRNCGIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNV  174 (216)
Q Consensus       129 p~~~~~~~~~~~~~~~~l~~~~~-ly~~~~~~~~~~~~~~~~~~l~~  174 (216)
                      |-.     ...+.+......... ...+.-.+....+.+...+.+..
T Consensus        71 p~~-----~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~  112 (171)
T d2g5ca2          71 PVR-----TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK  112 (171)
T ss_dssp             CHH-----HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred             Cch-----hhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence            632     112234443333333 33344444444555555555444

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.48  E-value=0.77  Score=34.31  Aligned_cols=82  Identities=13%  Similarity=0.014  Sum_probs=54.3

Q ss_pred             CCEE-EEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccC
Q psy17460         50 GKTV-LDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQ  119 (216)
Q Consensus        50 ~~~v-lD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~  119 (216)
                      |++| |-.|++.|.   ++..+++.+...|+..+.+++..+.+...++..+. ++.++.+|+.+.+-...      ..-+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            5666 555655554   12334554335999999999999988888877665 78999999943332111      1125


Q ss_pred             cccEEEEcCCCCC
Q psy17460        120 KVDTVIMNPPFGT  132 (216)
Q Consensus       120 ~~D~vi~npp~~~  132 (216)
                      ..|++|.|.-...
T Consensus        81 ~iDiLVnNAGi~~   93 (275)
T d1wmaa1          81 GLDVLVNNAGIAF   93 (275)
T ss_dssp             SEEEEEECCCCCC
T ss_pred             CcEEEEEcCCcCC
Confidence            7999999975543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.57  E-value=0.75  Score=31.36  Aligned_cols=46  Identities=15%  Similarity=-0.011  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEecCCCCHh-HHHHhHcCCCEEEEEeCChHHHHHHHHh
Q psy17460         46 NDIDGKTVLDLGCGSGIL-TFGSILLGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        46 ~~~~~~~vlD~g~GtG~~-~~~~~~~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ...++++||-.|+|.-.+ +..+++....+|+++|.+++-++.++..
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence            456889999999886554 3555555335899999999988877663

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.26  E-value=0.61  Score=32.30  Aligned_cols=49  Identities=16%  Similarity=0.107  Sum_probs=35.8

Q ss_pred             hhcCCCCCCEEEEecCCCCHh-HHHHh-HcCCCEEEEEeCChHHHHHHHHh
Q psy17460         43 NNYNDIDGKTVLDLGCGSGIL-TFGSI-LLGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        43 ~~~~~~~~~~vlD~g~GtG~~-~~~~~-~~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ......+|++|+-.|+|-+.. +..++ ..+..+|+++|.+++-.+.+++.
T Consensus        22 ~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          22 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            333567899999999975443 33333 34668999999999998888765

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.14  E-value=0.5  Score=32.74  Aligned_cols=44  Identities=18%  Similarity=0.123  Sum_probs=33.3

Q ss_pred             CCCCEEEEecCCCCHh-HHHHhH-cCCCEEEEEeCChHHHHHHHHh
Q psy17460         48 IDGKTVLDLGCGSGIL-TFGSIL-LGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~-~~~~~~-~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      .+|++||-.|+|.... +..+++ .|+..|+++|.+++.++.+++.
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            5788999999875544 345554 4777999999999888887754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=88.03  E-value=1.1  Score=32.86  Aligned_cols=80  Identities=15%  Similarity=0.096  Sum_probs=54.0

Q ss_pred             CCCCEEEEecCCC--CH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--------
Q psy17460         48 IDGKTVLDLGCGS--GI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--------  114 (216)
Q Consensus        48 ~~~~~vlD~g~Gt--G~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--------  114 (216)
                      .+|+++|-.|+++  |.   ++..+++.|. +|+..+.+++..+.+.+.....+  +...+..|.  .+...        
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~   77 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDV--AEDASIDTMFAEL   77 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTT--CCCEEECCT--TCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcC--Ccceeeccc--chHHHHHHHHHHh
Confidence            4799999999866  53   4556777776 89999999888777777666555  455566666  33211        


