Psyllid ID: psy17486

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT
Secondary Structure (PSIPRED)
cEEEEEEEcccccccccccEEEEccccccccccccccEEEccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccccccccEEEEcccccEccEcccccEEccHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccccccHcccccccHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHc
Coil and Loop (DISEMBL)
MVDTTVKFVTKiwhpnissvKFLTKiwhpnissvtGAICLDILKDQWAAAMTLRTVLLSLQALMaaaepddpqdAVVAKQYKENPEMFTLTARHWTNVYAGVVAKqykenpemFTLTARHwtnvyaggpsknpdfdskiqrltdmgvmsHDARVALSTYNWELERATEAIFT
Flexible Loop (DISEMBL)
MVDTTVKFvtkiwhpnissVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVyaggpsknpdfDSKIQRLTDMGVMSHDARVALstynwelerateaift
Low Complexity Region (SEG)
MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT
Disordered region (IsUnstruct)
****TVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAA*********VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGG************RLTDMGVMSHDARVALSTYNWELER*******
Disordered Region (DISOPRED)
MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG************************************KIQRLTDMGVMSHDARVALSTYNWELERATEAIFT
Disordered Region (DISEMBL)
MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT
Disordered Region (DISPRO)
MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGV************************GGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
P52486	199	Ubiquitin-conjugating enz	yes	N/A	0.813	0.703	0.584	2e-42
P61087	200	Ubiquitin-conjugating enz	yes	N/A	0.761	0.655	0.566	2e-36
P61086	200	Ubiquitin-conjugating enz	yes	N/A	0.761	0.655	0.566	2e-36
P61085	200	Ubiquitin-conjugating enz	yes	N/A	0.761	0.655	0.566	2e-36
P52484	214	Probable ubiquitin-conjug	no	N/A	0.726	0.584	0.493	2e-33
Q9FI61	192	Ubiquitin-conjugating enz	yes	N/A	0.715	0.640	0.405	1e-27
P21734	215	Ubiquitin-conjugating enz	yes	N/A	0.616	0.493	0.495	5e-23
O74810	217	Ubiquitin-conjugating enz	yes	N/A	0.494	0.391	0.552	3e-22
Q9FZ48	153	Ubiquitin-conjugating enz	no	N/A	0.465	0.522	0.555	1e-19
Q94A97	153	Ubiquitin-conjugating enz	no	N/A	0.465	0.522	0.555	2e-19

>sp|P52486|UBCD4_DROME Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2

 Score =  171 bits (433), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/171 (58%), Positives = 115/171 (67%), Gaps = 31/171 (18%)

Query: 7   KFVTKIWHP-----NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 61
           KFV +I  P     N   V+F+T+IWHPNISSVTGAICLDILKD WAAAMTLRTVLLSLQ
Sbjct: 55  KFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQ 114

Query: 62  ALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHW 121
           AL+AAAEPDDPQDAVVA Q+K+  ++F LTA+HWT                         
Sbjct: 115 ALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWT------------------------- 149

Query: 122 TNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
            N YAGGP   PD DSKIQRL DMG+  H+AR  LS  NW LE+ATE +F+
Sbjct: 150 -NAYAGGPHTFPDCDSKIQRLRDMGIDEHEARAVLSKENWNLEKATEGLFS 199

Catalyzes the covalent attachment of ubiquitin to other proteins.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|P61087|UBE2K_MOUSE Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=1 SV=3

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 105/157 (66%), Gaps = 26/157 (16%)

Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 69  NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 128

Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVA QYK+NPEMF  TAR W                           +VYAG P  +P++
Sbjct: 129 VVANQYKQNPEMFKQTARLW--------------------------AHVYAGAPVSSPEY 162

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
             KI+ L  MG   +   VALS+ +W++E ATE + +
Sbjct: 163 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 199

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro, in the presence or in the absence of BRCA1-BARD1 E3 ubiquitin-protein ligase complex, catalyzes the synthesis of 'Lys-48'-linked polyubiquitin chains. Does not transfer ubiquitin directly to but elongates monoubiquitinated substrate protein. Mediates the selective degradation of short-lived and abnormal proteins, such as the endoplasmic reticulum-associated degradation (ERAD) of misfolded lumenal proteins. Ubiquitinates huntingtin. May mediate foam cell formation by the suppression of apoptosis of lipid-bearing macrophages through ubiquitination and subsequence degradation of p53/TP53. Proposed to be involved in ubiquitination and proteolytic processing of NF-kappa-B; in vitro supports ubiquitination of NFKB1. Involved in stabilization of CASP12 during ER stress-mediated beta-amyloid neurotoxicity probably by inhibiting proteasome activity; in vitro ubiquitinates CASP12.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P61086|UBE2K_HUMAN Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 105/157 (66%), Gaps = 26/157 (16%)

Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 69  NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 128

Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVA QYK+NPEMF  TAR W                           +VYAG P  +P++
Sbjct: 129 VVANQYKQNPEMFKQTARLW--------------------------AHVYAGAPVSSPEY 162

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
             KI+ L  MG   +   VALS+ +W++E ATE + +
Sbjct: 163 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 199

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro, in the presence or in the absence of BRCA1-BARD1 E3 ubiquitin-protein ligase complex, catalyzes the synthesis of 'Lys-48'-linked polyubiquitin chains. Does not transfer ubiquitin directly to but elongates monoubiquitinated substrate protein. Mediates the selective degradation of short-lived and abnormal proteins, such as the endoplasmic reticulum-associated degradation (ERAD) of misfolded lumenal proteins. Ubiquitinates huntingtin. May mediate foam cell formation by the suppression of apoptosis of lipid-bearing macrophages through ubiquitination and subsequence degradation of p53/TP53. Proposed to be involved in ubiquitination and proteolytic processing of NF-kappa-B; in vitro supports ubiquitination of NFKB1. In case of infection by cytomegaloviruses may be involved in the US11-dependent degradation of MHC class I heavy chains following their export from the ER to the cytosol. In case of viral infections may be involved in the HPV E7 protein-dependent degradation of RB1.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P61085|UBE2K_BOVIN Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 105/157 (66%), Gaps = 26/157 (16%)

Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 69  NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 128

Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVA QYK+NPEMF  TAR W                           +VYAG P  +P++
Sbjct: 129 VVANQYKQNPEMFKQTARLW--------------------------AHVYAGAPVSSPEY 162

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
             KI+ L  MG   +   VALS+ +W++E ATE + +
Sbjct: 163 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 199

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro, in the presence or in the absence of BRCA1-BARD1 E3 ubiquitin-protein ligase complex, catalyzes the synthesis of 'Lys-48'-linked polyubiquitin chains. Does not transfer ubiquitin directly to but elongates monoubiquitinated substrate protein. Mediates the selective degradation of short-lived and abnormal proteins, such as the endoplasmic reticulum-associated degradation (ERAD) of misfolded lumenal proteins. Ubiquitinates huntingtin. May mediate foam cell formation by the suppression of apoptosis of lipid-bearing macrophages through ubiquitination and subsequence degradation of p53/TP53 (By similarity). Proposed to be involved in ubiquitination and proteolytic processing of NF-kappa-B; in vitro supports ubiquitination of NFKB1.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P52484|UBC21_CAEEL Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=3 SV=3

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/152 (49%), Positives = 95/152 (62%), Gaps = 27/152 (17%)

Query: 21  KFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ 80
           KF+T+IWHPNISS TG ICLDILKD+W A++TLRTVLLSLQA++ + EP DPQDAVVAKQ
Sbjct: 88  KFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQ 147

Query: 81  YKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSK-NPDFDSKI 139
           +               N Y             MFT TA +WT+ +A       PDF+ K+
Sbjct: 148 F--------------INNYP------------MFTATAVYWTSYFANSKKDVEPDFNRKV 181

Query: 140 QRLTDMGVMSHDARVALSTYNWELERATEAIF 171
            RL +MG+   +A V LS  NW+LE+A + IF
Sbjct: 182 GRLIEMGIRETEAIVYLSCNNWKLEQALQFIF 213

Catalyzes the covalent attachment of ubiquitin to other proteins.

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 88/153 (57%), Gaps = 30/153 (19%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           ++F TK+WHPNISS +GAICLDILKDQW+ A+TL+T L+S+QAL++A EP DPQDAVVA+
Sbjct: 69  MQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAE 128

Query: 80  QYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKI 139
           QY +N ++F  TAR+WT  +A                              K    + K+
Sbjct: 129 QYMKNYQVFVSTARYWTETFA------------------------------KKSSLEEKV 158

Query: 140 QRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
           +RL +MG      R A+ +   +   A E + +
Sbjct: 159 KRLVEMGFGDAQVRSAIESSGGDENLALEKLCS 191

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P21734|UBC1_YEAST Ubiquitin-conjugating enzyme E2 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC1 PE=1 SV=1

 Score =  107 bits (266), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 72/111 (64%), Gaps = 5/111 (4%)

Query: 7   KFVTKIWHP-----NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 61
           KFV  I  P         ++F TK++HPNISSVTGAICLDILK+ W+  +TL++ L+SLQ
Sbjct: 51  KFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQ 110

Query: 62  ALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPE 112
           AL+ + EP+DPQDA VA+ Y  + E F  TA  WT +YA   +   K N E
Sbjct: 111 ALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVE 161

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the HRD1 ubiquitin ligase complex, which is part of the ERAD-L and ERAD-M pathways responsible for the rapid degradation of soluble lumenal and membrane proteins with misfolded lumenal domains (ERAD-L), or ER-membrane proteins with misfolded transmembrane domains (ERAD-M).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|O74810|UBC1_SCHPO Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc1 PE=3 SV=2

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 62/85 (72%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           + F TKI+HPN+SS TGAICLDILKDQW+   T+++ L+SLQ+L+   EP +PQDA VA+
Sbjct: 70  MNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQ 129

Query: 80  QYKENPEMFTLTARHWTNVYAGVVA 104
            Y +N + F  TAR WT+ YA   A
Sbjct: 130 VYLQNYQQFVRTAREWTSSYAAAPA 154

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the HRD1 ubiquitin ligase complex, which is part of the ERAD-L and ERAD-M pathways responsible for the rapid degradation of soluble lumenal and membrane proteins with misfolded lumenal domains (ERAD-L), or ER-membrane proteins with misfolded transmembrane domains (ERAD-M).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9FZ48|UBC36_ARATH Ubiquitin-conjugating enzyme E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 59/81 (72%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+FLTKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP    +AK
Sbjct: 71  VRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 129

Query: 80  QYKENPEMFTLTARHWTNVYA 100
            +K N      TA+ WT +YA
Sbjct: 130 HWKSNEAEAVETAKEWTRLYA 150

Catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Required for postreplication repair of UV-damaged DNA and for adaptating root developmental programs to suboptimal availability of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q94A97|UBC35_ARATH Ubiquitin-conjugating enzyme E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 59/81 (72%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+FLTKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP    +AK
Sbjct: 71  VRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 129

Query: 80  QYKENPEMFTLTARHWTNVYA 100
            +K N      TA+ WT +YA
Sbjct: 130 HWKSNEAEAVDTAKEWTRLYA 150

Catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Required for postreplication repair of UV-damaged DNA and for adaptating root developmental programs to suboptimal availability of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
240848551	199	ubiquitin-conjugating enzyme E2-25kD-lik	0.761	0.658	0.675	6e-53
156553415	205	PREDICTED: ubiquitin-conjugating enzyme	0.761	0.639	0.668	3e-48
383853187	199	PREDICTED: ubiquitin-conjugating enzyme	0.808	0.698	0.641	9e-48
110748673	199	PREDICTED: ubiquitin-conjugating enzyme	0.808	0.698	0.635	2e-47
340715521	187	PREDICTED: ubiquitin-conjugating enzyme	0.761	0.700	0.662	3e-47
427795629	232	Putative ubiquitin-protein ligase, parti	0.761	0.564	0.668	5e-47
346465869	242	hypothetical protein [Amblyomma maculatu	0.761	0.541	0.668	6e-47
260908642	169	ubiquitin protein ligase [Rhipicephalus	0.761	0.775	0.656	1e-46
357631555	199	ubiquitin conjugating enzyme 4 [Danaus p	0.761	0.658	0.643	3e-46
189235252	199	PREDICTED: similar to ubiquitin conjugat	0.808	0.698	0.629	4e-46

>gi|240848551|ref|NP_001155723.1| ubiquitin-conjugating enzyme E2-25kD-like [Acyrthosiphon pisum] gi|239790683|dbj|BAH71888.1| ACYPI007620 [Acyrthosiphon pisum]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/157 (67%), Positives = 116/157 (73%), Gaps = 26/157 (16%)

Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA
Sbjct: 69  NPPKVRFMTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 128

Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVAKQYKE PE+F  TA HWTN                          VYAGGP+KN +F
Sbjct: 129 VVAKQYKEYPEIFAKTASHWTN--------------------------VYAGGPNKNSEF 162

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
           D+KIQRL DMG+    AR ALSTYNW+LERATE +F+
Sbjct: 163 DTKIQRLIDMGIERDQARGALSTYNWDLERATEQLFS 199

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553415|ref|XP_001599342.1| PREDICTED: ubiquitin-conjugating enzyme E2-22 kDa-like [Nasonia vitripennis]

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 105/157 (66%), Positives = 120/157 (76%), Gaps = 26/157 (16%)

Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL++AAEPDDPQDA
Sbjct: 75  NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLSAAEPDDPQDA 134

Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVAKQYKE+PEMF  TA+HWT                          +VYAGGPSK P+ 
Sbjct: 135 VVAKQYKEHPEMFRQTAKHWT--------------------------SVYAGGPSKMPEL 168

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
           D KI+RLTDMG+  H+ARVALS+YNW+LERATE +F+
Sbjct: 169 DEKIRRLTDMGIEEHNARVALSSYNWDLERATEQLFS 205

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853187|ref|XP_003702104.1| PREDICTED: ubiquitin-conjugating enzyme E2-22 kDa-like [Megachile rotundata]

 Score =  194 bits (494), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 109/170 (64%), Positives = 124/170 (72%), Gaps = 31/170 (18%)

Query: 8   FVTKIWHP-----NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 62
           FV +I  P     N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA
Sbjct: 56  FVLEIKVPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 115

Query: 63  LMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWT 122
           L++AAEPDDPQDAVVAKQYKE+PEMF  TA+HW                          T
Sbjct: 116 LLSAAEPDDPQDAVVAKQYKEHPEMFRQTAKHW--------------------------T 149

Query: 123 NVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
            VYAGGP+K PD D KI+RLTDMG+  H+ARVALS+YNW+LERATE +F+
Sbjct: 150 FVYAGGPAKMPDLDDKIRRLTDMGIEEHNARVALSSYNWDLERATEQLFS 199

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110748673|ref|XP_001120470.1| PREDICTED: ubiquitin-conjugating enzyme E2-22 kDa-like [Apis mellifera] gi|340715519|ref|XP_003396259.1| PREDICTED: ubiquitin-conjugating enzyme E2-22 kDa-like isoform 1 [Bombus terrestris] gi|350406268|ref|XP_003487714.1| PREDICTED: ubiquitin-conjugating enzyme E2-22 kDa-like [Bombus impatiens] gi|380012913|ref|XP_003690517.1| PREDICTED: ubiquitin-conjugating enzyme E2-22 kDa-like [Apis florea]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 124/170 (72%), Gaps = 31/170 (18%)

Query: 8   FVTKIWHP-----NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 62
           FV +I  P     N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA
Sbjct: 56  FVLEIKVPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 115

Query: 63  LMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWT 122
           L++AAEPDDPQDAVVA+QYKE+PEMF  TA+HWT                          
Sbjct: 116 LLSAAEPDDPQDAVVARQYKEHPEMFRQTAKHWT-------------------------- 149

Query: 123 NVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
            VYAGGP+K PD D KI+RLTDMG+  H+ARVALS+YNW+LERATE +F+
Sbjct: 150 YVYAGGPAKMPDLDDKIRRLTDMGIEEHNARVALSSYNWDLERATEQLFS 199

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715521|ref|XP_003396260.1| PREDICTED: ubiquitin-conjugating enzyme E2-22 kDa-like isoform 2 [Bombus terrestris]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/157 (66%), Positives = 119/157 (75%), Gaps = 26/157 (16%)

Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL++AAEPDDPQDA
Sbjct: 57  NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLSAAEPDDPQDA 116

Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVA+QYKE+PEMF  TA+HWT                           VYAGGP+K PD 
Sbjct: 117 VVARQYKEHPEMFRQTAKHWT--------------------------YVYAGGPAKMPDL 150

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
           D KI+RLTDMG+  H+ARVALS+YNW+LERATE +F+
Sbjct: 151 DDKIRRLTDMGIEEHNARVALSSYNWDLERATEQLFS 187

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427795629|gb|JAA63266.1| Putative ubiquitin-protein ligase, partial [Rhipicephalus pulchellus]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/157 (66%), Positives = 118/157 (75%), Gaps = 26/157 (16%)

Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 102 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 161

Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVA+Q+KENPEMF LTA+HW                            VYAGGP   PDF
Sbjct: 162 VVARQFKENPEMFKLTAQHW--------------------------AQVYAGGPKHFPDF 195

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
           D+KI+RL DMGV  H ARVALS+Y+W+LE+ATEAIF+
Sbjct: 196 DAKIKRLLDMGVEEHRARVALSSYSWDLEKATEAIFS 232

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346465869|gb|AEO32779.1| hypothetical protein [Amblyomma maculatum]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 105/157 (66%), Positives = 118/157 (75%), Gaps = 26/157 (16%)

Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 112 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 171

Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVA+Q+KENPEMF LTA+HW                            VYAGGP   PDF
Sbjct: 172 VVARQFKENPEMFKLTAQHW--------------------------AQVYAGGPKHFPDF 205

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
           D+KI+RL DMGV  H ARVALS+Y+W+LE+ATEAIF+
Sbjct: 206 DAKIKRLLDMGVEEHRARVALSSYSWDLEKATEAIFS 242

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260908642|gb|ACX54040.1| ubiquitin protein ligase [Rhipicephalus sanguineus]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/157 (65%), Positives = 116/157 (73%), Gaps = 26/157 (16%)

Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSL  L+AAAEPDDPQDA
Sbjct: 39  NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLXXLLAAAEPDDPQDA 98

Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVA+Q+KENPEMF LTA+HW                            VYAGGP   PDF
Sbjct: 99  VVARQFKENPEMFKLTAQHW--------------------------AQVYAGGPKHFPDF 132

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
           D+KI+RL DMGV  H ARVALS+Y+W+LE+ATEAIF+
Sbjct: 133 DAKIKRLLDMGVEEHRARVALSSYSWDLEKATEAIFS 169

Source: Rhipicephalus sanguineus

Species: Rhipicephalus sanguineus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357631555|gb|EHJ79025.1| ubiquitin conjugating enzyme 4 [Danaus plexippus]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 101/157 (64%), Positives = 119/157 (75%), Gaps = 26/157 (16%)

Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   ++F+TKIWHPN+SSVTGAICLDILKDQWAAA+TLRTVLLSLQAL++AAEP+DPQDA
Sbjct: 69  NPPKIRFVTKIWHPNVSSVTGAICLDILKDQWAAALTLRTVLLSLQALLSAAEPNDPQDA 128

Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVAKQYKENP++F +TARHWTN                          VYAGGP+   +F
Sbjct: 129 VVAKQYKENPQLFHMTARHWTN--------------------------VYAGGPASIVEF 162

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
           + K+QRL DMGV  HDARVALSTY+WELERATE +F+
Sbjct: 163 NQKVQRLLDMGVDEHDARVALSTYDWELERATEQLFS 199

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235252|ref|XP_971328.2| PREDICTED: similar to ubiquitin conjugating enzyme-like protein [Tribolium castaneum] gi|270004126|gb|EFA00574.1| hypothetical protein TcasGA2_TC003444 [Tribolium castaneum]

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 107/170 (62%), Positives = 121/170 (71%), Gaps = 31/170 (18%)

Query: 8   FVTKIWHP-----NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 62
           FV +I  P     N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA
Sbjct: 56  FVLEIKVPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 115

Query: 63  LMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWT 122
           L++AAEPDDPQDAVVAKQ+KEN EMF +TARHWTN                         
Sbjct: 116 LLSAAEPDDPQDAVVAKQFKENIEMFQMTARHWTN------------------------- 150

Query: 123 NVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
            VYAGGP  N + D KI+RL DMGV  H ARVALS+YNW++ERATE +F+
Sbjct: 151 -VYAGGPHVNKECDDKIKRLVDMGVEEHQARVALSSYNWDIERATEQLFS 199

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
UNIPROTKB|P61085	200	UBE2K "Ubiquitin-conjugating e	0.563	0.485	0.767	1.9e-35
UNIPROTKB|E2R6W9	200	UBE2K "Uncharacterized protein	0.563	0.485	0.767	1.9e-35
UNIPROTKB|J9NW86	200	UBE2K "Uncharacterized protein	0.563	0.485	0.767	1.9e-35
UNIPROTKB|P61086	200	UBE2K "Ubiquitin-conjugating e	0.563	0.485	0.767	1.9e-35
UNIPROTKB|Q06AB2	200	UBE2K "Uncharacterized protein	0.563	0.485	0.767	1.9e-35
MGI|MGI:1858216	200	Ube2k "ubiquitin-conjugating e	0.563	0.485	0.767	1.9e-35
RGD|1311626	186	Ube2k "ubiquitin-conjugating e	0.563	0.521	0.767	1.9e-35
ZFIN|ZDB-GENE-980605-9	200	ube2kb "ubiquitin-conjugating	0.5	0.43	0.848	2.4e-35
UNIPROTKB|F1NIP7	178	UBE2K "Uncharacterized protein	0.563	0.544	0.767	2.4e-35
UNIPROTKB|F1NNF1	187	UBE2K "Uncharacterized protein	0.563	0.518	0.767	2.4e-35

UNIPROTKB|P61085 UBE2K "Ubiquitin-conjugating enzyme E2 K" [Bos taurus (taxid:9913)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 76/99 (76%), Positives = 84/99 (84%)

Query:    16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
             N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct:    69 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 128

Query:    76 VVAKQYKENPEMFTLTARHWTNVYAG--VVAKQYKENPE 112
             VVA QYK+NPEMF  TAR W +VYAG  V + +Y +  E
Sbjct:   129 VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIE 167

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2R6W9 UBE2K "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 76/99 (76%), Positives = 84/99 (84%)

Query:    16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
             N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct:    69 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 128

Query:    76 VVAKQYKENPEMFTLTARHWTNVYAG--VVAKQYKENPE 112
             VVA QYK+NPEMF  TAR W +VYAG  V + +Y +  E
Sbjct:   129 VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIE 167

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|J9NW86 UBE2K "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 76/99 (76%), Positives = 84/99 (84%)

Query:    16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
             N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct:    69 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 128

Query:    76 VVAKQYKENPEMFTLTARHWTNVYAG--VVAKQYKENPE 112
             VVA QYK+NPEMF  TAR W +VYAG  V + +Y +  E
Sbjct:   129 VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIE 167

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|P61086 UBE2K "Ubiquitin-conjugating enzyme E2 K" [Homo sapiens (taxid:9606)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 76/99 (76%), Positives = 84/99 (84%)

Query:    16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
             N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct:    69 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 128

Query:    76 VVAKQYKENPEMFTLTARHWTNVYAG--VVAKQYKENPE 112
             VVA QYK+NPEMF  TAR W +VYAG  V + +Y +  E
Sbjct:   129 VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIE 167

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IDA

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

UNIPROTKB|Q06AB2 UBE2K "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 76/99 (76%), Positives = 84/99 (84%)

Query:    16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
             N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct:    69 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 128

Query:    76 VVAKQYKENPEMFTLTARHWTNVYAG--VVAKQYKENPE 112
             VVA QYK+NPEMF  TAR W +VYAG  V + +Y +  E
Sbjct:   129 VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIE 167

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

MGI|MGI:1858216 Ube2k "ubiquitin-conjugating enzyme E2K" [Mus musculus (taxid:10090)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 76/99 (76%), Positives = 84/99 (84%)

Query:    16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
             N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct:    69 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 128

Query:    76 VVAKQYKENPEMFTLTARHWTNVYAG--VVAKQYKENPE 112
             VVA QYK+NPEMF  TAR W +VYAG  V + +Y +  E
Sbjct:   129 VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIE 167

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;IMP

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=ISO

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

RGD|1311626 Ube2k "ubiquitin-conjugating enzyme E2K" [Rattus norvegicus (taxid:10116)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 76/99 (76%), Positives = 84/99 (84%)

Query:    16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
             N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct:    55 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 114

Query:    76 VVAKQYKENPEMFTLTARHWTNVYAG--VVAKQYKENPE 112
             VVA QYK+NPEMF  TAR W +VYAG  V + +Y +  E
Sbjct:   115 VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIE 153

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

ZFIN|ZDB-GENE-980605-9 ube2kb "ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast)" [Danio rerio (taxid:7955)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 73/86 (84%), Positives = 79/86 (91%)

Query:    16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
             N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct:    69 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 128

Query:    76 VVAKQYKENPEMFTLTARHWTNVYAG 101
             VVA QYK+NPEMF  TAR W++VYAG
Sbjct:   129 VVANQYKQNPEMFKQTARLWSHVYAG 154

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|F1NIP7 UBE2K "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 76/99 (76%), Positives = 83/99 (83%)

Query:    16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
             N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct:    47 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 106

Query:    76 VVAKQYKENPEMFTLTARHWTNVYAG--VVAKQYKENPE 112
             VVA QYK+NPEMF  TAR W +VYAG  V + +Y    E
Sbjct:   107 VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTRKIE 145

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|F1NNF1 UBE2K "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 76/99 (76%), Positives = 83/99 (83%)

Query:    16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
             N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct:    56 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 115

Query:    76 VVAKQYKENPEMFTLTARHWTNVYAG--VVAKQYKENPE 112
             VVA QYK+NPEMF  TAR W +VYAG  V + +Y    E
Sbjct:   116 VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTRKIE 154

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61087	UBE2K_MOUSE	6, ., 3, ., 2, ., 1, 9	0.5668	0.7616	0.655	yes	N/A
P61086	UBE2K_HUMAN	6, ., 3, ., 2, ., 1, 9	0.5668	0.7616	0.655	yes	N/A
P61085	UBE2K_BOVIN	6, ., 3, ., 2, ., 1, 9	0.5668	0.7616	0.655	yes	N/A
Q86K32	UBE2N_DICDI	6, ., 3, ., 2, ., 1, 9	0.5053	0.5348	0.5974	yes	N/A
P52486	UBCD4_DROME	6, ., 3, ., 2, ., 1, 9	0.5847	0.8139	0.7035	yes	N/A
Q9FI61	UBC27_ARATH	6, ., 3, ., 2, ., 1, 9	0.4052	0.7151	0.6406	yes	N/A
O74810	UBC1_SCHPO	6, ., 3, ., 2, ., 1, 9	0.5529	0.4941	0.3917	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.914
3rd Layer	6.3.2	0.921

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	172
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	4e-32
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	4e-32
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	6e-32
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	5e-30
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	8e-29
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	6e-22
cd00194	38	cd00194, UBA, Ubiquitin Associated domain	3e-04
smart00165	37	smart00165, UBA, Ubiquitin associated domain	7e-04

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  111 bits (281), Expect = 4e-32
 Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 2/79 (2%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            VKF TKI+HPN+   +G ICLDILKD+ W+ A+T+  VLLS+Q+L++   P+DP +A  
Sbjct: 62  KVKFTTKIYHPNVDP-SGEICLDILKDENWSPALTIEQVLLSIQSLLSEPNPEDPLNAEA 120

Query: 78  AKQYKENPEMFTLTARHWT 96
           AK Y++N E F    R + 
Sbjct: 121 AKLYRKNREEFEKKVREYV 139

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  111 bits (281), Expect = 4e-32
 Identities = 44/79 (55%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            V+F+TKI+HPN+    G ICL ILK   W+ A TLRTVLLSLQ+L+    P DP +A  
Sbjct: 64  KVRFVTKIYHPNVDE-NGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEA 122

Query: 78  AKQYKENPEMFTLTARHWT 96
           AK YKEN E F   AR WT
Sbjct: 123 AKLYKENREEFKKKAREWT 141

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score =  111 bits (280), Expect = 6e-32
 Identities = 46/82 (56%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+FLTKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A EPDDP D  VA 
Sbjct: 68  VRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVAD 126

Query: 80  QYKENPEMFTLTARHWTNVYAG 101
            +K N       AR W   YA 
Sbjct: 127 HFKNNRADAEKVAREWNQKYAK 148

Length = 152

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  106 bits (267), Expect = 5e-30
 Identities = 46/84 (54%), Positives = 60/84 (71%), Gaps = 2/84 (2%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            VKF+TKI+HPN+ S +G ICLDILK ++W+ A+TL TVLLSLQ+L++   PD P +A  
Sbjct: 63  KVKFITKIYHPNVDS-SGEICLDILKQEKWSPALTLETVLLSLQSLLSEPNPDSPLNADA 121

Query: 78  AKQYKENPEMFTLTARHWTNVYAG 101
           A+ YK+N E F   AR WT  YA 
Sbjct: 122 AELYKKNREEFKKKAREWTKKYAE 145

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  103 bits (259), Expect = 8e-29
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
            V+F TKI+HPN+   +G +CLDILKD+W+   TL T+LLSLQ+L+ +  PD P +   A
Sbjct: 71  KVRFTTKIFHPNVDP-SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAA 129

Query: 79  KQYKENPEMFTLTARHWTNVYA 100
             Y+E+ E +    R W   YA
Sbjct: 130 TLYREDKEEYEKKVREWVKKYA 151

Length = 153

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 86.0 bits (212), Expect = 6e-22
 Identities = 42/81 (51%), Positives = 57/81 (70%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+F TKI+HPNI+S  G+ICLDIL+DQW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 67  VQFTTKIYHPNINS-NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIAR 125

Query: 80  QYKENPEMFTLTARHWTNVYA 100
            +KEN   +  TAR WT  YA
Sbjct: 126 VFKENRSRYEATAREWTQRYA 146

Length = 147

>gnl|CDD|238116 cd00194, UBA, Ubiquitin Associated domain

 Score = 36.3 bits (85), Expect = 3e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171
           + K+++L +MG    +AR AL   N  +ERA E + 
Sbjct: 2   EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLL 37

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins. Length = 38

>gnl|CDD|197551 smart00165, UBA, Ubiquitin associated domain

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171
           + KI +L +MG    +A  AL   N  +ERA E + 
Sbjct: 2   EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL 37

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin. Length = 37

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
KOG0418|consensus	200		100.0
KOG0417|consensus	148		100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	99.98
PLN00172	147	ubiquitin conjugating enzyme; Provisional	99.97
KOG0419|consensus	152		99.97
KOG0425|consensus	171		99.96
KOG0424|consensus	158		99.96
KOG0422|consensus	153		99.95
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	99.94
KOG0420|consensus	184		99.94
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.93
KOG0421|consensus	175		99.93
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	99.93
KOG0416|consensus	189		99.92
KOG0426|consensus	165		99.91
KOG0423|consensus	223		99.86
KOG0427|consensus	161		99.6
KOG0429|consensus	258		99.36
KOG0894|consensus	244		99.17
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	98.65
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	98.6
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	98.58
KOG0895|consensus	1101		98.57
KOG0428|consensus	314		98.35
KOG0897|consensus	122		98.16
KOG0895|consensus	1101		98.11
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.0
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	97.9
KOG0896|consensus	138		97.83
KOG0011|consensus	340		97.35
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	97.23
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	97.09
KOG2391|consensus	365		96.51
KOG0417|consensus	148		96.38
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	95.78
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	95.58
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	95.06
KOG0418|consensus	200		94.64
KOG0011|consensus	340		94.43
smart00546	43	CUE Domain that may be involved in binding ubiquit	94.04
KOG0944|consensus	763		91.63
KOG2561|consensus	568		88.53
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	88.22
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	88.07
smart00591	107	RWD domain in RING finger and WD repeat containing	85.76
KOG2561|consensus	568		85.18
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	84.84
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	84.82
PRK06369	115	nac nascent polypeptide-associated complex protein	83.86
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	83.79
smart00804	63	TAP_C C-terminal domain of vertebrate Tap protein.	82.3
PF06972	60	DUF1296: Protein of unknown function (DUF1296); In	80.36
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	80.21
PF03943	51	TAP_C: TAP C-terminal domain; InterPro: IPR005637	80.07

>KOG0418|consensus

Probab=100.00  E-value=3.5e-45  Score=279.78  Aligned_cols=144  Identities=53%  Similarity=0.849  Sum_probs=137.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      |...|++ |++|||+||+|+|.|+||||||++.+|.||||||++.|++++||+++|++||++|..|+|.||.++.++++|
T Consensus        55 FeldI~i-Pe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy  133 (200)
T KOG0418|consen   55 FELDIKI-PENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQY  133 (200)
T ss_pred             EEEEEec-CCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence            5567888 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCC-CCCCchHHHHHHHHHcCCChHHHHHHHHhcC
Q psy17486         82 KENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGP-SKNPDFDSKIQRLTDMGVMSHDARVALSTYN  160 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~-~~~~~~~~kv~~l~~~gf~~~~a~~aLs~~~  160 (172)
                      .+|++.|                          .++||.||..||+++ ...+...++|+.|.+|||+++.++.+|+..+
T Consensus       134 ~~n~~~F--------------------------~~TAr~WT~~fA~~~~~~~~~~~~~v~~l~~mGf~~~~~i~~L~~~~  187 (200)
T KOG0418|consen  134 VDNYEMF--------------------------YKTARYWTTEFAGGRLPDDPWDKKKVDSLIEMGFSELEAILVLSGSD  187 (200)
T ss_pred             hhhHHHH--------------------------HHHHHHHHHHHhCCCCCCCchhHHHHHHHHHhcccHHHHHHHhhccc
Confidence            9999999                          899999999999994 4467899999999999999999999999999


Q ss_pred             CChHHHHHHhhC
Q psy17486        161 WELERATEAIFT  172 (172)
Q Consensus       161 W~~~~a~~~l~~  172 (172)
                      |+++.|.+.|++
T Consensus       188 w~~~~a~~~~~s  199 (200)
T KOG0418|consen  188 WNLADATEQLLS  199 (200)
T ss_pred             cchhhhhHhhcc
Confidence            999999999985

>KOG0417|consensus

Probab=100.00  E-value=4.3e-37  Score=228.44  Aligned_cols=98  Identities=44%  Similarity=0.764  Sum_probs=89.7

Q ss_pred             CCCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486          1 MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         1 ~~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      +|++.|.| |++||++||+|+|+|+||||||+ .+|.||||||+++|+|+++|++||++|+++|.+|++++|++.+++++
T Consensus        49 ~F~l~I~~-p~~YP~~PPkV~F~TkIyHPNI~-~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~  126 (148)
T KOG0417|consen   49 VFFLEIHF-PEDYPFKPPKVRFLTKIYHPNID-SNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAEL  126 (148)
T ss_pred             EEEEEEEC-CCCCCCCCCceEeecccccCCcC-ccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHH
Confidence            35677888 99999999999999999999999 59999999999999999999999999999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t~~~a  100 (172)
                      |+.|+++|.++||+||.+||
T Consensus       127 ~k~d~~~~~~~ARewt~kyA  146 (148)
T KOG0417|consen  127 YKTDRAKYERTAREWTRKYA  146 (148)
T ss_pred             HHhhHHHHHHHHHHHHHHHh
Confidence            99999999555555555554

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-35  Score=220.67  Aligned_cols=98  Identities=40%  Similarity=0.758  Sum_probs=93.9

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+ .+|.||||||+++|+|+++|++||++|+++|.+||+++|+|.+||++|
T Consensus        55 f~~~l~f-P~~YP~~PPkv~F~t~i~HPNV~-~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~  132 (153)
T COG5078          55 FKLTLEF-PEDYPFKPPKVRFTTKIFHPNVD-PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLY  132 (153)
T ss_pred             EEEEEEC-CCCCCCCCCeeeeccCCcCCCcC-CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHH
Confidence            5678999 99999999999999999999999 699999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~  101 (172)
                      ++|+++|.++||+|+++|+.
T Consensus       133 ~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078         133 REDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             HhCHHHHHHHHHHHHHHhcc
Confidence            99999998888888888863

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=99.98  E-value=2e-32  Score=208.24  Aligned_cols=98  Identities=47%  Similarity=0.791  Sum_probs=90.2

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+. +|.||+++|.++|+|++||++||++|+++|.+|++++|+|.+||++|
T Consensus        51 f~~~i~~-p~~YP~~pP~v~F~t~i~HPNV~~-~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~  128 (152)
T PTZ00390         51 YKLELFL-PEQYPMEPPKVRFLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHF  128 (152)
T ss_pred             EEEEEEC-ccccCCCCCEEEEecCCeeceECC-CCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence            4678888 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~  101 (172)
                      ++|++.|.++||+|+++||.
T Consensus       129 ~~d~~~f~~~a~~~~~~~a~  148 (152)
T PTZ00390        129 KNNRADAEKVAREWNQKYAK  148 (152)
T ss_pred             HHCHHHHHHHHHHHHHHHhc
Confidence            99999996666666666654

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=99.97  E-value=8.4e-32  Score=203.77  Aligned_cols=97  Identities=44%  Similarity=0.775  Sum_probs=91.7

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+. +|.||+++|.++|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus        50 f~~~i~f-p~~YP~~pP~v~f~t~i~HPNv~~-~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~  127 (147)
T PLN00172         50 FFLSILF-PPDYPFKPPKVQFTTKIYHPNINS-NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVF  127 (147)
T ss_pred             EEEEEEC-CcccCCCCCEEEEecCcccceECC-CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence            5678899 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|+++|.++||+|+++||
T Consensus       128 ~~~~~~f~~~a~~~~~~~a  146 (147)
T PLN00172        128 KENRSRYEATAREWTQRYA  146 (147)
T ss_pred             HHCHHHHHHHHHHHHHHhh
Confidence            9999999878888777775

>KOG0419|consensus

Probab=99.97  E-value=1.1e-30  Score=189.73  Aligned_cols=95  Identities=27%  Similarity=0.635  Sum_probs=90.3

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      |..++.| +++||.+||.|+|++++|||||++ +|.||||||..+|+|++++.+||.+||+||.+|++.+|.|.+||++|
T Consensus        53 FkLtl~F-teeYpnkPP~VrFvs~mFHPNvya-~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf  130 (152)
T KOG0419|consen   53 FKLTLEF-TEEYPNKPPTVRFVSKMFHPNVYA-DGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLF  130 (152)
T ss_pred             EEEEEEc-ccccCCCCCeeEeeeeccCCCcCC-CCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence            5678999 999999999999999999999996 89999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNV   98 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~   98 (172)
                      .+|+.+|.++|++-+.+
T Consensus       131 ~e~~rey~rrVk~~veq  147 (152)
T KOG0419|consen  131 SENKREYERRVKETVEQ  147 (152)
T ss_pred             hhChHHHHHHHHHHHHH
Confidence            99999999998887554

>KOG0425|consensus

Probab=99.96  E-value=3.8e-30  Score=191.95  Aligned_cols=99  Identities=26%  Similarity=0.614  Sum_probs=93.5

Q ss_pred             CCCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-------------CCcCCcCCHHHHHHHHHHhhcCC
Q psy17486          1 MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAA   67 (172)
Q Consensus         1 ~~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-------------~~W~p~~~l~~vL~~i~~ll~~p   67 (172)
                      +|++.|+| |.+||..||+++|.|+||||||+ ++|.||++||.             ++|.|..|+++||+||.+||.+|
T Consensus        54 ~FkA~m~F-P~dYP~sPP~~rF~s~mwHPNvy-~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~P  131 (171)
T KOG0425|consen   54 FFKAHMKF-PQDYPLSPPTFRFTSKMWHPNVY-EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSP  131 (171)
T ss_pred             eeEEEEeC-cccCCCCCCceeeehhhcCCCcC-CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCC
Confidence            46789999 99999999999999999999999 59999999993             57999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q psy17486         68 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        68 ~~~~p~n~~aa~~~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      |.++|+|.+||+.|++|+++|.++|++++.+...
T Consensus       132 N~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~e  165 (171)
T KOG0425|consen  132 NDESPANVDAAKEWRENPEEYKKKVRRCVRRSQE  165 (171)
T ss_pred             CCCCccchHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988653

>KOG0424|consensus

Probab=99.96  E-value=6e-30  Score=188.41  Aligned_cols=98  Identities=26%  Similarity=0.532  Sum_probs=93.5

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCC--cCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK   79 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~--W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~   79 (172)
                      ...+|.| |++||..||+++|.+++|||||++ +|.|||+||.++  |+|++||.+||++||.||.+||+.+|.+.+|+.
T Consensus        58 y~l~v~F-~~dyP~~PPkckF~~pl~HPNVyp-sgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~  135 (158)
T KOG0424|consen   58 YKLTVNF-PDDYPSSPPKCKFKPPLFHPNVYP-SGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYT  135 (158)
T ss_pred             EEEEEeC-CccCCCCCCccccCCCCcCCCcCC-CCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHH
Confidence            4578999 999999999999999999999997 999999999765  999999999999999999999999999999999


Q ss_pred             HHhhCHHHHHHHHHHHHHHHHH
Q psy17486         80 QYKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        80 ~~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      +|.+|+.+|+++||.++++||.
T Consensus       136 ~~~~~r~eYekrvr~qak~~a~  157 (158)
T KOG0424|consen  136 IYCQDRAEYEKRVRAQAKEYAK  157 (158)
T ss_pred             HHhhCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999874

>KOG0422|consensus

Probab=99.95  E-value=2.9e-28  Score=178.66  Aligned_cols=96  Identities=31%  Similarity=0.615  Sum_probs=85.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccC-CCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l-~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      +..+|.| |.+|||+||+|.|.|+|||||||. .|.||+.|+ .++|.|+.+.++||+++.+++.+|++++|++.++|..
T Consensus        51 F~l~I~f-p~eYPFKPP~i~f~tkiYHpNVDe-~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~e  128 (153)
T KOG0422|consen   51 FRLEIDF-PVEYPFKPPKIKFKTKIYHPNVDE-KGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEE  128 (153)
T ss_pred             eEEEeeC-CCCCCCCCCeeeeeeeeccCCCCC-CCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHH
Confidence            4567899 999999999999999999999995 799999999 6899999999999999999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHWTNVY   99 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t~~~   99 (172)
                      |.+|+..|.++|-+||++|
T Consensus       129 y~~d~~kF~K~Aee~tkK~  147 (153)
T KOG0422|consen  129 YIKDPKKFVKNAEEFTKKY  147 (153)
T ss_pred             HHHCHHHHHHhHHHHHHHh
Confidence            9999999933333333333

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.94  E-value=4.9e-27  Score=175.84  Aligned_cols=92  Identities=38%  Similarity=0.743  Sum_probs=81.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCC-CcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKD-QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~-~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+ .+|.||+++|.. .|+|.++|.+||.+|+++|.+|++++|+|.+|+++
T Consensus        47 f~~~i~~-p~~YP~~pP~v~f~t~i~HPni~-~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~  124 (140)
T PF00179_consen   47 FKFRISF-PPDYPFSPPKVRFLTPIFHPNID-ENGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAEL  124 (140)
T ss_dssp             EEEEEEE-TTTTTTS--EEEESSS-SBTTB--TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHH
T ss_pred             ccccccc-ccccccccccccccccccccccc-ccccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHH
Confidence            4678899 99999999999999999999999 699999999975 59999999999999999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHW   95 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~   95 (172)
                      |++|++.|.++||+|
T Consensus       125 ~~~~~~~f~~~~~~~  139 (140)
T PF00179_consen  125 YKNDREEFEKKAREW  139 (140)
T ss_dssp             HHHCHHHHHHHHHHH
T ss_pred             HHHCHHHHHHHHHHc
Confidence            999999998777776

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0420|consensus

Probab=99.94  E-value=2.4e-27  Score=179.42  Aligned_cols=94  Identities=31%  Similarity=0.555  Sum_probs=87.2

Q ss_pred             cEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHHhh
Q psy17486          4 TTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE   83 (172)
Q Consensus         4 ~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~~~   83 (172)
                      .++++ |+.||++||+|+.+|+||||||| .+|.|||+||.++|+|+.+|.+|+.+++.++.+|+++||+|.+||..+++
T Consensus        80 F~~~v-~~~Yp~~PPKVkCltkV~HPNId-~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~  157 (184)
T KOG0420|consen   80 FKFKV-PNAYPHEPPKVKCLTKVYHPNID-LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKS  157 (184)
T ss_pred             EEEEC-CCCCCCCCCeeeeeeccccCCcC-CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHh
Confidence            45666 99999999999999999999999 59999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy17486         84 NPEMFTLTARHWTNVY   99 (172)
Q Consensus        84 ~~~~f~~~ar~~t~~~   99 (172)
                      |++.|...||..-..|
T Consensus       158 n~e~F~~~Vr~~m~gg  173 (184)
T KOG0420|consen  158 NREGFENNVRRAMSGG  173 (184)
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            9999977777665544

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.93  E-value=5e-26  Score=171.41  Aligned_cols=96  Identities=48%  Similarity=0.827  Sum_probs=91.0

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      +..+|.| |++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|.+||.+|+++|.+|++++|+|.+|+++
T Consensus        48 f~~~l~~-p~~yP~~pP~v~f~~~i~Hp~i~~-~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~  125 (145)
T smart00212       48 FKLTIEF-PPDYPFKPPKVKFITKIYHPNVDS-SGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATL  125 (145)
T ss_pred             EEEEEEC-CcccCCCCCEEEEeCCceEeeECC-CCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHH
Confidence            4567888 999999999999999999999996 9999999998 899999999999999999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHWTNVY   99 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t~~~   99 (172)
                      |+++++.|.++|++++.+|
T Consensus       126 ~~~~~~~f~~~~~~~~~k~  144 (145)
T smart00212      126 YKKNREEFKKKAREWTKKY  144 (145)
T ss_pred             HHHCHHHHHHHHHHHHHHh
Confidence            9999999988888888876

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0421|consensus

Probab=99.93  E-value=1e-26  Score=171.36  Aligned_cols=89  Identities=35%  Similarity=0.658  Sum_probs=82.6

Q ss_pred             CcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHHh
Q psy17486          3 DTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYK   82 (172)
Q Consensus         3 ~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~~   82 (172)
                      ...+.| |.+||++||+|+|+|+.|||||| ..|.||||||++.|+..++++.||++||++|.+||.++|+|+.||+++.
T Consensus        79 klSl~F-p~~YPy~pP~vkFltpc~HPNVD-~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~  156 (175)
T KOG0421|consen   79 KLSLSF-PNNYPYKPPTVKFLTPCFHPNVD-LSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS  156 (175)
T ss_pred             EEEEec-CCCCCCCCCeeEeeccccCCCcc-ccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc
Confidence            357889 99999999999999999999999 5999999999999999999999999999999999999999999999998


Q ss_pred             hCHHHHHHHHHH
Q psy17486         83 ENPEMFTLTARH   94 (172)
Q Consensus        83 ~~~~~f~~~ar~   94 (172)
                       |.++|.+.+.+
T Consensus       157 -d~~eykk~l~~  167 (175)
T KOG0421|consen  157 -DQEEYKKYLEA  167 (175)
T ss_pred             -CHHHHHHHHHH
Confidence             99999544443

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=99.93  E-value=6.5e-26  Score=170.03  Aligned_cols=93  Identities=48%  Similarity=0.815  Sum_probs=87.2

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCC-cCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~-W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      +..+|.| |++||++||+|+|.|++|||||+ .+|.||+++|... |+|+++|.+||.+|+++|.+|++++|+|.+|+.+
T Consensus        48 ~~~~~~~-p~~yP~~pP~v~f~~~i~HpnV~-~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~  125 (141)
T cd00195          48 FKLDIEF-PEDYPFKPPKVRFVTKIYHPNVD-ENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKL  125 (141)
T ss_pred             EEEEEEC-CCccCCCCCeEEEeCCcccCCCC-CCCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHH
Confidence            4568888 99999999999999999999999 6999999999876 9999999999999999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHWT   96 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t   96 (172)
                      |++|++.|.++|++|+
T Consensus       126 ~~~~~~~f~~~~~~~~  141 (141)
T cd00195         126 YKENREEFKKKAREWT  141 (141)
T ss_pred             HHHCHHHHHHHHHHhC
Confidence            9999999987777763

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0416|consensus

Probab=99.92  E-value=6e-26  Score=171.55  Aligned_cols=97  Identities=27%  Similarity=0.597  Sum_probs=91.2

Q ss_pred             cEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHH-HHHhhcCCCCCChHHHHHHHHHh
Q psy17486          4 TTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVVAKQYK   82 (172)
Q Consensus         4 ~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~-i~~ll~~p~~~~p~n~~aa~~~~   82 (172)
                      .+|.. |++||++.|+|.|.|+||||||+..+|.||||.++..|+|.+.|-.|+.. |-.||..||+.||+|.+||.+|.
T Consensus        51 v~V~l-Pd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l  129 (189)
T KOG0416|consen   51 VRVEL-PDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYL  129 (189)
T ss_pred             EEEEC-CCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHh
Confidence            35555 99999999999999999999999999999999999999999999999875 57889999999999999999999


Q ss_pred             hCHHHHHHHHHHHHHHHHH
Q psy17486         83 ENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        83 ~~~~~f~~~ar~~t~~~a~  101 (172)
                      .+++.|.+++|++.++||.
T Consensus       130 ~~~~~Y~~~v~eY~~kYA~  148 (189)
T KOG0416|consen  130 RDPEEYEEKVKEYIKKYAT  148 (189)
T ss_pred             cCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999986

>KOG0426|consensus

Probab=99.91  E-value=1.3e-24  Score=158.27  Aligned_cols=97  Identities=21%  Similarity=0.489  Sum_probs=91.2

Q ss_pred             CCCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-------------CCcCCcCCHHHHHHHHHHhhcCC
Q psy17486          1 MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAA   67 (172)
Q Consensus         1 ~~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-------------~~W~p~~~l~~vL~~i~~ll~~p   67 (172)
                      |+.+++.| |.+||..||+++|...+|||||++ +|+||++||.             ++|+|..+++.||+++.+||.+|
T Consensus        53 vfpA~l~F-P~DYPLsPPkm~Ftc~~fHPNiy~-dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEP  130 (165)
T KOG0426|consen   53 VFPARLSF-PLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEP  130 (165)
T ss_pred             ccceeeec-CCCCCCCCCceeeecccccCcccC-CCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCC
Confidence            57889999 999999999999999999999996 9999999993             57999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q psy17486         68 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVY   99 (172)
Q Consensus        68 ~~~~p~n~~aa~~~~~~~~~f~~~ar~~t~~~   99 (172)
                      |-+++.|.+|+.++++++++|.+.|+..+.+.
T Consensus       131 NdESgANvdA~~mWRe~R~ef~~i~~~lvrKt  162 (165)
T KOG0426|consen  131 NDESGANVDACKMWREDREEFEKIAKRLVRKT  162 (165)
T ss_pred             CcccCcccHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            99999999999999999999988888877663

>KOG0423|consensus

Probab=99.86  E-value=2.8e-22  Score=152.08  Aligned_cols=92  Identities=30%  Similarity=0.571  Sum_probs=89.6

Q ss_pred             CCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHHhhCHHHHH
Q psy17486         10 TKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFT   89 (172)
Q Consensus        10 p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~   89 (172)
                      ..+||..||+-.|+|+||||||. .+|.||...|+..|.|.+.|+.||+.|..+|-.|+|++.+|.+++++..+++++|.
T Consensus        66 ~kDFP~sPPKgYFlTKIFHPNVa-aNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa  144 (223)
T KOG0423|consen   66 SKDFPHSPPKGYFLTKIFHPNVA-ANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYA  144 (223)
T ss_pred             cCCCCCCCCcceeeeeeccCCcc-cCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHH
Confidence            88999999999999999999998 59999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17486         90 LTARHWTNVYAGV  102 (172)
Q Consensus        90 ~~ar~~t~~~a~~  102 (172)
                      ++||-+|..|++.
T Consensus       145 ~rARl~TeIHa~p  157 (223)
T KOG0423|consen  145 RRARLYTEIHAKP  157 (223)
T ss_pred             HHHHHHHHhhcCC
Confidence            9999999999874

>KOG0427|consensus

Probab=99.60  E-value=9.4e-16  Score=111.86  Aligned_cols=68  Identities=35%  Similarity=0.663  Sum_probs=60.7

Q ss_pred             cEEEEcCCCCCCCCCeeEEeccc-ccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcC-CCCCChH
Q psy17486          4 TTVKFVTKIWHPNISSVKFLTKI-WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAA-AEPDDPQ   73 (172)
Q Consensus         4 ~~i~F~p~~YP~~pP~v~F~t~i-~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~-p~~~~p~   73 (172)
                      ..++| |+.||++.|+|.|..++ -||+|++ +|.||||||.+.|+|++++.+|+++|.+||++ ..-..|.
T Consensus        65 Lq~~F-~~~YP~esPqVmF~~~~P~HPHiYS-NGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~  134 (161)
T KOG0427|consen   65 LQVEF-PEHYPMESPQVMFVGPAPLHPHIYS-NGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT  134 (161)
T ss_pred             EEEec-CCCCCCCCCeEEEecCCCCCCceec-CCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence            46788 99999999999999988 7999996 99999999999999999999999999999986 4444444

>KOG0429|consensus

Probab=99.36  E-value=3.2e-12  Score=100.84  Aligned_cols=103  Identities=16%  Similarity=0.252  Sum_probs=91.1

Q ss_pred             cEEEEcCCCCCCC--CCeeEEecccccccccCCCCceecccCCCCcCCc-CCHHHHHHHHHHhhcCCCCCCh-H-HHHHH
Q psy17486          4 TTVKFVTKIWHPN--ISSVKFLTKIWHPNISSVTGAICLDILKDQWAAA-MTLRTVLLSLQALMAAAEPDDP-Q-DAVVA   78 (172)
Q Consensus         4 ~~i~F~p~~YP~~--pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~-~~l~~vL~~i~~ll~~p~~~~p-~-n~~aa   78 (172)
                      .+|- +|++||..  -|.|-|.+.++||.|.+.++.+|+..-..+|+-. ..|.+||..+|.++.+|+-+.+ + |.+|+
T Consensus        69 FtIl-iPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa  147 (258)
T KOG0429|consen   69 FTIL-IPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAA  147 (258)
T ss_pred             EEEE-cCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHH
Confidence            3444 49999944  4999999999999999999999999988789776 5799999999999999998777 4 99999


Q ss_pred             HHHhhCHHHHHHHHHHHHHHHHHHHHHhh
Q psy17486         79 KQYKENPEMFTLTARHWTNVYAGVVAKQY  107 (172)
Q Consensus        79 ~~~~~~~~~f~~~ar~~t~~~a~~~~~~~  107 (172)
                      .+|++++++|.++|++.++.....+.+++
T Consensus       148 ~l~~k~r~ef~~rvqe~vk~sr~~iyD~p  176 (258)
T KOG0429|consen  148 VLYKKHRDEFRERVQECVKASRSMIYDEP  176 (258)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999988776654

>KOG0894|consensus

Probab=99.17  E-value=2.3e-10  Score=90.19  Aligned_cols=95  Identities=15%  Similarity=0.226  Sum_probs=65.6

Q ss_pred             CcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccC---CCCcCCcCCHHHHHHHHHHhhcCCCC--CChHHHHH
Q psy17486          3 DTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL---KDQWAAAMTLRTVLLSLQALMAAAEP--DDPQDAVV   77 (172)
Q Consensus         3 ~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l---~~~W~p~~~l~~vL~~i~~ll~~p~~--~~p~n~~a   77 (172)
                      +-++.| |++||++||.|+++|+--   -...+-++||+|.   .+.|.|.+++++||.++.++|.+..|  -+..-.+.
T Consensus        55 hGkl~F-P~eyP~KPPaI~MiTPNG---RFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI~tS~~  130 (244)
T KOG0894|consen   55 HGKLIF-PPEYPFKPPAITMITPNG---RFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSIETSDQ  130 (244)
T ss_pred             eeEEeC-CCCCCCCCCeeEEECCCC---ceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcccccHH
Confidence            568999 999999999999999431   1123568999998   58999999999999999999998554  22211111


Q ss_pred             H--------HHHhhCHHHHHHHHHHHHHHHHH
Q psy17486         78 A--------KQYKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        78 a--------~~~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      -        ..|.-+...|.+.--+.+++|.+
T Consensus       131 ~kr~lA~~SlaFN~kn~~F~~lFPE~Vee~nq  162 (244)
T KOG0894|consen  131 DKRMLAKSSLAFNLKNPKFCELFPEVVEEYNQ  162 (244)
T ss_pred             HHHHHHHhhhhhccCChHHHHHhHHHHHHHHH
Confidence            1        12222233455556666777654

>smart00165 UBA Ubiquitin associated domain

Probab=98.65  E-value=5.9e-08  Score=56.35  Aligned_cols=36  Identities=36%  Similarity=0.496  Sum_probs=34.3

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      +++++.|++|||+++.++.||+..+||++.|++.||
T Consensus         2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        2 EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            578999999999999999999999999999999986

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>cd00194 UBA Ubiquitin Associated domain

Probab=98.60  E-value=1.1e-07  Score=55.42  Aligned_cols=37  Identities=35%  Similarity=0.529  Sum_probs=35.0

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      .+.|+.|++|||+++.++.||...+||++.|++.|++
T Consensus         2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~   38 (38)
T cd00194           2 EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE   38 (38)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            5689999999999999999999999999999999985

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=98.58  E-value=1.3e-07  Score=55.03  Aligned_cols=35  Identities=37%  Similarity=0.542  Sum_probs=32.6

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHh
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAI  170 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l  170 (172)
                      +++|+.|++|||+++.++.||...+||++.|+++|
T Consensus         3 ~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    3 EEKVQQLMEMGFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            67899999999999999999999999999999987

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>KOG0895|consensus

Probab=98.57  E-value=5.3e-08  Score=91.34  Aligned_cols=126  Identities=19%  Similarity=0.365  Sum_probs=85.8

Q ss_pred             CCCcEEEEcCCCCCCCCCeeEEecc--cccccccCCCCceecccCC-------CCcCCcCCHHHHHHHHHHhhcC--CCC
Q psy17486          1 MVDTTVKFVTKIWHPNISSVKFLTK--IWHPNISSVTGAICLDILK-------DQWAAAMTLRTVLLSLQALMAA--AEP   69 (172)
Q Consensus         1 ~~~~~i~F~p~~YP~~pP~v~F~t~--i~HPnV~~~~G~icl~~l~-------~~W~p~~~l~~vL~~i~~ll~~--p~~   69 (172)
                      +|+..|.| |++||..||.+...+.  .++||++ +.|+|||++|.       +-|+|+-++.+||.+||.|+.+  |-.
T Consensus       899 ~f~fd~~~-~~~yp~~pp~~~~~s~~~r~npnly-~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~  976 (1101)
T KOG0895|consen  899 LFFFDFQF-PQDYPSSPPLVHYHSGGVRLNPNLY-EDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYF  976 (1101)
T ss_pred             eEEEEeec-CCCCCCCCCceEeecCceeeCcccc-cccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccccccc
Confidence            46678888 9999999999998874  3789999 59999999994       5699999999999999999876  433


Q ss_pred             CChH---------HHHHHHHHhhCHHHHHHHHHHHHH-------HHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCC
Q psy17486         70 DDPQ---------DAVVAKQYKENPEMFTLTARHWTN-------VYAGVVAKQYKENPEMFTLTARHWTNVYAGGPS  130 (172)
Q Consensus        70 ~~p~---------n~~aa~~~~~~~~~f~~~ar~~t~-------~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~  130 (172)
                      ..|.         -.+-.+.|.+  ..|...++.++.       .+...+.++|....-.+.+.-+.|..-+..+..
T Consensus       977 ne~gy~~~~g~~~g~~~s~~y~~--~~~~~~~~~~~~~~~~p~~~~~e~i~~Hf~~~~~ei~~~c~a~~~~~~~~s~ 1051 (1101)
T KOG0895|consen  977 NEAGYEKQRGTAEGEKNSRVYNE--NAFLLTCKSMVYQLRKPPKCFEEVIHKHFYLRGVEIMAACEAWIAGILQGSS 1051 (1101)
T ss_pred             Ccccccccccccccccccccccc--hhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccc
Confidence            3331         1111122322  234444433333       233455666666555666667788866666653

>KOG0428|consensus

Probab=98.35  E-value=6e-07  Score=72.35  Aligned_cols=61  Identities=25%  Similarity=0.383  Sum_probs=49.3

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccC---CCCcCCcCCHHHHHHHHHHhhcC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL---KDQWAAAMTLRTVLLSLQALMAA   66 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l---~~~W~p~~~l~~vL~~i~~ll~~   66 (172)
                      .|-+|.| |.+||++||.+-.+|+.-..-   .+-+|||+|.   .+.|.|.++|+..|+.|..+|-.
T Consensus        59 YHGRI~l-PadYPmKPPs~iLLTpNGRFE---~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt  122 (314)
T KOG0428|consen   59 YHGRIVL-PADYPMKPPSIILLTPNGRFE---VNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT  122 (314)
T ss_pred             eeeeEec-CCCCCCCCCeEEEEcCCCcee---eCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence            4678999 999999999999998332222   2557999998   58899999999999998877654

>KOG0897|consensus

Probab=98.16  E-value=1.5e-06  Score=62.41  Aligned_cols=61  Identities=18%  Similarity=0.339  Sum_probs=49.8

Q ss_pred             EEEcCCCCCCCCCeeEEecccccccccCCCCceecccC-CCCcCCcCCHHHHHHHHHHhhcCC
Q psy17486          6 VKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAA   67 (172)
Q Consensus         6 i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l-~~~W~p~~~l~~vL~~i~~ll~~p   67 (172)
                      +.| +++||+.||.++-..|+-.-.---++|.||+.+| +++|+.+++++.++++|-..+..-
T Consensus        17 ~~f-~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG   78 (122)
T KOG0897|consen   17 DIF-DDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKG   78 (122)
T ss_pred             eec-ccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhcc
Confidence            456 9999999999988766544432235899999999 688999999999999998888763

>KOG0895|consensus

Probab=98.11  E-value=3.8e-06  Score=79.20  Aligned_cols=64  Identities=28%  Similarity=0.534  Sum_probs=56.1

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecc---cccccccCCCCceecccCC-------CCcCCc-CCHHHHHHHHHHhhcCC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTK---IWHPNISSVTGAICLDILK-------DQWAAA-MTLRTVLLSLQALMAAA   67 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~---i~HPnV~~~~G~icl~~l~-------~~W~p~-~~l~~vL~~i~~ll~~p   67 (172)
                      +.+.|+| |..||..||.+.++|.   -+.||.+. +|+||+++|.       +.|+|. .+|.++|.+||.++.+-
T Consensus       331 f~Fdiq~-P~~yPa~pp~v~~lt~~~~R~nPNlYn-~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e  405 (1101)
T KOG0895|consen  331 FLFDIQF-PDTYPAVPPHVKYLTGGGVRLNPNLYN-DGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE  405 (1101)
T ss_pred             eeeEeec-CCCCCCCCceeEEeeccceeecCCccc-CceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence            4566777 9999999999999986   57999995 9999999992       679999 89999999999998865

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.00  E-value=1.5e-05  Score=59.23  Aligned_cols=63  Identities=17%  Similarity=0.296  Sum_probs=54.4

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEeccc---ccccccCCCCceec---ccCCCCcCCcCCHHHHHHHHHHhhcC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKI---WHPNISSVTGAICL---DILKDQWAAAMTLRTVLLSLQALMAA   66 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i---~HPnV~~~~G~icl---~~l~~~W~p~~~l~~vL~~i~~ll~~   66 (172)
                      +..+|.| |+.||..||.+....+.   +-|+|+. +|.||+   ....+.|.|.-++.++|..+..+|.+
T Consensus        38 ~~l~l~~-p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~  106 (133)
T PF14461_consen   38 FPLRLVF-PDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED  106 (133)
T ss_pred             EEEEEEE-CCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence            3467788 99999999999877544   7899996 999999   77789999999999999999988884

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=97.90  E-value=1.3e-05  Score=69.30  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=37.5

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      +++..|+.+++|||+|++|..||+...+|.++|+|||++
T Consensus       155 ~~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~t  193 (378)
T TIGR00601       155 ERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLT  193 (378)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHh
Confidence            579999999999999999999999999999999999985

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0896|consensus

Probab=97.83  E-value=2.7e-05  Score=57.43  Aligned_cols=58  Identities=21%  Similarity=0.241  Sum_probs=49.1

Q ss_pred             EcCCCCCCCCCeeEEecccccccccCCCCceecccC--CCCcCCcCCHHHHHHHHHHhhc
Q psy17486          8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL--KDQWAAAMTLRTVLLSLQALMA   65 (172)
Q Consensus         8 F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l--~~~W~p~~~l~~vL~~i~~ll~   65 (172)
                      +|.++||..||.++|.++|--+.|++.+|.|.-..+  -.+|+-.++++.+|..++.++.
T Consensus        63 ~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~  122 (138)
T KOG0896|consen   63 ECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM  122 (138)
T ss_pred             ecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence            458999999999999999999999988888754333  4789999999999999986544

>KOG0011|consensus

Probab=97.35  E-value=0.00024  Score=59.79  Aligned_cols=39  Identities=23%  Similarity=0.387  Sum_probs=37.1

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ..+..|..+++||++++.|+.||....|+.++|+|||++
T Consensus       134 ~~e~~V~~Im~MGy~re~V~~AlRAafNNPeRAVEYLl~  172 (340)
T KOG0011|consen  134 EYEQTVQQIMEMGYDREEVERALRAAFNNPERAVEYLLN  172 (340)
T ss_pred             hhHHHHHHHHHhCccHHHHHHHHHHhhCChhhhHHHHhc
Confidence            568999999999999999999999999999999999984

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=97.23  E-value=0.00039  Score=50.93  Aligned_cols=60  Identities=17%  Similarity=0.252  Sum_probs=40.2

Q ss_pred             cEEEEcCCCCCCCCCeeEEecccc-----cccccCCCCceecccCCCCcCC-cCCHHHHHHHHHHhhcC
Q psy17486          4 TTVKFVTKIWHPNISSVKFLTKIW-----HPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALMAA   66 (172)
Q Consensus         4 ~~i~F~p~~YP~~pP~v~F~t~i~-----HPnV~~~~G~icl~~l~~~W~p-~~~l~~vL~~i~~ll~~   66 (172)
                      ..|-+ |.+||..||.+......-     +.+||+ +|+|+++.|. +|.+ ..+|.+++..++..+..
T Consensus        52 i~Iwl-p~~yP~~pP~v~v~pt~~m~I~~~~~Vd~-~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~F~~  117 (121)
T PF05743_consen   52 ICIWL-PENYPYSPPIVYVRPTPSMVIKPSHHVDS-NGRVYLPYLQ-NWNPPSSNLVDLVQELQAVFSE  117 (121)
T ss_dssp             EEEEE--TTTTTSSSEEEE-GCCTECCGGCCCB-T-TSBB-SHHHH-T--TTTS-HHHHHHHHHHCCCH
T ss_pred             EEEEE-cccCCCCCCEEEEeCCCCCCcCCCCeECC-CCCEeCchhc-cCCCCCCCHHHHHHHHHHHHhH
Confidence            34455 999999999887664222     338996 9999998885 5655 88999999998887764

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=97.09  E-value=0.0014  Score=39.15  Aligned_cols=36  Identities=36%  Similarity=0.543  Sum_probs=28.5

Q ss_pred             HHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      +++|..+++. |.+++.|+..|..++||++.|++..+
T Consensus         1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~   37 (43)
T PF14555_consen    1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYF   37 (43)
T ss_dssp             HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred             CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3567777654 88999999999999999999998765

>KOG2391|consensus

Probab=96.51  E-value=0.0066  Score=51.49  Aligned_cols=62  Identities=13%  Similarity=0.177  Sum_probs=48.1

Q ss_pred             cEEEEcCCCCCCCCCeeEEec------ccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCC
Q psy17486          4 TTVKFVTKIWHPNISSVKFLT------KIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA   67 (172)
Q Consensus         4 ~~i~F~p~~YP~~pP~v~F~t------~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p   67 (172)
                      |.+..+.+.||..||.|....      ++ |-+||+ +|.|.|+.|.++=-|..+|..++..+-+.+.++
T Consensus        71 PV~iWlldtyP~~pP~c~VnPT~~M~ik~-~~hVd~-nG~V~LPYLh~W~~pssdLv~Liq~l~a~f~~~  138 (365)
T KOG2391|consen   71 PVIIWLLDTYPYYPPICYVNPTSTMIIKV-HEHVDP-NGKVYLPYLHNWDPPSSDLVGLIQELIAAFSED  138 (365)
T ss_pred             eEEEEecccCCCCCCeEEecCCchhhhHH-hhccCC-CCeEechhhccCCCccchHHHHHHHHHHHhcCC
Confidence            345567999999999875542      44 889996 999999999764456788988888888877763

>KOG0417|consensus

Probab=96.38  E-value=0.0024  Score=48.10  Aligned_cols=20  Identities=40%  Similarity=0.687  Sum_probs=15.8

Q ss_pred             cCchhhHHHHHHHHHHhcCC
Q psy17486        109 ENPEMFTLTARHWTNVYAGG  128 (172)
Q Consensus       109 ~~~~~~~~~a~~w~~~~~~~  128 (172)
                      -+...++++||+||++||++
T Consensus       129 ~d~~~~~~~ARewt~kyA~~  148 (148)
T KOG0417|consen  129 TDRAKYERTAREWTRKYAMG  148 (148)
T ss_pred             hhHHHHHHHHHHHHHHHhcC
Confidence            34445689999999999974

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=95.78  E-value=0.031  Score=33.02  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=31.8

Q ss_pred             HHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ++.|+.|.+|  +++++.+..+|..++++++.|++.|+
T Consensus         2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL   39 (42)
T PF02845_consen    2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALL   39 (42)
T ss_dssp             HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            5678888888  88889999999999999999999987

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=95.58  E-value=0.016  Score=36.58  Aligned_cols=26  Identities=12%  Similarity=0.216  Sum_probs=20.8

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCC
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNW  161 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W  161 (172)
                      ...|++++.|||+++.++.+|+.-+-
T Consensus        10 ~~lVd~F~~mGF~~dkVvevlrrlgi   35 (55)
T PF09288_consen   10 KDLVDQFENMGFERDKVVEVLRRLGI   35 (55)
T ss_dssp             HHHHHHHHHHT--HHHHHHHHHHS--
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence            78899999999999999999998765

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=95.06  E-value=0.032  Score=48.46  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=38.2

Q ss_pred             CCchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        132 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       132 ~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      .++....|++|++|||+++.||.|--.++=|.+-|.++||.
T Consensus       334 T~eE~~AIeRL~~LGF~r~~viqaY~ACdKNEelAAn~Lf~  374 (378)
T TIGR00601       334 TPEEKEAIERLCALGFDRGLVIQAYFACDKNEELAANYLLS  374 (378)
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHh
Confidence            35678999999999999999999999999999999999983

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0418|consensus

Probab=94.64  E-value=0.09  Score=41.20  Aligned_cols=122  Identities=27%  Similarity=0.254  Sum_probs=84.4

Q ss_pred             CCcEEEEcCCCCCCCCCee------EEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSV------KFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA   75 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v------~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~   75 (172)
                      -.|+|+|.|..|+.+.+.+      ..+...|-+-+.-.+-                 .-.|+++.+-...-+|.|.+.+
T Consensus        68 ~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtv-----------------LislQalL~~pEp~dPqDavva  130 (200)
T KOG0418|consen   68 KPPKVKFITKIWHPNVSSQTGAICLDILKDQWAASLTLRTV-----------------LISLQALLCAPEPKDPQDAVVA  130 (200)
T ss_pred             CCCceeeeeeeecCCCCcccccchhhhhhcccchhhhHHHH-----------------HHHHHHHHcCCCCCChHHHHHH
Confidence            4689999999999998764      3356778776542221                 2226777888889999999999


Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHH
Q psy17486         76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARV  154 (172)
Q Consensus        76 ~aa~~~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~  154 (172)
                      +.+..-.+-...-   ||.||..||+.-   ....+.+-.+..+.-    .+|.    .....+..|..-+++...+..
T Consensus       131 ~qy~~n~~~F~~T---Ar~WT~~fA~~~---~~~~~~~~~~v~~l~----~mGf----~~~~~i~~L~~~~w~~~~a~~  195 (200)
T KOG0418|consen  131 EQYVDNYEMFYKT---ARYWTTEFAGGR---LPDDPWDKKKVDSLI----EMGF----SELEAILVLSGSDWNLADATE  195 (200)
T ss_pred             HHHhhhHHHHHHH---HHHHHHHHhCCC---CCCCchhHHHHHHHH----Hhcc----cHHHHHHHhhccccchhhhhH
Confidence            9998777777777   999999999863   222232223332222    3443    247788999999998866643

>KOG0011|consensus

Probab=94.43  E-value=0.052  Score=45.99  Aligned_cols=40  Identities=20%  Similarity=0.209  Sum_probs=37.9

Q ss_pred             CchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        133 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       133 ~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ++..+.|++|.+|||++..|+.|.=+++=|.+-|.++||+
T Consensus       296 pee~eAIeRL~alGF~ralViqayfACdKNEelAAN~Ll~  335 (340)
T KOG0011|consen  296 PEEKEAIERLEALGFPRALVIQAYFACDKNEELAANYLLS  335 (340)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHhcCccHHHHHHHHHh
Confidence            5789999999999999999999999999999999999984

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=94.04  E-value=0.2  Score=29.56  Aligned_cols=37  Identities=19%  Similarity=0.312  Sum_probs=31.6

Q ss_pred             HHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        136 DSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       136 ~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      .+.++.|.+|  +.++..+...|..++++++.|++.|+.
T Consensus         3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~   41 (43)
T smart00546        3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE   41 (43)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            4567888888  667788899999999999999999873

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>KOG0944|consensus

Probab=91.63  E-value=0.13  Score=47.49  Aligned_cols=38  Identities=29%  Similarity=0.393  Sum_probs=34.4

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      -+.-+..+++|||++++|+.||...+.++++|++-+|+
T Consensus       635 ~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~  672 (763)
T KOG0944|consen  635 DEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFS  672 (763)
T ss_pred             ChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHh
Confidence            45678889999999999999999999999999998874