Q ss_pred             ccccCcccEEEEcCCCCC
Q psy17460        115 SVFKQKVDTVIMNPPFGT  132 (216)
Q Consensus       115 ~~~~~~~D~vi~npp~~~  132 (216)
                      .......|.++.|..+..
T Consensus        78 ~~~~~~~d~~v~~a~~~~   95 (258)
T d1qsga_          78 GKVWPKFDGFVHSIGFAP   95 (258)
T ss_dssp             HTTCSSEEEEEECCCCCC
T ss_pred             hhcccccceEEEeecccc
Confidence            012256899998865543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=87.85  E-value=1.9  Score=31.51  Aligned_cols=81  Identities=15%  Similarity=0.074  Sum_probs=54.9

Q ss_pred             EEEEecCCCCH---hHHHHhHcCCC------EEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------c
Q psy17460         52 TVLDLGCGSGI---LTFGSILLGAD------FCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------V  116 (216)
Q Consensus        52 ~vlD~g~GtG~---~~~~~~~~~~~------~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~  116 (216)
                      +||-.|++.|.   ++..+++.|..      .|+..+.+++.++.....+...+. ++.++.+|+.+.+-...      .
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHH
Confidence            56777877775   23446666652      389999999999888877776664 78899999943331111      1


Q ss_pred             ccCcccEEEEcCCCCCC
Q psy17460        117 FKQKVDTVIMNPPFGTR  133 (216)
Q Consensus       117 ~~~~~D~vi~npp~~~~  133 (216)
                      .-+..|+++.|.-....
T Consensus        82 ~~g~iDilvnnAg~~~~   98 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRF   98 (240)
T ss_dssp             HTSCCSEEEECCCCCCC
T ss_pred             HcCCcceeecccccccC
Confidence            12579999988765543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=87.77  E-value=0.97  Score=33.16  Aligned_cols=80  Identities=19%  Similarity=0.156  Sum_probs=53.2

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK  118 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~  118 (216)
                      .+|+++|-.|++.|.   ++..+++.|. +|+..+.+.+.++.....+   +- ++.++.+|+.+.+-...      ..-
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAAL---EA-EAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC---CS-SEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CC-ceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            578999999988765   2344556665 9999999998776554443   22 68889999943332211      011


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      +..|++|.|.....
T Consensus        78 g~iDiLinnAg~~~   91 (241)
T d2a4ka1          78 GRLHGVAHFAGVAH   91 (241)
T ss_dssp             SCCCEEEEGGGGTT
T ss_pred             CCccEecccccccc
Confidence            57999999864443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.58  E-value=0.71  Score=31.92  Aligned_cols=45  Identities=18%  Similarity=0.097  Sum_probs=32.9

Q ss_pred             CCCCCCEEEEecC--CCCHhHHHHhHcCCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGC--GSGILTFGSILLGADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~--GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++||-.|+  |.|..++.+++....+|++++.+++..+.+++
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc
Confidence            4568999999996  35556666666533489999999877777654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.28  E-value=1  Score=31.96  Aligned_cols=38  Identities=11%  Similarity=0.017  Sum_probs=25.6

Q ss_pred             EEEEecCCCCHh--HHHHhHcCCCEEEEEeCChHHHHHHHH
Q psy17460         52 TVLDLGCGSGIL--TFGSILLGADFCFALECDKEILDIFID   90 (216)
Q Consensus        52 ~vlD~g~GtG~~--~~~~~~~~~~~v~~iD~~~~~~~~~~~   90 (216)
                      +|.-+|+|-=.+  +..++..|. +|+|+|+|++.++....
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            466677774332  344555665 89999999988876553

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.14  E-value=1.2  Score=27.83  Aligned_cols=69  Identities=7%  Similarity=0.031  Sum_probs=42.4