>KOG2561|consensus

Probab=88.53  E-value=3.7  Score=36.64  Aligned_cols=49  Identities=22%  Similarity=0.272  Sum_probs=38.1

Q ss_pred             HHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHh
Q psy17486        122 TNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAI  170 (172)
Q Consensus       122 ~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l  170 (172)
                      ..+|+.-+...---.+.+..|++||+.++.|..+|...+.|...|++.|
T Consensus       362 r~k~~n~~~~~wvn~rs~~rL~~mGyer~la~eaL~r~~Ndi~~aldll  410 (568)
T KOG2561|consen  362 RKKYGNTPMKKWVNPRSLERLVSMGYERELAAEALRRNENDIQKALDLL  410 (568)
T ss_pred             HHHhcCCCcccccCHHHHHHHHhcchHhHHHHHHHHhccCcHHHHHHhc
Confidence            3456664433211257789999999999999999999999999999865

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=88.22  E-value=0.33  Score=33.78  Aligned_cols=24  Identities=4%  Similarity=0.023  Sum_probs=16.4

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEeccc
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKI   26 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i   26 (172)
                      +...|+| |++||..||.+...++.
T Consensus        51 ~~l~~~~-p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen   51 VTLHFTL-PPGYPESPPKISLESPK   74 (113)
T ss_dssp             EEEEEEE--SSTTSS--EEEEEEES
T ss_pred             EEEEEeC-CCcCCCcCCEEEEEcCC
Confidence            3467888 99999999999877644

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=88.07  E-value=0.72  Score=35.46  Aligned_cols=59  Identities=17%  Similarity=0.158  Sum_probs=42.9

Q ss_pred             EEEcCCCCCCCCCeeEEecccc---cccccCCC-----CceecccC-CCCcCCcCCHHHHHHHHHHhhcC
Q psy17486          6 VKFVTKIWHPNISSVKFLTKIW---HPNISSVT-----GAICLDIL-KDQWAAAMTLRTVLLSLQALMAA   66 (172)
Q Consensus         6 i~F~p~~YP~~pP~v~F~t~i~---HPnV~~~~-----G~icl~~l-~~~W~p~~~l~~vL~~i~~ll~~   66 (172)
                      |.| +..||..+|.+.+..+.|   +|++.. .     ..+|+--- -.+|.+..++..+|..|...|..
T Consensus        59 i~~-~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen   59 IVF-PPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD  126 (162)
T ss_pred             EEe-cCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence            577 889999999765554332   455553 3     57897655 35689999999999999877764

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=85.76  E-value=0.68  Score=31.90  Aligned_cols=22  Identities=14%  Similarity=0.286  Sum_probs=17.7

Q ss_pred             CcEEEEcCCCCCCCCCeeEEecc
Q psy17486          3 DTTVKFVTKIWHPNISSVKFLTK   25 (172)
Q Consensus         3 ~~~i~F~p~~YP~~pP~v~F~t~   25 (172)
                      ...|.| |++||..+|.+.+.+.
T Consensus        44 ~l~~~~-p~~YP~~~P~i~~~~~   65 (107)
T smart00591       44 TLQVKL-PENYPDEAPPISLLNS   65 (107)
T ss_pred             EEEEEC-CCCCCCCCCCeEEECC
Confidence            456777 9999999999888753

>KOG2561|consensus

Probab=85.18  E-value=1.2  Score=39.65  Aligned_cols=36  Identities=33%  Similarity=0.494  Sum_probs=33.3

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ++....+++|||-+..++.||..++.+++.|+.+|.
T Consensus       304 d~~lsllv~mGfeesdaRlaLRsc~g~Vd~AvqfI~  339 (568)
T KOG2561|consen  304 DETLSLLVGMGFEESDARLALRSCNGDVDSAVQFII  339 (568)
T ss_pred             chHHHHHHHcCCCchHHHHHHHhccccHHHHHHHHH
Confidence            677889999999999999999999999999998763

>TIGR00264 alpha-NAC-related protein

Probab=84.84  E-value=2.4  Score=30.86  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=30.0

Q ss_pred             HHHHHHHH-HcCCChHHHHHHHHhcCCChHHHHHHh
Q psy17486        136 DSKIQRLT-DMGVMSHDARVALSTYNWELERATEAI  170 (172)
Q Consensus       136 ~~kv~~l~-~~gf~~~~a~~aLs~~~W~~~~a~~~l  170 (172)
                      ++.|+.+. .-|.++..|+.||.+++||+-.|+-.|
T Consensus        79 ~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L  114 (116)
T TIGR00264        79 EDDIELVMKQCNVSKEEARRALEECGGDLAEAIMKL  114 (116)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHh
Confidence            56677764 569999999999999999999998776

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=84.82  E-value=0.86  Score=34.32  Aligned_cols=49  Identities=12%  Similarity=0.202  Sum_probs=21.7

Q ss_pred             cCCCCCCCCCeeEEeccc-ccccccCCCCceecccCC-CCc---CCcCCHHHHHH
Q psy17486          9 VTKIWHPNISSVKFLTKI-WHPNISSVTGAICLDILK-DQW---AAAMTLRTVLL   58 (172)
Q Consensus         9 ~p~~YP~~pP~v~F~t~i-~HPnV~~~~G~icl~~l~-~~W---~p~~~l~~vL~   58 (172)
                      +|..||..||.+..-.=- --.-.+ ..|+|||++.. .-|   .|.++|...|.
T Consensus        83 IP~tYP~t~pEi~lPeLdGKTaKMY-RGGkIClt~HFkPLWakN~PkfGIaHala  136 (161)
T PF08694_consen   83 IPVTYPTTAPEIALPELDGKTAKMY-RGGKICLTDHFKPLWAKNVPKFGIAHALA  136 (161)
T ss_dssp             --TTTTTS----B-GGGTTT-SSBC-CCCBB---TTHHHHHHCTTTT--HHHHHH
T ss_pred             CCccCCCCCcceeccccCCchhhhh-cCceEeeecccchhhhhcCCchhHHHHHH
Confidence            399999999988653200 001223 58999999873 224   67788877664

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=83.86  E-value=2.8  Score=30.48  Aligned_cols=36  Identities=28%  Similarity=0.341  Sum_probs=30.8

Q ss_pred             HHHHHHHH-HcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLT-DMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~-~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ++.|+.+. .-|.++..|+.||.+++||+-.|+-.|-
T Consensus        77 ~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~  113 (115)
T PRK06369         77 EEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLS  113 (115)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHh
Confidence            66677764 5699999999999999999999998774

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=83.79  E-value=0.93  Score=34.32  Aligned_cols=28  Identities=32%  Similarity=0.466  Sum_probs=22.4

Q ss_pred             HHHHhhhcCchhhHHHHHHHHHHhcCCC
Q psy17486        102 VVAKQYKENPEMFTLTARHWTNVYAGGP  129 (172)
Q Consensus       102 ~~~~~~~~~~~~~~~~a~~w~~~~~~~~  129 (172)
                      .++..++.++..|+++|++|+++||.++
T Consensus       123 ~aa~~~~~d~~~f~~~a~~~~~~~a~~~  150 (152)
T PTZ00390        123 SVADHFKNNRADAEKVAREWNQKYAKHN  150 (152)
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHhccc
Confidence            3455666777788999999999999864

>smart00804 TAP_C C-terminal domain of vertebrate Tap protein

Probab=82.30  E-value=4.8  Score=25.98  Aligned_cols=37  Identities=22%  Similarity=0.479  Sum_probs=29.5

Q ss_pred             chHHHHHHHH-HcCCChHHHHHHHHhcCCChHHHHHHh
Q psy17486        134 DFDSKIQRLT-DMGVMSHDARVALSTYNWELERATEAI  170 (172)
Q Consensus       134 ~~~~kv~~l~-~~gf~~~~a~~aLs~~~W~~~~a~~~l  170 (172)
                      ...++|..+. .-|.+..=+...|+..+||.+.|+..+
T Consensus        11 ~q~~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F   48 (63)
T smart00804       11 EQQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNF   48 (63)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4466666664 458888889999999999999999765

The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.

>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function

Probab=80.36  E-value=5.4  Score=25.51  Aligned_cols=38  Identities=13%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHc-CC-ChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDM-GV-MSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~-gf-~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ..+.|+.+.+. |- ++...-..|..++-|.++|++.||+
T Consensus         5 ~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~   44 (60)
T PF06972_consen    5 SRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLS   44 (60)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            35666666554 33 6778889999999999999999984

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=80.21  E-value=2.4  Score=38.43  Aligned_cols=36  Identities=36%  Similarity=0.421  Sum_probs=30.4

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCC-ChHHHHHHhh
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W-~~~~a~~~l~  171 (172)
                      ...|++|++|||.+..+..||-.-+. |.+.|.+-||
T Consensus       559 qs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLF  595 (749)
T COG5207         559 QSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLF  595 (749)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHH
Confidence            56799999999999999888876654 7888888876

>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1)

Probab=80.07  E-value=2.5  Score=26.08  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=24.7

Q ss_pred             HHHHH-HHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        138 KIQRL-TDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       138 kv~~l-~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      .|..+ ..-|.+..=+..-|...+||.+.|+..+.
T Consensus         3 mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~   37 (51)
T PF03943_consen    3 MVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFE   37 (51)
T ss_dssp             HHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            34444 34578888899999999999999997653

Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		2e-37
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		2e-37
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-37
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		1e-36
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		1e-32
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		5e-29
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		2e-24
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		9e-24
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		4e-23
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		1e-21
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		2e-21
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		3e-20
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		3e-20
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		3e-20
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		3e-20
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		3e-20
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		3e-18
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		1e-17
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		1e-17
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		2e-17
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		2e-17
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		2e-17
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		8e-17
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		9e-17
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		9e-17
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		1e-16
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-16
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		1e-16
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-16
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		1e-16
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-16
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		1e-16
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		1e-16
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		1e-16
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		2e-16
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		3e-16
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		4e-16
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		4e-16
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		4e-16
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		4e-16
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-16
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		1e-15
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		2e-15
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-15
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		3e-15
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		4e-15
3jvz_A	146	E2~ubiquitin-Hect Length = 146		7e-15
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		9e-15
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		2e-14
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-14
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		5e-14
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		6e-14
1jas_A	152	Hsubc2b Length = 152		2e-11
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		7e-11
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		7e-11
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		2e-10
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		2e-10
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		4e-10
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		5e-10
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		1e-09
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		2e-08
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		1e-07
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		1e-07
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		3e-07
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		3e-07
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		6e-07
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		6e-07
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		5e-06
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		1e-05
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		1e-05
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		2e-05
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		2e-05
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		3e-05
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		3e-05
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		3e-05
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		3e-05
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		6e-05
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		6e-05
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		7e-05
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		7e-05
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		7e-05
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		7e-05
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		8e-05
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		9e-05
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		2e-04
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		3e-04
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		6e-04
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		6e-04

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 105/157 (66%), Gaps = 26/157 (16%)
Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 86  NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 145
Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVA QYK+NPEMF  TAR W                           +VYAG P  +P++
Sbjct: 146 VVANQYKQNPEMFKQTARLW--------------------------AHVYAGAPVSSPEY 179
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
             KI+ L  MG   +   VALS+ +W++E ATE + +
Sbjct: 180 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 216

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 105/157 (66%), Gaps = 26/157 (16%)
Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 71  NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 130
Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVA QYK+NPEMF  TAR W                           +VYAG P  +P++
Sbjct: 131 VVANQYKQNPEMFKQTARLW--------------------------AHVYAGAPVSSPEY 164
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
             KI+ L  MG   +   VALS+ +W++E ATE + +
Sbjct: 165 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 201

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 105/157 (66%), Gaps = 26/157 (16%)
Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 70  NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 129
Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVA QYK+NPEMF  TAR W                           +VYAG P  +P++
Sbjct: 130 VVANQYKQNPEMFKQTARLW--------------------------AHVYAGAPVSSPEY 163
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
             KI+ L  MG   +   VALS+ +W++E ATE + +
Sbjct: 164 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 200

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/157 (56%), Positives = 104/157 (66%), Gaps = 26/157 (16%)
Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 122 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 181
Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
           VVA QYK+NPEMF  TAR W                           +VYAG P  +P++
Sbjct: 182 VVANQYKQNPEMFKQTARLW--------------------------AHVYAGAPVSSPEY 215
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
             KI+ L   G   +   VALS+ +W++E ATE + +
Sbjct: 216 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/86 (84%), Positives = 78/86 (90%)
Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 73  NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 132
Query: 76  VVAKQYKENPEMFTLTARHWTNVYAG 101
           VVA QYK+NPEMF  TAR W +VYAG
Sbjct: 133 VVANQYKQNPEMFKQTARLWAHVYAG 158

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score =  123 bits (309), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 86/146 (58%), Gaps = 27/146 (18%)
Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   +KF+TKIWHPNISS TGAICLD+LK++W+ A+T+RT LLS+QAL++  +PDDPQDA
Sbjct: 85  NPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDA 144
Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
            VAK YKEN  +F                            TA  WT  +A GP + P  
Sbjct: 145 EVAKMYKENHALF--------------------------VKTASVWTKTFATGPKEEPR- 177
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNW 161
           +  I+++T+MG     A+ AL   NW
Sbjct: 178 EVIIKKITEMGFSEDQAKNALIKANW 203

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 63/85 (74%)
Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N   +KF+TKIWHPNISS TGAICLDILK +W+ A+T+RT LLS+QA++A   P DPQDA
Sbjct: 107 NPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDA 166
Query: 76  VVAKQYKENPEMFTLTARHWTNVYA 100
            VAK   EN  +F  TA+ WT  +A
Sbjct: 167 EVAKMMIENHPLFVQTAKLWTETFA 191

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score =  105 bits (263), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 72/111 (64%), Gaps = 5/111 (4%)
Query: 7   KFVTKIWHP-----NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 61
           KFV  I  P         ++F TK++HPNISSVTGAICLDIL++ W+  +TL++ L+SLQ
Sbjct: 51  KFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQ 110
Query: 62  ALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPE 112
           AL+ + EP+DPQDA VA+ Y  + E F  TA  WT +YA   +   K N E
Sbjct: 111 ALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVE 161

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 7   KFVTKIWHP-----NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 61
           KFV  I  P         ++F TK++HPNISSVTGAICLDILK+ W+  +TL++ L+SLQ
Sbjct: 50  KFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQ 109
Query: 62  ALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
           AL+ + EP+DPQDA VA+ Y  + E F  TA  WT +YA
Sbjct: 110 ALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+FLTKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QAL+++ EPDDP D+ VA+
Sbjct: 67  VRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAE 125
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            +K++       AR W  +YA
Sbjct: 126 HFKQDKNDAEHVARQWNKIYA 146

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
            V+FLTKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QAL+++ EPDDP D+ VA
Sbjct: 66  KVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVA 124
Query: 79  KQYKENPEMFTLTARHWTNVYA 100
           + +K++       AR W  +YA
Sbjct: 125 EHFKQDKNDAEHVARQWNKIYA 146

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+F+TKI+HPN+  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP    VA+
Sbjct: 71  VRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 129
Query: 80  QYKENPEMFTLTARHWTNVYA 100
           Q+K N      TAR WT +YA
Sbjct: 130 QWKTNEAQAIETARAWTRLYA 150

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+F+TKI+HPN+  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP    VA+
Sbjct: 74  VRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 132
Query: 80  QYKENPEMFTLTARHWTNVYA 100
           Q+K N      TAR WT +YA
Sbjct: 133 QWKTNEAQAIETARAWTRLYA 153

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+F+TKI+HPN+  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP    VA+
Sbjct: 67  VRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 125
Query: 80  QYKENPEMFTLTARHWTNVYA 100
           Q+K N      TAR WT +YA
Sbjct: 126 QWKTNEAQAIETARAWTRLYA 146

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+F+TKI+HPN+  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP    VA+
Sbjct: 72  VRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 130
Query: 80  QYKENPEMFTLTARHWTNVYA 100
           Q+K N      TAR WT +YA
Sbjct: 131 QWKTNEAQAIETARAWTRLYA 151

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+F+TKI+HPN+  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP    VA+
Sbjct: 69  VRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
           Q+K N      TAR WT +YA
Sbjct: 128 QWKTNEAQAIETARAWTRLYA 148

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F+TK++HPNI+   G ICLDILKDQW+ A+TL  VLLS+ +L+    P DP D  VA 
Sbjct: 70  VTFMTKVYHPNINK-NGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVAN 128
Query: 80  QYKENPEMFTLTARHWTNVYA 100
             + N + F  TAR WT +YA
Sbjct: 129 VLRANKKQFEDTAREWTRMYA 149

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+DQW+ A+T+  VLLS+ +L+    PDDP    +A 
Sbjct: 67  VNFTTRIYHPNINS-NGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAH 125
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK +   + L+AR WT  YA
Sbjct: 126 VYKTDRSRYELSAREWTRKYA 146

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F TKI+HPNI+S  GAICLDILKDQW+ A+T+  VLLS+ +L+    PDDP    +A 
Sbjct: 87  VNFTTKIYHPNINS-QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAH 145
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK +   +  TAR W+  YA
Sbjct: 146 LYKSDRMRYDQTAREWSQKYA 166

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+FLTKI+HPNI  + G ICLD+LK  W+ A+ +RTVLLS+QAL+A+  P+DP    VA+
Sbjct: 71  VRFLTKIYHPNIDRL-GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 129
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            + +N +     AR WT +YA
Sbjct: 130 DWIKNEQGAKAKAREWTKLYA 150

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+FLTKI+HPNI  + G ICLD+LK  W+ A+ +RTVLLS+QAL+A+  P+DP    VA+
Sbjct: 69  VRFLTKIYHPNIDRL-GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            + +N +     AR WT +YA
Sbjct: 128 DWIKNEQGAKAKAREWTKLYA 148

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           + F TKI+HPNI++  G ICLDILKDQW+ A+TL  VLLS+ +L+  A PDDP    +A 
Sbjct: 68  ISFTTKIYHPNINA-NGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAH 126
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK +   +  TAR WT  YA
Sbjct: 127 IYKTDRPKYEATAREWTKKYA 147

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 85  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 143
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 144 IYKTDREKYNRIAREWTQKYA 164

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 69  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 128 IYKTDREKYNRIAREWTQKYA 148

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 72  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 130
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 131 IYKTDREKYNRIAREWTQKYA 151

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 67  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 125
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 126 IYKTDREKYNRIAREWTQKYA 146

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW  A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 69  VAFTTRIYHPNINS-NGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 128 IYKTDREKYNRIAREWTQKYA 148

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 69  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 128 IYKTDREKYNRIAREWTQKYA 148

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 69  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 128 IYKTDREKYNRIAREWTQKYA 148

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 70  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 128
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 129 IYKTDRERYNQLAREWTQKYA 149

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           + F TKI+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 85  IAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQ 143
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 144 IYKSDKEKYNRHAREWTQKYA 164

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           + F TKI+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 73  IAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQ 131
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 132 IYKSDKEKYNRHAREWTQKYA 152

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           + F TKI+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 69  IAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQ 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 128 IYKSDKEKYNRHAREWTQKYA 148

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F TKI+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A 
Sbjct: 72  VAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAH 130
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 131 IYKSDKEKYNRLAREWTQKYA 151

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 77  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 135
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            Y+ + E +   AR WT  YA
Sbjct: 136 IYQTDREKYNRIAREWTQKYA 156

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+FLTKI+HPNI  + G I LD+LK  W+ A+ +RTVLLS+QAL+A+  P+DP    VA+
Sbjct: 69  VRFLTKIYHPNIDRL-GRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            + +N +     AR WT +YA
Sbjct: 128 DWIKNEQGAKAKAREWTKLYA 148

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 75  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 133
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + + +   +R WT  YA
Sbjct: 134 IYKTDRDKYNRISREWTQKYA 154

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 69  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + + +   +R WT  YA
Sbjct: 128 IYKTDRDKYNRISREWTQKYA 148

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 77  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 135
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + + +   +R WT  YA
Sbjct: 136 IYKTDRDKYNRISREWTQKYA 156

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 66  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 124
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + + +   +R WT  YA
Sbjct: 125 IYKTDRDKYNRISREWTQKYA 145

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLD L+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 69  VAFTTRIYHPNINS-NGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 128 IYKTDREKYNRIAREWTQKYA 148

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 69  VAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 128 IYKTDREKYNRIAREWTQKYA 148

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 70  VAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 128
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 129 IYKTDREKYNRIAREWTQKYA 149

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 85  VAFTTRIYHPNINS-NGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 143
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 144 IYKTDREKYNRIAREWTQKYA 164

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+FLTKI+HP I  + G I LD+LK  W+ A+ +RTVLLS+QAL+A+  P+DP    VA+
Sbjct: 69  VRFLTKIYHPAIDRL-GRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            + +N +     AR WT +YA
Sbjct: 128 DWIKNEQGAKAKAREWTKLYA 148

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           + F TKI+HPNI+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 73  IAFTTKIYHPNINS-NGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQ 131
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 132 IYKSDKEKYNRHAREWTQKYA 152

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+I LDIL+ QW+ A+ +  VLLS+ +L+    PDDP    +A+
Sbjct: 66  VAFTTRIYHPNINS-NGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIAR 124
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 125 IYKTDREKYNRIAREWTQKYA 145

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 67  VAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 125
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + + +   +R WT  YA
Sbjct: 126 IYKTDRDKYNRISREWTQKYA 146

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HP I+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 67  VAFTTRIYHPAINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 125
Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 126 IYKTDREKYNRIAREWTQKYA 146

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+H NI+S  G ICLDILKD W+ A+T+  VLLS+ +L+    P DP    +A 
Sbjct: 114 VTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT 172
Query: 80  QYKENPEMFTLTARHWTNVYA 100
           QY  N       AR WT  YA
Sbjct: 173 QYMTNRAEHDRMARQWTKRYA 193

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+H NI+S  G ICLDILKD W+ A+T+  VLLS+ +L+    P DP    +A 
Sbjct: 69  VTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT 127
Query: 80  QYKENPEMFTLTARHWTNVYA 100
           QY  N       AR WT  YA
Sbjct: 128 QYMTNRAEHDRMARQWTKRYA 148

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 19  SVKFLTKIWHPNISSVTGAICLDILK----DQWAAAMTLRTVLLSLQALMAAAEPDDPQD 74
            ++FLT I+HPNI S  G ICLD+LK      W  ++ + TVL S+Q LM+   PDDP  
Sbjct: 69  QIRFLTPIYHPNIDSA-GRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLM 127
Query: 75  AVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMF 114
           A ++ ++K N   F   AR WT  +A    KQ  +  EM 
Sbjct: 128 ADISSEFKYNKPAFLKNARQWTEKHAR--QKQKADEEEML 165

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 3   DTTVKFVTKI--WHPN-ISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS 59
           D T K V +    +PN   +V+FL+K++HPN+ +  G+ICLDIL+++W+    + ++L S
Sbjct: 50  DGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYA-DGSICLDILQNRWSPTYDVSSILTS 108
Query: 60  LQALMAAAEPDDPQDAVVAKQYKEN 84
           +Q+L+    P+ P ++  A+ Y+EN
Sbjct: 109 IQSLLDEPNPNSPANSQAAQLYQEN 133

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 14  HPN-ISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP 72
           +PN   +VKF++K++HPN+ +  G+ICLDIL+++W+    +  +L S+Q+L+    P+ P
Sbjct: 66  YPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSP 124
Query: 73  QDAVVAKQYKEN 84
            +++ A+ Y+EN
Sbjct: 125 ANSLAAQLYQEN 136

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 14  HPN-ISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP 72
           +PN   +VKF++K++HPN+ +  G+ICLDIL+++W+    +  +L S+Q+L+    P+ P
Sbjct: 63  YPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSP 121
Query: 73  QDAVVAKQYKEN 84
            +++ A+ Y+EN
Sbjct: 122 ANSLAAQLYQEN 133

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
           VKF T  WHPN+   +G ICLDILK+ W A+  +RT+LLSLQ+L+       P +A  A
Sbjct: 75  VKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAA 132

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 16  NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           N  +VKFLT  +HPN+ +  G I LDILK++W+A   +RT+LLS+Q+L+     D P + 
Sbjct: 92  NAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNT 150
Query: 76  VVAKQYKENPEMF 88
             A+ +K NP  F
Sbjct: 151 HAAELWK-NPTAF 162

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
           +V+F+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+L+    P+ P ++  A
Sbjct: 69  TVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 127
Query: 79  KQYKENPEMFTLTAR 93
           + Y E+   +    R
Sbjct: 128 RMYSESKREYNRRVR 142

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVV 77
           S+ F+ KI+HPNI   +G +CLD++   W A   L  +  S L  L+A   P DP +   
Sbjct: 86  SIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDA 145
Query: 78  AKQYKENPEMFTLTARHWTNVYA 100
           A  Y   PE +    + +   YA
Sbjct: 146 AAMYLHRPEEYKQKIKEYIQKYA 168

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 22  FLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81
           FLTKI+HPN+ +  G IC+++LK  W A + +R VLL+++ L+    P+   +    +  
Sbjct: 81  FLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLL 139
Query: 82  KENPEMFTLTARHWTNVYA 100
            EN E +   AR  T ++ 
Sbjct: 140 LENYEEYAARARLLTEIHG 158

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           VK  T ++HPNI  + G +CL+IL++ W   +T+ +++  LQ L     P+DP +   A+
Sbjct: 70  VKCETXVYHPNID-LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 128
Query: 80  QYKENPEMFTLTARHWTNVYAGVVAKQYKE 109
             + N  +F    +   +   G +   Y E
Sbjct: 129 VLQNNRRLFEQNVQR--SXRGGYIGSTYFE 156

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           VKFL++++HPN+ +  G ICLDIL+++W     + ++L S+Q+L     P  P +   A 
Sbjct: 70  VKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAAT 128
Query: 80  QYKEN 84
            +K++
Sbjct: 129 LFKDH 133

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 23  LTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYK 82
           L KI+HPNI  + G +CL+IL++ W+ A+ L++++  L  L     P+DP +   AK   
Sbjct: 102 LKKIFHPNID-LKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLC 160
Query: 83  ENPEMFTLTAR 93
           E  + F    R
Sbjct: 161 EGEKEFAEAVR 171

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 19  SVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            + F TKI+HPNI    G +CL ++  + W  A     V+ SL AL+   +P+ P  A +
Sbjct: 69  KITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADL 127
Query: 78  AKQYKENPEMFTLTARHWTNVYA 100
           A++Y ++ + F   A  +T  Y 
Sbjct: 128 AEEYSKDRKKFCKNAEEFTKKYG 150

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 19  SVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            + F TKI+HPNI    G +CL ++  + W  A     V+ SL AL+   +P+ P  A +
Sbjct: 67  KITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADL 125
Query: 78  AKQYKENPEMFTLTARHWTNVYA 100
           A++Y ++ + F   A  +T  Y 
Sbjct: 126 AEEYSKDRKKFCKNAEEFTKKYG 148

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           VK  T ++HPNI  + G + L+IL++ W   +T+ +++  LQ L     P+DP +   A+
Sbjct: 90  VKCETMVYHPNID-LEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 148
Query: 80  QYKENPEMFTLTARHWTNVYAGVVAKQYKE 109
             + N  +F    +   ++  G +   Y E
Sbjct: 149 VLQNNRRLFEQNVQR--SMRGGYIGSTYFE 176

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPDDPQDAVV 77
           S+ F+ K+ HPN+   +G++CLD++   W    +L  V  + L  L+    P DP ++  
Sbjct: 64  SIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDA 123
Query: 78  AKQYKENPEMFTLTARHWTNVYA 100
           A    ++  ++    + +  +YA
Sbjct: 124 ASLLMKDKNIYEEKVKEYVKLYA 146

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 14/78 (17%)
Query: 20  VKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAA 66
           +KF+T+IWHPN+    G +C+ IL             +++W    T+ T+++S+ +++A 
Sbjct: 84  MKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 142
Query: 67  AEPDDPQDAVVAKQYKEN 84
              D P +   AK+++E+
Sbjct: 143 PNGDSPANVDAAKEWRED 160

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 20  VKFLTKIWHPNISSVTGAICLDIL-KDQ-WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
           VKF    +HPN+   +G ICL IL +DQ W  A+TL+ ++L +Q L+ +  P+ P     
Sbjct: 77  VKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPA 135
Query: 78  AKQYKEN 84
            + +  N
Sbjct: 136 WRSFSRN 142

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 20  VKFLTKIWHPNISSVTGAICLDIL-KDQ-WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
           VKF    +HPN+   +G ICL IL +DQ W  A+TL+ ++L +Q L+ +  P+ P     
Sbjct: 75  VKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPA 133
Query: 78  AKQYKEN 84
            + +  N
Sbjct: 134 WRSFSRN 140

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 22/107 (20%)
Query: 1   MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQ------WAAAMTLR 54
           MV   VK +TKIWHPNI+                TG ICL +L++       WA   TL+
Sbjct: 75  MVPPKVKCLTKIWHPNITE---------------TGEICLSLLREHSIDGTGWAPTRTLK 119
Query: 55  TVLLSLQALMA-AAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
            V+  L +L       DDP +   A+ +  + E F      +   YA
Sbjct: 120 DVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 22/107 (20%)
Query: 1   MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQ------WAAAMTLR 54
           MV   VK +TKIWHPNI+                TG ICL +L++       WA   TL+
Sbjct: 75  MVPPKVKCLTKIWHPNITE---------------TGEICLSLLREHSIDGTGWAPTRTLK 119
Query: 55  TVLLSLQALMA-AAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
            V+  L +L       DDP +   A+ +  + E F      +   YA
Sbjct: 120 DVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKD-------------QWAAAMTLRTVLLSLQALMAA 66
           +KF+++IWHPNI    G +C+ IL D             +W    T+ T+LLS+ +++  
Sbjct: 70  MKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTD 128
Query: 67  AEPDDPQDAVVAKQYKEN 84
              + P +   AK  +EN
Sbjct: 129 PNFESPANVDAAKMQREN 146

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
           VKF+T  +HPN+   TG  C+D L   ++W    TL ++LL+LQ +++    ++P +   
Sbjct: 89  VKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEA 148
Query: 78  AK 79
           A+
Sbjct: 149 AR 150

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            KF   ++HPN++  +G +CL IL++   W  A+T++ +LL +Q L+      DP  A  
Sbjct: 78  CKFEPPLFHPNVAP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 136
Query: 78  AKQYKEN 84
              Y +N
Sbjct: 137 YTIYCQN 143

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPDDPQDAVV 77
           S+ F  +I HPN+   +G++CLD++   W     L  +  + L  L+    P DP +   
Sbjct: 73  SIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQA 132
Query: 78  A 78
           A
Sbjct: 133 A 133

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L+      DP  A  
Sbjct: 78  CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 136
Query: 78  AKQYKEN 84
              Y +N
Sbjct: 137 YTIYCQN 143

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L+      DP  A  
Sbjct: 77  CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 135
Query: 78  AKQYKEN 84
              Y +N
Sbjct: 136 YTIYCQN 142

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L+      DP  A  
Sbjct: 76  CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 134
Query: 78  AKQYKEN 84
              Y +N
Sbjct: 135 YTIYCQN 141

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L+      DP  A  
Sbjct: 77  CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 135
Query: 78  AKQYKEN 84
              Y +N
Sbjct: 136 YTIYCQN 142

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L+      DP  A  
Sbjct: 80  CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 138
Query: 78  AKQYKEN 84
              Y +N
Sbjct: 139 YTIYCQN 145

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L+      DP  A  
Sbjct: 75  CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133
Query: 78  AKQYKEN 84
              Y +N
Sbjct: 134 YTIYCQN 140

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 17/82 (20%)
Query: 19  SVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMA 65
           + +FLTK+WHPNI   TG +C+ IL              ++W     +RT+LLS+ +L+ 
Sbjct: 70  AFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLN 128
Query: 66  AAEPDDPQD---AVVAKQYKEN 84
                 P +   +V+ +++KE+
Sbjct: 129 EPNTFSPANVDASVMYRKWKES 150

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 17/82 (20%)
Query: 19  SVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMA 65
           + +FLTK+WHPNI   TG +C+ IL              ++W     +RT+LLS+ +L+ 
Sbjct: 73  AFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLN 131
Query: 66  AAEPDDPQD---AVVAKQYKEN 84
                 P +   +V+ +++KE+
Sbjct: 132 EPNTFSPANVDASVMYRKWKES 153

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            +F   ++HPN+   +G +CL IL ++  W  A+T++ +LL +Q L+     DDP  A  
Sbjct: 81  CRFTPPLFHPNVYP-SGTVCLSILNEEEGWKPAITIKQILLGIQDLL-----DDPNIASP 134
Query: 78  AKQYKENPEMFTLTARHWTNVYAGVVAKQYKEN 110
           A+      E +T+  +     Y   V  Q +EN
Sbjct: 135 AQT-----EAYTMFKKDKVE-YEKRVRAQAREN 161

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            KF   ++HP +   +G +CL IL++   W  A+T++ +LL +Q L+      DP  A  
Sbjct: 78  CKFEPPLFHPQVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 136
Query: 78  AKQYKEN 84
              Y +N
Sbjct: 137 YTIYCQN 143

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 6   VKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALM 64
           +KF TKI+HPN+                  G ICL I+  + W        VL +L  L+
Sbjct: 70  IKFTTKIYHPNVDE---------------NGQICLPIISSENWKPCTKTCQVLEALNVLV 114
Query: 65  AAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 96
                 +P    +A    +NPE+F   A  +T
Sbjct: 115 NRPNIREPLRMDLADLLTQNPELFRKNAEEFT 146

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 6   VKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALM 64
           +KF TKI+HPN+                  G ICL I+  + W        VL +L  L+
Sbjct: 67  IKFTTKIYHPNVDE---------------NGQICLPIISSENWKPCTKTCQVLEALNVLV 111
Query: 65  AAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 96
                 +P    +A    +NPE+F   A  +T
Sbjct: 112 NRPNIREPLRMDLADLLTQNPELFRKNAEEFT 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	7e-59
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	3e-57
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	2e-54
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	2e-49
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	6e-46
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	5e-44
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	1e-43
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	8e-43
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	2e-42
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	4e-42
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	7e-42
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	2e-41
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	3e-41
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	5e-41
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	5e-41
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	6e-41
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	1e-40
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	2e-40
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	8e-40
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	9e-37
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	1e-36
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	1e-36
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	2e-35
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-35
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	6e-35
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	2e-34
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	2e-34
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	9e-34
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	6e-33
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	3e-31
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	7e-31
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	1e-30
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	2e-30
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	4e-29
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	7e-29
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	2e-28
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	3e-28
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	1e-27
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	2e-26
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	8e-24
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	4e-23
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	1e-22
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	2e-22
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	2e-21
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	8e-21
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	1e-20
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	5e-20
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	8e-20
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	2e-18
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	2e-15

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  181 bits (461), Expect = 7e-59
 Identities = 88/153 (57%), Positives = 104/153 (67%), Gaps = 26/153 (16%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA    
Sbjct: 74  VRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA---- 129

Query: 80  QYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKI 139
                                 VVA QYK+NPEMF  TAR W +VYAG P  +P++  KI
Sbjct: 130 ----------------------VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKI 167

Query: 140 QRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
           + L  MG   +   VALS+ +W++E ATE + +
Sbjct: 168 ENLCAMGFDRNAVIVALSSKSWDVETATELLLS 200

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  178 bits (454), Expect = 3e-57
 Identities = 87/153 (56%), Positives = 103/153 (67%), Gaps = 26/153 (16%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA    
Sbjct: 126 VRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA---- 181

Query: 80  QYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKI 139
                                 VVA QYK+NPEMF  TAR W +VYAG P  +P++  KI
Sbjct: 182 ----------------------VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKI 219

Query: 140 QRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
           + L   G   +   VALS+ +W++E ATE + +
Sbjct: 220 ENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  170 bits (432), Expect = 2e-54
 Identities = 63/152 (41%), Positives = 84/152 (55%), Gaps = 27/152 (17%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           +KF+TKIWHPNISS TGAICLD+LK++W+ A+T+RT LLS+QAL++  +PDDPQDA VAK
Sbjct: 89  IKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAK 148

Query: 80  QYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKI 139
            YKEN  +F  TA  WT  +A                              K    +  I
Sbjct: 149 MYKENHALFVKTASVWTKTFA---------------------------TGPKEEPREVII 181

Query: 140 QRLTDMGVMSHDARVALSTYNWELERATEAIF 171
           +++T+MG     A+ AL   NW    A   + 
Sbjct: 182 KKITEMGFSEDQAKNALIKANWNETLALNTLL 213

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  158 bits (400), Expect = 2e-49
 Identities = 52/151 (34%), Positives = 72/151 (47%), Gaps = 15/151 (9%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           ++F TK++HPNISSVTGAICLDIL++ W+  +TL++ L+SLQAL+ + EP+DPQDA VA+
Sbjct: 69  MQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQ 128

Query: 80  QYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKI 139
            Y  + E F  TA  WT +YA   +   K N E                          I
Sbjct: 129 HYLRDRESFNKTAALWTRLYASETSNGQKGNVEE---------------SDLYGIDHDLI 173

Query: 140 QRLTDMGVMSHDARVALSTYNWELERATEAI 170
                 G         L     +     +  
Sbjct: 174 DEFESQGFEKDKIVEVLRRLGVKSLDPNDNN 204

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  147 bits (372), Expect = 6e-46
 Identities = 72/82 (87%), Positives = 77/82 (93%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDAVVA 
Sbjct: 77  VRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAN 136

Query: 80  QYKENPEMFTLTARHWTNVYAG 101
           QYK+NPEMF  TAR W +VYAG
Sbjct: 137 QYKQNPEMFKQTARLWAHVYAG 158

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  143 bits (362), Expect = 5e-44
 Identities = 50/81 (61%), Positives = 62/81 (76%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           +KF+TKIWHPNISS TGAICLDILK +W+ A+T+RT LLS+QA++A   P DPQDA VAK
Sbjct: 111 MKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAK 170

Query: 80  QYKENPEMFTLTARHWTNVYA 100
              EN  +F  TA+ WT  +A
Sbjct: 171 MMIENHPLFVQTAKLWTETFA 191

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  140 bits (356), Expect = 1e-43
 Identities = 47/81 (58%), Positives = 63/81 (77%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           ++F TK++HPNISSVTGAICLDILK+ W+  +TL++ L+SLQAL+ + EP+DPQDA VA+
Sbjct: 68  MQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQ 127

Query: 80  QYKENPEMFTLTARHWTNVYA 100
            Y  + E F  TA  WT +YA
Sbjct: 128 HYLRDRESFNKTAALWTRLYA 148

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  138 bits (350), Expect = 8e-43
 Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+FLTKI+HPNI    G ICLDILKD+W+ A+ +RTVLLS+QAL+++ EPDDP D+ VA+
Sbjct: 67  VRFLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAE 125

Query: 80  QYKENPEMFTLTARHWTNVYA 100
            +K++       AR W  +YA
Sbjct: 126 HFKQDKNDAEHVARQWNKIYA 146

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  137 bits (348), Expect = 2e-42
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPDDPQDAVV 77
           S+ F+ K+ HPN+   +G++CLD++   W    +L  V  + L  L+    P DP ++  
Sbjct: 64  SIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDA 123

Query: 78  AKQYKENPEMFTLTARHWTNVYA 100
           A    ++  ++    + +  +YA
Sbjct: 124 ASLLMKDKNIYEEKVKEYVKLYA 146

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  137 bits (346), Expect = 4e-42
 Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+FLTKI+HPNI    G ICLD+LK  W+ A+ +RTVLLS+QAL+A+  P+DP    VA+
Sbjct: 71  VRFLTKIYHPNIDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 129

Query: 80  QYKENPEMFTLTARHWTNVYA 100
            + +N +     AR WT +YA
Sbjct: 130 DWIKNEQGAKAKAREWTKLYA 150

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  136 bits (345), Expect = 7e-42
 Identities = 45/81 (55%), Positives = 59/81 (72%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+F+TKI+HPN+    G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP    VA+
Sbjct: 71  VRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 129

Query: 80  QYKENPEMFTLTARHWTNVYA 100
           Q+K N      TAR WT +YA
Sbjct: 130 QWKTNEAQAIETARAWTRLYA 150

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  135 bits (343), Expect = 2e-41
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPDDPQDAVV 77
           S+ F  +I HPN+   +G++CLD++   W     L  +  + L  L+    P DP +   
Sbjct: 73  SIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQA 132

Query: 78  AKQYKENPEMFTLTARHWTNVYA 100
           A     +   F    R   + +A
Sbjct: 133 AHLLHADRVGFDALLREHVSTHA 155

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  135 bits (342), Expect = 3e-41
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVV 77
           S+ F+ KI+HPNI   +G +CLD++   W A   L  +  S L  L+A   P DP +   
Sbjct: 86  SIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDA 145

Query: 78  AKQYKENPEMFTLTARHWTNVYA 100
           A  Y   PE +    + +   YA
Sbjct: 146 AAMYLHRPEEYKQKIKEYIQKYA 168

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  134 bits (339), Expect = 5e-41
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
             FLTKI+HPN+ +  G IC+++LK  W A + +R VLL+++ L+    P+   +    +
Sbjct: 79  GYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGR 137

Query: 80  QYKENPEMFTLTARHWTNVYA 100
              EN E +   AR  T ++ 
Sbjct: 138 LLLENYEEYAARARLLTEIHG 158

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  134 bits (340), Expect = 5e-41
 Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F TKI+HPNI+S  GAICLDILKDQW+ A+T+  VLLS+ +L+    PDDP    +A 
Sbjct: 87  VNFTTKIYHPNINS-QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAH 145

Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK +   +  TAR W+  YA
Sbjct: 146 LYKSDRMRYDQTAREWSQKYA 166

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  134 bits (339), Expect = 6e-41
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 70  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 128

Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 129 IYKTDRERYNQLAREWTQKYA 149

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  133 bits (338), Expect = 1e-40
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 85  VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 143

Query: 80  QYKENPEMFTLTARHWTNVYA 100
            YK + E +   AR WT  YA
Sbjct: 144 IYKTDREKYNRIAREWTQKYA 164

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  134 bits (339), Expect = 2e-40
 Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+H NI+S  G ICLDILKD W+ A+T+  VLLS+ +L+    P DP    +A 
Sbjct: 114 VTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT 172

Query: 80  QYKENPEMFTLTARHWTNVYA 100
           QY  N       AR WT  YA
Sbjct: 173 QYMTNRAEHDRMARQWTKRYA 193

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  131 bits (332), Expect = 8e-40
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 5/86 (5%)

Query: 20  VKFLTKIWHPNISSVTGAICLDIL----KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
           ++FLT I+HPNI S  G ICLD+L    K  W  ++ + TVL S+Q LM+   PDDP  A
Sbjct: 70  IRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMA 128

Query: 76  VVAKQYKENPEMFTLTARHWTNVYAG 101
            ++ ++K N   F   AR WT  +A 
Sbjct: 129 DISSEFKYNKPAFLKNARQWTEKHAR 154

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  123 bits (311), Expect = 9e-37
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
           + F TKI+HPNI    G +CL ++  + W  A     V+ SL AL+   +P+ P  A +A
Sbjct: 68  ITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLA 126

Query: 79  KQYKENPEMFTLTARHWTNVYA 100
           ++Y ++ + F   A  +T  Y 
Sbjct: 127 EEYSKDRKKFCKNAEEFTKKYG 148

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  124 bits (313), Expect = 1e-36
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V  L KI+HPNI    G +CL+IL++ W+ A+ L++++  L  L     P+DP +   AK
Sbjct: 99  VVCLKKIFHPNIDL-KGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAK 157

Query: 80  QYKENPEMFTLTARHWTNVYA 100
              E  + F    R   +  +
Sbjct: 158 LLCEGEKEFAEAVRLTMSGGS 178

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  123 bits (310), Expect = 1e-36
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           VK  T ++HPNI    G +CL+IL++ W   +T+ +++  LQ L     P+DP +   A+
Sbjct: 70  VKCETMVYHPNIDL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 128

Query: 80  QYKENPEMFTLTARHWTNVYA 100
             + N  +F    +       
Sbjct: 129 VLQNNRRLFEQNVQRSMRGGY 149

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  120 bits (304), Expect = 2e-35
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           VK  T ++HPNI    G + L+IL++ W   +T+ +++  LQ L     P+DP +   A+
Sbjct: 90  VKCETMVYHPNIDL-EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 148

Query: 80  QYKENPEMFTLTARHWTNVYA 100
             + N  +F    +       
Sbjct: 149 VLQNNRRLFEQNVQRSMRGGY 169

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  120 bits (302), Expect = 2e-35
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 20  VKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
           +KF TKI+HPN+    G ICL I+  + W        VL +L  L+      +P    +A
Sbjct: 70  IKFTTKIYHPNVDE-NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLA 128

Query: 79  KQYKENPEMFTLTARHWTNVYA 100
               +NPE+F   A  +T  + 
Sbjct: 129 DLLTQNPELFRKNAEEFTLRFG 150

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  119 bits (300), Expect = 6e-35
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 20  VKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
           + F+   I H N+ S TG ICL+ILK ++W     L   + ++  L+     D P D  +
Sbjct: 84  ISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDI 143

Query: 78  AKQYKEN-PEMFTLTARHWTNVYA 100
               +      +    +++     
Sbjct: 144 GNIIRCGDMSAYQGIVKYFLAERE 167

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  117 bits (296), Expect = 2e-34
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           VKF T  WHPN+   +G ICLDILK+ W A+  +RT+LLSLQ+L+       P +A  A 
Sbjct: 75  VKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAAD 133

Query: 80  QYKENPEMFTLTARHWTNVYA 100
            +  N   +            
Sbjct: 134 MWS-NQTEYKKVLHEKYKTAQ 153

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  117 bits (296), Expect = 2e-34
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVLLSLQALMAAA-EPDDP 72
           VK LTKIWHPNI+  TG ICL +L++       WA   TL+ V+  L +L       DDP
Sbjct: 80  VKCLTKIWHPNITE-TGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDP 138

Query: 73  QDAVVAKQYKENPEMFTLTARHWTNVYA 100
            +   A+ +  + E F      +   YA
Sbjct: 139 LNIEAAEHHLRDKEDFRNKVDDYIKRYA 166

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  116 bits (293), Expect = 9e-34
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
           +VKFLT  +HPN+ +  G I LDILK++W+A   +RT+LLS+Q+L+     D P +   A
Sbjct: 95  TVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAA 153

Query: 79  KQYKENPEMFTLTARHWTNVYA 100
           + +K NP  F    +   +   
Sbjct: 154 ELWK-NPTAFKKYLQETYSKQV 174

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  113 bits (286), Expect = 6e-33
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
           VKF+T  +HPN+   TG  C+D L   ++W    TL ++LL+LQ +++    ++P +   
Sbjct: 89  VKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEA 148

Query: 78  AKQYKENPEMFTLTARHWT 96
           A+   ++  ++    R + 
Sbjct: 149 ARILVKDESLYRTILRLFN 167

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  109 bits (274), Expect = 3e-31
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
           VKF    +HPN+   +G ICL IL +   W  A+TL+ ++L +Q L+ +  P+ P     
Sbjct: 75  VKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPA 133

Query: 78  AKQYKENPEMFTLTARHWTNVYA 100
            + +  N   +          Y+
Sbjct: 134 WRSFSRNKAEYDKKVLLQAKQYS 156

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  108 bits (272), Expect = 7e-31
 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V+F+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+L+    P+ P ++  A+
Sbjct: 70  VRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 128

Query: 80  QYKENPEMFTLTARHWT 96
            Y E+   +    R   
Sbjct: 129 MYSESKREYNRRVRDVV 145

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  113 bits (284), Expect = 1e-30
 Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           V F T+I+HPNI+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A+
Sbjct: 69  VAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127

Query: 80  QYKENPEMFTLTARHWTNVY 99
            YK + E +   AR WT  Y
Sbjct: 128 IYKTDREKYNRIAREWTQKY 147

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  107 bits (270), Expect = 2e-30
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           VKFL++++HPN+ +  G ICLDIL+++W     + ++L S+Q+L     P  P +   A 
Sbjct: 70  VKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAAT 128

Query: 80  QYKENPEMFTLTARHWTNVYA 100
            +K++   +    +       
Sbjct: 129 LFKDHKSQYVKRVKETVEKSW 149

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  104 bits (261), Expect = 4e-29
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL---LSLQALMAAAEPDDPQDAV 76
           V+F+T ++ P ++   G IC  ++ D W        V+   L        +  DD  +  
Sbjct: 88  VRFVTPVYSPLVTG-EGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPE 146

Query: 77  VAKQYKENPEMFTLTAR 93
                ++ P+ F    R
Sbjct: 147 ARHYLEKFPQDFAARVR 163

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  103 bits (259), Expect = 7e-29
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L+       P  A  
Sbjct: 78  CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEA 136

Query: 78  AKQYKENPEMFTLTARHWTNVYA 100
              Y +N   +    R     +A
Sbjct: 137 YTIYCQNRVEYEKRVRAQAKKFA 159

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  101 bits (254), Expect = 2e-28
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKD-QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            V F++KI  P ++  TG +  D      W  A T+ T+LL L+  MA       +    
Sbjct: 75  KVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKE 134

Query: 78  AKQY 81
            + +
Sbjct: 135 GETF 138

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  101 bits (255), Expect = 3e-28
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
            +F   ++HPN+   +G +CL IL ++  W  A+T++ +LL +Q L+       P     
Sbjct: 81  CRFTPPLFHPNVYP-SGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEA 139

Query: 78  AKQYKENPEMFTLTARHWTNVYA 100
              +K++   +    R      A
Sbjct: 140 YTMFKKDKVEYEKRVRAQARENA 162

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  101 bits (253), Expect = 1e-27
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 15/108 (13%)

Query: 20  VKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAA 66
            +FLTK+WHPNI   TG +C+ IL              ++W     +RT+LLS+ +L+  
Sbjct: 74  FRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNE 132

Query: 67  AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMF 114
                P +   +  Y++  E      R +T++    V     +     
Sbjct: 133 PNTFSPANVDASVMYRKWKESKG-KDREYTDIIRKQVLGTKVDAERDG 179

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 97.4 bits (243), Expect = 2e-26
 Identities = 19/96 (19%), Positives = 45/96 (46%), Gaps = 14/96 (14%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAA 66
           ++F  +++HPNI    G +C+ IL              ++W+   ++  +LLS+ +++A 
Sbjct: 70  MRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE 128

Query: 67  AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGV 102
              +   +   +K ++++ E F   A+       G+
Sbjct: 129 PNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 164

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 90.5 bits (225), Expect = 8e-24
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 20  VKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAA 66
           + F   I HPNI    G +C+ IL             +++W+   ++  +LLS+ ++++ 
Sbjct: 71  LTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSE 129

Query: 67  AEPDDPQDAVVAKQYKENPEMFTLTARHWT 96
              +   +      +++N   F    +   
Sbjct: 130 PNIESGANIDACILWRDNRPEFERQVKLSI 159

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 89.0 bits (221), Expect = 4e-23
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 19  SVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
            V+F+TKI    ++S  G +    + +L  +W  + +++ VL  L+ LM + E       
Sbjct: 94  FVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMKLPQP 152

Query: 76  VVAKQYK 82
              + Y 
Sbjct: 153 PEGQCYS 159

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 88.2 bits (219), Expect = 1e-22
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 14/80 (17%)

Query: 20  VKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAA 66
           +KF+T+IWHPN+    G +C+ IL             +++W    T+ T+++S+ +++A 
Sbjct: 84  MKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 142

Query: 67  AEPDDPQDAVVAKQYKENPE 86
              D P +   AK+++E+  
Sbjct: 143 PNGDSPANVDAAKEWREDRN 162

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 87.1 bits (216), Expect = 2e-22
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 19  SVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
            V+F+TKI    ++S  G +    + +L  +W  + +++ VL  L+ LM + E       
Sbjct: 104 FVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMKLPQP 162

Query: 76  VVAKQYK 82
              + Y 
Sbjct: 163 PEGQCYS 169

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 83.0 bits (206), Expect = 2e-21
 Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 20  VKFLTK-IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 71
           V FL K   H ++ S  G ICL +L D +  ++++  ++LS+ +++++A+   
Sbjct: 72  VYFLQKPPKHTHVYS-NGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 82.0 bits (203), Expect = 8e-21
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 20  VKFLTK-IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 69
           V FL K   H ++ S  G ICL +L D +  ++++  ++LS+ +++++A+ 
Sbjct: 86  VYFLQKPPKHTHVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 81.2 bits (201), Expect = 1e-20
 Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 20  VKFLTK--IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 65
           V F  +    HP++ S  G ICL IL + W+ A+++++V LS+ ++++
Sbjct: 90  VMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 136

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 81.4 bits (201), Expect = 5e-20
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP---QDA 75
           S+  +T       ++       D   D W  A ++ T+L  L + M    P         
Sbjct: 79  SIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSD 138

Query: 76  VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPE 112
              +Q       F L  + +  ++  VV ++ K+  +
Sbjct: 139 FTKRQLAVQSLAFNLKDKVFCELFPEVV-EEIKQKQK 174

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 80.7 bits (199), Expect = 8e-20
 Identities = 11/76 (14%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
           V+ +  +         GA+C+++L  Q W++A ++ +V++ + A +   +      A   
Sbjct: 108 VRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKN 167

Query: 79  K-QYKENPEMFTLTAR 93
           +       + +    +
Sbjct: 168 QYNLARAQQSYNSIVQ 183

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 76.6 bits (189), Expect = 2e-18
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 21/84 (25%)

Query: 5   TVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAIC---LDILKDQWAAAMTLRTVLLSL- 60
           TVKF TKI    + +                G +    L ILK+ W    T+ T+L+SL 
Sbjct: 90  TVKFDTKIEMSCVDN---------------CGRVIKNNLHILKN-WNRNYTIETILISLR 133

Query: 61  QALMAAAEPDDPQDAVVAKQYKEN 84
           Q ++++A    PQ     + Y  N
Sbjct: 134 QEMLSSANKRLPQPN-EGEVYSNN 156

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 71.2 bits (174), Expect = 2e-15
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 24/122 (19%)

Query: 5   TVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-------DQW-AAAMTLRTV 56
            V   T   H         +  ++PN+ +  G +CL IL        ++W     +   V
Sbjct: 145 LVNLETTGGH---------SVRFNPNLYN-DGKVCLSILNTWHGRPEEKWNPQTSSFLQV 194

Query: 57  LLSLQALMAAAEP--DDP--QDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPE 112
           L+S+Q+L+  AEP  ++P  + +       ++   +    R  T  +A  + +Q +    
Sbjct: 195 LVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWA--MLEQIRNPSP 252

Query: 113 MF 114
            F
Sbjct: 253 CF 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	99.98
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	99.98
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	99.98
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	99.98
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	99.98
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	99.98
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	99.98
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	99.98
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	99.97
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	99.97
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	99.97
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	99.97
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	99.97
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	99.97
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	99.97
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	99.97
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	99.97
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	99.97
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	99.97
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	99.97
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	99.97
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	99.97
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	99.97
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	99.97
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	99.97
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	99.97
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	99.97
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	99.97
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	99.97
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	99.96
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	99.96
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	99.96
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	99.96
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.96
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	99.96
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	99.96
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	99.93
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.93
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	99.9
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	99.89
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	99.88
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	99.88
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	99.87
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	99.86
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.85
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	99.84
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.78
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.54
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.51
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	99.5
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.08
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	98.96
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	98.89
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	98.86
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	98.85
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	98.82
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	98.81
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	98.8
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	98.79
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	98.77
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	98.68
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	98.67
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	98.65
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	98.65
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	98.62
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	98.62
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	98.57
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	98.51
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	98.47
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	98.44
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	98.43
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	98.38
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	98.36
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	98.35
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	98.29
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	98.26
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	98.22
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	98.17
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	98.16
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	98.08
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	98.05
2dna_A	67	Unnamed protein product; ubiquitin associated doma	98.04
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	97.99
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	97.96
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	97.82
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	97.81
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	97.7
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	97.66
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	97.15
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	96.93
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	96.91
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	96.6
3e21_A	45	HFAF1, FAS-associated factor 1; UBA, alternative s	96.47
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	96.01
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	95.53
1q02_A	52	Sequestosome 1; helical bundle, protein binding; N	95.27
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	95.09
2dam_A	67	ETEA protein; KIAA0887, UBA-like domain, structura	94.91
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	94.7
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	94.62
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	94.51
2dzl_A	66	Protein FAM100B; UBA-like domain, structural genom	94.19
2dhy_A	67	CUE domain-containing protein 1; structural genomi	92.61
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	92.27
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	88.98
4dbg_B	162	Ring finger protein 31; ubiquitin fold, ubiquitina	85.29
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	85.15
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	84.83
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	84.65
2l2d_A	73	OTU domain-containing protein 7A; UBA fold, struct	84.04
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	83.95
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	83.68
1oai_A	59	Nuclear RNA export factor; nuclear transport, nucl	83.49
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	82.41
2jp7_A	57	MRNA export factor MEX67; solution MEX67, UBA, tra	81.35
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	80.78
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	80.6
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	80.6
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	80.58
1p3q_Q	54	VPS9P, vacuolar protein sorting-associated protein	80.06

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=7e-47  Score=298.38  Aligned_cols=144  Identities=63%  Similarity=0.993  Sum_probs=137.2

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||++.+|.|||++|.++|+|+++|++||.+|+++|.+|++++|+|.+|+++|
T Consensus        57 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~  135 (201)
T 3k9o_A           57 YQLEIKI-PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY  135 (201)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             EEEEEEC-CCcCCCCCCccccccCcccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence            4678888 999999999999999999999996699999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHHHHhcCC
Q psy17486         82 KENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNW  161 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W  161 (172)
                      ++|++.|                          .++||+||++||+++...++++++|+.|++|||++++|+.||+.++|
T Consensus       136 ~~~~~~f--------------------------~~~a~~~~~~~a~~~~~~~~~eekV~~l~~MGf~~~~a~~AL~~~~w  189 (201)
T 3k9o_A          136 KQNPEMF--------------------------KQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSW  189 (201)
T ss_dssp             HHCHHHH--------------------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTT
T ss_pred             HHCHHHH--------------------------HHHHHHHHHHhcccccccchhHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence            9999999                          78888888888888877778999999999999999999999999999


Q ss_pred             ChHHHHHHhhC
Q psy17486        162 ELERATEAIFT  172 (172)
Q Consensus       162 ~~~~a~~~l~~  172 (172)
                      |++.|+|+||+
T Consensus       190 d~~~A~e~L~~  200 (201)
T 3k9o_A          190 DVETATELLLS  200 (201)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHhc
Confidence            99999999984

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=2e-45  Score=298.66  Aligned_cols=144  Identities=62%  Similarity=0.981  Sum_probs=137.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||++.+|.|||++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|
T Consensus       109 f~l~i~f-p~~YP~~PP~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~  187 (253)
T 3e46_A          109 YQLEIKI-PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY  187 (253)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             EEEEEEC-CCCCCCCCCeeeecCCCccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence            4678889 999999999999999999999996699999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHHHHhcCC
Q psy17486         82 KENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNW  161 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W  161 (172)
                      ++|++.|                          .++||+||++||+++...++++++|+.|++|||++++|+.||+.++|
T Consensus       188 ~~d~~~f--------------------------~~~ar~~t~~yA~~~~~~~~~~~~v~~l~~mgf~~~~~~~al~~~nW  241 (253)
T 3e46_A          188 KQNPEMF--------------------------KQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVIVALSSKSW  241 (253)
T ss_dssp             HHCHHHH--------------------------HHHHHHHHHHHHCCSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred             HHCHHHH--------------------------HHHHHHHHHHhcccccCcchHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence            9999999                          88888888889998888888999999999999999999999999999


Q ss_pred             ChHHHHHHhhC
Q psy17486        162 ELERATEAIFT  172 (172)
Q Consensus       162 ~~~~a~~~l~~  172 (172)
                      |++.|+|+||+
T Consensus       242 d~~~A~e~L~~  252 (253)
T 3e46_A          242 DVETATELLLS  252 (253)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHhc
Confidence            99999999984

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=6.6e-44  Score=283.89  Aligned_cols=143  Identities=45%  Similarity=0.780  Sum_probs=94.5

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+..+|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|
T Consensus        72 f~l~i~f-P~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~  150 (216)
T 2pwq_A           72 FTLAITI-PNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMY  150 (216)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             EEEEEEC-CCcCCCCCCcccccCCCcCCCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            4578888 999999999999999999999996699999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHHHHhcCC
Q psy17486         82 KENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNW  161 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W  161 (172)
                      ++|++.|                          .++||+||++||+.+... +++.+|+.+++|||+++.++.||+.++|
T Consensus       151 ~~d~~~f--------------------------~~~ar~~t~~ya~~~~~~-~~~~~v~~~~~mgf~~~~~~~al~~~~~  203 (216)
T 2pwq_A          151 KENHALF--------------------------VKTASVWTKTFATGPKEE-PREVIIKKITEMGFSEDQAKNALIKANW  203 (216)
T ss_dssp             HHCHHHH--------------------------HHHHHHHHHHHSCCC--------------------------------
T ss_pred             HHCHHHH--------------------------HHHHHHHHHHhcCCCccc-chhhHHHHHHHcCCCHHHHHHHHHHcCC
Confidence            9999999                          777777777777776443 4689999999999999999999999999


Q ss_pred             ChHHHHHHhhC
Q psy17486        162 ELERATEAIFT  172 (172)
Q Consensus       162 ~~~~a~~~l~~  172 (172)
                      +++.|+|+|++
T Consensus       204 ~~~~~~~~l~~  214 (216)
T 2pwq_A          204 NETLALNTLLE  214 (216)
T ss_dssp             -----------
T ss_pred             chHHHHHHHhc
Confidence            99999999984

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=2.5e-40  Score=263.15  Aligned_cols=136  Identities=37%  Similarity=0.576  Sum_probs=119.7

Q ss_pred             CCCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486          1 MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         1 ~~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      ++..+|.| |++||++||+|+|.|+||||||+..+|.|||++|.++|+|++||.+||.+|+++|.+|++++|+|.+++++
T Consensus        51 ~f~l~i~f-P~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~  129 (215)
T 1tte_A           51 KFVVDIEV-PMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQH  129 (215)
T ss_dssp             CCEEEEEC-CSCSSSCCCEEEETTTCCCSSSCSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHH
T ss_pred             EEEEEEeC-CccCCCCCCcccccCCCccCcCcCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHH
Confidence            35678999 99999999999999999999999659999999999999999999999999999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCC-----------CchHHHHHHHHHcCCCh
Q psy17486         81 YKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKN-----------PDFDSKIQRLTDMGVMS  149 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~-----------~~~~~kv~~l~~~gf~~  149 (172)
                      |++|++.|.++||+||++||                          +.+...           ...+.+|+.|++|||++
T Consensus       130 ~~~d~~~f~~~ar~~t~~yA--------------------------~~~~~~~~~~~~~~~~~g~~~~~v~~~~~mg~~~  183 (215)
T 1tte_A          130 YLRDRESFNKTAALWTRLYA--------------------------SETSNGQKGNVEESDLYGIDHDLIDEFESQGFEK  183 (215)
T ss_dssp             HHHCHHHHHHHHHHHHHHSS--------------------------CCCSCCSSCCCSCSSCCCCSHHHHHHHHHHTCCH
T ss_pred             HHHCHHHHHHHHHHHHHHhc--------------------------cCCCcccccchhhhhhccccHHHHHHHHHcCCCH
Confidence            99999999555555555555                          433211           01277999999999999


Q ss_pred             HHHHHHHHhcCCCh
Q psy17486        150 HDARVALSTYNWEL  163 (172)
Q Consensus       150 ~~a~~aLs~~~W~~  163 (172)
                      +.|+.||+..+||.
T Consensus       184 ~~~~~al~~~~~~~  197 (215)
T 1tte_A          184 DKIVEVLRRLGVKS  197 (215)
T ss_dssp             HHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHcCCCc
Confidence            99999999999997

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=99.98  E-value=5.1e-33  Score=211.76  Aligned_cols=98  Identities=74%  Similarity=1.129  Sum_probs=91.4

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||++.+|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        60 f~~~i~f-p~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  138 (159)
T 2bep_A           60 YQLEIKI-PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY  138 (159)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             EEEEEeC-CCcCCCCCCEEEeeCCCCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            4578888 999999999999999999999996699999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|++.|.++||+||++||
T Consensus       139 ~~~~~~f~~~a~~~~~~~a  157 (159)
T 2bep_A          139 KQNPEMFKQTARLWAHVYA  157 (159)
T ss_dssp             HHCHHHHHHHHHHHHHHHS
T ss_pred             HHCHHHHHHHHHHHHHHhh
Confidence            9999999777777776665

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=99.98  E-value=1.7e-33  Score=212.28  Aligned_cols=98  Identities=48%  Similarity=0.803  Sum_probs=92.0

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+..+|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        51 f~~~i~f-p~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  129 (149)
T 1fxt_A           51 FVVDIEV-PMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY  129 (149)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCSSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred             EEEEEEC-CCCCCCCCCEEEEeCCCccCCCcCCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            4578888 999999999999999999999996699999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|++.|.++||+||++||
T Consensus       130 ~~d~~~f~~~a~~~~~~~a  148 (149)
T 1fxt_A          130 LRDRESFNKTAALWTRLYA  148 (149)
T ss_dssp             HHCSSHHHHHHHHHHHHHC
T ss_pred             HHCHHHHHHHHHHHHHHhc
Confidence            9999999777777777776

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=99.98  E-value=7.4e-33  Score=209.23  Aligned_cols=97  Identities=45%  Similarity=0.775  Sum_probs=91.1

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+|+++|
T Consensus        53 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  130 (151)
T 4gpr_A           53 FFLDVHF-PVDYPFKAPRVTFMTKVYHPNINK-NGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVL  130 (151)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHH
T ss_pred             EEEEEEC-CCCCCCCcceeEEecCcccceECC-CCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Confidence            4678889 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|+++|.++||+||++||
T Consensus       131 ~~d~~~f~~~ar~~~~~ya  149 (151)
T 4gpr_A          131 RANKKQFEDTAREWTRMYA  149 (151)
T ss_dssp             HHCHHHHHHHHHHHHHHHC
T ss_pred             HHCHHHHHHHHHHHHHHhc
Confidence            9999999777777777766

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=99.98  E-value=9.2e-33  Score=212.34  Aligned_cols=100  Identities=24%  Similarity=0.510  Sum_probs=95.0

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        53 f~l~i~f-p~~YP~~PP~v~F~t~i~HPNI~~-~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~  130 (169)
T 1ayz_A           53 FRLLLEF-DEEYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLF  130 (169)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHH
T ss_pred             EEEEEEC-cccCCCCCCccccccCCccCCCCC-CCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence            4678888 999999999999999999999996 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAGVV  103 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~~~  103 (172)
                      ++|++.|.++||+||++||...
T Consensus       131 ~~d~~~y~~~~r~~~~~~a~~~  152 (169)
T 1ayz_A          131 KDHKSQYVKRVKETVEKSWEDD  152 (169)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999998643

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=99.98  E-value=1.1e-32  Score=211.46  Aligned_cols=97  Identities=44%  Similarity=0.763  Sum_probs=91.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        70 f~l~i~f-p~~YP~~PP~V~F~T~i~HPNI~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~  147 (166)
T 2ayv_A           70 FFLNIHF-PSDYPFKPPKVNFTTKIYHPNINS-QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLY  147 (166)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEECSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             EEEEEeC-CCcCCCCCceeeeccCCcCCcCCC-CCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Confidence            4578888 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|++.|.++||+||++||
T Consensus       148 ~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A          148 KSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             HHCHHHHHHHHHHHHHHHC
T ss_pred             HHCHHHHHHHHHHHHHHhC
Confidence            9999999888888888775

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=99.98  E-value=4.1e-33  Score=211.31  Aligned_cols=97  Identities=46%  Similarity=0.790  Sum_probs=87.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|
T Consensus        54 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~  131 (154)
T 2c2v_B           54 FKLELFL-PEEYPMAAPKVRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQW  131 (154)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEECSCCCCTTBCT-TCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHH
T ss_pred             EEEEEEc-CCCCCCCCCEEEeecCcccCcCcc-CCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            4578888 999999999999999999999995 89999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|+++|.++||+||++||
T Consensus       132 ~~d~~~f~~~ar~~~~~~a  150 (154)
T 2c2v_B          132 KTNEAQAIETARAWTRLYA  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHS
T ss_pred             HHCHHHHHHHHHHHHHHhc
Confidence            9999999666666666665

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=99.98  E-value=9.8e-33  Score=208.16  Aligned_cols=98  Identities=45%  Similarity=0.815  Sum_probs=90.9

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|++||.+|+++|.+|++++|+|.+|+++|
T Consensus        50 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  127 (149)
T 2r0j_A           50 YKLELFL-PEQYPMEPPKVRFLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHF  127 (149)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECSCCCBTTBCT-TCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHH
T ss_pred             EEEEEeC-CcccCCCCCeeEeccCCccCCCCC-CCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            4578888 999999999999999999999995 89999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~  101 (172)
                      ++|+++|.++||+||++||.
T Consensus       128 ~~~~~~f~~~~~~~~~~~a~  147 (149)
T 2r0j_A          128 KQDKNDAEHVARQWNKIYAN  147 (149)
T ss_dssp             HHCHHHHHHHHHHHHHHHSC
T ss_pred             HHCHHHHHHHHHHHHHHHcc
Confidence            99999997777777766663

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=99.98  E-value=1.2e-32  Score=215.78  Aligned_cols=99  Identities=52%  Similarity=0.822  Sum_probs=92.5

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|+|+||||||+..+|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|
T Consensus        94 f~l~i~f-p~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~  172 (193)
T 2f4z_A           94 FTLDIVI-PPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM  172 (193)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             EEEEEEC-CCcCCCCCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            4578888 999999999999999999999996699999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~  101 (172)
                      ++|++.|.++||+||++||+
T Consensus       173 ~~d~~~f~~~ar~~t~~ya~  192 (193)
T 2f4z_A          173 IENHPLFVQTAKLWTETFAK  192 (193)
T ss_dssp             HHCHHHHHHHHHHHHHHHCC
T ss_pred             HHCHHHHHHHHHHHHHHHcc
Confidence            99999997777777777763

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=99.97  E-value=1.7e-32  Score=206.99  Aligned_cols=97  Identities=42%  Similarity=0.752  Sum_probs=91.6

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        53 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~  130 (150)
T 1z2u_A           53 FFLTIHF-PTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY  130 (150)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             EEEEEEC-CCCCCCCCcEEEEecCcccCcCCC-CCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHH
Confidence            4568888 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|++.|.++||+||++||
T Consensus       131 ~~~~~~f~~~~~~~~~~~a  149 (150)
T 1z2u_A          131 KTDRERYNQLAREWTQKYA  149 (150)
T ss_dssp             HHCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999888888877776

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=1.9e-32  Score=210.53  Aligned_cols=97  Identities=38%  Similarity=0.670  Sum_probs=88.2

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC----CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK----DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV   77 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~----~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~a   77 (172)
                      +..+|.| |++||++||+|+|.|+||||||+ .+|.||||+|.    ++|+|+++|.+||.+|+++|.+|++++|+|.+|
T Consensus        53 f~~~i~f-p~~YP~~PP~v~f~t~i~HPNv~-~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~a  130 (169)
T 1yh2_A           53 FKLEVII-PERYPFEPPQIRFLTPIYHPNID-SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADI  130 (169)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBC-TTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred             EEEEEEe-CCCCCCCCcEEEeecCCccccCC-cCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHH
Confidence            4678888 99999999999999999999999 59999999998    899999999999999999999999999999999


Q ss_pred             HHHHhhCHHHHHHHHHHHHHHHH
Q psy17486         78 AKQYKENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        78 a~~~~~~~~~f~~~ar~~t~~~a  100 (172)
                      +++|++|+++|.++||+||++||
T Consensus       131 a~~~~~~~~~y~~~~r~~~~~~a  153 (169)
T 1yh2_A          131 SSEFKYNKPAFLKNARQWTEKHA  153 (169)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHc
Confidence            99999999999555555555544

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=1.2e-32  Score=209.63  Aligned_cols=97  Identities=29%  Similarity=0.545  Sum_probs=91.6

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|.++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        62 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~  139 (158)
T 1zdn_A           62 FRMKLLL-GKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLL  139 (158)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCT-TSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHH
T ss_pred             EEEEEEc-CCCCCCCCCEEEeccCcccCCCCC-CCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            4568888 999999999999999999999995 89999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|++.|.++||+||++||
T Consensus       140 ~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A          140 LENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             HHCHHHHHHHHHHHHHHHC
T ss_pred             HHCHHHHHHHHHHHHHHhC
Confidence            9999999888888887775

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=99.97  E-value=2.7e-32  Score=209.03  Aligned_cols=97  Identities=42%  Similarity=0.754  Sum_probs=91.5

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+|+++|
T Consensus        68 f~l~i~f-p~~YP~~PP~v~F~T~i~HPnV~~-~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~  145 (165)
T 2c4o_A           68 FFLTIHF-PTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY  145 (165)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEECSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             EEEEEEC-CCcCCCCCCEEEEecCCcCCcCCC-CCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHH
Confidence            4568888 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|+++|.++||+||++||
T Consensus       146 ~~d~~~y~~~ar~~~~~~a  164 (165)
T 2c4o_A          146 KTDREKYNRIAREWTQKYA  164 (165)
T ss_dssp             HHCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999777777777776

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=99.97  E-value=3.3e-32  Score=205.86  Aligned_cols=98  Identities=27%  Similarity=0.598  Sum_probs=92.1

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        53 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  130 (152)
T 2aak_A           53 FKLSLQF-SEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMY  130 (152)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCT-TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHH
T ss_pred             EEEEEEC-CCCCCCCCCEEEEecCcccCCCCC-CCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHH
Confidence            4578888 999999999999999999999996 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~  101 (172)
                      ++|+++|.++||+||++||.
T Consensus       131 ~~~~~~y~~~~~~~~~~~a~  150 (152)
T 2aak_A          131 SESKREYNRRVRDVVEQSWT  150 (152)
T ss_dssp             HHCHHHHHHHHHHHHHHHCC
T ss_pred             HHCHHHHHHHHHHHHHHHcc
Confidence            99999998878777777763

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=99.97  E-value=1.8e-32  Score=207.93  Aligned_cols=98  Identities=42%  Similarity=0.741  Sum_probs=91.0