Q ss_pred             CCCEEEEecC-CCCHhH--HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         49 DGKTVLDLGC-GSGILT--FGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        49 ~~~~vlD~g~-GtG~~~--~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      ..++|.=+|. |+|-.+  ..+...|. .|.|.|......-   +.+...|   +.+..+..  .+..     ...|+|+
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~---~~L~~~G---i~v~~g~~--~~~i-----~~~d~vV   72 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVT---QRLAQAG---AKIYIGHA--EEHI-----EGASVVV   72 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHH---HHHHHTT---CEEEESCC--GGGG-----TTCSEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhh---hHHHHCC---CeEEECCc--cccC-----CCCCEEE
Confidence            4568888874 466544  44666776 9999998643221   1222334   45666666  3332     4679999


Q ss_pred             EcCCCC
Q psy17460        126 MNPPFG  131 (216)
Q Consensus       126 ~npp~~  131 (216)
                      ..+...
T Consensus        73 ~S~AI~   78 (96)
T d1p3da1          73 VSSAIK   78 (96)
T ss_dssp             ECTTSC
T ss_pred             ECCCcC
Confidence            887653

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.97  E-value=0.57  Score=34.57  Aligned_cols=79  Identities=15%  Similarity=0.219  Sum_probs=50.4

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVD  122 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D  122 (216)
                      .+|+++|-.|++.|.   .+..+++.|. +|+.+|.+++.++...+    . . +++....|+...+....  ..-...|
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~----~-~-~~~~~~~d~~~~~~~~~~~~~~~~id   76 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEK----Y-P-GIQTRVLDVTKKKQIDQFANEVERLD   76 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGG----S-T-TEEEEECCTTCHHHHHHHHHHCSCCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----c-c-CCceeeeeccccccccccccccccce
Confidence            589999999977665   2344666675 99999999876544222    1 1 56677777732222111  1125789


Q ss_pred             EEEEcCCCCCC
Q psy17460        123 TVIMNPPFGTR  133 (216)
Q Consensus       123 ~vi~npp~~~~  133 (216)
                      .++.|..+...
T Consensus        77 ~lVn~ag~~~~   87 (245)
T d2ag5a1          77 VLFNVAGFVHH   87 (245)
T ss_dssp             EEEECCCCCCC
T ss_pred             eEEecccccCC
Confidence            99998777665

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=86.58  E-value=0.93  Score=31.08  Aligned_cols=46  Identities=15%  Similarity=0.109  Sum_probs=31.9

Q ss_pred             cCCCCCCEEEEecCCC-CHhHHHHhHcCCCEEEEEeCChHHHHHHHH
Q psy17460         45 YNDIDGKTVLDLGCGS-GILTFGSILLGADFCFALECDKEILDIFID   90 (216)
Q Consensus        45 ~~~~~~~~vlD~g~Gt-G~~~~~~~~~~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ....+|++|+-.|||. |.++..+++..-.+++++|.+++..+.+++
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc
Confidence            3567899999999863 444555555422478899999887776654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.51  E-value=2.5  Score=30.60  Aligned_cols=70  Identities=19%  Similarity=0.107  Sum_probs=46.3

Q ss_pred             CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCcccE
Q psy17460         49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVDT  123 (216)
Q Consensus        49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D~  123 (216)
                      +|+++|-.|++.|.   ++..+++.|+ +|+..|.+++.++.       .   ..+++.+|+  .+....  ..-+.+|+
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~~-------~---~~~~~~~Dv--~~~~~~~~~~~g~iD~   69 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLKR-------S---GHRYVVCDL--RKDLDLLFEKVKEVDI   69 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH-------T---CSEEEECCT--TTCHHHHHHHSCCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHh-------c---CCcEEEcch--HHHHHHHHHHhCCCcE
Confidence            68999999988765   2344666676 89999999865543       1   235677888  442111  12267999


Q ss_pred             EEEcCCCC
Q psy17460        124 VIMNPPFG  131 (216)
Q Consensus       124 vi~npp~~  131 (216)
                      ++.|.-..
T Consensus        70 lVnnAG~~   77 (234)
T d1o5ia_          70 LVLNAGGP   77 (234)
T ss_dssp             EEECCCCC
T ss_pred             EEeccccc
Confidence            99986443