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+ .+|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        54 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  131 (155)
T 1jat_A           54 FELELYL-PDDYPMEAPKVRFLTKIYHPNID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDW  131 (155)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECSCCCBTTBC-TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHH
T ss_pred             EEEEEEc-CCCCCCCCCcceeecccccCCCC-CCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            4678888 99999999999999999999999 699999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~  101 (172)
                      ++|++.|.++||+||++||.
T Consensus       132 ~~~~~~f~~~~r~~~~~~a~  151 (155)
T 1jat_A          132 IKNEQGAKAKAREWTKLYAK  151 (155)
T ss_dssp             HHCHHHHHHHHHHHHHHHSE
T ss_pred             HHCHHHHHHHHHHHHHHhcc
Confidence            99999997766666666663

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=99.97  E-value=5.5e-32  Score=205.21  Aligned_cols=98  Identities=28%  Similarity=0.513  Sum_probs=91.3

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccC-CCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l-~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.+|+++
T Consensus        53 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnV~~-~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~  130 (155)
T 1wzv_A           53 FNLRISF-PPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADL  130 (155)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHH
T ss_pred             EEEEEEC-CCCCCCCCCcceeeCCCccCcCCC-CCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            4678888 999999999999999999999996 999999999 8999999999999999999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      |++|++.|.++||+||++||.
T Consensus       131 ~~~~~~~y~~~~r~~~~~~a~  151 (155)
T 1wzv_A          131 LTQNPELFRKNAEEFTLRFGV  151 (155)
T ss_dssp             HHHCHHHHHHHHHHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            999999997777777777664

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=99.97  E-value=6.5e-32  Score=205.07  Aligned_cols=97  Identities=33%  Similarity=0.581  Sum_probs=92.1

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        58 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~  135 (156)
T 2e2c_A           58 YKLTLEF-PSDYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW  135 (156)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT
T ss_pred             EEEEEEC-CCCCCCCCCEEEEeCCcccCCCcc-CceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence            4568888 999999999999999999999996 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~  101 (172)
                       +|+++|.++||+||++|++
T Consensus       136 -~d~~~y~~~~~~~~~~~~~  154 (156)
T 2e2c_A          136 -SNQTEYKKVLHEKYKTAQS  154 (156)
T ss_dssp             -TCHHHHHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHHHHHhcc
Confidence             8999998888888888874

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=99.97  E-value=8.1e-32  Score=205.98  Aligned_cols=98  Identities=20%  Similarity=0.491  Sum_probs=92.4

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-------------CCcCCcCCHHHHHHHHHHhhcCCC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAE   68 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-------------~~W~p~~~l~~vL~~i~~ll~~p~   68 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.             ++|+|++||++||.+|+++|.+|+
T Consensus        53 f~~~i~f-p~~YP~~PP~v~f~t~i~HPNV~~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn  130 (164)
T 3h8k_A           53 FPAILSF-PLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPN  130 (164)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEECSCCCCTTBCT-TSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             EEEEEEC-CCCCCCCCCEEEEcCCCccCCCCC-CCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCC
Confidence            4578889 999999999999999999999994 9999999996             789999999999999999999999


Q ss_pred             CCChHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q psy17486         69 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        69 ~~~p~n~~aa~~~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      +++|+|.+|+++|++|+++|.++||+||+++++
T Consensus       131 ~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~~  163 (164)
T 3h8k_A          131 DESGANVDASKMWRDDREQFYKIAKQIVQKSLG  163 (164)
T ss_dssp             CSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred             CCCccCHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence            999999999999999999998888888888763

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=99.97  E-value=1e-31  Score=206.06  Aligned_cols=97  Identities=33%  Similarity=0.570  Sum_probs=91.1

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCC------CcCCcCCHHHHHHHHHHhhcC-CCCCChHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKD------QWAAAMTLRTVLLSLQALMAA-AEPDDPQD   74 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~------~W~p~~~l~~vL~~i~~ll~~-p~~~~p~n   74 (172)
                      +..+|.| |++||++||+|+|.|+||||||+ .+|.|||++|..      +|+|+++|++||.+|+++|.+ |++++|+|
T Consensus        63 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnv~-~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n  140 (167)
T 3fn1_B           63 FQFETEV-PDAYNMVPPKVKCLTKIWHPNIT-ETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLN  140 (167)
T ss_dssp             EEEEEEC-CTTBTTBCCEEEECSCCCCSSBC-TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSC
T ss_pred             EEEEEEC-CCCCCCCCCeeEecCCcccCCCC-CCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchh
Confidence            5678899 99999999999999999999999 599999999975      799999999999999999999 79999999


Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy17486         75 AVVAKQYKENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        75 ~~aa~~~~~~~~~f~~~ar~~t~~~a  100 (172)
                      .+|+++|++|+++|.++||+||++||
T Consensus       141 ~eaa~~~~~~~~~f~~~~r~~~~~~A  166 (167)
T 3fn1_B          141 IEAAEHHLRDKEDFRNKVDDYIKRYA  166 (167)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            99999999999999888888888876

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=99.97  E-value=7.9e-32  Score=206.28  Aligned_cols=98  Identities=19%  Similarity=0.435  Sum_probs=92.4

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccC-------------CCCcCCcCCHHHHHHHHHHhhcCCC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAAAE   68 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l-------------~~~W~p~~~l~~vL~~i~~ll~~p~   68 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|||++|             .++|+|+++|++||.+|+++|.+|+
T Consensus        54 f~~~i~f-p~~YP~~PP~v~f~t~i~HPNv~~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn  131 (165)
T 2ucz_A           54 FNAKLEF-PKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPN  131 (165)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCSCTTBCT-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             EEEEEEC-CccCCCCCCEEEEeCCCccCCCCC-CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCC
Confidence            4678888 999999999999999999999995 899999999             6889999999999999999999999


Q ss_pred             CCChHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q psy17486         69 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        69 ~~~p~n~~aa~~~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      +++|+|.+||++|++|+++|.++||+||++|++
T Consensus       132 ~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~~  164 (165)
T 2ucz_A          132 IESGANIDACILWRDNRPEFERQVKLSILKSLG  164 (165)
T ss_dssp             GGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred             CCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998888888888763

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=99.97  E-value=1.2e-31  Score=210.11  Aligned_cols=97  Identities=41%  Similarity=0.671  Sum_probs=91.3

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|.++|.+||.+|+++|.+|++++|+|.+|+.+|
T Consensus        97 f~l~i~f-p~~YP~~PP~V~F~T~i~HPNV~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~  174 (194)
T 3bzh_A           97 FFLDITF-TPEYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY  174 (194)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             EEEEEEC-CCcCCCCCccccccCCCccceECC-CCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHH
Confidence            5678888 999999999999999999999995 89999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|+++|.++||+||++||
T Consensus       175 ~~d~~~f~~~ar~~t~~ya  193 (194)
T 3bzh_A          175 MTNRAEHDRMARQWTKRYA  193 (194)
T ss_dssp             HHCHHHHHHHHHHHHHHHC
T ss_pred             HHCHHHHHHHHHHHHHHhh
Confidence            9999999777777777775

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=99.97  E-value=1.5e-31  Score=204.44  Aligned_cols=97  Identities=23%  Similarity=0.489  Sum_probs=90.9

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCC--CcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK   79 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~--~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~   79 (172)
                      +..+|.| |++||++||+|+|.|+||||||+ .+|.||+++|..  +|+|+++|++||.+|+++|.+|++++|+|.+|++
T Consensus        64 f~l~i~f-p~~YP~~pP~v~F~t~i~HPnV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~  141 (163)
T 3rcz_B           64 YKLTMAF-PEEYPTRPPKCRFTPPLFHPNVY-PSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYT  141 (163)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHH
T ss_pred             EEEEEEC-CCCCCCCCCEEEEeCCCccCCCC-CCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHH
Confidence            4578888 99999999999999999999999 599999999975  4999999999999999999999999999999999


Q ss_pred             HHhhCHHHHHHHHHHHHHHHH
Q psy17486         80 QYKENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        80 ~~~~~~~~f~~~ar~~t~~~a  100 (172)
                      +|++|+++|.++||+||++||
T Consensus       142 ~~~~d~~~y~~~~r~~~~~ya  162 (163)
T 3rcz_B          142 MFKKDKVEYEKRVRAQARENA  162 (163)
T ss_dssp             HHHHCHHHHHHHHHHHHHHTC
T ss_pred             HHHHCHHHHHHHHHHHHHHhC
Confidence            999999999888888888876

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=99.97  E-value=1.2e-31  Score=203.83  Aligned_cols=97  Identities=26%  Similarity=0.559  Sum_probs=90.9

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCC--CcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK   79 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~--~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~   79 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+ .+|.||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+|++
T Consensus        58 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~  135 (157)
T 2gjd_A           58 YPITVEY-PNEYPSKPPKVKFPAGFYHPNVY-PSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWR  135 (157)
T ss_dssp             EEEEEEC-CTTTTTSCCEEECCTTCCCTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHH
T ss_pred             EEEEEEc-CCCCCCCCCeeeccCCCccCCCC-CCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHH
Confidence            4578888 99999999999999999999999 499999999977  7999999999999999999999999999999999


Q ss_pred             HHhhCHHHHHHHHHHHHHHHH
Q psy17486         80 QYKENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        80 ~~~~~~~~f~~~ar~~t~~~a  100 (172)
                      +|++|+++|.++||+||++||
T Consensus       136 ~~~~~~~~y~~~~~~~~~~~a  156 (157)
T 2gjd_A          136 SFSRNKAEYDKKVLLQAKQYS  156 (157)
T ss_dssp             HHHHCHHHHHHHHHHHHHHTB
T ss_pred             HHHHCHHHHHHHHHHHHHHhc
Confidence            999999999777777777776

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=99.97  E-value=5.1e-32  Score=204.92  Aligned_cols=99  Identities=22%  Similarity=0.525  Sum_probs=92.3

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHH-HHHhhcCCCCCChHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~-i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      +..+|.| |++||++||+|+|.|+||||||+..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++
T Consensus        48 f~~~i~f-p~~YP~~pP~v~f~t~i~HPni~~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~  126 (152)
T 2onu_A           48 WKVHVTL-PDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASL  126 (152)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCTTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHH
T ss_pred             EEEEEcC-cccCCCCCCeEEEecCCccCcCcCcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Confidence            4578888 99999999999999999999999659999999999999999999999999 689999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      |++|++.|.++||+||++||.
T Consensus       127 ~~~d~~~y~~~v~~~~~~~a~  147 (152)
T 2onu_A          127 LMKDKNIYEEKVKEYVKLYAS  147 (152)
T ss_dssp             HHHCHHHHHHHHHHHHHHHSC
T ss_pred             HHHCHHHHHHHHHHHHHHhcc
Confidence            999999998888888888774

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=99.97  E-value=8.9e-32  Score=203.88  Aligned_cols=98  Identities=29%  Similarity=0.577  Sum_probs=89.2

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|||++|. ++|+|+++|.+||.+|+++|.+|++++|+|.+|+++
T Consensus        51 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~  128 (154)
T 1c4z_D           51 FRIEINF-PAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEE  128 (154)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCT-TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHH
T ss_pred             EEEEEEe-CCCCCCCCCEEEEeCCCccccCCC-CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHH
Confidence            5678899 999999999999999999999995 9999999996 899999999999999999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      |++|++.|.++||+||++||.
T Consensus       129 ~~~~~~~f~~~~~~~~~~~a~  149 (154)
T 1c4z_D          129 YSKDRKKFCKNAEEFTKKYGE  149 (154)
T ss_dssp             HHTCSSTTHHHHHHHHTTC--
T ss_pred             HHHhHHHHHHHHHHHHHHhcc
Confidence            999999996666666666664

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=99.97  E-value=2.6e-31  Score=202.75  Aligned_cols=98  Identities=24%  Similarity=0.497  Sum_probs=91.3

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCC--CcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK   79 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~--~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~   79 (172)
                      +..+|.| |++||++||+|+|.|+||||||+ .+|.||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+|+.
T Consensus        61 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~  138 (161)
T 2grr_A           61 FKLRMLF-KDDYPSSPPKCKFEPPLFHPNVY-PSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYT  138 (161)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHH
T ss_pred             EEEEEEc-CcccCCCCCEEEEecCcccCCCC-CCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHH
Confidence            4568888 99999999999999999999999 499999999975  8999999999999999999999999999999999


Q ss_pred             HHhhCHHHHHHHHHHHHHHHHH
Q psy17486         80 QYKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        80 ~~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      +|++|+++|.++||+||++||.
T Consensus       139 ~~~~~~~~y~~~~~~~~~~~a~  160 (161)
T 2grr_A          139 IYCQNRVEYEKRVRAQAKKFAP  160 (161)
T ss_dssp             HHHHCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHCHHHHHHHHHHHHHHHhc
Confidence            9999999998888888877764

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=99.97  E-value=7.6e-32  Score=207.57  Aligned_cols=100  Identities=21%  Similarity=0.400  Sum_probs=94.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHH-HHhhcCCCCCChHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSL-QALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i-~~ll~~p~~~~p~n~~aa~~   80 (172)
                      +..+|.| |++||++||+|+|.|+||||||+..+|.|||++|.++|+|+++|++||.+| ++||.+|++++|+|.+|+++
T Consensus        57 f~~~i~f-p~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~  135 (171)
T 1yf9_A           57 WMLHVQL-PSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHL  135 (171)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHH
T ss_pred             EEEEEEc-CCCCCCCCCeEEeecCcccccCcccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Confidence            4578888 999999999999999999999995599999999999999999999999997 79999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHWTNVYAGV  102 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t~~~a~~  102 (172)
                      |++|++.|.++||+||++||..
T Consensus       136 ~~~d~~~y~~~vr~~~~~~a~~  157 (171)
T 1yf9_A          136 LHADRVGFDALLREHVSTHATP  157 (171)
T ss_dssp             HHHCHHHHHHHHHHHHHHHCCH
T ss_pred             HHHCHHHHHHHHHHHHHHHcCh
Confidence            9999999999999999999874

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=99.97  E-value=6.3e-32  Score=209.29  Aligned_cols=99  Identities=29%  Similarity=0.582  Sum_probs=93.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHH-HHHhhcCCCCCChHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~-i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      +..+|.| |++||++||+|+|.|+||||||+..+|.|||++|.++|+|+++|++||.+ |+++|.+|++++|+|.+|+++
T Consensus        70 f~l~i~f-p~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~  148 (179)
T 2z5d_A           70 WKVRVDL-PDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAM  148 (179)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHH
T ss_pred             EEEEeeC-CCCCCCCCceEEEecCCccCcCCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHH
Confidence            4568888 99999999999999999999999659999999999999999999999999 999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      |++|+++|.++||+||++||.
T Consensus       149 ~~~d~~~y~~~vr~~~~~~a~  169 (179)
T 2z5d_A          149 YLHRPEEYKQKIKEYIQKYAT  169 (179)
T ss_dssp             HHHCHHHHHHHHHHHHHHHSS
T ss_pred             HHHCHHHHHHHHHHHHHHHcc
Confidence            999999998888888888886

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=99.97  E-value=4.6e-31  Score=203.38  Aligned_cols=99  Identities=20%  Similarity=0.363  Sum_probs=93.7

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEec-ccccccccCCCCceecccCC-CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLT-KIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK   79 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t-~i~HPnV~~~~G~icl~~l~-~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~   79 (172)
                      +..+|.| |++||++||+|+|.| +||||||+..+|.|||++|. ++|+|+++|.+||.+|+++|.+|++++|+|.+|++
T Consensus        67 f~~~i~f-p~~YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~  145 (172)
T 2y9m_A           67 FRILIEV-PSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGN  145 (172)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHH
T ss_pred             EEEEEEC-CCcCCCCCCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHH
Confidence            4678888 999999999999999 99999997569999999998 89999999999999999999999999999999999


Q ss_pred             HHhh-CHHHHHHHHHHHHHHHHH
Q psy17486         80 QYKE-NPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        80 ~~~~-~~~~f~~~ar~~t~~~a~  101 (172)
                      +|++ |++.|.++||+||++++.
T Consensus       146 ~~~~~d~~~f~~~~~~~~~~~~~  168 (172)
T 2y9m_A          146 IIRCGDMSAYQGIVKYFLAERER  168 (172)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHh
Confidence            9999 999999999999998864

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=7.6e-31  Score=203.29  Aligned_cols=97  Identities=33%  Similarity=0.570  Sum_probs=91.2

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        79 f~l~i~f-p~~YP~~PP~V~F~T~i~HPNV~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~  156 (179)
T 1i7k_A           79 YKLSLEF-PSGYPYNAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW  156 (179)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCSTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT
T ss_pred             EEEEEEC-CCcCCCCCceEEEecCCccCcccc-CCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh
Confidence            4678888 999999999999999999999996 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~  101 (172)
                       +|+++|.++|++++++++.
T Consensus       157 -~d~~~f~~~v~~~v~~~~~  175 (179)
T 1i7k_A          157 -KNPTAFKKYLQETYSKQVT  175 (179)
T ss_dssp             -TSHHHHHHHHHHHHHTTCC
T ss_pred             -hCHHHHHHHHHHHHHHHhc
Confidence             9999998888888877653

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=99.96  E-value=2.6e-30  Score=197.05  Aligned_cols=95  Identities=25%  Similarity=0.504  Sum_probs=89.5

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        53 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~  130 (160)
T 1y8x_A           53 FVFSFKV-GQGYPHDPPKVKCETMVYHPNIDL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVL  130 (160)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred             EEEEEeC-CCcCCCCCCEEEEecCCccCcCCC-CCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            5678899 999999999999999999999995 89999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNV   98 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~   98 (172)
                      ++|++.|.++||++++.
T Consensus       131 ~~~~~~f~~~v~~~v~~  147 (160)
T 1y8x_A          131 QNNRRLFEQNVQRSMRG  147 (160)
T ss_dssp             HSCHHHHHHHHHHHHHS
T ss_pred             HHCHHHHHHHHHHHHhh
Confidence            99999997777777653

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=99.96  E-value=3.6e-30  Score=201.22  Aligned_cols=94  Identities=29%  Similarity=0.572  Sum_probs=88.0

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|
T Consensus        82 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnV~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~  159 (190)
T 3o2u_A           82 INFNLDF-NEVYPIEPPKVVCLKKIFHPNIDL-KGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLL  159 (190)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECSCCCCTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             EEEEEEC-CCCCCCCCceeEEecCcccCCCCC-CCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHH
Confidence            5678899 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTN   97 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~   97 (172)
                      ++|++.|.++||+|++
T Consensus       160 ~~d~~~f~~~ar~~~~  175 (190)
T 3o2u_A          160 CEGEKEFAEAVRLTMS  175 (190)
T ss_dssp             HTCHHHHHHHHHHHHB
T ss_pred             HHCHHHHHHHHHHHHH
Confidence            9999999666666654

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=99.96  E-value=6.9e-30  Score=198.09  Aligned_cols=95  Identities=24%  Similarity=0.466  Sum_probs=89.7

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+.+|
T Consensus        73 f~~~i~f-p~~YP~~PP~v~F~t~i~HPNV~~-~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~  150 (180)
T 2nvu_C           73 FVFSFKV-GQGYPHDPPKVKCETMVYHPNIDL-EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVL  150 (180)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECSCCCBTTBCT-TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             EEEEEeC-CCcCCCCCCcCceeccCccCCCCC-CCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            5678899 999999999999999999999995 89999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNV   98 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~   98 (172)
                      ++|++.|.++||++++.
T Consensus       151 ~~d~~~f~~~v~~~v~~  167 (180)
T 2nvu_C          151 QNNRRLFEQNVQRSMRG  167 (180)
T ss_dssp             HHCHHHHHHHHHHHHHS
T ss_pred             HHCHHHHHHHHHHHHhh
Confidence            99999998887777654

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=99.96  E-value=5.9e-30  Score=198.94  Aligned_cols=100  Identities=27%  Similarity=0.498  Sum_probs=93.7

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-------------CCcCCcCCHHHHHHHHHHhhcCCC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAE   68 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-------------~~W~p~~~l~~vL~~i~~ll~~p~   68 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.             ++|+|+++|++||++|+++|.+|+
T Consensus        57 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnV~~-~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn  134 (183)
T 3rz3_A           57 FKARLKF-PIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPN  134 (183)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCCTTBCT-TSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             EEEEEEC-CCCCCCCCCeeEecCCCccCCCCC-CCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCC
Confidence            5678899 999999999999999999999995 9999999996             889999999999999999999999


Q ss_pred             CCChHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHH
Q psy17486         69 PDDPQDAVVAKQYKE------NPEMFTLTARHWTNVYAGVV  103 (172)
Q Consensus        69 ~~~p~n~~aa~~~~~------~~~~f~~~ar~~t~~~a~~~  103 (172)
                      +++|+|.+|+.+|++      ++++|.++||+++++++...
T Consensus       135 ~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~~v~~s~~~~  175 (183)
T 3rz3_A          135 TFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDA  175 (183)
T ss_dssp             CSSCSSHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998      78999999999999998644

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.96  E-value=2.2e-29  Score=216.31  Aligned_cols=99  Identities=40%  Similarity=0.677  Sum_probs=95.4

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||+++|+++|+|++||++||.+|+++|.+|++++|+|.+|+++|
T Consensus        52 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~  129 (399)
T 4ddg_A           52 FFLTIHF-PTDYPFKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY  129 (399)
T ss_dssp             EEEEEEC-CSSTTTSCCEEEESSCCCCTTBCT-TCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             EEEEEEC-CcccCCCCcEEEeeccccccccCC-CCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHH
Confidence            4578889 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAGV  102 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~~  102 (172)
                      ++|++.|.++||+||++||..
T Consensus       130 ~~d~~~y~~~~~~~~~~~a~~  150 (399)
T 4ddg_A          130 KTDREKYNRIAREWTQKYAMG  150 (399)
T ss_dssp             HHCHHHHHHHHHHHHHHHTSC
T ss_pred             HHCHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999873

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=99.96  E-value=6.5e-30  Score=196.42  Aligned_cols=94  Identities=27%  Similarity=0.522  Sum_probs=87.2

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC--CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK   79 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~--~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~   79 (172)
                      +..+|.| |++||++||+|+|.|+||||||+..+|.|||++|.  ++|+|+++|++||.+|+++|.+|++++|+|.+||+
T Consensus        72 f~l~i~f-p~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~  150 (169)
T 1yrv_A           72 FQLTIHF-TSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAAR  150 (169)
T ss_dssp             EEEEEEC-CTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHH
T ss_pred             EEEEEEC-CccCCCCCCcceecCCCccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHH
Confidence            4578888 99999999999999999999995469999999998  89999999999999999999999999999999999


Q ss_pred             HHhhCHHHHHHHHHHHHH
Q psy17486         80 QYKENPEMFTLTARHWTN   97 (172)
Q Consensus        80 ~~~~~~~~f~~~ar~~t~   97 (172)
                      +|++|++.|.++ |++++
T Consensus       151 l~~~d~~~y~~~-~~~v~  167 (169)
T 1yrv_A          151 ILVKDESLYRTI-LRLFN  167 (169)
T ss_dssp             HHHSCHHHHHHH-HHHHC
T ss_pred             HHHHCHHHHHHH-HHHhh
Confidence            999999999776 66554

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=99.96  E-value=1.3e-29  Score=195.18  Aligned_cols=92  Identities=27%  Similarity=0.634  Sum_probs=60.6

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-------------CCcCCcCCHHHHHHHHHHhhcCCC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAE   68 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-------------~~W~p~~~l~~vL~~i~~ll~~p~   68 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.             ++|+|+++|++||.+|+++|.+|+
T Consensus        67 f~~~i~f-p~~YP~~PP~v~F~T~i~HPNV~~-~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn  144 (172)
T 2awf_A           67 FKAHLTF-PKDYPLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPN  144 (172)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEECSCCCCTTBCT-TCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-
T ss_pred             EEEEEEC-CcccCCCCCcccccCCCccCCCCC-CCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcC
Confidence            4578888 999999999999999999999995 8999999996             689999999999999999999999


Q ss_pred             CCChHHHHHHHHHhhCHH-HHHHHHHHH
Q psy17486         69 PDDPQDAVVAKQYKENPE-MFTLTARHW   95 (172)
Q Consensus        69 ~~~p~n~~aa~~~~~~~~-~f~~~ar~~   95 (172)
                      +++|+|.+||++|++|++ +|.++||++
T Consensus       145 ~~~p~n~~aa~~~~~d~~~~f~~~vr~~  172 (172)
T 2awf_A          145 GDSPANVDAAKEWREDRNGEFKRKVARC  172 (172)
T ss_dssp             ----------------------------
T ss_pred             CCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence            999999999999999999 997777764

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=99.93  E-value=5.9e-27  Score=179.55  Aligned_cols=90  Identities=20%  Similarity=0.412  Sum_probs=82.3

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHH-HHHHhhcC--CCCCChHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLL-SLQALMAA--AEPDDPQDAVVA   78 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~-~i~~ll~~--p~~~~p~n~~aa   78 (172)
                      +..+|.| |++||++||+|+|.|+||||||+ .+|.||+++|.++|+|+++++++|+ .|++|+..  |++++|+|.+|+
T Consensus        71 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa  148 (167)
T 4ds2_A           71 YQLSVLF-SDDYPHEPPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEAR  148 (167)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHH
T ss_pred             EEEEEEC-CCCCCCCCCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHH
Confidence            4578889 99999999999999999999999 5999999999999999999999754 67788875  899999999999


Q ss_pred             HHHhhCHHHHHHHHH
Q psy17486         79 KQYKENPEMFTLTAR   93 (172)
Q Consensus        79 ~~~~~~~~~f~~~ar   93 (172)
                      ++|++|+++|.++||
T Consensus       149 ~l~~~d~~~f~~~vr  163 (167)
T 4ds2_A          149 HYLEKFPQDFAARVR  163 (167)
T ss_dssp             HHHHHCHHHHHHHHT
T ss_pred             HHHHHCHHHHHHHHh
Confidence            999999999977776

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.93  E-value=1.2e-26  Score=193.53  Aligned_cols=122  Identities=19%  Similarity=0.321  Sum_probs=102.2

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecc-----cccccccCCCCceecccCC-------CCcCCcC-CHHHHHHHHHHhhc--C
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTK-----IWHPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALMA--A   66 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~-----i~HPnV~~~~G~icl~~l~-------~~W~p~~-~l~~vL~~i~~ll~--~   66 (172)
                      +..+|.| |++||++||+|+|.|+     ||||||+ .+|.|||++|.       ++|+|++ +|.+||++|++||.  +
T Consensus       129 F~l~I~f-P~dYP~~PP~V~F~T~~g~~~ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~  206 (323)
T 3ceg_A          129 FEFDVYF-PQDYPSSPPLVNLETTGGHSVRFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAE  206 (323)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECCSTTTTCCCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSS
T ss_pred             EEEEEeC-CCCCCCCCCeEEEeccCCCcccccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCC
Confidence            4678888 9999999999999998     9999999 49999999997       6899999 89999999999996  6


Q ss_pred             CCCCChHHHHH--HHHHhhCHHHHHHHHHHHHHHHHHH-------------HHHhhhcCchhhHHHHHHHHHHh
Q psy17486         67 AEPDDPQDAVV--AKQYKENPEMFTLTARHWTNVYAGV-------------VAKQYKENPEMFTLTARHWTNVY  125 (172)
Q Consensus        67 p~~~~p~n~~a--a~~~~~~~~~f~~~ar~~t~~~a~~-------------~~~~~~~~~~~~~~~a~~w~~~~  125 (172)
                      |++++|++.++  +.+|.+|++.|.++||+||.+||..             +..++.-....+.+..+.|.+..
T Consensus       207 Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~~~~l~~Pp~~f~~~i~~hF~~~~~~i~~~~~~w~~e~  280 (323)
T 3ceg_A          207 PYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWIADI  280 (323)
T ss_dssp             GGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTTHHHHHSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhhHHHHhCCCcccHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            77799999987  5789999999999999999999853             23344433444555566776543

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=99.90  E-value=2.2e-25  Score=169.13  Aligned_cols=80  Identities=26%  Similarity=0.365  Sum_probs=72.9

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCce---ecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA   78 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~i---cl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa   78 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.|   ||++|. +|+|+++|++||.+|+++|.+|++++|+|.+++
T Consensus        74 f~l~i~f-p~~YP~~PP~v~F~t~i~HPNV~~-~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa  150 (156)
T 2q0v_A           74 YSLTIFC-DDNYPDSPPTVKFDTKIEMSCVDN-CGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEG  150 (156)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESBCCCCTTBCT-TSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTT
T ss_pred             EEEEEEC-CCcCCCCCCeEEEEcccccCCCcc-CCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHH
Confidence            4578888 999999999999999999999995 8999   899987 599999999999999999999999999999999


Q ss_pred             HHHhhC
Q psy17486         79 KQYKEN   84 (172)
Q Consensus        79 ~~~~~~   84 (172)
                      .+|++|
T Consensus       151 ~~y~~n  156 (156)
T 2q0v_A          151 EVYSNN  156 (156)
T ss_dssp             CBC---
T ss_pred             HHhhhC
Confidence            998765

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=99.89  E-value=1.8e-24  Score=164.62  Aligned_cols=76  Identities=20%  Similarity=0.293  Sum_probs=70.9

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC--CCcCCcCCHHHHHHHHHHhhc-CCCCCChHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMA-AAEPDDPQDAVVA   78 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~--~~W~p~~~l~~vL~~i~~ll~-~p~~~~p~n~~aa   78 (172)
                      +..+|.| |++||++||+|+|.|+||||||+..+|.||+++|.  ++|+|+++|++||.+|+++|. +|++++|+|.+++
T Consensus        78 f~l~i~f-p~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  156 (160)
T 2a4d_A           78 YSLKIEC-GPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  156 (160)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred             EEEEEEC-CCcCCCCCcEEEEecCceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence            4578888 99999999999999999999998669999999997  899999999999999999995 6999999999886

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=99.88  E-value=4e-25  Score=164.49  Aligned_cols=78  Identities=22%  Similarity=0.393  Sum_probs=71.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCce--ecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAI--CLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK   79 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~i--cl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~   79 (172)
                      +..+|.| |++||++||+|+|.|+||||||+..+|.|  ||++|. +|+|+++|++||.+|+++|.+|++++|+|.+++.
T Consensus        59 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~  136 (138)
T 1jat_B           59 YSLSIDC-GPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGE  136 (138)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESBCCCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTC
T ss_pred             EEEEEEC-CCCCCCCCCceEEEcccccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhh
Confidence            4578888 99999999999999999999999756999  999886 8999999999999999999999999999998876


Q ss_pred             HH
Q psy17486         80 QY   81 (172)
Q Consensus        80 ~~   81 (172)
                      +|
T Consensus       137 ~y  138 (138)
T 1jat_B          137 TF  138 (138)
T ss_dssp             BC
T ss_pred             cC
Confidence            54

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=99.88  E-value=4.5e-24  Score=164.00  Aligned_cols=77  Identities=19%  Similarity=0.300  Sum_probs=71.8

Q ss_pred             CCCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC--CCcCCcCCHHHHHHHHHHhhc-CCCCCChHHHHH
Q psy17486          1 MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMA-AAEPDDPQDAVV   77 (172)
Q Consensus         1 ~~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~--~~W~p~~~l~~vL~~i~~ll~-~p~~~~p~n~~a   77 (172)
                      +++.+|.| |++||++||+|+|.|+||||||+..+|.||+++|.  ++|+|++||++||.+|+++|. +|++++|+|.++
T Consensus        87 ~f~l~i~f-p~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~ea  165 (170)
T 2hlw_A           87 IYSLKIEC-GPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG  165 (170)
T ss_dssp             CBCEEEEC-CSSCTTSCCEEEECBCCCCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSC
T ss_pred             EEEEEEEC-CCCCCCCCCeeEEecccccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCccc
Confidence            36788999 99999999999999999999998669999999997  899999999999999999997 599999999887


Q ss_pred             H
Q psy17486         78 A   78 (172)
Q Consensus        78 a   78 (172)
                      +
T Consensus       166 a  166 (170)
T 2hlw_A          166 Q  166 (170)
T ss_dssp             C
T ss_pred             c
Confidence            6

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=99.87  E-value=8.6e-23  Score=149.50  Aligned_cols=67  Identities=24%  Similarity=0.463  Sum_probs=59.1

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEeccc-ccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKI-WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD   70 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i-~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~   70 (172)
                      +..+|.| |++||++||+|+|.|+| |||||+. +|.||+++|.++|+|++||++||.+|+++|.+|+..
T Consensus        55 f~~~i~f-p~~YP~~PP~v~f~t~i~~HPnv~~-~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~  122 (125)
T 2fo3_A           55 YKLKIIF-PDDYPLKPPIVYFLQKPPKHTHVYS-NGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK  122 (125)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECSSCCCBTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred             EEEEEEc-CCCCCCCCCEEEEeCCCCCCCcCCC-CCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence            4578888 99999999999999997 9999995 999999999999999999999999999999999865

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=99.86  E-value=3.1e-22  Score=148.57  Aligned_cols=66  Identities=24%  Similarity=0.483  Sum_probs=62.1

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEeccc-ccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKI-WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP   69 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i-~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~   69 (172)
                      +..+|.| |++||++||+|+|.|+| |||||+. +|.||+++|.++|+|+++|++||.+|+++|.+|+.
T Consensus        69 f~~~i~f-p~~YP~~PP~v~f~t~i~~HPnv~~-~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           69 YKIKIIF-PDNYPLKPPIVYFLQKPPKHTHVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECSSCCCCTTBCT-TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             EEEEEEe-CCCCCCCCCEEEEeCCCCCCCcCCC-CCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            4578888 99999999999999997 9999995 99999999999999999999999999999999874

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.85  E-value=2.2e-22  Score=156.55  Aligned_cols=89  Identities=15%  Similarity=0.335  Sum_probs=75.6

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccc-cccCCCCceecccCC-CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHP-NISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK   79 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HP-nV~~~~G~icl~~l~-~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~   79 (172)
                      +..+|.| |++||++||+|+|.|++||| ||+ .+|.|||++|. ++|+|+++|++||++|+++|.+|++..        
T Consensus        91 f~l~i~f-p~~YP~~PP~V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------  160 (186)
T 1zuo_A           91 ILLNFSF-KDNFPFDPPFVRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------  160 (186)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------
T ss_pred             EEEEEEC-CCCCCCCCCeEEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------
Confidence            4578888 99999999999999999999 699 49999999996 789999999999999999999986532        


Q ss_pred             HHhhCHHHHHHHHHHHHHHHH
Q psy17486         80 QYKENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        80 ~~~~~~~~f~~~ar~~t~~~a  100 (172)
                      .|..++.+|.+++++.+.+.+
T Consensus       161 ~~~~~~~~Y~~~~~~~~~~~~  181 (186)
T 1zuo_A          161 QFGANKNQYNLARAQQSYNSI  181 (186)
T ss_dssp             CTTCCTTCCCHHHHHHHHHHH
T ss_pred             hhccCHHHHhHHHHHHHHHHH
Confidence            455567777777777666543

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=99.84  E-value=2.2e-21  Score=143.96  Aligned_cols=62  Identities=29%  Similarity=0.599  Sum_probs=58.5

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccc--cccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhc
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIW--HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA   65 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~--HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~   65 (172)
                      +..+|.| |++||++||+|+|.|+||  ||||+. +|.||+++|.++|+|+++|++||.+|+++|.
T Consensus        73 f~l~i~f-p~~YP~~PP~v~F~T~i~~~HPNV~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A           73 FQLLFKF-SSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             EEEEEEE-CTTTTTSCCEEEEESSCCCCBTTBCT-TCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             EEEEEEC-CCCCCCCCCEEEEeCCCcCCCccCCC-CCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence            4578889 999999999999999999  999995 9999999999999999999999999999984

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.78  E-value=2.2e-19  Score=139.70  Aligned_cols=67  Identities=21%  Similarity=0.377  Sum_probs=55.6

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccC---CCCcCCcCCHHHHHHHHHHhhcCCCCCCh
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL---KDQWAAAMTLRTVLLSLQALMAAAEPDDP   72 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l---~~~W~p~~~l~~vL~~i~~ll~~p~~~~p   72 (172)
                      ++.+|.| |++||++||+|+|.|+  |||+++ +|.|||++|   .++|+|+++|.+||.+|+++|.+|+++..
T Consensus        63 f~l~i~f-P~~YP~~PP~v~f~T~--~~~~~~-~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g  132 (187)
T 2f4w_A           63 YHGKLIF-PREFPFKPPSIYMITP--NGRFKC-NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG  132 (187)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEECSC--CSSBCT-TSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred             EEEEEEc-CCCCCCCCCcccccCC--Cceecc-CCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence            4678888 9999999999999999  999985 899999999   68999999999999999999999998743

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.54  E-value=4.1e-15  Score=113.00  Aligned_cols=67  Identities=22%  Similarity=0.312  Sum_probs=58.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEec-------c---cc-cccccCCCCceecccCCCCcCC-cCCHHHHHHHHHHhhcCCCC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLT-------K---IW-HPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALMAAAEP   69 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t-------~---i~-HPnV~~~~G~icl~~l~~~W~p-~~~l~~vL~~i~~ll~~p~~   69 (172)
                      |...|.| |.+||++||.|.|.+       +   |+ |||||. +|+||+++|. +|+| ..+|.++|.+|+++|.+|++
T Consensus        83 ~pi~Iwl-P~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~-~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~  159 (162)
T 3r3q_A           83 IPVIMWV-PSMYPVKPPFISINLENFDMNTISSSLPIQEYIDS-NGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQ  159 (162)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCT-TSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred             ccEEEEe-CcccCCCCCEEEEECCCccccccccccCCCCCCCC-CCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCC
Confidence            3456777 999999999998865       1   88 999995 9999999995 6998 68999999999999999999


Q ss_pred             CC
Q psy17486         70 DD   71 (172)
Q Consensus        70 ~~   71 (172)
                      +.
T Consensus       160 d~  161 (162)
T 3r3q_A          160 DQ  161 (162)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.51  E-value=3e-15  Score=113.37  Aligned_cols=72  Identities=10%  Similarity=0.068  Sum_probs=58.6

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecc-cccccccCCCCceecccC-CC---CcCCcCCHHHHHHHHHHhhcCCCCCChHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTK-IWHPNISSVTGAICLDIL-KD---QWAAAMTLRTVLLSLQALMAAAEPDDPQDAV   76 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~-i~HPnV~~~~G~icl~~l-~~---~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~   76 (172)
                      |+.+|.| |++||.+||+|+|.++ ++||||+. +|+||||+| +.   .|+|.++|.++|.-        ....++..|
T Consensus        85 F~L~~~f-Pe~YP~~PPeV~F~~~~~~hpnmY~-~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~e  154 (172)
T 2z6o_A           85 FDIEFDI-PITYPTTAPEIAVPELDGKTAKMYR-GGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVE  154 (172)
T ss_dssp             EEEEEEC-CTTTTTSCCCCBCGGGTTTCSSBCT-TSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHH
T ss_pred             EEEEEEC-CCCCCCCCCeeeeCCCCCCCCCCCC-CCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhh
Confidence            5678888 9999999999999998 99999995 999999999 43   45699999999842        334567777


Q ss_pred             HHHHHhh
Q psy17486         77 VAKQYKE   83 (172)
Q Consensus        77 aa~~~~~   83 (172)
                      +..+..+
T Consensus       155 ip~lv~~  161 (172)
T 2z6o_A          155 IPDLIQK  161 (172)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHc
Confidence            7766543

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=99.50  E-value=9.8e-15  Score=103.59  Aligned_cols=81  Identities=21%  Similarity=0.222  Sum_probs=36.2

Q ss_pred             CCCCCChHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCC---CchHHHHHHH
Q psy17486         66 AAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKN---PDFDSKIQRL  142 (172)
Q Consensus        66 ~p~~~~p~n~~aa~~~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~---~~~~~kv~~l  142 (172)
                      -.....|.++++|++|+++++.|                          ..+|+.||..|++.+...   ..++.+++.|
T Consensus        20 ~~~~~~PQDA~VA~qy~~~~~~f--------------------------~~TAr~WT~~~a~~~~~~~~e~~~~~qL~qL   73 (108)
T 2cwb_A           20 GETTTEAVDAATAEKVFKQYAND--------------------------NGVDGEWTYDDATKTFTVTEGSQWQPQLQQL   73 (108)
T ss_dssp             ---------------------------------------------------------------------CCTTHHHHHHH
T ss_pred             CcccCCchhHHHHHHHHhchhcc--------------------------ccccccccccCcCCCCCCCcccchHHHHHHH
Confidence            34456789999999999999999                          778888886666544321   3468999999


Q ss_pred             HHcCC-ChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        143 TDMGV-MSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       143 ~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ++||| +++.++.||+..+||++.|+|+|++
T Consensus        74 ~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~  104 (108)
T 2cwb_A           74 RDMGIQDDELSLRALQATGGDIQAALELIFA  104 (108)
T ss_dssp             HTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            99999 6689999999999999999999983

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.08  E-value=6.4e-11  Score=88.42  Aligned_cols=59  Identities=14%  Similarity=0.244  Sum_probs=51.3

Q ss_pred             cEEEEcCCCCCCCCCeeEEecc------cccccccCCCCceecccCCCCcCC-cCCHHHHHHHHHHhhcC
Q psy17486          4 TTVKFVTKIWHPNISSVKFLTK------IWHPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALMAA   66 (172)
Q Consensus         4 ~~i~F~p~~YP~~pP~v~F~t~------i~HPnV~~~~G~icl~~l~~~W~p-~~~l~~vL~~i~~ll~~   66 (172)
                      ..|-| |.+||++||.| |.++      ..|||||. +|+||++.|.+ |++ ..+|.+++..++++|..
T Consensus        73 i~Iwl-p~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~-~G~i~lpyL~~-W~~~~snL~~ll~~l~~~F~~  138 (146)
T 3obq_A           73 ICLWL-LDTYPYNPPIC-FVKPTSSMTIKTGKHVDA-NGKIYLPYLHE-WKHPQSDLLGLIQVMIVVFGD  138 (146)
T ss_dssp             EEEEC-CTTTTTSCCEE-EECCCTTEEECCBTTBCT-TCBBCCHHHHT-CCTTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEe-CccCCCCCCEE-EEeCCCCCEECCCCCCCC-CCCEecccccc-cCCCCCCHHHHHHHHHHHHhh
Confidence            45666 99999999999 7766      58999996 99999999965 987 78999999999998875

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=98.96  E-value=7.1e-11  Score=87.80  Aligned_cols=51  Identities=10%  Similarity=0.156  Sum_probs=42.6

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecc-cccccccCCCCceecccCCCCcCCc-------CCHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTK-IWHPNISSVTGAICLDILKDQWAAA-------MTLRTVL   57 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~-i~HPnV~~~~G~icl~~l~~~W~p~-------~~l~~vL   57 (172)
                      |+..|.| |.+||..||+|+|.+. ++|||++ .+|+||||++   |+|.       ++|...|
T Consensus        87 FkLefdi-P~tYP~tPPeI~Fp~ldgkt~kmY-r~GkICLdIh---wkPlW~~n~P~fGiahal  145 (168)
T 3kpa_A           87 FEMNFDI-PVTYPQAPPEIALPELEGKTVKMY-RGGKICMTTH---FFPLWARNVPYFGISHVL  145 (168)
T ss_dssp             EEEEEEC-CTTTTTSCCCCBCGGGTTTCSSEE-TTTEECCCTT---HHHHHHHTTTTCCHHHHH
T ss_pred             EEEEEeC-CccCCCCCCEeecccccCcCcccc-CCCcEEeccc---cchhhHhcCCchhHHHHH
Confidence            4567888 9999999999999995 8999999 5999999997   6664       5566554

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.89  E-value=1e-09  Score=67.17  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=36.7

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ..+.+|+.|++|||+++.|+.||+..+||++.|+++|++
T Consensus         7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~   45 (49)
T 1ify_A            7 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT   45 (49)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            468899999999999999999999999999999999983

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=98.86  E-value=4.2e-09  Score=61.43  Aligned_cols=39  Identities=33%  Similarity=0.469  Sum_probs=36.1

Q ss_pred             CchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        133 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       133 ~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ++.+.+|+.|++|||+++.|+.||...+||++.|++.|+
T Consensus         2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence            456889999999999999999999999999999999986

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=98.85  E-value=4.9e-09  Score=64.94  Aligned_cols=39  Identities=21%  Similarity=0.336  Sum_probs=37.0

Q ss_pred             chHHHHHHHHHcCC-ChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        134 DFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       134 ~~~~kv~~l~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      .+..+|+.|++||| +++.++.||+..+||++.|+++|++
T Consensus        11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~   50 (52)
T 2jy5_A           11 RFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG   50 (52)
T ss_dssp             TTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            57899999999999 9999999999999999999999985

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=98.82  E-value=4.2e-09  Score=69.65  Aligned_cols=41  Identities=27%  Similarity=0.354  Sum_probs=38.4

Q ss_pred             CCchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        132 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       132 ~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      .+..+.+|+.|++|||+++.|+.||+..+||++.|+++||+
T Consensus        26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~   66 (73)
T 1vg5_A           26 VAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS   66 (73)
T ss_dssp             SCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             CcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            45679999999999999999999999999999999999984

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=98.81  E-value=6.2e-09  Score=62.88  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             hHHHHHHHHHcCC-ChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ++.+|+.|++||| +++.++.||+..+||++.|+++|++
T Consensus         7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~   45 (46)
T 2bwb_A            7 YEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   45 (46)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            5789999999999 5777899999999999999999985

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=98.80  E-value=5.2e-09  Score=62.19  Aligned_cols=37  Identities=32%  Similarity=0.591  Sum_probs=35.2

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      +.+|+.|++|||+++.|+.||...+||++.|+++|++
T Consensus         5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~   41 (43)
T 2g3q_A            5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence            5789999999999999999999999999999999984

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.79  E-value=1.6e-09  Score=69.94  Aligned_cols=51  Identities=20%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             HHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHHHHhcCC-ChHHHHHHhhC
Q psy17486        117 TARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIFT  172 (172)
Q Consensus       117 ~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W-~~~~a~~~l~~  172 (172)
                      ..|.||..|+..+.     +..|+.|++|||+++.|+.||...+| +++.|++.||+
T Consensus         6 ~~r~~t~~ya~~~~-----e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~   57 (64)
T 2cpw_A            6 SGRNRQQRPGTIKH-----GSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS   57 (64)
T ss_dssp             CSCCSCCSSCSSSC-----CCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             ccchhhhcccccCC-----HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            35789999988742     45799999999999999999999999 99999999984

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=98.77  E-value=5.2e-09  Score=65.06  Aligned_cols=38  Identities=21%  Similarity=0.353  Sum_probs=36.1

Q ss_pred             chHHHHHHHHHcCC-ChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        134 DFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       134 ~~~~kv~~l~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      .++.+|+.|++||| +++.++.||+..+||++.|+++|+
T Consensus        10 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~   48 (53)
T 2knz_A           10 RFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLL   48 (53)
T ss_dssp             HHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence            46788999999999 999999999999999999999998

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.68  E-value=2.1e-08  Score=67.70  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      .+.+|+.|++|||+++.|+.||+..+||++.|+++||+
T Consensus        29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~s   66 (83)
T 1veg_A           29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAH   66 (83)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            47899999999999999999999999999999999983

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=98.67  E-value=1.7e-08  Score=63.81  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             hHHHHHHHHHcCC-ChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ++.+|+.|++||| +++.++.||+..+||++.|+|+|++
T Consensus        17 ~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~   55 (58)
T 1wr1_B           17 YEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   55 (58)
T ss_dssp             THHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            5789999999999 6788899999999999999999983

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.65  E-value=3.3e-08  Score=65.42  Aligned_cols=39  Identities=15%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             chHHHHHHHHHcCC-ChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        134 DFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       134 ~~~~kv~~l~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      .++.+|+.|++||| +++.++.||+..+||++.|+|+||+
T Consensus        28 ~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~   67 (74)
T 1vej_A           28 RYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG   67 (74)
T ss_dssp             TSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            47889999999999 7888899999999999999999984

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=98.65  E-value=9.2e-09  Score=62.39  Aligned_cols=39  Identities=15%  Similarity=0.110  Sum_probs=36.6

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      +....|++|++|||++..|+.||...+||++.|++.||+
T Consensus         3 ~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~   41 (47)
T 1dv0_A            3 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS   41 (47)
T ss_dssp             CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            457889999999999999999999999999999999985

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.62  E-value=4.7e-08  Score=60.92  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=34.4

Q ss_pred             chHHHHHHHHHcCCCh-HHHHHHHHhcCCChHHHHHHhh
Q psy17486        134 DFDSKIQRLTDMGVMS-HDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~-~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      .++.+++.|++|||.. +.++.||+..+||++.|++.|+
T Consensus         8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~   46 (54)
T 2dah_A            8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLR   46 (54)
T ss_dssp             SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4688999999999954 5679999999999999999998

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.62  E-value=3e-08  Score=63.77  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=34.9

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      +++|+.|++|||+++.|+.||...+||++.|+++|+
T Consensus        10 ~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~   45 (63)
T 1wji_A           10 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLL   45 (63)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence            788999999999999999999999999999999998

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=98.57  E-value=5.3e-08  Score=64.37  Aligned_cols=38  Identities=29%  Similarity=0.391  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      -.++|+.|++|||+++.|+.||+..+|+++.|+++|++
T Consensus        29 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~   66 (73)
T 1wiv_A           29 DQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN   66 (73)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            37889999999999999999999999999999999983

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=1.2e-07  Score=60.90  Aligned_cols=37  Identities=32%  Similarity=0.381  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ...+|+.|++|||+++.|+.||+..+|+++.|+++|+
T Consensus         9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~   45 (63)
T 2dak_A            9 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIF   45 (63)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4789999999999999999999999999999999997

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.47  E-value=1.4e-07  Score=66.03  Aligned_cols=41  Identities=27%  Similarity=0.551  Sum_probs=38.5

Q ss_pred             CCchHHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        132 NPDFDSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       132 ~~~~~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      +++++.+|+.|++| ||+++.|+.||++++||++.|+++||+
T Consensus        36 d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lle   77 (104)
T 1wj7_A           36 DADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLE   77 (104)
T ss_dssp             CHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            45789999999999 999999999999999999999999984

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.44  E-value=2.5e-07  Score=62.83  Aligned_cols=37  Identities=35%  Similarity=0.478  Sum_probs=35.3

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ..+|++|++|||+++.|+.||+..+|+++.|+++|++
T Consensus        22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~   58 (85)
T 2dkl_A           22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLE   58 (85)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            7789999999999999999999999999999999984

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=2.4e-07  Score=55.92  Aligned_cols=37  Identities=35%  Similarity=0.448  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ...+|+.|++|||+++.|+.||+..+ +++.|+++|++
T Consensus         9 ~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~   45 (47)
T 2ekk_A            9 NQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLT   45 (47)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence            47899999999999999999999997 99999999984

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=98.38  E-value=5.7e-07  Score=54.92  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=35.0

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      .+..|.+|++|||++++|+.||...+||++.|+..|+
T Consensus        11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLl   47 (52)
T 2ooa_A           11 VDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILR   47 (52)
T ss_dssp             CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence            4689999999999999999999999999999999886

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.36  E-value=1.1e-06  Score=53.94  Aligned_cols=38  Identities=26%  Similarity=0.310  Sum_probs=35.5

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ..+.+|..|++|||++++|+.||...+||++.|+..|+
T Consensus         8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~   45 (53)
T 2d9s_A            8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILR   45 (53)
T ss_dssp             CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHH
Confidence            35788999999999999999999999999999999886

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.35  E-value=3e-07  Score=58.10  Aligned_cols=39  Identities=13%  Similarity=0.164  Sum_probs=36.5

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      -+.+.|+.|+.|||.+++|+.||++.+.|+++|++.||+
T Consensus        18 se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFS   56 (63)
T 1wgn_A           18 SERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA   56 (63)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            357889999999999999999999999999999999984

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=8.9e-07  Score=59.83  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      -...|+.|++|||+++.|+.||...+|+++.|+++||
T Consensus        29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~   65 (83)
T 2dai_A           29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLI   65 (83)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence            3788999999999999999999999999999999998

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=1e-06  Score=58.24  Aligned_cols=36  Identities=25%  Similarity=0.230  Sum_probs=34.2

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcC-CChHHHHHHhh
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYN-WELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~-W~~~~a~~~l~  171 (172)
                      ...|+.|++|||+++.|+.||...+ |+++.|+++||
T Consensus        10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~   46 (74)
T 2dag_A           10 ESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVM   46 (74)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            7889999999999999999999998 58999999998

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.22  E-value=1e-06  Score=56.67  Aligned_cols=36  Identities=25%  Similarity=0.289  Sum_probs=33.9

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhc-CCChHHHHHHhh
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTY-NWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~-~W~~~~a~~~l~  171 (172)
                      ...|++|++|||++..|+.||... +|+++.|+++||
T Consensus        10 ~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl   46 (64)
T 1whc_A           10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLM   46 (64)
T ss_dssp             CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            567999999999999999999999 699999999997

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.17  E-value=2.7e-06  Score=52.67  Aligned_cols=37  Identities=14%  Similarity=0.185  Sum_probs=34.5

Q ss_pred             hHHHHHHHHHcCC-ChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        135 FDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       135 ~~~kv~~l~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      +..+++.|.+||| |++.-+.+|+.++|++++|++.|+
T Consensus         9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll   46 (54)
T 2cp8_A            9 TAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELL   46 (54)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence            5668999999999 888889999999999999999987

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=98.16  E-value=2e-06  Score=58.24  Aligned_cols=38  Identities=16%  Similarity=0.185  Sum_probs=34.9

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcC-CChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYN-WELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~-W~~~~a~~~l~~  172 (172)
                      -...|+.|++|||+++.|+.||...+ |+++.|+++||+
T Consensus        29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~   67 (84)
T 1vek_A           29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLS   67 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            37899999999999999999999885 999999999983

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.08  E-value=3.4e-06  Score=54.18  Aligned_cols=36  Identities=28%  Similarity=0.237  Sum_probs=33.2

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCC-ChHHHHHHhh
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W-~~~~a~~~l~  171 (172)
                      ...|+.|++|||+++.|+.||...++ +++.|+++||
T Consensus        10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~   46 (64)
T 2crn_A           10 PSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLH   46 (64)
T ss_dssp             CSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45789999999999999999999876 9999999997

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=98.05  E-value=5.5e-06  Score=50.94  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=35.8

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ..+..|..|++|||+++.|+.||.-.+.|++.|++.|+
T Consensus         6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLl   43 (56)
T 2juj_A            6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR   43 (56)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred             CChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHH
Confidence            46889999999999999999999999999999999886

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.04  E-value=4.8e-06  Score=53.87  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHcCCCh-HHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGVMS-HDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~-~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      +...++.|++|||.. +.++.||...++|+++|+|+|++
T Consensus        19 y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~   57 (67)
T 2dna_A           19 FSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKS   57 (67)
T ss_dssp             THHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            567999999999855 55599999999999999999983

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=97.99  E-value=1.2e-05  Score=47.71  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=35.6

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      .++..|..|++|||+++.|+.||.-.+.|++.|++.|+
T Consensus         3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~   40 (46)
T 2oo9_A            3 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR   40 (46)
T ss_dssp             HHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence            36889999999999999999999999999999999886

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=97.96  E-value=8e-06  Score=59.06  Aligned_cols=38  Identities=34%  Similarity=0.393  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ....|+.|++|||+++.|+.||...+|+++.|+++|++
T Consensus        78 ~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~  115 (126)
T 2lbc_A           78 PEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFS  115 (126)
T ss_dssp             CHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            47889999999999999999999999999999999984

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=97.81  E-value=1.9e-05  Score=56.64  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ..+.|..|.+|||+++.|+.||..++.|+++|+|.|++
T Consensus        76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~  113 (118)
T 4ae4_A           76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA  113 (118)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            35679999999999999999999999999999999984

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=97.70  E-value=2.4e-05  Score=66.28  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=37.2

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ..+..|+.|++|||+++.|+.||...+||+++|+|+|++
T Consensus       167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~  205 (368)
T 1oqy_A          167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT  205 (368)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            478999999999999999999999999999999999984

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=97.66  E-value=2.6e-05  Score=66.06  Aligned_cols=40  Identities=18%  Similarity=0.170  Sum_probs=37.7

Q ss_pred             CchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        133 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       133 ~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ++....|+.|++|||+++.|+.||..++||++.|+++||+
T Consensus       323 ~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~  362 (368)
T 1oqy_A          323 PQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS  362 (368)
T ss_dssp             TTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHH
T ss_pred             CcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhh
Confidence            5678999999999999999999999999999999999984

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=97.15  E-value=0.00039  Score=49.74  Aligned_cols=39  Identities=15%  Similarity=0.232  Sum_probs=35.9

Q ss_pred             CchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        133 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       133 ~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      +...+.|+.|++|||++..|..||...+.+++.|+++|+
T Consensus         6 ~~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~   44 (118)
T 4ae4_A            6 PSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLF   44 (118)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence            346788999999999999999999999999999999997

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.93  E-value=0.0011  Score=40.63  Aligned_cols=39  Identities=26%  Similarity=0.124  Sum_probs=34.3

Q ss_pred             CchHHHHHHHHHcCCChHHHHHHHHhcCC-ChHHHHHHhh
Q psy17486        133 PDFDSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIF  171 (172)
Q Consensus       133 ~~~~~kv~~l~~~gf~~~~a~~aLs~~~W-~~~~a~~~l~  171 (172)
                      +...+.++.|++|||+++-|..||+.-+. .++.|+|.|.
T Consensus         7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~   46 (54)
T 2cos_A            7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS   46 (54)
T ss_dssp             SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence            34588899999999999999999998887 6999999885

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=96.91  E-value=0.0077  Score=46.52  Aligned_cols=125  Identities=31%  Similarity=0.418  Sum_probs=86.2

Q ss_pred             CCcEEEEcCCCCCCCC-C-e--e--EEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHH
Q psy17486          2 VDTTVKFVTKIWHPNI-S-S--V--KFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA   75 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~p-P-~--v--~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~   75 (172)
                      ..|+|+|.++.|+.+. + .  |  ..+..-|.|..+-                 .+|-.-|.++..-....+|.++..+
T Consensus        70 ~pP~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i-----------------~~vL~~i~~ll~~p~p~~p~n~~aa  132 (201)
T 3k9o_A           70 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL-----------------RTVLLSLQALLAAAEPDDPQDAVVA  132 (201)
T ss_dssp             SCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCH-----------------HHHHHHHHHHHHSCCTTSCSCHHHH
T ss_pred             CCCccccccCcccCCCcCCCCeeeCcccccCCCCCCCH-----------------HHHHHHHHHHhcCCCCCCcccHHHH
Confidence            4689999999987664 2 1  1  1222446665331                 1233345666667788999999999


Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHH
Q psy17486         76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVA  155 (172)
Q Consensus        76 ~aa~~~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~a  155 (172)
                      +....-++.+..-   ||+||++||+.....    + .++...+...   .+|.    +.++.++.|...++|.+.|+..
T Consensus       133 ~~~~~~~~~f~~~---a~~~~~~~a~~~~~~----~-~~eekV~~l~---~MGf----~~~~a~~AL~~~~wd~~~A~e~  197 (201)
T 3k9o_A          133 NQYKQNPEMFKQT---ARLWAHVYAGAPVSS----P-EYTKKIENLC---AMGF----DRNAVIVALSSKSWDVETATEL  197 (201)
T ss_dssp             HHHHHCHHHHHHH---HHHHHHHHHCCCCCC----H-HHHHHHHHHH---TTTC----CHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHCHHHHHHH---HHHHHHHhccccccc----c-hhHHHHHHHH---HcCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence            9999888888888   999999999853221    1 1233333333   5555    4688899999999999999988


Q ss_pred             HHh
Q psy17486        156 LST  158 (172)
Q Consensus       156 Ls~  158 (172)
                      |-.
T Consensus       198 L~~  200 (201)
T 3k9o_A          198 LLS  200 (201)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            754

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=96.60  E-value=0.022  Score=45.66  Aligned_cols=124  Identities=31%  Similarity=0.429  Sum_probs=84.3

Q ss_pred             CCcEEEEcCCCCCCCC-C---ee--EEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHH
Q psy17486          2 VDTTVKFVTKIWHPNI-S---SV--KFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA   75 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~p-P---~v--~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~   75 (172)
                      -.|+|+|+++.|+.+. +   .|  ..+..-|.|..+-                 .+|-.-|.++..-....+|.++..+
T Consensus       122 ~PP~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti-----------------~~vL~sI~~ll~~pnp~~Pln~eaa  184 (253)
T 3e46_A          122 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL-----------------RTVLLSLQALLAAAEPDDPQDAVVA  184 (253)
T ss_dssp             SCCEEEESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCH-----------------HHHHHHHHHHHHSCCTTSCSCHHHH
T ss_pred             CCCeeeecCCCccCCccCCCCeeecccccCCCCCCCCH-----------------HHHHHHHHHHhcCCCCCChhhHHHH
Confidence            4689999999987654 2   11  1123446665331                 1233345566667788899999999


Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHH
Q psy17486         76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVA  155 (172)
Q Consensus        76 ~aa~~~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~a  155 (172)
                      .....-++.+..-   ||+||++||+....    .| .++...+...   .++.    +.++.+..|...|+|.+.|+..
T Consensus       185 ~l~~~d~~~f~~~---ar~~t~~yA~~~~~----~~-~~~~~v~~l~---~mgf----~~~~~~~al~~~nWd~~~A~e~  249 (253)
T 3e46_A          185 NQYKQNPEMFKQT---ARLWAHVYAGAPVS----SP-EYTKKIENLC---AAGF----DRNAVIVALSSKSWDVETATEL  249 (253)
T ss_dssp             HHHHHCHHHHHHH---HHHHHHHHHCCSCC----CH-HHHHHHHHHH---HTTC----CHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHCHHHHHHH---HHHHHHHhcccccC----cc-hHHHHHHHHH---HcCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence            9999888888888   99999999985322    11 1233333333   4454    3588899999999999999887


Q ss_pred             HH
Q psy17486        156 LS  157 (172)
Q Consensus       156 Ls  157 (172)
                      |=
T Consensus       250 L~  251 (253)
T 3e46_A          250 LL  251 (253)
T ss_dssp             HH
T ss_pred             Hh
Confidence            74

>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}

Probab=96.47  E-value=0.004  Score=36.93  Aligned_cols=38  Identities=21%  Similarity=0.410  Sum_probs=31.9

Q ss_pred             chHHHHHHHHHc-CCCh-HHHHHHHHhcCCChHHHHHHhh
Q psy17486        134 DFDSKIQRLTDM-GVMS-HDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       134 ~~~~kv~~l~~~-gf~~-~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      +.+.+|..++++ |.+. ..|+..|..++||++.|+...+
T Consensus         4 d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~   43 (45)
T 3e21_A            4 DREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI   43 (45)
T ss_dssp             CHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred             cHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence            358889999887 7675 9999999999999999987654

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=96.01  E-value=0.013  Score=34.36  Aligned_cols=36  Identities=19%  Similarity=0.476  Sum_probs=30.8

Q ss_pred             HHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      +.+|..++.. |-++..|+..|..++|+++.|+...+
T Consensus         6 ~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff   42 (46)
T 1v92_A            6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFY   42 (46)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            5677888765 77999999999999999999998765

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.53  E-value=0.026  Score=35.47  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=32.7

Q ss_pred             chHHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        134 DFDSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       134 ~~~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ..+++|+.++.. |-++..|+..|..++||++.|+...+
T Consensus        14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff   52 (62)
T 2dal_A           14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFL   52 (62)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            457788888765 88899999999999999999998765

>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A

Probab=95.27  E-value=0.015  Score=35.27  Aligned_cols=39  Identities=21%  Similarity=0.405  Sum_probs=34.5

Q ss_pred             CCchHHHHHHHHHcCCChHHH--HHHHHhcCCChHHHHHHh
Q psy17486        132 NPDFDSKIQRLTDMGVMSHDA--RVALSTYNWELERATEAI  170 (172)
Q Consensus       132 ~~~~~~kv~~l~~~gf~~~~a--~~aLs~~~W~~~~a~~~l  170 (172)
                      ++.....+.+|.+|||+.+..  ...|..++.|..+|++.|
T Consensus         7 D~rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~l   47 (52)
T 1q02_A            7 DPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI   47 (52)
T ss_dssp             CHHHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence            455788899999999999887  689999999999999876

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=95.09  E-value=0.058  Score=33.63  Aligned_cols=38  Identities=13%  Similarity=0.190  Sum_probs=34.9

Q ss_pred             chHHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        134 DFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       134 ~~~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ..+..++.|.+|  +++...+..+|.+++++++.|++.|+
T Consensus         8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL   47 (59)
T 1wgl_A            8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLL   47 (59)
T ss_dssp             SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            468899999999  77889999999999999999999997

>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.91  E-value=0.042  Score=35.12  Aligned_cols=38  Identities=24%  Similarity=0.464  Sum_probs=32.3

Q ss_pred             chHHHHHHHHHc-C-CChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        134 DFDSKIQRLTDM-G-VMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       134 ~~~~kv~~l~~~-g-f~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      +.+.+|+.++.. | -++..|+..|..++||++.|+...+
T Consensus        17 ~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff   56 (67)
T 2dam_A           17 EQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRL   56 (67)
T ss_dssp             HHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            456788888876 5 5889999999999999999998765

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=94.70  E-value=0.076  Score=31.88  Aligned_cols=38  Identities=26%  Similarity=0.368  Sum_probs=34.3

Q ss_pred             chHHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        134 DFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       134 ~~~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      +.+.+++.|.+|  ..+...+..+|+.+++|.+.|++.||
T Consensus         3 ~~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL   42 (49)
T 1otr_A            3 DHESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLL   42 (49)
T ss_dssp             SHHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred             hhHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            357889999999  77889999999999999999999987

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=94.62  E-value=0.062  Score=41.98  Aligned_cols=122  Identities=22%  Similarity=0.326  Sum_probs=64.2

Q ss_pred             CCcEEEEcCCCCCCCC-C-e----eEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHH
Q psy17486          2 VDTTVKFVTKIWHPNI-S-S----VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA   75 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~p-P-~----v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~   75 (172)
                      ..|+|+|+++.|+.+. + .    +..+..-|.|..+-  ..|               -.-|.++..-....+|.++..+
T Consensus        65 ~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti--~~V---------------L~sI~sLL~~Pnp~~Pln~eaa  127 (215)
T 1tte_A           65 KPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITL--KSA---------------LISLQALLQSPEPNDPQDAEVA  127 (215)
T ss_dssp             CCCEEEETTTCCCSSSCSSSSCCCSSTTTCCSCTTCCH--HHH---------------HHHHHHHHTSCCCSSCSCHHHH
T ss_pred             CCCcccccCCCccCcCcCCCCEEECccCCCCCCCcCcH--HHH---------------HHHHHHHHhCCCCCCccCHHHH
Confidence            4689999999998665 2 1    12233446665431  122               2234455555667777787766


Q ss_pred             HHHH----HHhhCHHHHHHHHHHHHHHHHHHHHHhhhcC---chhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCC
Q psy17486         76 VVAK----QYKENPEMFTLTARHWTNVYAGVVAKQYKEN---PEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVM  148 (172)
Q Consensus        76 ~aa~----~~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~---~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~  148 (172)
                      ....    .|.+.-+.+   +++++..-.........+.   +-.-.++.+.-    .++.    +.++.++.|..+|+|
T Consensus       128 ~~~~~d~~~f~~~ar~~---t~~yA~~~~~~~~~~~~~~~~~g~~~~~v~~~~----~mg~----~~~~~~~al~~~~~~  196 (215)
T 1tte_A          128 QHYLRDRESFNKTAALW---TRLYASETSNGQKGNVEESDLYGIDHDLIDEFE----SQGF----EKDKIVEVLRRLGVK  196 (215)
T ss_dssp             HHHHHCHHHHHHHHHHH---HHHSSCCCSCCSSCCCSCSSCCCCSHHHHHHHH----HHTC----CHHHHHHHHHHSCCS
T ss_pred             HHHHHCHHHHHHHHHHH---HHHhccCCCcccccchhhhhhccccHHHHHHHH----HcCC----CHHHHHHHHHHcCCC
Confidence            6665    344444444   6666654321000000000   00012222221    3443    368899999999999


Q ss_pred             hHH
Q psy17486        149 SHD  151 (172)
Q Consensus       149 ~~~  151 (172)
                      +..
T Consensus       197 ~~~  199 (215)
T 1tte_A          197 SLD  199 (215)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            865

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=94.51  E-value=0.025  Score=44.28  Aligned_cols=122  Identities=24%  Similarity=0.300  Sum_probs=56.8

Q ss_pred             CCcEEEEcCCCCCCCC-C---ee--EEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHH
Q psy17486          2 VDTTVKFVTKIWHPNI-S---SV--KFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA   75 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~p-P---~v--~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~   75 (172)
                      ..|+|+|+++.|+.+. +   .|  ..+..-|.|..+-  ..|               -.-|.++..-....+|.++..+
T Consensus        85 ~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti--~~V---------------L~sI~sLL~~Pnp~dPln~eaa  147 (216)
T 2pwq_A           85 NPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTI--RTA---------------LLSIQALLSDPQPDDPQDAEVA  147 (216)
T ss_dssp             SCCEEEESSCCCBTTBCTTTCBBCCHHHHHHCCTTCCH--HHH---------------HHHHHHHHHSCCTTSCSCHHHH
T ss_pred             CCCcccccCCCcCCCCcCCCCEEEchhhcccCCCCCcH--HHH---------------HHHHHHHHhCCCCCCcccHHHH
Confidence            4689999999987654 2   11  1223447776431  122               2334556566778888999999


Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHH
Q psy17486         76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVA  155 (172)
Q Consensus        76 ~aa~~~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~a  155 (172)
                      .....-++.+..-   ||+||++||......      ..+...+   +-..++.    +..+.+..|...|++++.|+..
T Consensus       148 ~~~~~d~~~f~~~---ar~~t~~ya~~~~~~------~~~~~v~---~~~~mgf----~~~~~~~al~~~~~~~~~~~~~  211 (216)
T 2pwq_A          148 KMYKENHALFVKT---ASVWTKTFATGPKEE------PREVIIK---KITEMGF----SEDQAKNALIKANWNETLALNT  211 (216)
T ss_dssp             HHHHHCHHHHHHH---HHHHHHHHSCCC----------------------------------------------------
T ss_pred             HHHHHCHHHHHHH---HHHHHHHhcCCCccc------chhhHHH---HHHHcCC----CHHHHHHHHHHcCCchHHHHHH
Confidence            9988888888878   999999999743321      0011111   1123443    3467788999999999998776


Q ss_pred             H
Q psy17486        156 L  156 (172)
Q Consensus       156 L  156 (172)
                      |
T Consensus       212 l  212 (216)
T 2pwq_A          212 L  212 (216)
T ss_dssp             -
T ss_pred             H
Confidence            5

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.19  E-value=0.094  Score=33.36  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=30.2

Q ss_pred             HHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        137 SKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       137 ~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      .+|..++.. |-++..|...|..++|+++.|+..++
T Consensus        19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff   54 (66)
T 2dzl_A           19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFF   54 (66)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            567788765 77999999999999999999998765

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.61  E-value=0.2  Score=31.96  Aligned_cols=39  Identities=8%  Similarity=0.202  Sum_probs=35.1

Q ss_pred             CchHHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        133 PDFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       133 ~~~~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      .++.+.++.|.+|  .++...+...|.+++++++.|++.||
T Consensus        16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL   56 (67)
T 2dhy_A           16 LEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLL   56 (67)
T ss_dssp             CCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3578999999999  66778889999999999999999997

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=92.27  E-value=0.23  Score=31.43  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=31.1

Q ss_pred             HHHHHHHHH-cCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLTD-MGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~-~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ...|..|++ -|.....+..||...+||++.|+++|.
T Consensus        10 ~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr   46 (64)
T 2cp9_A           10 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH   46 (64)
T ss_dssp             CHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            466778865 488999999999999999999999984

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=88.98  E-value=0.31  Score=45.23  Aligned_cols=37  Identities=32%  Similarity=0.428  Sum_probs=34.7

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      .+.+..+.+|||++.+++.||...+.++++|++.|++
T Consensus       721 ~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs  757 (854)
T 3ihp_A          721 EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS  757 (854)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence            6789999999999999999999999999999999874

>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}

Probab=85.29  E-value=0.91  Score=33.71  Aligned_cols=36  Identities=22%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHcC-CChHHHHHHHHhcCCChHHHHHHh
Q psy17486        135 FDSKIQRLTDMG-VMSHDARVALSTYNWELERATEAI  170 (172)
Q Consensus       135 ~~~kv~~l~~~g-f~~~~a~~aLs~~~W~~~~a~~~l  170 (172)
                      ..+|+..|.+.| |++++++.||..++.|++.|+-.|
T Consensus       102 R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL  138 (162)
T 4dbg_B          102 RRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL  138 (162)
T ss_dssp             HHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence            467888899999 566899999999999999998655

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}

Probab=85.15  E-value=1.4  Score=30.21  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=29.9

Q ss_pred             HHHHHHH-HHcCCChHHHHHHHHhcCCChHHHHHHh
Q psy17486        136 DSKIQRL-TDMGVMSHDARVALSTYNWELERATEAI  170 (172)
Q Consensus       136 ~~kv~~l-~~~gf~~~~a~~aLs~~~W~~~~a~~~l  170 (172)
                      .+.|+.+ ...|.++..|+.||..+++|+=.|+-.|
T Consensus        66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L  101 (102)
T 1tr8_A           66 EDDIELVMNQTGASREDATRALQETGGDLAEAIMRL  101 (102)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence            5567666 4679999999999999999999998765

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.83  E-value=0.45  Score=33.38  Aligned_cols=20  Identities=0%  Similarity=0.169  Sum_probs=16.4

Q ss_pred             cEEEEcCCCCCCCCCeeEEec
Q psy17486          4 TTVKFVTKIWHPNISSVKFLT   24 (172)
Q Consensus         4 ~~i~F~p~~YP~~pP~v~F~t   24 (172)
                      ..|.| |++||..||.+...+
T Consensus        59 L~v~~-p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           59 LKFTY-SEKYPDEAPLYEIFS   78 (128)
T ss_dssp             EEEEC-CSSTTTSCCEEEEEE
T ss_pred             EEEEe-CCCCCCCCceEEEEc
Confidence            45777 999999999987654