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.27  E-value=1.8  Score=31.73  Aligned_cols=81  Identities=10%  Similarity=0.015  Sum_probs=54.3

Q ss_pred             CCCCEEEEecCCC--C--H-hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------c
Q psy17460         48 IDGKTVLDLGCGS--G--I-LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------V  116 (216)
Q Consensus        48 ~~~~~vlD~g~Gt--G--~-~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~  116 (216)
                      .+|+++|-.|++.  |  . ++..+++.|+ +|+..+.++...+.+.+.....+  +..++.+|+.+.+-...      .
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~   82 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKE   82 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccC--cccccccccCCHHHHHHHHHHHHH
Confidence            5899999999754  4  3 3455777776 79999999887777766665544  56788999833221111      0


Q ss_pred             ccCcccEEEEcCCCC
Q psy17460        117 FKQKVDTVIMNPPFG  131 (216)
Q Consensus       117 ~~~~~D~vi~npp~~  131 (216)
                      .-+..|+++.|..+.
T Consensus        83 ~~g~iDilVnnag~~   97 (256)
T d1ulua_          83 AFGGLDYLVHAIAFA   97 (256)
T ss_dssp             HHSSEEEEEECCCCC
T ss_pred             hcCCceEEEeccccc
Confidence            115789999876543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.13  E-value=1  Score=30.85  Aligned_cols=46  Identities=15%  Similarity=0.180  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEecCC--CCHhHHHHhH-cCCCEEEEEeCChHHHHHHHHh
Q psy17460         46 NDIDGKTVLDLGCG--SGILTFGSIL-LGADFCFALECDKEILDIFIDN   91 (216)
Q Consensus        46 ~~~~~~~vlD~g~G--tG~~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~   91 (216)
                      ...++++|+-.||+  .|.++..+++ .+...|+++|.+++-++.+++.
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            55688999999974  4444554444 4667999999999888887753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.93  E-value=3  Score=28.65  Aligned_cols=85  Identities=13%  Similarity=0.133  Sum_probs=49.7

Q ss_pred             HHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh-CCCce-EEEEeccccccccccccc
Q psy17460         41 IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF-EITNC-DAILFEINEKSLDSSVFK  118 (216)
Q Consensus        41 ~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-~~~~v-~~~~~d~~~~~~~~~~~~  118 (216)
                      +.......++++||=+|+|--+-++..+..+..+++-+..+++..+.....+... ..... .+-..+.  ....     
T Consensus         9 l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-----   81 (177)
T d1nvta1           9 LEEEIGRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGL--DVDL-----   81 (177)
T ss_dssp             HHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSSEEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECT--TCCC-----
T ss_pred             HHHhCCCcCCCEEEEECCcHHHHHHHHHHccccceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhh--hhcc-----
Confidence            3333345689999999998555554444444568999999887776554444322 21111 1222333  2221     


Q ss_pred             CcccEEEEcCCCCC
Q psy17460        119 QKVDTVIMNPPFGT  132 (216)
Q Consensus       119 ~~~D~vi~npp~~~  132 (216)
                      ..+|+|+...|-+.
T Consensus        82 ~~~dliIn~tp~g~   95 (177)
T d1nvta1          82 DGVDIIINATPIGM   95 (177)
T ss_dssp             TTCCEEEECSCTTC
T ss_pred             chhhhhccCCcccc
Confidence            57899987777654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=85.76  E-value=0.81  Score=30.87  Aligned_cols=71  Identities=15%  Similarity=0.071  Sum_probs=42.3

Q ss_pred             EEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460         53 VLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP  128 (216)
Q Consensus        53 vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np  128 (216)
                      |+=+|+|  ..+..++    ..+ ..++.+|.+++............   ++.++.||+.+.+......-+..|.+++..
T Consensus         6 iII~G~g--~~g~~l~~~L~~~~-~~v~vId~d~~~~~~~~~~~~~~---~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~   79 (153)
T d1id1a_           6 FIVCGHS--ILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRLGD---NADVIPGDSNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             EEEECCS--HHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHCT---TCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred             EEEECCC--HHHHHHHHHHHHcC-CCEEEEeccchhHHHHHHHhhcC---CcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence            5555664  5444433    334 48999999987654433333221   578999999444433333336788888754


Q ss_pred             C
Q psy17460        129 P  129 (216)
Q Consensus       129 p  129 (216)
                      +
T Consensus        80 ~   80 (153)
T d1id1a_          80 D   80 (153)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.57  E-value=1.4  Score=32.38  Aligned_cols=60  Identities=8%  Similarity=0.065  Sum_probs=43.0

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhH---cCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSIL---LGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEIN  108 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~---~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~  108 (216)
                      ..|+++|-.|++.|.   ++..+++   .| .+|+.++.+++.++.+...+...+.. ++.++.+|+.
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs   70 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLG   70 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCC-CEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCC
Confidence            468777877877766   2233444   23 48999999999998887777654432 7899999993

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=84.58  E-value=1.2  Score=30.98  Aligned_cols=124  Identities=14%  Similarity=0.126  Sum_probs=62.2

Q ss_pred             CCCCCEEEEecCCCCHhH--HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccE
Q psy17460         47 DIDGKTVLDLGCGSGILT--FGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDT  123 (216)
Q Consensus        47 ~~~~~~vlD~g~GtG~~~--~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~  123 (216)
                      ..++++|+-+|||--.-+  ..+...+..+++-++.+++..+.+...++..+.. .......+..+.+.... ....+|+
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~di   93 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE-ALASADI   93 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH-HHHTCSE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhh-hhcccce
Confidence            457899999999843333  3355567789999999877666555433322110 23344444411111111 1147899


Q ss_pred             EEEcCCCCCCCCCCCHHHH-HHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460        124 VIMNPPFGTRNCGIDLAFV-QYAADISKVVYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus       124 vi~npp~~~~~~~~~~~~~-~~~l~~~~~ly~~~~~~~~~~~~~~~~~~  171 (216)
                      ||..-|-+......+.-.. ...+.....+|.+......-.+++.++..
T Consensus        94 iIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T~ll~~a~~~  142 (182)
T d1vi2a1          94 LTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQA  142 (182)
T ss_dssp             EEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSCHHHHHHHTT
T ss_pred             eccccCCccccccchhhhhHHHhhhcchhhHHhhcCccccHHHHHHHHC
Confidence            9976665533110000000 01112222266666555555666666543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=84.56  E-value=2  Score=31.60  Aligned_cols=80  Identities=11%  Similarity=0.081  Sum_probs=51.1

Q ss_pred             CCCCEEEEecCCC----CH-hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-------
Q psy17460         48 IDGKTVLDLGCGS----GI-LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-------  115 (216)
Q Consensus        48 ~~~~~vlD~g~Gt----G~-~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-------  115 (216)
                      .+|+++|-.|++.    |. ++..+++.|. +|+..+.++...+.++...+..+  ...+...|+  ......       
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~--~~~~~~~d~--~~~~~~~~~~~~~   77 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELN--SPYVYELDV--SKEEHFKSLYNSV   77 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTT--CCCEEECCT--TCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCC--ceeEeeecc--cchhhHHHHHHHH
Confidence            4799999999632    33 3344666676 89999999876666655544433  566777777  432111       


Q ss_pred             -cccCcccEEEEcCCCCC
Q psy17460        116 -VFKQKVDTVIMNPPFGT  132 (216)
Q Consensus       116 -~~~~~~D~vi~npp~~~  132 (216)
                       ..-+.+|.++.|..+..
T Consensus        78 ~~~~g~id~lV~nag~~~   95 (274)
T d2pd4a1          78 KKDLGSLDFIVHSVAFAP   95 (274)
T ss_dssp             HHHTSCEEEEEECCCCCC
T ss_pred             HHHcCCCCeEEeeccccc
Confidence             12257899998876554