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=84.65  E-value=0.49  Score=33.17  Aligned_cols=21  Identities=0%  Similarity=0.121  Sum_probs=17.4

Q ss_pred             cEEEEcCCCCCCCCCeeEEecc
Q psy17486          4 TTVKFVTKIWHPNISSVKFLTK   25 (172)
Q Consensus         4 ~~i~F~p~~YP~~pP~v~F~t~   25 (172)
                      ..|.| |++||..+|.+...+.
T Consensus        63 L~~~~-p~~YP~~~P~i~~~~~   83 (128)
T 2day_A           63 LVLQV-PAEYPHEVPQISIRNP   83 (128)
T ss_dssp             EEEEE-CSSTTSSCCEEEEEEE
T ss_pred             EEEEc-CCCCCCCCCCeEEEcC
Confidence            45777 9999999999987763

>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}

Probab=84.04  E-value=2.4  Score=26.65  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=29.4

Q ss_pred             chHHHHHHHH-HcCCChHHHHHHHHhcCCChHHHH
Q psy17486        134 DFDSKIQRLT-DMGVMSHDARVALSTYNWELERAT  167 (172)
Q Consensus       134 ~~~~kv~~l~-~~gf~~~~a~~aLs~~~W~~~~a~  167 (172)
                      +++..+..++ ..|-+...|++-|..++||+.+|+
T Consensus        16 dmdavls~fvrstgaepgLaRDlleGKnWDl~AAL   50 (73)
T 2l2d_A           16 DMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAAL   50 (73)
T ss_dssp             CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcchhHHhhccCCccHhHHh
Confidence            4677777775 558999999999999999999998

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=83.95  E-value=0.56  Score=33.33  Aligned_cols=20  Identities=10%  Similarity=0.235  Sum_probs=16.7

Q ss_pred             cEEEEcCCCCCCCCCeeEEec
Q psy17486          4 TTVKFVTKIWHPNISSVKFLT   24 (172)
Q Consensus         4 ~~i~F~p~~YP~~pP~v~F~t   24 (172)
                      ..|.| |++||..||.+.+.+
T Consensus        66 L~~~~-p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           66 LHFAM-TPMYPYTAPEIEFKN   85 (138)
T ss_dssp             EEEEC-CSSTTSSCCEEEEEC
T ss_pred             EEEEC-CCCCCCCCCeEEEec
Confidence            45677 999999999998765

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=83.68  E-value=0.64  Score=34.17  Aligned_cols=25  Identities=68%  Similarity=1.169  Sum_probs=20.2

Q ss_pred             HHhhhcCchhhHHHHHHHHHHhcCC
Q psy17486        104 AKQYKENPEMFTLTARHWTNVYAGG  128 (172)
Q Consensus       104 ~~~~~~~~~~~~~~a~~w~~~~~~~  128 (172)
                      +..++.++..|.++||+||++||++
T Consensus       135 a~~~~~~~~~f~~~a~~~~~~~a~~  159 (159)
T 2bep_A          135 ANQYKQNPEMFKQTARLWAHVYAGA  159 (159)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHCHHHHHHHHHHHHHHhhcC
Confidence            4456667778899999999999975

>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3

Probab=83.49  E-value=2.7  Score=25.86  Aligned_cols=36  Identities=19%  Similarity=0.376  Sum_probs=28.9

Q ss_pred             hHHHHHHHH-HcCCChHHHHHHHHhcCCChHHHHHHh
Q psy17486        135 FDSKIQRLT-DMGVMSHDARVALSTYNWELERATEAI  170 (172)
Q Consensus       135 ~~~kv~~l~-~~gf~~~~a~~aLs~~~W~~~~a~~~l  170 (172)
                      -.+.|..+. .-|.+..=+...|...+||.+.|+..+
T Consensus         7 q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F   43 (59)
T 1oai_A            7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF   43 (59)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            355566664 448899999999999999999999765

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=82.41  E-value=0.78  Score=33.40  Aligned_cols=24  Identities=42%  Similarity=0.674  Sum_probs=20.2

Q ss_pred             HHhhhcCchhhHHHHHHHHHHhcC
Q psy17486        104 AKQYKENPEMFTLTARHWTNVYAG  127 (172)
Q Consensus       104 ~~~~~~~~~~~~~~a~~w~~~~~~  127 (172)
                      +..+++++..|.++||+||++||+
T Consensus       127 a~~~~~d~~~f~~~ar~~~~~ya~  150 (151)
T 4gpr_A          127 ANVLRANKKQFEDTAREWTRMYAR  150 (151)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCHHHHHHHHHHHHHHhcC
Confidence            455677788889999999999997

>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A

Probab=81.35  E-value=2.4  Score=25.94  Aligned_cols=36  Identities=14%  Similarity=0.193  Sum_probs=28.5

Q ss_pred             hHHHHHHHH-HcCCChHHHHHHHHhcCCChHHHHHHh
Q psy17486        135 FDSKIQRLT-DMGVMSHDARVALSTYNWELERATEAI  170 (172)
Q Consensus       135 ~~~kv~~l~-~~gf~~~~a~~aLs~~~W~~~~a~~~l  170 (172)
                      -.+.|..+. .-|.+.+=+...|+..+||.+.|+..+
T Consensus         6 q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F   42 (57)
T 2jp7_A            6 QLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGF   42 (57)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            345566664 458899999999999999999998764

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=80.78  E-value=3.1  Score=30.76  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             HhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHH
Q psy17486        105 KQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQR  141 (172)
Q Consensus       105 ~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~  141 (172)
                      ..+..++..|.+.||+||++||+.... .+.+.+++.
T Consensus       132 ~~~~~~~~~y~~~~r~~~~~~a~~~~~-~~~~~~~~~  167 (169)
T 1yh2_A          132 SEFKYNKPAFLKNARQWTEKHARQKQK-ADEEEMLDN  167 (169)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHSCCC------------
T ss_pred             HHHHhhHHHHHHHHHHHHHHHcccccc-CCHHHHhhc
Confidence            345556677799999999999997532 234444443

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=80.60  E-value=1  Score=32.69  Aligned_cols=24  Identities=42%  Similarity=0.721  Sum_probs=19.9

Q ss_pred             HHhhhcCchhhHHHHHHHHHHhcC
Q psy17486        104 AKQYKENPEMFTLTARHWTNVYAG  127 (172)
Q Consensus       104 ~~~~~~~~~~~~~~a~~w~~~~~~  127 (172)
                      +..++.++..|.+.||+||++||+
T Consensus       126 a~~~~~d~~~f~~~a~~~~~~~a~  149 (149)
T 1fxt_A          126 AQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCHHHHHHHHHHHHHHhcC
Confidence            445667788889999999999985

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=80.60  E-value=4.8  Score=29.20  Aligned_cols=21  Identities=10%  Similarity=-0.089  Sum_probs=17.2

Q ss_pred             CcEEEEcCCCCCCCCCeeEEec
Q psy17486          3 DTTVKFVTKIWHPNISSVKFLT   24 (172)
Q Consensus         3 ~~~i~F~p~~YP~~pP~v~F~t   24 (172)
                      ...|.| |.+||..+|.+...+
T Consensus        78 ~L~v~l-P~~YP~~~P~i~l~~   98 (154)
T 2daw_A           78 DLQVTM-PHSYPYLALQLFGRS   98 (154)
T ss_dssp             EEEEEE-CSSTTSSCCEEEEEC
T ss_pred             EEEEEc-CCCCCCCCCcEEEEe
Confidence            456778 999999999998665

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=80.58  E-value=0.78  Score=33.54  Aligned_cols=24  Identities=42%  Similarity=0.560  Sum_probs=18.5

Q ss_pred             hhhcCchhhHHHHHHHHHHhcCCC
Q psy17486        106 QYKENPEMFTLTARHWTNVYAGGP  129 (172)
Q Consensus       106 ~~~~~~~~~~~~a~~w~~~~~~~~  129 (172)
                      .++.++..|.+.||+||++||+++
T Consensus       130 ~~~~d~~~f~~~ar~~~~~~a~~~  153 (154)
T 2c2v_B          130 QWKTNEAQAIETARAWTRLYAMNN  153 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHCHHHHHHHHHHHHHHhcCCC
Confidence            344455567899999999999874

>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A

Probab=80.06  E-value=1.3  Score=26.90  Aligned_cols=38  Identities=8%  Similarity=0.075  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ..+.++.|.+|  ++|.+-....|..++++.+.|++.||.
T Consensus        12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq   51 (54)
T 1p3q_Q           12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred             HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            35667777777  778888899999999999999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	7e-23
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	6e-22
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	2e-21
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	8e-21
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	9e-21
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	1e-20
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-20
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	4e-17
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	4e-17
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	7e-17
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-16
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-16
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	1e-15
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	1e-15
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	3e-15
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	3e-15
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	8e-15
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	1e-14
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	7e-14
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	2e-13
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	2e-13
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	2e-13
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	2e-13
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	4e-13
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	4e-13
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	2e-12
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	6e-12
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	1e-11
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	2e-11
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	6e-09
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	2e-08
d1oqya1	41	a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Hum	1e-07
d1wgna_	63	a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1	3e-05
d1wiva_	73	a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress	5e-04
d1wjia_	63	a.5.2.1 (A:) Tudor domain containing protein 3, TD	0.001
d3e46a1	42	a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E	0.001
d1vg5a_	73	a.5.2.1 (A:) Rhomboid family protein At3g58460 {Th	0.002

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 86.8 bits (214), Expect = 7e-23
 Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
             +  +      V F T+I+H NI+S  G ICLDILKD W+ A+T+  VLLS+ +L+   
Sbjct: 56  TFSPDYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDC 114

Query: 68  EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
            P DP    +A QY  N       AR WT  YA
Sbjct: 115 NPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 147

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.5 bits (208), Expect = 6e-22
 Identities = 72/83 (86%), Positives = 77/83 (92%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
            V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDAVVA
Sbjct: 72  KVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 131

Query: 79  KQYKENPEMFTLTARHWTNVYAG 101
            QYK+NPEMF  TAR W +VYAG
Sbjct: 132 NQYKQNPEMFKQTARLWAHVYAG 154

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 83.3 bits (205), Expect = 2e-21
 Identities = 50/81 (61%), Positives = 62/81 (76%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           +KF+TKIWHPNISS TGAICLDILK +W+ A+T+RT LLS+QA++A   P DPQDA VAK
Sbjct: 80  MKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAK 139

Query: 80  QYKENPEMFTLTARHWTNVYA 100
              EN  +F  TA+ WT  +A
Sbjct: 140 MMIENHPLFVQTAKLWTETFA 160

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 8e-21
 Identities = 46/93 (49%), Positives = 63/93 (67%), Gaps = 1/93 (1%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
           F+ + +      V+F+TKI+HPN+    G ICLDILKD+W+ A+ +RTVLLS+QAL++A 
Sbjct: 56  FLPEEYPMAAPKVRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAP 114

Query: 68  EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
            PDDP    VA+Q+K N      TAR WT +YA
Sbjct: 115 NPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 147

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 81.4 bits (200), Expect = 9e-21
 Identities = 48/93 (51%), Positives = 65/93 (69%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
            V   +      ++F TK++HPNISSVTGAICLDILK+ W+  +TL++ L+SLQAL+ + 
Sbjct: 56  EVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSP 115

Query: 68  EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
           EP+DPQDA VA+ Y  + E F  TA  WT +YA
Sbjct: 116 EPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 81.0 bits (199), Expect = 1e-20
 Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
            V F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDDP    +A
Sbjct: 66  KVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 124

Query: 79  KQYKENPEMFTLTARHWTNVYA 100
           + YK + E +   AR WT  YA
Sbjct: 125 RIYKTDRERYNQLAREWTQKYA 146

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 80.6 bits (198), Expect = 2e-20
 Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
            V+FLTKI+HPNI    G ICLD+LK  W+ A+ +RTVLLS+QAL+A+  P+DP    VA
Sbjct: 68  KVRFLTKIYHPNIDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVA 126

Query: 79  KQYKENPEMFTLTARHWTNVYA 100
           + + +N +     AR WT +YA
Sbjct: 127 EDWIKNEQGAKAKAREWTKLYA 148

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 4e-17
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
            + K +  +     FLTKI+HPN+ +  G IC+++LK  W A + +R VLL+++ L+   
Sbjct: 60  LLGKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHP 118

Query: 68  EPDDPQDAVVAKQYKENPEMFTLTARHWTNVY 99
            P+   +    +   EN E +   AR  T ++
Sbjct: 119 NPESALNEEAGRLLLENYEEYAARARLLTEIH 150

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 4e-17
 Identities = 22/93 (23%), Positives = 35/93 (37%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
                +      +KF TKI+HPN+          I  + W        VL +L  L+   
Sbjct: 54  SFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRP 113

Query: 68  EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
              +P    +A    +NPE+F   A  +T  + 
Sbjct: 114 NIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 146

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 71.3 bits (174), Expect = 7e-17
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 14/91 (15%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKD-------------QWAAAMTLRTVLLSLQALMA 65
            +KF+++IWHPNI    G +C+ IL D             +W    T+ T+LLS+ +++ 
Sbjct: 66  KMKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 124

Query: 66  AAEPDDPQDAVVAKQYKENPEMFTLTARHWT 96
               + P +   AK  +EN   F        
Sbjct: 125 DPNFESPANVDAAKMQRENYAEFKKKVAQCV 155

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 70.5 bits (172), Expect = 1e-16
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           VKFL++++HPN+ +  G ICLDIL+++W     + ++L S+Q+L     P  P +   A 
Sbjct: 69  VKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAAT 127

Query: 80  QYKENPEMFTLTARHWTNVYA 100
            +K++   +    +       
Sbjct: 128 LFKDHKSQYVKRVKETVEKSW 148

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 69.5 bits (169), Expect = 5e-16
 Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 14/102 (13%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLR 54
              K +  +   + F   I HPNI    G +C+ IL             +++W+   ++ 
Sbjct: 58  EFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVE 116

Query: 55  TVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 96
            +LLS+ ++++    +   +      +++N   F    +   
Sbjct: 117 KILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 158

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 1e-15
 Identities = 25/81 (30%), Positives = 39/81 (48%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
            + F TKI+HPNI          I  + W  A     V+ SL AL+   +P+ P  A +A
Sbjct: 64  KITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLA 123

Query: 79  KQYKENPEMFTLTARHWTNVY 99
           ++Y ++ + F   A  +T  Y
Sbjct: 124 EEYSKDRKKFCKNAEEFTKKY 144

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 1e-15
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
                +  N  +VKFLT  +HPN+ +  G I LDILK++W+A   +RT+LLS+Q+L+   
Sbjct: 55  EFPSGYPYNAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEP 113

Query: 68  EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
             D P +   A+ +K NP  F    +   +   
Sbjct: 114 NIDSPLNTHAAELWK-NPTAFKKYLQETYSKQV 145

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 67.1 bits (163), Expect = 3e-15
 Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
             T+ +     +VKF++K++HPN+ +  G+ICLDIL+++W+    +  +L S+Q+L+   
Sbjct: 57  EFTEEYPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEP 115

Query: 68  EPDDPQDAVVAKQYKENPEMFTLTARHWT 96
            P+ P +++ A+ Y+EN   +    +   
Sbjct: 116 NPNSPANSLAAQLYQENRREYEKRVQQIV 144

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 67.1 bits (163), Expect = 3e-15
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 3/102 (2%)

Query: 13  WHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRT-VLLSLQALMAAAEPDD 71
           +     S+ F  +I HPN+   +G++CLD++   W     L     + L  L+    P D
Sbjct: 55  YPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSD 114

Query: 72  PQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEM 113
           P +   A     +   F    R   + +A    ++  E+   
Sbjct: 115 PLNVQAAHLLHADRVGFDALLREHVSTHA--TPQKALESIPE 154

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 8e-15
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
              + +     S+  +T       ++       D   D W  A ++ T+L  L + M   
Sbjct: 55  IFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEK 114

Query: 68  EPDDP---QDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYK 108
            P            +Q       F L  + +  ++  VV ++ K
Sbjct: 115 GPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVV-EEIK 157

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 65.5 bits (159), Expect = 1e-14
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 20  VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
           VK  T ++HPNI  + G +CL+IL++ W   +T+ +++  LQ L     P+DP +   A+
Sbjct: 67  VKCETMVYHPNID-LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 125

Query: 80  QYKENPEMFTLTARHWT 96
             + N  +F    +   
Sbjct: 126 VLQNNRRLFEQNVQRSM 142

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 7e-14
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKD----QWAAAMTLRTVLLSLQAL 63
            + + +      ++FLT I+HPNI S  G ICLD+LK      W  ++ + TVL S+Q L
Sbjct: 56  IIPERYPFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLL 114

Query: 64  MAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
           M+   PDDP  A ++ ++K N   F   AR WT  +A
Sbjct: 115 MSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 2e-13
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 8   FVTKIWHPNISSVKFLTKIW--HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 65
             +  +  +   V F  +    HP++ S  G ICL IL + W+ A+++++V LS+ ++++
Sbjct: 59  KFSSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 117

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 2e-13
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 1   MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLL 58
           +   T+ F ++  +     VKF+T  +HPN+   TG  C+D L   ++W    TL ++LL
Sbjct: 52  VFQLTIHFTSEYNY-APPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILL 110

Query: 59  SLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHW 95
           +LQ +++    ++P +   A+   ++  ++    R +
Sbjct: 111 ALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF 147

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 2e-13
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 14  HPNIS-SVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALMAAAE- 68
           +P     V+F+TKI    ++S  G +    + +L  +W  + +++ VL  L+ LM + E 
Sbjct: 68  YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKEN 126

Query: 69  PDDPQDA 75
              PQ  
Sbjct: 127 MKLPQPP 133

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 61.3 bits (148), Expect = 4e-13
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAV 76
             KF   ++HPN+      + L IL++   W  A+T++ +LL +Q L+      DP  A 
Sbjct: 72  KCKFEPPLFHPNVYPSGT-VSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAE 130

Query: 77  VAKQYKENPEMFTLTARHWTNVYA 100
               Y +N   +    R     +A
Sbjct: 131 AYTIYCQNRVEYEKRVRAQAKKFA 154

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 60.1 bits (145), Expect = 4e-13
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 65
                +      V FL K          G ICL +L D +  ++++  ++LS+ ++++
Sbjct: 52  IFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 109

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 59.4 bits (143), Expect = 2e-12
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
                +      VKF T  WHPN+   +G ICLDILK+ W A+  +RT+LLSLQ+L+   
Sbjct: 63  EFPSDYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEP 121

Query: 68  EPDDPQDAVVAKQYKENPE 86
               P +A  A  +    E
Sbjct: 122 NNASPLNAQAADMWSNQTE 140

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 6e-12
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 14/71 (19%)

Query: 8   FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLR 54
              K +      +KF+T+IWHPN+    G +C+ IL             +++W    T+ 
Sbjct: 54  TFPKDYPLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVE 112

Query: 55  TVLLSLQALMA 65
           T+++S+ +++A
Sbjct: 113 TIMISVISMLA 123

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 57.0 bits (137), Expect = 1e-11
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 19  SVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQ 73
            V F++KI  P ++  TG +  D      W  A T+ T+LL L+  MA       +
Sbjct: 73  KVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLR 128

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 5   TVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALM 64
            +    + +  N  S           I S  G I L IL     AAM L  V+  L +L+
Sbjct: 90  FISINLENFDMNTISSSL---PIQEYIDS-NGWIALPILHCWDPAAMNLIMVVQELMSLL 145

Query: 65  AAAEPDD 71
               P D
Sbjct: 146 -HEPPQD 151

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 6e-09
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 11/75 (14%)

Query: 5   TVKFVTKIW----HPNISSVKFLT------KIWHPNISSVTGAICLDILKDQWAAAMTLR 54
           T      +W    +P    + F+            ++ +  G I L  L +       L 
Sbjct: 65  TYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDA-NGKIYLPYLHEWKHPQSDLL 123

Query: 55  TVLLSLQALMAAAEP 69
            ++  +  +     P
Sbjct: 124 GLIQVMIVVFGDEPP 138

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-08
 Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 6   VKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALM 64
             F           V+ +  +         GA+C+++L K  W++A ++ +V++ + A +
Sbjct: 72  FSFKDNFPFDPPF-VRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATL 130

Query: 65  AAAEPDDPQDAVVAK-QYKENPEMFTLTAR 93
              +      A   +       + +    +
Sbjct: 131 VKGKARVQFGANKNQYNLARAQQSYNSIVQ 160

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (104), Expect = 1e-07
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 133 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
            ++++ +  +  MG        AL        RA E + T
Sbjct: 2   SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 41

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (89), Expect = 3e-05
 Identities = 7/48 (14%), Positives = 18/48 (37%)

Query: 125 YAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
           Y+     +P     ++ + +MG        A+      +E+  + +F 
Sbjct: 9   YSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA 56

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.2 bits (81), Expect = 5e-04
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
            S +  L   G     AR AL     ++E+AT+ +F 
Sbjct: 30  QSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN 66

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
           +  ++ +T+MG     +R AL      LE A   + T
Sbjct: 10  EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT 46

>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 0.001
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 132 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171
           +P++  KI+ L   G   +   VALS+ +W++E ATE + 
Sbjct: 3   SPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLL 42

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.4 bits (76), Expect = 0.002
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 129 PSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
             +    + +IQ+L  MG       VAL+  + +L  A E + +
Sbjct: 23  QGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	99.97
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.96
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	99.96
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	99.96
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.96
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	99.96
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	99.96
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.96
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.95
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	99.95
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.95
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.95
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.95
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.95
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.94
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	99.94
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.85
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	99.83
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.83
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.83
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.82
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	99.82
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.8
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.44
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.35
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	99.2
d3e46a1	42	Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal	99.19
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	99.04
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	98.61
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	98.61
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	98.57
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	98.37
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	98.13
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.82
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	97.8
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	97.73
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	97.73
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	97.58
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	97.54
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	97.45
d1oqya2	44	DNA repair protein Hhr23a {Human (Homo sapiens) [T	97.28
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	96.34
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	96.07
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	95.65
d2k0bx1	52	Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [Tax	95.31
d1vega_	83	NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculu	95.11
d1ttea1	55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	94.14
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	93.65
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	93.64
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	93.61
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	93.09
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	92.12
d2cp8a1	41	Migration-inducing protein 19 NBR1 {Human (Homo sa	91.43
d2dkla1	72	Trinucleotide repeat containing 6c protein, TNRC6C	89.47
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	88.25
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	85.96
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	85.17
d1oaia_	59	FG-binding, C-terminal domain of TAP {Human (Homo	84.11
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	83.42
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	82.87

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=7.5e-32  Score=202.46  Aligned_cols=99  Identities=75%  Similarity=1.139  Sum_probs=92.5

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||++.+|.||++++.+.|+|++||.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        56 f~~~i~f-p~~YP~~pP~v~f~t~i~Hpni~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~  134 (154)
T d2bepa1          56 YQLEIKI-PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY  134 (154)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             eEEEEec-cccccCCCCcceecccCCCCCeeCCCCccccccccccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Confidence            4678999 999999999999999999999998799999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~  101 (172)
                      ++|++.|.++||+||++||+
T Consensus       135 ~~~~~~f~~~a~~~t~k~A~  154 (154)
T d2bepa1         135 KQNPEMFKQTARLWAHVYAG  154 (154)
T ss_dssp             HHCHHHHHHHHHHHHHHHSC
T ss_pred             HHCHHHHHHHHHHHHHHhcC
Confidence            99999997777777777764

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=99.97  E-value=3.5e-31  Score=197.46  Aligned_cols=97  Identities=40%  Similarity=0.664  Sum_probs=92.1

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      ++..|.| |++||+.||+|+|.|+||||||++ +|.|||+++.+.|+|.++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        51 f~~~i~~-p~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~  128 (148)
T d1y6la_          51 FFLDITF-SPDYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY  128 (148)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             EEEEEec-CcccCCCCcEEEEeCCCcCceECC-CCeEEEEecCCcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHH
Confidence            4678888 999999999999999999999996 89999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|+++|.++||+||++||
T Consensus       129 ~~d~~~f~~~ar~~~~k~A  147 (148)
T d1y6la_         129 MTNRAEHDRMARQWTKRYA  147 (148)
T ss_dssp             HHCHHHHHHHHHHHHHHHC
T ss_pred             HHCHHHHHHHHHHHHHHhC
Confidence            9999999888888888876

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=99.96  E-value=1.2e-30  Score=194.83  Aligned_cols=98  Identities=48%  Similarity=0.803  Sum_probs=92.9

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+..+|.+|++++.++|+|++||.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        51 f~~~i~f-p~~YP~~pP~v~f~t~i~HpnI~~~~~~~~~~~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~  129 (149)
T d1fzya_          51 FVVDIEV-PMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY  129 (149)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCTTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             eeEEEEe-cCCcccCCcEEEecCCCcCCcccCCcceeechhhcccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            4678899 999999999999999999999998789999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|+++|.++||+||++||
T Consensus       130 ~~~~~~f~~~~~~~~~k~A  148 (149)
T d1fzya_         130 LRDRESFNKTAALWTRLYA  148 (149)
T ss_dssp             HHCHHHHHHHHHHHHHHHC
T ss_pred             HHCHHHHHHHHHHHHHHhc
Confidence            9999999888888888876

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.96  E-value=1.3e-30  Score=197.14  Aligned_cols=99  Identities=52%  Similarity=0.822  Sum_probs=93.9

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+|+||||+..+|.||++++.+.|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        63 f~~~i~f-p~~YP~~pP~V~F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~  141 (161)
T d2f4za1          63 FTLDIVI-PPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM  141 (161)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             EEEEEec-cCCCCCCCcEEEecCCCCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            4578899 999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~  101 (172)
                      ++|+++|.++||+||++||+
T Consensus       142 ~~d~~~y~~~v~~~t~~~a~  161 (161)
T d2f4za1         142 IENHPLFVQTAKLWTETFAK  161 (161)
T ss_dssp             HHCHHHHHHHHHHHHHHHCC
T ss_pred             HHCHHHHHHHHHHHHHHHhC
Confidence            99999998888888888873

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=99.96  E-value=2.1e-30  Score=193.67  Aligned_cols=97  Identities=28%  Similarity=0.530  Sum_probs=89.9

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccC-CCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l-~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+. +|.||+++| .++|+|.+||.+||.+|+++|.+|++++|+|.+|+++
T Consensus        49 f~~~i~f-p~~YP~~pP~v~f~t~i~HpnI~~-~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~  126 (150)
T d1wzva1          49 FNLRISF-PPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADL  126 (150)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHH
T ss_pred             eeEEEec-CcCCccCCceeeccCCCCcceECC-CCCcccccccccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHH
Confidence            4678899 999999999999999999999995 999999999 5689999999999999999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t~~~a  100 (172)
                      |++|++.|.++||+||++||
T Consensus       127 ~~~d~~~f~~~a~~~~~kya  146 (150)
T d1wzva1         127 LTQNPELFRKNAEEFTLRFG  146 (150)
T ss_dssp             HHHCHHHHHHHHHHHHHHHC
T ss_pred             HHHCHHHHHHHHHHHHHHhc
Confidence            99999999777777777766

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=99.96  E-value=3.1e-30  Score=191.90  Aligned_cols=97  Identities=42%  Similarity=0.752  Sum_probs=91.7

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+. +|.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.+++++|
T Consensus        50 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnV~~-~G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~  127 (147)
T d1z2ua1          50 FFLTIHF-PTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY  127 (147)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             eEEEEec-CcCCCCCCceEEEecCCceeeECC-CCCEeeehhcccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHH
Confidence            4678899 999999999999999999999994 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|++.|.++||+||++||
T Consensus       128 ~~~~~~f~~~~~~~~~k~A  146 (147)
T d1z2ua1         128 KTDRERYNQLAREWTQKYA  146 (147)
T ss_dssp             HHCHHHHHHHHHHHHHHHC
T ss_pred             HHCHHHHHHHHHHHHHHhC
Confidence            9999999888888887776

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=99.96  E-value=2.7e-30  Score=192.91  Aligned_cols=97  Identities=46%  Similarity=0.784  Sum_probs=90.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+ .+|.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        51 f~~~i~f-p~~YP~~pP~v~f~t~i~HPni~-~~G~icl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~  128 (149)
T d1j7db_          51 FKLELFL-PEEYPMAAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQW  128 (149)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECSCCCBTTBC-TTCBBCCGGGTTSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHH
T ss_pred             EEEEEec-CCcccCCCceeeecCCCCCceEC-CCCcEehHHhcCCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Confidence            4678899 99999999999999999999999 599999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      ++|++.|.++||+||++||
T Consensus       129 ~~~~~~f~~~ar~~~~kyA  147 (149)
T d1j7db_         129 KTNEAQAIETARAWTRLYA  147 (149)
T ss_dssp             HHCHHHHHHHHHHHHHHHS
T ss_pred             HHCHHHHHHHHHHHHHHhc
Confidence            9999999777777777765

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=99.96  E-value=2.8e-30  Score=193.52  Aligned_cols=98  Identities=42%  Similarity=0.747  Sum_probs=92.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      ++.+|.| |++||++||+|+|+|+||||||+. +|.||++++..+|+|.++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        52 f~~~i~f-p~~YP~~pP~v~F~t~i~HPnI~~-~G~icl~~~~~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~  129 (152)
T d1jata_          52 FELELYL-PDDYPMEAPKVRFLTKIYHPNIDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDW  129 (152)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECSCCCBTTBCT-TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHH
T ss_pred             EEEEEec-CccCCCCCcEEEecCCCCCCcCCC-CCCeeeccccccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence            5678999 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~  101 (172)
                      .+|+++|.++||+||++||.
T Consensus       130 ~~d~~~f~~~~r~~~~~~a~  149 (152)
T d1jata_         130 IKNEQGAKAKAREWTKLYAK  149 (152)
T ss_dssp             HHCHHHHHHHHHHHHHHHSE
T ss_pred             HHCHHHHHHHHHHHHHHHhc
Confidence            99999998888888888874

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=99.96  E-value=8.9e-30  Score=190.04  Aligned_cols=96  Identities=28%  Similarity=0.649  Sum_probs=91.6

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      ++.+|.| |++||+.||+|+|.|+||||||+. +|.||+++|.+.|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        52 f~~~i~~-p~~YP~~pP~v~f~t~i~HPnI~~-~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~  129 (149)
T d1z3da1          52 FKLSLEF-TEEYPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLY  129 (149)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCT-TCBBCCGGGTTSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHH
T ss_pred             EEEEEEe-cCcCCCCCcEEEecCcccceeEcC-CCCEEeccccccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHH
Confidence            5678889 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVY   99 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~   99 (172)
                      ++|+++|.++||+||++.
T Consensus       130 ~~~~~~f~~~vr~~~~ks  147 (149)
T d1z3da1         130 QENRREYEKRVQQIVEQS  147 (149)
T ss_dssp             HHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999988863

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=99.96  E-value=5.1e-30  Score=191.90  Aligned_cols=96  Identities=29%  Similarity=0.549  Sum_probs=90.7

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+. +|.||++++.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|
T Consensus        55 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnI~~-~G~ic~~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~  132 (151)
T d1zdna1          55 FRMKLLL-GKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLL  132 (151)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCT-TSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHH
T ss_pred             eeeeeec-CCCCCCCCceeecCCCCCCceecC-CCCcccccccccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Confidence            4578888 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVY   99 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~   99 (172)
                      ++|+++|.++||+||++|
T Consensus       133 ~~~~~~f~~~ar~~~~~~  150 (151)
T d1zdna1         133 LENYEEYAARARLLTEIH  150 (151)
T ss_dssp             HHCHHHHHHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHhh
Confidence            999999988888877776

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=99.96  E-value=9.8e-30  Score=190.57  Aligned_cols=98  Identities=39%  Similarity=0.671  Sum_probs=91.6

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC----CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK----DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV   77 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~----~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~a   77 (172)
                      +..+|.| |++||++||+|+|.|+||||||++ +|.||+++|.    +.|+|++++.+||.+|+++|.+|++++|+|.+|
T Consensus        51 f~~~i~~-p~~YP~~pP~v~f~t~i~HPnV~~-~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~ea  128 (154)
T d1yh2a1          51 FKLEVII-PERYPFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADI  128 (154)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred             EEEEEec-CccccCCCceeeccCCCCcCCcCC-CCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHH
Confidence            5678888 999999999999999999999995 9999999995    579999999999999999999999999999999


Q ss_pred             HHHHhhCHHHHHHHHHHHHHHHHH
Q psy17486         78 AKQYKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        78 a~~~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      +.+|++|++.|.++||+||++||+
T Consensus       129 a~~~~~~~~~f~~~~r~~~~k~a~  152 (154)
T d1yh2a1         129 SSEFKYNKPAFLKNARQWTEKHAR  152 (154)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHCHHHHHHHHHHHHHHHhc
Confidence            999999999998888888888874

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=99.96  E-value=9.6e-30  Score=189.44  Aligned_cols=96  Identities=34%  Similarity=0.586  Sum_probs=90.3

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||++++.++|+|++||.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        50 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnV~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~  127 (146)
T d1i7ka_          50 YKLSLEF-PSGYPYNAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW  127 (146)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCSTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT
T ss_pred             EEEEEEe-cCCCCcCCceeeecCCCCcccCCC-CCccccccccccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHh
Confidence            5678899 999999999999999999999995 89999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      + |+++|.++|++++.+||
T Consensus       128 ~-n~~~f~k~~~~~~~K~~  145 (146)
T d1i7ka_         128 K-NPTAFKKYLQETYSKQV  145 (146)
T ss_dssp             T-SHHHHHHHHHHHHHTTC
T ss_pred             h-CHHHHHHHHHHHHHccC
Confidence            5 99999888888888775

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=99.96  E-value=2.7e-29  Score=187.86  Aligned_cols=98  Identities=24%  Similarity=0.540  Sum_probs=93.8

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      ++.+|.| |++||++||+|+|.|++|||||+. +|.||++++.+.|+|.++|.+||.+|+++|.+|++++|+|.+++++|
T Consensus        52 f~~~i~~-p~~YP~~pP~v~f~t~i~HPnI~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~  129 (153)
T d1ayza_          52 FRLLLEF-DEEYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLF  129 (153)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHH
T ss_pred             EEEEEec-CccccCCCCeeeeccCCCccCCCC-CCccccccccccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence            5678899 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a~  101 (172)
                      ++|+++|.++||+|++++++
T Consensus       130 ~~~~~~f~~~~~~~~~ks~~  149 (153)
T d1ayza_         130 KDHKSQYVKRVKETVEKSWE  149 (153)
T ss_dssp             HHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999874

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=99.96  E-value=2.1e-29  Score=189.41  Aligned_cols=98  Identities=24%  Similarity=0.472  Sum_probs=89.7

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC--CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK   79 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~--~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~   79 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+. +|.||+++|.  ++|+|++||.+||.+|+++|.+|++++|+|.++++
T Consensus        56 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnV~~-~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~  133 (156)
T d2uyza1          56 FKLRMLF-KDDYPSSPPKCKFEPPLFHPNVYP-SGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT  133 (156)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCSTTBCT-TSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHH
T ss_pred             EEEEEeC-CccccCCCceeeeccccccccccc-cceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHH
Confidence            4568888 999999999999999999999995 9999999994  57999999999999999999999999999999999


Q ss_pred             HHhhCHHHHHHHHHHHHHHHHH
Q psy17486         80 QYKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        80 ~~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      +|++|+++|.++||+|+++||.
T Consensus       134 ~~~~~~~~f~~~vr~~~~k~A~  155 (156)
T d2uyza1         134 IYCQNRVEYEKRVRAQAKKFAP  155 (156)
T ss_dssp             HHHHCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHCHHHHHHHHHHHHHHHCC
Confidence            9999999997777777777663

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=99.95  E-value=1.3e-29  Score=188.14  Aligned_cols=96  Identities=29%  Similarity=0.590  Sum_probs=89.3

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+. +|.||+++|. ++|+|.+++.+||.+|+++|.+|++++|+|.+|+++
T Consensus        48 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnV~~-~G~icl~~l~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~  125 (144)
T d1c4zd_          48 FRIEINF-PAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEE  125 (144)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCT-TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHH
T ss_pred             EEEEEEe-cCcccCCCceeeccCCCCCcCCcc-CCccccccccCCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHH
Confidence            5678899 999999999999999999999995 9999999996 579999999999999999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHWTNVY   99 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t~~~   99 (172)
                      |++|++.|.++||+||++|
T Consensus       126 ~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_         126 YSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             HHTCSSTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            9999999977777777665

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=99.95  E-value=5.3e-29  Score=187.98  Aligned_cols=97  Identities=27%  Similarity=0.560  Sum_probs=91.2

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCC-------------CcCCcCCHHHHHHHHHHhhcCCC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKD-------------QWAAAMTLRTVLLSLQALMAAAE   68 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~-------------~W~p~~~l~~vL~~i~~ll~~p~   68 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+. +|.||+++|..             .|+|+++|.+||.+|+++|.+|+
T Consensus        50 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnI~~-~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~  127 (161)
T d1pzva_          50 FKAILDF-PRDYPQKPPKMKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPN  127 (161)
T ss_dssp             EEEEEEC-CTTGGGSCCEEEECSCCCCTTBCT-TSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             EEEEEeC-CCCCCCCCCeEEecCCCCCcccCC-CCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCC
Confidence            5678899 999999999999999999999995 99999999943             59999999999999999999999


Q ss_pred             CCChHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy17486         69 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        69 ~~~p~n~~aa~~~~~~~~~f~~~ar~~t~~~a  100 (172)
                      +++|+|.+|+++|++|+++|.++|++||+++.
T Consensus       128 ~~~p~n~eaa~l~~~~~~~f~~~a~~~v~k~~  159 (161)
T d1pzva_         128 FESPANVDAAKMQRENYAEFKKKVAQCVRRSQ  159 (161)
T ss_dssp             CSSCSCHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             CCCccCHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998875

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.95  E-value=2.1e-29  Score=189.87  Aligned_cols=99  Identities=22%  Similarity=0.417  Sum_probs=93.1

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHH-HHHhhcCCCCCChHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVVAKQ   80 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~-i~~ll~~p~~~~p~n~~aa~~   80 (172)
                      +..+|.| |++||.+||+|+|.|+||||||++.+|.||+++|.++|+|.+++.++|.. |+.|+.+|++++|+|.+|+++
T Consensus        45 f~~~i~f-p~~YP~~pP~v~F~t~i~HPnI~~~~G~vcl~il~~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l  123 (158)
T d1yf9a1          45 WMLHVQL-PSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHL  123 (158)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHH
T ss_pred             EEEEEEC-cccchhhceeEEecCCCCCCCCccCcccccccccccccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHH
Confidence            5678899 99999999999999999999998778999999999999999999999975 778899999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHHHH
Q psy17486         81 YKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        81 ~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      |++|+++|.++||+||++||.
T Consensus       124 ~~~n~~~f~~~~k~~~~k~a~  144 (158)
T d1yf9a1         124 LHADRVGFDALLREHVSTHAT  144 (158)
T ss_dssp             HHHCHHHHHHHHHHHHHHHCC
T ss_pred             HHHCHHHHHHHHHHHHHHHCC
Confidence            999999999999999999985

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=99.95  E-value=1.2e-28  Score=185.41  Aligned_cols=95  Identities=25%  Similarity=0.504  Sum_probs=89.3

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||++++.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        50 f~~~i~f-p~~YP~~pP~V~f~t~i~HPnv~~-~G~ic~~~~~~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~  127 (157)
T d1y8xa1          50 FVFSFKV-GQGYPHDPPKVKCETMVYHPNIDL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVL  127 (157)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred             EEEEEEe-cCCCCCCCceeeecccCCCccccc-cceeeeeecccCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHH
Confidence            5678999 999999999999999999999996 89999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNV   98 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~   98 (172)
                      ++|+++|.++||+|++.
T Consensus       128 ~~~~~~f~~~v~~~~~~  144 (157)
T d1y8xa1         128 QNNRRLFEQNVQRSMRG  144 (157)
T ss_dssp             HSCHHHHHHHHHHHHHS
T ss_pred             HHCHHHHHHHHHHHHcC
Confidence            99999997777777653

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=99.95  E-value=1.1e-28  Score=186.63  Aligned_cols=98  Identities=19%  Similarity=0.433  Sum_probs=90.7

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-------------CCcCCcCCHHHHHHHHHHhhcCCC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAE   68 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-------------~~W~p~~~l~~vL~~i~~ll~~p~   68 (172)
                      +..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.             +.|+|+++|.+||.+|+++|.+|+
T Consensus        53 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnv~~-~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~  130 (164)
T d2ucza_          53 FNAKLEF-PKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPN  130 (164)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESSCCSCTTBCT-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCC
T ss_pred             eEEEEec-CCCCCCCCCeEEeecCceeceEcC-CCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCC
Confidence            4678889 999999999999999999999995 9999999994             469999999999999999999999


Q ss_pred             CCChHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q psy17486         69 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  101 (172)
Q Consensus        69 ~~~p~n~~aa~~~~~~~~~f~~~ar~~t~~~a~  101 (172)
                      +++|+|.+||++|++|+++|.++||+++.++.+
T Consensus       131 ~~~p~n~eaa~l~~~~~~~f~~~~r~~~~k~~~  163 (164)
T d2ucza_         131 IESGANIDACILWRDNRPEFERQVKLSILKSLG  163 (164)
T ss_dssp             GGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred             CCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence            999999999999999999998888888887653

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=99.95  E-value=2.1e-28  Score=182.57  Aligned_cols=93  Identities=27%  Similarity=0.548  Sum_probs=87.4

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC--CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK   79 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~--~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~   79 (172)
                      ++.+|.| |++||++||+|+|.|+||||||++.+|.||+++|.  ++|+|++||.+||.+|+++|.+|++++|+|.+|++
T Consensus        53 f~~~i~f-p~~YP~~pP~v~f~t~i~HpnV~~~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~  131 (148)
T d1yrva1          53 FQLTIHF-TSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAAR  131 (148)
T ss_dssp             EEEEEEC-CTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHH
T ss_pred             eEEEEEe-ccccccCCceeeeccccccCceecCcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHH
Confidence            4678999 99999999999999999999999779999999994  68999999999999999999999999999999999


Q ss_pred             HHhhCHHHHHHHHHHH
Q psy17486         80 QYKENPEMFTLTARHW   95 (172)
Q Consensus        80 ~~~~~~~~f~~~ar~~   95 (172)
                      +|++|++.|.++||++
T Consensus       132 ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1         132 ILVKDESLYRTILRLF  147 (148)
T ss_dssp             HHHSCHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHhh
Confidence            9999999997777764

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=99.94  E-value=2.6e-27  Score=177.95  Aligned_cols=96  Identities=33%  Similarity=0.585  Sum_probs=89.2

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY   81 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~   81 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+. +|.||+++|.+.|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus        58 f~~~i~f-p~~YP~~pP~v~f~t~i~Hpnv~~-~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~  135 (156)
T d2e2ca_          58 YKLTLEF-PSDYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW  135 (156)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT
T ss_pred             EEEEEEe-cCCCCCCCceeeccccCcCCCCCC-CCCccccccCCCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Confidence            5678999 999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHHHHHHHH
Q psy17486         82 KENPEMFTLTARHWTNVYA  100 (172)
Q Consensus        82 ~~~~~~f~~~ar~~t~~~a  100 (172)
                      + |..+|.++||+.+.+..
T Consensus       136 ~-n~~~y~k~~~e~~~~~~  153 (156)
T d2e2ca_         136 S-NQTEYKKVLHEKYKTAQ  153 (156)
T ss_dssp             T-CHHHHHHHHHHHHHHHH
T ss_pred             H-CHHHHHHHHHHHHHHHh
Confidence            6 66789999888777654

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.6e-23  Score=155.96  Aligned_cols=91  Identities=12%  Similarity=0.264  Sum_probs=74.7

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccC-CCCcCCcCCHHHHHHHHHHhhcCCCC--CChHHHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEP--DDPQDAVVA   78 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l-~~~W~p~~~l~~vL~~i~~ll~~p~~--~~p~n~~aa   78 (172)
                      +..+|.| |++||++||+|+|+|+|||||+...+|.||+++| .++|+|++||++||.+|+++|.+|++  +.+.|.+++
T Consensus        68 ~~l~i~f-p~~YP~~PP~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y  146 (162)
T d1zuoa1          68 ILLNFSF-KDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQY  146 (162)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCC
T ss_pred             EEEEEEC-CCchhhhcceEEEEEEeeccccccCCceeecccccCCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHH
Confidence            4567888 9999999999999999999996556999999999 56799999999999999999988776  455565555


Q ss_pred             HHHhhCHHHHHHHHHH
Q psy17486         79 KQYKENPEMFTLTARH   94 (172)
Q Consensus        79 ~~~~~~~~~f~~~ar~   94 (172)
                      .+ .++++.|.+.||.
T Consensus       147 ~~-~~~~~~y~~~~~~  161 (162)
T d1zuoa1         147 NL-ARAQQSYNSIVQI  161 (162)
T ss_dssp             CH-HHHHHHHHHHHHH
T ss_pred             HH-HHhHHHHHHHHhh
Confidence            54 4567788666553

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-21  Score=139.63  Aligned_cols=62  Identities=29%  Similarity=0.595  Sum_probs=58.3

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEeccc--ccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhc
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKI--WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA   65 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i--~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~   65 (172)
                      ++.+|.| |++||++||+|+|.|++  |||||+. +|.||+++|.++|+|++||++||.+|+++|+
T Consensus        54 f~~~i~f-p~~YP~~pP~v~F~t~~~~~Hpnv~~-~G~iCl~~l~~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          54 FQLLFKF-SSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             EEEEEEE-CTTTTTSCCEEEEESSCCCCBTTBCT-TCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             eeEEEec-CcccccCCCEEEEeCCCccccccCcC-CCeEEeecCcCCCCCcCcHHHHHHHHHHHhC
Confidence            5678999 99999999999999987  8999995 9999999999999999999999999999984

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.83  E-value=2.3e-21  Score=145.16  Aligned_cols=102  Identities=17%  Similarity=0.226  Sum_probs=76.3

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCCh--HHHH-HH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP--QDAV-VA   78 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p--~n~~-aa   78 (172)
                      ++.+|.| |++||++||+|+|.|+++|||++...+..|++++.++|+|++||++||.+|+++|.+|+++..  .+.+ ..
T Consensus        50 f~~~i~f-p~~YP~~pP~v~f~t~~~~~~~~g~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~  128 (157)
T d2f4wa1          50 YHGKLIF-PREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTK  128 (157)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEECSCCSSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHH
T ss_pred             EEEEEec-cCCcCCCCCEEEeeCCCcccCCCCCeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHH
Confidence            5678899 999999999999999999999864222233444578899999999999999999999988652  3233 34


Q ss_pred             HHHhhCHHHHHHHHHHHHHHHHHHHH
Q psy17486         79 KQYKENPEMFTLTARHWTNVYAGVVA  104 (172)
Q Consensus        79 ~~~~~~~~~f~~~ar~~t~~~a~~~~  104 (172)
                      ++|..+...|..+++.++++|...+.
T Consensus       129 ~~~~~~~~~f~~k~~~~~~~~~~~~e  154 (157)
T d2f4wa1         129 RQLAVQSLAFNLKDKVFCELFPEVVE  154 (157)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888889999999999998876543

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=99.83  E-value=2.1e-21  Score=140.35  Aligned_cols=64  Identities=30%  Similarity=0.728  Sum_probs=59.7

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-------------CCcCCcCCHHHHHHHHHHhhcCC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAA   67 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-------------~~W~p~~~l~~vL~~i~~ll~~p   67 (172)
                      ++.+|+| |++||++||+|+|.|++|||||+ .+|.||+++|.             ++|+|++|+++||.+|+++|.+|
T Consensus        49 f~~~i~f-p~~YP~~pP~v~f~t~i~Hpni~-~~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          49 FKAHLTF-PKDYPLRPPKMKFITEIWHPNVD-KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             EEEEEEC-CTTTTSSCCEEEECSCCCCTTBC-TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             eEEEEec-CCCcCCCCCeEEecCCCCccccC-CCCEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence            5678999 99999999999999999999999 49999999993             57999999999999999999887

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.82  E-value=1.4e-22  Score=148.75  Aligned_cols=69  Identities=25%  Similarity=0.400  Sum_probs=62.7

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-CCcCCcCCHHHHHHHHHHhhcCCCCCC
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDD   71 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-~~W~p~~~l~~vL~~i~~ll~~p~~~~   71 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+..+|.||++++. ++|+|++||++||++|+++|.+|+...
T Consensus        57 f~~~i~f-p~~YP~~PP~v~f~t~i~HpnV~~~~G~icl~~l~~~~Wsp~~ti~~IL~~i~~lL~~P~n~~  126 (136)
T d1jatb_          57 YSLSIDC-GPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKK  126 (136)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESBCCCCTTBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHT
T ss_pred             EEEEEEe-cCCCCCCCCEEEEeccccccccccCCCeEECCCCcccCcCccCcHHHHHHHHHHHHcCCCCCC
Confidence            4678899 99999999999999999999999878999999984 789999999999999999999876433

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=99.82  E-value=5.8e-21  Score=134.97  Aligned_cols=62  Identities=24%  Similarity=0.475  Sum_probs=57.9

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEeccc-ccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhc
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKI-WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA   65 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i-~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~   65 (172)
                      ++.+|.| |++||++||+|+|.|++ +||||+. +|.||+|+|.++|+|++|+++||.+|+++|+
T Consensus        47 f~~~i~f-p~~YP~~pP~v~F~t~~~~hpni~~-~G~iCl~il~~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          47 YKLKIIF-PDDYPLKPPIVYFLQKPPKHTHVYS-NGDICLSLLGDDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEECSSCCCBTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred             ceEEEEe-ccccCCCCCeEEEEeccccCceECC-CCeEEeecccCCCCccCCHHHHHHHHHHHhC
Confidence            4678999 99999999999999986 8999984 9999999999999999999999999999884

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.80  E-value=7.4e-21  Score=139.85  Aligned_cols=74  Identities=20%  Similarity=0.322  Sum_probs=67.0

Q ss_pred             CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC--CCcCCcCCHHHHHHHHHHhhcCC-CCCChHHHH
Q psy17486          2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAAA-EPDDPQDAV   76 (172)
Q Consensus         2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~--~~W~p~~~l~~vL~~i~~ll~~p-~~~~p~n~~   76 (172)
                      ++.+|.| |++||++||+|+|.|+||||||+..+|.+|++.+.  ++|+|++||++||.+|+++|.+| ++++|+|+|
T Consensus        58 f~~~i~f-p~~YP~~pP~v~F~t~i~HpnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~~e  134 (139)
T d2a4da1          58 YSLKIEC-GPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPE  134 (139)
T ss_dssp             EEEEEEC-CTTTTTSCCEEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCT
T ss_pred             EEEEEEC-CCCCCCCCCEEEEecCcccccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCCCC
Confidence            4678999 99999999999999999999999888999887763  68999999999999999999886 888888876

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=2.6e-14  Score=105.80  Aligned_cols=65  Identities=22%  Similarity=0.169  Sum_probs=57.6

Q ss_pred             CcEEEEcCCCCCCCCCeeEEecc-----------cccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCC
Q psy17486          3 DTTVKFVTKIWHPNISSVKFLTK-----------IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP   69 (172)
Q Consensus         3 ~~~i~F~p~~YP~~pP~v~F~t~-----------i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~   69 (172)
                      ...|.| |++||+.||.+.|.++           ++||||+. +|+||+++|.++|.|..+|.++|.+|+.+|.+|-+
T Consensus        75 pi~I~l-P~~YP~~pP~v~~~~~~~~~~~~~~~i~~hp~Vd~-~G~V~lp~L~~W~~~~s~L~~ll~~l~~~f~~~P~  150 (152)
T d1uzxa_          75 PVIMWV-PSMYPVKPPFISINLENFDMNTISSSLPIQEYIDS-NGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQ  150 (152)
T ss_dssp             EEEEEC-CTTTTTSCCEEEECCTTCCSCC----CGGGGGBCT-TSCBCCHHHHSCCTTTCCHHHHHHHHHTGGGSCCC
T ss_pred             EEEEEc-CCCCCCCCCEEEEecCcccccCCCcccccCCCCCC-CCcEehHHhcCCCCccCcHHHHHHHHHHHhcCCCC
Confidence            345666 9999999999999875           67999995 99999999998889999999999999999998743

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.4e-13  Score=99.32  Aligned_cols=63  Identities=10%  Similarity=0.052  Sum_probs=54.7

Q ss_pred             cEEEEcCCCCCCCCCeeEEecc-----cccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCC
Q psy17486          4 TTVKFVTKIWHPNISSVKFLTK-----IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE   68 (172)
Q Consensus         4 ~~i~F~p~~YP~~pP~v~F~t~-----i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~   68 (172)
                      ..|.| |.+||.+||.|.|.+.     ++||||++ +|+||+++|.++|.|..+|.+++..|+++|.+..
T Consensus        70 i~i~~-p~~YP~~pP~v~~~pt~~~~~~~h~~V~~-~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~e~  137 (141)
T d1s1qa_          70 ICLWL-LDTYPYNPPICFVKPTSSMTIKTGKHVDA-NGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEP  137 (141)
T ss_dssp             EEEEE-CTTTTSSCCEEEECCCTTCEECCSSSBCT-TCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSC
T ss_pred             EEEEC-CccCCCCCCEEEEecCCCccccCCCeECC-CCCCcchhhcCCCcccccHHHHHHHHHHHhCCCC
Confidence            35556 9999999999988753     68999995 9999999998777888899999999999998743

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.3e-12  Score=72.82  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=37.7

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      ++++.|+.|++|||+++.|+.||+..+||++.|+++|||
T Consensus         3 ~~e~~i~~L~~MGF~~~~a~~AL~~~~~N~e~A~~~LlS   41 (41)
T d1oqya1           3 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT   41 (41)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            579999999999999999999999999999999999997

>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.3e-11  Score=68.53  Aligned_cols=40  Identities=35%  Similarity=0.640  Sum_probs=38.0

Q ss_pred             CCchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        132 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       132 ~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      .|++..||+.|.+|||+.++|+.|||..+||++.|.|+|+
T Consensus         3 speyt~kidklca~gf~knavi~alsskswdvetatelll   42 (42)
T d3e46a1           3 SPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLL   42 (42)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHccccccceeeeeccCccchhhHHHhhC
Confidence            4688999999999999999999999999999999999986

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.04  E-value=1e-10  Score=66.86  Aligned_cols=36  Identities=33%  Similarity=0.607  Sum_probs=34.5

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      +..|+.|++|||+++.|+.||.+++||++.|+++|+
T Consensus         5 ~~ai~eL~~MGF~e~~A~~AL~k~~wnleaAtN~LL   40 (43)
T d2g3qa1           5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLL   40 (43)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            567999999999999999999999999999999998

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.1e-08  Score=64.29  Aligned_cols=38  Identities=13%  Similarity=0.163  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      .++.|+.|++|||+++.|+.||...+|+++.|+++||+
T Consensus        19 de~~v~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Lls   56 (63)
T d1wgna_          19 ERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA   56 (63)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            47889999999999999999999999999999999984

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.61  E-value=1.6e-08  Score=65.26  Aligned_cols=38  Identities=29%  Similarity=0.401  Sum_probs=36.3

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      .++.|+.|++|||+++.++.||...++|++.|+++||+
T Consensus        29 ~ee~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Ll~   66 (73)
T d1vg5a_          29 SEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS   66 (73)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            48899999999999999999999999999999999985

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.57  E-value=2.7e-08  Score=64.19  Aligned_cols=38  Identities=29%  Similarity=0.391  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      -.+.|+.|++|||++..|+.||...+++++.|+++||+
T Consensus        29 d~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~Av~~Lls   66 (73)
T d1wiva_          29 DQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN   66 (73)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            37789999999999999999999999999999999984

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.4e-07  Score=58.99  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=35.4

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      .+.|+.|++|||++..++.||...++++++|+++||+
T Consensus        10 ~~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~~wL~~   46 (63)
T d1wjia_          10 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT   46 (63)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            7889999999999999999999999999999999983

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.5e-06  Score=51.85  Aligned_cols=37  Identities=24%  Similarity=0.322  Sum_probs=33.9

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCC-ChHHHHHHhhC
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIFT  172 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W-~~~~a~~~l~~  172 (172)
                      +..|+.|++|||++..+..||...+. +++.|++.||+
T Consensus        13 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~ve~A~~WLl~   50 (51)
T d2cpwa1          13 GSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS   50 (51)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence            45699999999999999999999877 89999999985

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=1.5e-05  Score=45.88  Aligned_cols=38  Identities=21%  Similarity=0.463  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHcCCChHHH-HHHHHhcCCChHHHHHHhhC
Q psy17486        135 FDSKIQRLTDMGVMSHDA-RVALSTYNWELERATEAIFT  172 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a-~~aLs~~~W~~~~a~~~l~~  172 (172)
                      +..-.+.|.+|||.-+.+ +.||...++|++.|++.||+
T Consensus         5 y~~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~   43 (44)
T d2bwba1           5 YEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   43 (44)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHhC
Confidence            455678999999966665 89999999999999999985

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=9e-06  Score=50.64  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=33.8

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCC-ChHHHHHHhhC
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIFT  172 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W-~~~~a~~~l~~  172 (172)
                      .+.++.|++|||+++.|..||...+. ++++|++.||+
T Consensus        10 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~   47 (64)
T d1whca_          10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLME   47 (64)
T ss_dssp             CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            46899999999999999999999877 89999999983

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.73  E-value=4.1e-05  Score=40.75  Aligned_cols=37  Identities=32%  Similarity=0.425  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      +..||.+++.||||.-.+..||...+.|++-|..+|+
T Consensus         2 lnskiaqlvsmgfdpleaaqaldaangdldvaasfll   38 (38)
T d1z96a1           2 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL   38 (38)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             cchHHHHHHHcCCCHHHHHHHHhhhcCcHHHHHHhhC
Confidence            4578999999999999999999999999999988775

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.7e-05  Score=47.10  Aligned_cols=34  Identities=26%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             HHHHHHHcCCChHHHHHHHHhcC-CChHHHHHHhh
Q psy17486        138 KIQRLTDMGVMSHDARVALSTYN-WELERATEAIF  171 (172)
Q Consensus       138 kv~~l~~~gf~~~~a~~aLs~~~-W~~~~a~~~l~  171 (172)
                      .|+.|++|||++..|..||...+ -+++.|++.||
T Consensus         5 ~v~~L~~MGF~~~~a~~Al~~t~n~~ve~A~~Wl~   39 (51)
T d2crna1           5 LLEPLLAMGFPVHTALKALAATGRKTAEEALAWLH   39 (51)
T ss_dssp             SHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            37899999999999999998864 49999999987

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=3.2e-05  Score=43.76  Aligned_cols=37  Identities=24%  Similarity=0.424  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHcCCChHHH-HHHHHhcCCChHHHHHHhh
Q psy17486        135 FDSKIQRLTDMGVMSHDA-RVALSTYNWELERATEAIF  171 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a-~~aLs~~~W~~~~a~~~l~  171 (172)
                      +....+.|.+|||.-+.. +.||...+.|++.|+|.|+
T Consensus         2 y~~QL~~L~~MGF~d~~~Ni~AL~~t~Gdv~~Aie~Ll   39 (41)
T d2daha1           2 FQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLR   39 (41)
T ss_dssp             SHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            356788999999988777 8999999999999999997

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=5e-05  Score=46.54  Aligned_cols=39  Identities=21%  Similarity=0.390  Sum_probs=34.7

Q ss_pred             chHHHHHHHHHcCCChHHH-HHHHHhcCCChHHHHHHhhC
Q psy17486        134 DFDSKIQRLTDMGVMSHDA-RVALSTYNWELERATEAIFT  172 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~~~a-~~aLs~~~W~~~~a~~~l~~  172 (172)
                      .+..-++.|.+|||..+.+ +.||...+.|++.|+|+||+
T Consensus        21 ry~~QL~qL~eMGF~d~~~Nl~AL~~t~Gdv~~Aie~Ll~   60 (61)
T d1veja1          21 RYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG   60 (61)
T ss_dssp             TSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            3678899999999976666 99999999999999999985

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.54  E-value=5.8e-05  Score=49.30  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=33.1

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhc-CCChHHHHHHhh
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTY-NWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~-~W~~~~a~~~l~  171 (172)
                      ...|..|++|||++..|+.||... +.+++.|++.||
T Consensus        30 ~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~   66 (84)
T d1veka_          30 EEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLL   66 (84)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            678999999999999999999885 579999999998

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=7.9e-05  Score=43.81  Aligned_cols=37  Identities=22%  Similarity=0.255  Sum_probs=32.4

Q ss_pred             hHHHHHHHHHcCCChHHH-HHHHHhcCCChHHHHHHhh
Q psy17486        135 FDSKIQRLTDMGVMSHDA-RVALSTYNWELERATEAIF  171 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a-~~aLs~~~W~~~~a~~~l~  171 (172)
                      +..-.+.|.+|||.-+.+ +.||...+.|++.|++.|+
T Consensus         8 y~~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll   45 (50)
T d2dnaa1           8 FSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLK   45 (50)
T ss_dssp             THHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            456688999999966555 9999999999999999997

>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=7.5e-05  Score=42.49  Aligned_cols=39  Identities=15%  Similarity=0.110  Sum_probs=36.3

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486        134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  172 (172)
Q Consensus       134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~  172 (172)
                      +..+.|+.|.+|||+++.|+.|-=.++=|.+-|.++||+
T Consensus         3 ee~~aIeRL~~LGF~r~~viqay~ACdKNEelAaN~L~~   41 (44)
T d1oqya2           3 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS   41 (44)
T ss_dssp             TTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            568899999999999999999999999999999999983

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.34  E-value=0.0032  Score=36.05  Aligned_cols=37  Identities=19%  Similarity=0.434  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        135 FDSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       135 ~~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      .+..|..+++. |-+++.|+..|..++||++.|+...+
T Consensus         5 ~~~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~yf   42 (46)
T d1v92a_           5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFY   42 (46)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHH
Confidence            46788888766 88999999999999999999998765

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.0052  Score=33.23  Aligned_cols=35  Identities=29%  Similarity=0.258  Sum_probs=30.3

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhc-CCChHHHHHHh
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTY-NWELERATEAI  170 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~-~W~~~~a~~~l  170 (172)
                      .+..+.|+..|||++.|+.||+.- +=..++|+|++
T Consensus         3 RQMlqdl~~aG~D~~m~iral~qt~~rsieaaie~i   38 (41)
T d2cosa1           3 RQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYI   38 (41)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHH
Confidence            578899999999999999999864 56789999986

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.0064  Score=39.53  Aligned_cols=40  Identities=28%  Similarity=0.566  Sum_probs=37.7

Q ss_pred             CCchHHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        132 NPDFDSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       132 ~~~~~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ++++..+|..+.+| |-+++.|..||-+++.|++.|++.||
T Consensus        29 D~~i~~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lL   69 (91)
T d1wj7a1          29 DADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL   69 (91)
T ss_dssp             CHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHHHH
Confidence            56799999999998 89999999999999999999999998

>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Sequestosome 1 (Sqstm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.01  Score=34.39  Aligned_cols=39  Identities=21%  Similarity=0.405  Sum_probs=35.1

Q ss_pred             CCchHHHHHHHHHcCCChHHH--HHHHHhcCCChHHHHHHh
Q psy17486        132 NPDFDSKIQRLTDMGVMSHDA--RVALSTYNWELERATEAI  170 (172)
Q Consensus       132 ~~~~~~kv~~l~~~gf~~~~a--~~aLs~~~W~~~~a~~~l  170 (172)
                      ++...+.+.+|.+|||+.+..  ..-|...+.|..+|++.|
T Consensus         7 dp~l~~al~qM~aMGFsneGGWLt~LL~skn~dI~~aLD~i   47 (52)
T d2k0bx1           7 DPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI   47 (52)
T ss_dssp             STTHHHHHHHHHHHTCCCSSSCHHHHHHHTTSCHHHHHHHT
T ss_pred             ChHHHHHHHHHHHcCCCCcchHHHHHHHHcCCCHHHHHHHH
Confidence            567899999999999999876  888999999999999876

>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: NEDD8 ultimate buster-1 (Nub1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.11  E-value=0.018  Score=36.12  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      --.+|++|+.|||+.+.|-.||+--..|+.-|...|.
T Consensus        29 sQesidqLvYMGF~~~~Ae~ALRvfrGnVQlAaQtLa   65 (83)
T d1vega_          29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLA   65 (83)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHhcccHHHHHHHHHHhcccHHHHHHHHH
Confidence            3578999999999999999999999999999987764

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-protein ligase ubc1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.14  E-value=0.027  Score=33.02  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=23.9

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhcCCC
Q psy17486        136 DSKIQRLTDMGVMSHDARVALSTYNWE  162 (172)
Q Consensus       136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~  162 (172)
                      +..|+.++.|||+++.++.+|+.-+-.
T Consensus        10 ~~~V~~f~~mGF~rdKvI~VLrrlgik   36 (55)
T d1ttea1          10 HDLIDEFESQGFEKDKIVEVLRRLGVK   36 (55)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHhCcC
Confidence            788999999999999999999986643

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.65  E-value=0.07  Score=30.98  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=30.0

Q ss_pred             HHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      .+.|..|++. |...-....||..+++|++.|++.|.
T Consensus         3 ~elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~Lr   39 (52)
T d1aipc1           3 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLR   39 (52)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3567777644 88889999999999999999999884

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.06  Score=32.09  Aligned_cols=36  Identities=14%  Similarity=0.256  Sum_probs=33.2

Q ss_pred             HHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ++.++.|.+|  ++|++-+...|.+++++++.|++.||
T Consensus        10 Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL   47 (59)
T d1wgla_          10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLL   47 (59)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            6679999999  88889899999999999999999998

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.61  E-value=0.069  Score=31.47  Aligned_cols=36  Identities=19%  Similarity=0.224  Sum_probs=29.7

Q ss_pred             HHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      .+.|..|++. |...-+...||..++||++.|++.|.
T Consensus         5 ~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~Lr   41 (56)
T d1xb2b1           5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLH   41 (56)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3456677544 88888899999999999999999885

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.095  Score=30.61  Aligned_cols=36  Identities=28%  Similarity=0.307  Sum_probs=29.9

Q ss_pred             HHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        136 DSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       136 ~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      .+.|..|++. |...-+...||...+||++.|++.|.
T Consensus         5 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~Lr   41 (54)
T d1efub3           5 ASLVKELRERTGAGMMDCKKALTEANGDIELAIENMR   41 (54)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3567777654 88888899999999999999999884

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.12  E-value=0.11  Score=30.29  Aligned_cols=37  Identities=11%  Similarity=0.114  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        135 FDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       135 ~~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      ..+.++.|.+|  ++|.+-....|..++|+++.|++.||
T Consensus        12 ~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL   50 (54)
T d1mn3a_          12 RKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALL   50 (54)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            46667788888  77888889999999999999999997

>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Migration-inducing protein 19 NBR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.19  Score=27.28  Aligned_cols=35  Identities=14%  Similarity=0.278  Sum_probs=29.3

Q ss_pred             HHHHHHHHcCCChHHH-HHHHHhcCCChHHHHHHhh
Q psy17486        137 SKIQRLTDMGVMSHDA-RVALSTYNWELERATEAIF  171 (172)
Q Consensus       137 ~kv~~l~~~gf~~~~a-~~aLs~~~W~~~~a~~~l~  171 (172)
                      .....|.+|||--... ..-|.+|+.++..++..|+
T Consensus         4 ~lM~~L~EMGF~DR~lNq~LL~KH~~nl~~vV~eLl   39 (41)
T d2cp8a1           4 ALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELL   39 (41)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCcchhHHHHHHHHHccCcHHHHHHHHH
Confidence            3467899999977776 7889999999999998775

>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Trinucleotide repeat containing 6c protein, TNRC6C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.39  Score=29.22  Aligned_cols=37  Identities=35%  Similarity=0.494  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486        135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  171 (172)
Q Consensus       135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~  171 (172)
                      +..-+.+|..|||.++.+-.+|..++-+++.|+--|+
T Consensus        14 Mnp~~KQfsnMGf~re~~e~~l~sN~m~L~~a~~~l~   50 (72)
T d2dkla1          14 MSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALL   50 (72)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             hhHHHHHHhhcCCcCCChHHhhhccCcchhhcccchh
Confidence            3567899999999999999999999999999885553

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.25  E-value=0.12  Score=36.13  Aligned_cols=23  Identities=70%  Similarity=1.229  Sum_probs=19.2

Q ss_pred             HhhhcCchhhHHHHHHHHHHhcC
Q psy17486        105 KQYKENPEMFTLTARHWTNVYAG  127 (172)
Q Consensus       105 ~~~~~~~~~~~~~a~~w~~~~~~  127 (172)
                      ..++.++..|.+.||+||++|||
T Consensus       132 ~l~~~~~~~f~~~a~~~t~k~A~  154 (154)
T d2bepa1         132 NQYKQNPEMFKQTARLWAHVYAG  154 (154)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHCHHHHHHHHHHHHHHhcC
Confidence            45566777889999999999997

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.96  E-value=0.18  Score=33.09  Aligned_cols=23  Identities=0%  Similarity=0.018  Sum_probs=18.2

Q ss_pred             cEEEEcCCCCCCCCCeeEEecccc
Q psy17486          4 TTVKFVTKIWHPNISSVKFLTKIW   27 (172)
Q Consensus         4 ~~i~F~p~~YP~~pP~v~F~t~i~   27 (172)
                      ..|.| |++||..+|.+.+.+.-+
T Consensus        56 L~~~~-p~~YP~~~P~i~~~~~~~   78 (115)
T d2daya1          56 LVLQV-PAEYPHEVPQISIRNPRG   78 (115)
T ss_dssp             EEEEE-CSSTTSSCCEEEEEEEES
T ss_pred             EEEEc-CCCCCCCCCcEEeeccCC
Confidence            45777 999999999998776443

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.17  E-value=0.94  Score=30.31  Aligned_cols=63  Identities=6%  Similarity=-0.014  Sum_probs=35.5

Q ss_pred             cEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHHhh
Q psy17486          4 TTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE   83 (172)
Q Consensus         4 ~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~~~   83 (172)
                      ..|.+ |++||..+|.+...+    +                 |-+...+..++..+...+..-....|.--++....++
T Consensus        72 L~~~l-p~~YP~~~P~i~~~~----~-----------------~l~~~~~~~l~~~l~~~~~e~~~Ge~mif~lv~~lqe  129 (141)
T d2dawa1          72 LQVTM-PHSYPYLALQLFGRS----S-----------------ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQD  129 (141)
T ss_dssp             EEEEE-CSSTTSSCCEEEEEC----S-----------------SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHH
T ss_pred             EEEEe-CCCCCCCCCCceeec----c-----------------ccCHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            45677 999999999886543    1                 1222234555666666665433445554444444444


Q ss_pred             CHHHH
Q psy17486         84 NPEMF   88 (172)
Q Consensus        84 ~~~~f   88 (172)
                      +-..|
T Consensus       130 ~~~~~  134 (141)
T d2dawa1         130 NSASY  134 (141)
T ss_dssp             TTHHH
T ss_pred             HHHHH
Confidence            44433

>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: FG-binding, C-terminal domain of TAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.11  E-value=1.1  Score=26.15  Aligned_cols=38  Identities=21%  Similarity=0.446  Sum_probs=29.7

Q ss_pred             CchHHHHHHHH-HcCCChHHHHHHHHhcCCChHHHHHHh
Q psy17486        133 PDFDSKIQRLT-DMGVMSHDARVALSTYNWELERATEAI  170 (172)
Q Consensus       133 ~~~~~kv~~l~-~~gf~~~~a~~aLs~~~W~~~~a~~~l  170 (172)
                      ++..+.|..+. .-|.+..=+...|...+||.+.|+..+
T Consensus         5 ~~Qq~mv~~~s~~T~mn~e~s~~cLe~~~Wd~~~A~~~F   43 (59)
T d1oaia_           5 PEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF   43 (59)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            34455666664 458899999999999999999999765

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=83.42  E-value=0.3  Score=33.79  Aligned_cols=25  Identities=44%  Similarity=0.598  Sum_probs=20.3

Q ss_pred             HHhhhcCchhhHHHHHHHHHHhcCC
Q psy17486        104 AKQYKENPEMFTLTARHWTNVYAGG  128 (172)
Q Consensus       104 ~~~~~~~~~~~~~~a~~w~~~~~~~  128 (172)
                      +..++.++..|.+.||+|+++||+.
T Consensus       125 a~l~~~~~~~f~~~ar~~~~kyA~~  149 (149)
T d1j7db_         125 AEQWKTNEAQAIETARAWTRLYAMN  149 (149)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHCHHHHHHHHHHHHHHhccC
Confidence            4555677778899999999999973

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.87  E-value=0.35  Score=33.57  Aligned_cols=49  Identities=12%  Similarity=0.206  Sum_probs=31.4

Q ss_pred             cCCCCCCCCCeeEEeccc-ccccccCCCCceecccCCC-Cc---CCcCCHHHHHH
Q psy17486          9 VTKIWHPNISSVKFLTKI-WHPNISSVTGAICLDILKD-QW---AAAMTLRTVLL   58 (172)
Q Consensus         9 ~p~~YP~~pP~v~F~t~i-~HPnV~~~~G~icl~~l~~-~W---~p~~~l~~vL~   58 (172)
                      +|..||..||.|..-.=- --.-.+ ..|+|||++... -|   .|.++|.+.|.
T Consensus        84 IP~tYP~t~pEi~lPeLdGKTaKMY-RGGkIClt~HFkPLWarN~PkfGIaHala  137 (162)
T d2in1a1          84 IPITYPTTAPEIAVPELDGKTAKMY-RGGKICLTDHFKPLWARNVPKFGLAHLMA  137 (162)
T ss_dssp             CCTTTTTSCCCCBCGGGSSSCSSSC-GGGBCCCCTTSHHHHHTTTTSCCHHHHHH
T ss_pred             cCCCCCCCCcceeccccCCchhhhh-cCceeeccccchhhhhhcCCchhHHHHHH
Confidence            499999999987543100 001122 479999998842 24   67788887764