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=83.80  E-value=2.3  Score=31.30  Aligned_cols=81  Identities=14%  Similarity=0.023  Sum_probs=47.1

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc--cc-------
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD--SS-------  115 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~-------  115 (216)
                      .+|++||-.|++.|.   ++..+++.|+.-++..+..++....+ +.....+-.++.++..|.  ....  ..       
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~-~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~~~~~   79 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA-ELKAINPKVNITFHTYDV--TVPVAESKKLLKKIF   79 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH-HHHHHCTTSEEEEEECCT--TSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH-HHHhhCCCCCEEEEEeec--CCCHHHHHHHHHHHH
Confidence            479999999988877   34556667773344445544432222 222222222788899888  4211  00       


Q ss_pred             cccCcccEEEEcCCCC
Q psy17460        116 VFKQKVDTVIMNPPFG  131 (216)
Q Consensus       116 ~~~~~~D~vi~npp~~  131 (216)
                      ..-+..|+++.|.-..
T Consensus        80 ~~~g~iDilvnnAG~~   95 (254)
T d1sbya1          80 DQLKTVDILINGAGIL   95 (254)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHcCCCCEEEeCCCCC
Confidence            0125799999988654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.76  E-value=2.1  Score=26.28  Aligned_cols=65  Identities=14%  Similarity=0.110  Sum_probs=36.5

Q ss_pred             EEEec-CCCCHhH--HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCC
Q psy17460         53 VLDLG-CGSGILT--FGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus        53 vlD~g-~GtG~~~--~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      |-=+| ||+|-.+  ..+...|. .|.|.|..+...-   ..++..|+   ++..+.-  .+..     ...|+|+..+.
T Consensus         4 ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t---~~L~~~Gi---~i~~gh~--~~~i-----~~~d~vV~SsA   69 (89)
T d1j6ua1           4 IHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERT---AYLRKLGI---PIFVPHS--ADNW-----YDPDLVIKTPA   69 (89)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHH---HHHHHTTC---CEESSCC--TTSC-----CCCSEEEECTT
T ss_pred             EEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhH---HHHHHCCC---eEEeeec--cccc-----CCCCEEEEecC
Confidence            33344 3455444  33555565 9999999864322   23555564   4444422  2222     36799998876


Q ss_pred             CC
Q psy17460        130 FG  131 (216)
Q Consensus       130 ~~  131 (216)
                      ..
T Consensus        70 I~   71 (89)
T d1j6ua1          70 VR   71 (89)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=83.68  E-value=0.16  Score=31.69  Aligned_cols=71  Identities=15%  Similarity=0.192  Sum_probs=41.1

Q ss_pred             CCCCEEEEecCC-CCHhHHH-HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCG-SGILTFG-SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~G-tG~~~~~-~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .++++|+-+|.| ||..+.. +.+.|. +|++.|..+..-.  ...+..    .+.+..+..  .....    ..+|.|+
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~~~~--~~~~~~----~~~~~~~~~--~~~~~----~~~d~vi   69 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTPPG--LDKLPE----AVERHTGSL--NDEWL----MAADLIV   69 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSSCTT--GGGSCT----TSCEEESBC--CHHHH----HHCSEEE
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcCchh--HHHHhh----ccceeeccc--chhhh----ccCCEEE
Confidence            478899999998 5543333 455554 8999998543111  111111    344555544  22211    4789999


Q ss_pred             EcCCCC
Q psy17460        126 MNPPFG  131 (216)
Q Consensus       126 ~npp~~  131 (216)
                      ..|-..
T Consensus        70 ~SPGi~   75 (93)
T d2jfga1          70 ASPGIA   75 (93)
T ss_dssp             ECTTSC
T ss_pred             ECCCCC
Confidence            988653

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=83.57  E-value=0.29  Score=37.70  Aligned_cols=73  Identities=21%  Similarity=0.219  Sum_probs=41.3

Q ss_pred             EEEEecCCCCHhHHHHhH----cCCCEEEEEeCC----hHHHHHHHHhhhHhCCCceEEEEecccccccccc-cccCccc
Q psy17460         52 TVLDLGCGSGILTFGSIL----LGADFCFALECD----KEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-VFKQKVD  122 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~----~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~D  122 (216)
                      +||-+| |+|.++..++.    .| ..|+++|..    .+........    ...+++++.+|+.+.+.... .....+|
T Consensus         2 KiLItG-~tGfIG~~l~~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~l~~~~~~~~~d   75 (338)
T d1udca_           2 RVLVTG-GSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERL----GGKHPTFVEGDIRNEALMTEILHDHAID   75 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHHHHHHH----HTSCCEEEECCTTCHHHHHHHHHHTTCS
T ss_pred             EEEEEC-CCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHhh----cCCCCEEEEeecCCHHHHHHHHhccCCC
Confidence            456555 78988866554    34 489999852    2222222221    11278999999933332211 1124789


Q ss_pred             EEEEcCCC
Q psy17460        123 TVIMNPPF  130 (216)
Q Consensus       123 ~vi~npp~  130 (216)
                      .||-...+
T Consensus        76 ~ViHlAa~   83 (338)
T d1udca_          76 TVIHFAGL   83 (338)
T ss_dssp             EEEECCSC
T ss_pred             EEEECCCc
Confidence            99855443

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.52  E-value=1.5  Score=32.00  Aligned_cols=55  Identities=16%  Similarity=0.140  Sum_probs=39.6

Q ss_pred             CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460         48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEI  107 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~  107 (216)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+.+|.+.+.++...+.+..    +......|.
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~   60 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGN----NCVFAPADV   60 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCT----TEEEEECCT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC----Ccccccccc
Confidence            589999999988776   2345666776 899999998777665554432    556666666

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.01  E-value=6  Score=28.64  Aligned_cols=79  Identities=9%  Similarity=0.004  Sum_probs=49.7

Q ss_pred             EEEEecCCCCHhHHH----HhHcCCCEEEEEeC-ChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccCc
Q psy17460         52 TVLDLGCGSGILTFG----SILLGADFCFALEC-DKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQK  120 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~-~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~  120 (216)
                      +||-.|++.| ++..    +++.|+ +|+..+. +++..+.+.+.++..+- ++.++.+|+.+.+-...      ..-+.
T Consensus         3 V~lITGas~G-IG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           3 VVVVTGASRG-IGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             EEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            4566666555 4433    555565 7877665 67777777777776665 78899999943322111      11257


Q ss_pred             ccEEEEcCCCCCC
Q psy17460        121 VDTVIMNPPFGTR  133 (216)
Q Consensus       121 ~D~vi~npp~~~~  133 (216)
                      .|+++.|.-....
T Consensus        80 iDiLVnnAg~~~~   92 (244)
T d1edoa_          80 IDVVVNNAGITRD   92 (244)
T ss_dssp             CSEEEECCCCCCC
T ss_pred             CCccccccccccc
Confidence            9999988755443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=82.40  E-value=1.4  Score=30.23  Aligned_cols=45  Identities=4%  Similarity=-0.114  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEecCCC--CHhHHHHhHcCCCEEEEEeCChHHHHHHHH
Q psy17460         46 NDIDGKTVLDLGCGS--GILTFGSILLGADFCFALECDKEILDIFID   90 (216)
Q Consensus        46 ~~~~~~~vlD~g~Gt--G~~~~~~~~~~~~~v~~iD~~~~~~~~~~~   90 (216)
                      ...+|++||-.|+|.  |..++.+++....+|++++.+++-.+.+++
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~   71 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK   71 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh
Confidence            446789999987664  556666776533599999999998888764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=81.47  E-value=2.5  Score=28.55  Aligned_cols=100  Identities=13%  Similarity=0.148  Sum_probs=51.2

Q ss_pred             EEEEecCCC-C-HhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCC
Q psy17460         52 TVLDLGCGS-G-ILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPP  129 (216)
Q Consensus        52 ~vlD~g~Gt-G-~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp  129 (216)
                      +|.=+|+|. | .++..+.+.|. +|++.|.+++.++.+++.    +.  +.....+.   +..     ...|+||..-|
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~----~~--~~~~~~~~---~~~-----~~~DiIilavp   66 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER----QL--VDEAGQDL---SLL-----QTAKIIFLCTP   66 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TS--CSEEESCG---GGG-----TTCSEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHh----hc--cceeeeec---ccc-----cccccccccCc
Confidence            466676652 2 23344555554 899999999888776553    21  11122222   221     57899997666


Q ss_pred             CCCCCCCCCHHHHHHHhhcCCc-eEEEeeCcchHHHHHHHHHh
Q psy17460        130 FGTRNCGIDLAFVQYAADISKV-VYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~-ly~~~~~~~~~~~~~~~~~~  171 (216)
                      ..     .-.+.++........ .+.+...+..........+.
T Consensus        67 ~~-----~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~  104 (165)
T d2f1ka2          67 IQ-----LILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQL  104 (165)
T ss_dssp             HH-----HHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHH
T ss_pred             Hh-----hhhhhhhhhhhhcccccceeeccccchHHHHHHHHh
Confidence            32     112244444443333 33333344444444444444

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=80.67  E-value=0.49  Score=36.26  Aligned_cols=72  Identities=15%  Similarity=0.078  Sum_probs=42.9

Q ss_pred             EEEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460         52 TVLDLGCGSGILTFGSIL----LGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN  127 (216)
Q Consensus        52 ~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n  127 (216)
                      +||-.|+ +|.++..+++    .|...|+++|.......      .....++++++.+|+.+.+.........+|+|+-.
T Consensus         2 KILITG~-tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~------~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           2 RVLILGV-NGFIGNHLTERLLREDHYEVYGLDIGSDAIS------RFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             EEEEETC-SSHHHHHHHHHHHHSTTCEEEEEESCCGGGG------GGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             EEEEECC-CcHHHHHHHHHHHHCCCCEEEEEeCCCcchh------hhccCCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            5777765 9988866554    45458999998643211      11122379999999832221111111469999865


Q ss_pred             CCC
Q psy17460        128 PPF  130 (216)
Q Consensus       128 pp~  130 (216)
                      ...
T Consensus        75 a~~   77 (342)
T d2blla1          75 VAI   77 (342)
T ss_dssp             BCC
T ss_pred             ccc
Confidence            544

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=80.39  E-value=6.5  Score=26.61  Aligned_cols=108  Identities=15%  Similarity=0.093  Sum_probs=59.0

Q ss_pred             CCCCEEEEecCCCCHhHHH--HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460         48 IDGKTVLDLGCGSGILTFG--SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI  125 (216)
Q Consensus        48 ~~~~~vlD~g~GtG~~~~~--~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi  125 (216)
                      .++++||-+|||--.-++.  +.+.|..+++-+..+++..+.....+   +.   ..+  +.  ..   .   ..+|+||
T Consensus        15 ~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~---~~---~~~--~~--~~---~---~~~DliI   78 (167)
T d1npya1          15 NKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY---GY---AYI--NS--LE---N---QQADILV   78 (167)
T ss_dssp             CTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH---TC---EEE--SC--CT---T---CCCSEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh---hh---hhh--hc--cc---c---cchhhhe
Confidence            3678899999997765533  44567678999999887555443332   21   111  11  11   1   4689888


Q ss_pred             EcCCCCCC--CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460        126 MNPPFGTR--NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF  171 (216)
Q Consensus       126 ~npp~~~~--~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~  171 (216)
                      -.-|-+..  .......+-...+.....+|.+......-.+++.++..
T Consensus        79 NaTpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~  126 (167)
T d1npya1          79 NVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETPFIRYAQAR  126 (167)
T ss_dssp             ECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCHHHHHHHHT
T ss_pred             eccccCCccccccccccccHhhcCCcceEEEEeeccCCCHHHHHHHHC
Confidence            66565432  11111111122233333366666655555677667654