Psyllid ID: psy17487

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHcccccccccEEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEEccccccccccccccEEEccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHcccccHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEcccccEccEcccccEEccHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHc
Coil and Loop (DISEMBL)
MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNytelkgeiagppdtpyeggnfvleikvpetypfnppkvkfltkiwhpnissvtGAICLDILKDQWAAAMTLRTVLLSLQALMaaaepddpqdAVVAKQYKENPEMFTLTARHwtnvyaggpsknpdfdskiqrltdmgvmsHDARVALSTYNWELERATEAIFT
Flexible Loop (DISEMBL)
maniaaqrikrefkevikseevakCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVyaggpsknpdfDSKIQRLTDMGVMSHDARVALstynwelerateaift
Low Complexity Region (SEG)
MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT
Disordered region (IsUnstruct)
************FKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAA**********VA*QYKENPEMFTLTARHWTNVYAG*************RLTDMGVMSHDARVALSTYNWELER*******
Disordered Region (DISOPRED)
*****AQ**KREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA***************LTDMGVMSHDARVALSTYNWELERATEAIFT
Disordered Region (DISEMBL)
MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT
Disordered Region (DISPRO)
*****AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
P52486	199	Ubiquitin-conjugating enz	yes	N/A	1.0	1.0	0.753	2e-83
P61087	200	Ubiquitin-conjugating enz	yes	N/A	1.0	0.995	0.723	4e-77
P61086	200	Ubiquitin-conjugating enz	yes	N/A	1.0	0.995	0.723	4e-77
P61085	200	Ubiquitin-conjugating enz	yes	N/A	1.0	0.995	0.723	4e-77
P52484	214	Probable ubiquitin-conjug	no	N/A	0.994	0.925	0.522	3e-58
Q9FI61	192	Ubiquitin-conjugating enz	yes	N/A	0.934	0.968	0.463	6e-47
O74810	217	Ubiquitin-conjugating enz	yes	N/A	0.773	0.709	0.484	2e-40
P21734	215	Ubiquitin-conjugating enz	yes	N/A	0.939	0.869	0.439	1e-39
Q9EQX9	152	Ubiquitin-conjugating enz	no	N/A	0.718	0.940	0.489	3e-31
Q4R4I1	152	Ubiquitin-conjugating enz	N/A	N/A	0.718	0.940	0.489	4e-31

>sp|P52486|UBCD4_DROME Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2

 Score =  308 bits (788), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 150/199 (75%), Positives = 176/199 (88%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MAN+A  RIKREFKEV++SEE+ +C+IK+EL++D++TEL+GEIAGPPDTPYEGG FVLEI
Sbjct: 1   MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           KVPETYPFNPPKV+F+T+IWHPNISSVTGAICLDILKD WAAAMTLRTVLLSLQAL+AAA
Sbjct: 61  KVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAA 120

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA Q+K+  ++F LTA+HWTN YAGGP   PD DSKIQRL DMG+  H+AR
Sbjct: 121 EPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGGPHTFPDCDSKIQRLRDMGIDEHEAR 180

Query: 181 VALSTYNWELERATEAIFT 199
             LS  NW LE+ATE +F+
Sbjct: 181 AVLSKENWNLEKATEGLFS 199

Catalyzes the covalent attachment of ubiquitin to other proteins.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|P61087|UBE2K_MOUSE Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=1 SV=3

 Score =  287 bits (734), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 144/199 (72%), Positives = 170/199 (85%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 1   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 61  KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 120

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   
Sbjct: 121 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 180

Query: 181 VALSTYNWELERATEAIFT 199
           VALS+ +W++E ATE + +
Sbjct: 181 VALSSKSWDVETATELLLS 199

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro, in the presence or in the absence of BRCA1-BARD1 E3 ubiquitin-protein ligase complex, catalyzes the synthesis of 'Lys-48'-linked polyubiquitin chains. Does not transfer ubiquitin directly to but elongates monoubiquitinated substrate protein. Mediates the selective degradation of short-lived and abnormal proteins, such as the endoplasmic reticulum-associated degradation (ERAD) of misfolded lumenal proteins. Ubiquitinates huntingtin. May mediate foam cell formation by the suppression of apoptosis of lipid-bearing macrophages through ubiquitination and subsequence degradation of p53/TP53. Proposed to be involved in ubiquitination and proteolytic processing of NF-kappa-B; in vitro supports ubiquitination of NFKB1. Involved in stabilization of CASP12 during ER stress-mediated beta-amyloid neurotoxicity probably by inhibiting proteasome activity; in vitro ubiquitinates CASP12.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P61086|UBE2K_HUMAN Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3

 Score =  287 bits (734), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 144/199 (72%), Positives = 170/199 (85%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 1   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 61  KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 120

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   
Sbjct: 121 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 180

Query: 181 VALSTYNWELERATEAIFT 199
           VALS+ +W++E ATE + +
Sbjct: 181 VALSSKSWDVETATELLLS 199

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro, in the presence or in the absence of BRCA1-BARD1 E3 ubiquitin-protein ligase complex, catalyzes the synthesis of 'Lys-48'-linked polyubiquitin chains. Does not transfer ubiquitin directly to but elongates monoubiquitinated substrate protein. Mediates the selective degradation of short-lived and abnormal proteins, such as the endoplasmic reticulum-associated degradation (ERAD) of misfolded lumenal proteins. Ubiquitinates huntingtin. May mediate foam cell formation by the suppression of apoptosis of lipid-bearing macrophages through ubiquitination and subsequence degradation of p53/TP53. Proposed to be involved in ubiquitination and proteolytic processing of NF-kappa-B; in vitro supports ubiquitination of NFKB1. In case of infection by cytomegaloviruses may be involved in the US11-dependent degradation of MHC class I heavy chains following their export from the ER to the cytosol. In case of viral infections may be involved in the HPV E7 protein-dependent degradation of RB1.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P61085|UBE2K_BOVIN Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3

 Score =  287 bits (734), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 144/199 (72%), Positives = 170/199 (85%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 1   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 61  KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 120

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   
Sbjct: 121 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 180

Query: 181 VALSTYNWELERATEAIFT 199
           VALS+ +W++E ATE + +
Sbjct: 181 VALSSKSWDVETATELLLS 199

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro, in the presence or in the absence of BRCA1-BARD1 E3 ubiquitin-protein ligase complex, catalyzes the synthesis of 'Lys-48'-linked polyubiquitin chains. Does not transfer ubiquitin directly to but elongates monoubiquitinated substrate protein. Mediates the selective degradation of short-lived and abnormal proteins, such as the endoplasmic reticulum-associated degradation (ERAD) of misfolded lumenal proteins. Ubiquitinates huntingtin. May mediate foam cell formation by the suppression of apoptosis of lipid-bearing macrophages through ubiquitination and subsequence degradation of p53/TP53 (By similarity). Proposed to be involved in ubiquitination and proteolytic processing of NF-kappa-B; in vitro supports ubiquitination of NFKB1.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P52484|UBC21_CAEEL Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=3 SV=3

 Score =  224 bits (571), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/199 (52%), Positives = 142/199 (71%), Gaps = 1/199 (0%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M+N+A  R+ R+ KEV  + ++ +  I +E+ ++N  ++KG I GP  TPY GG F +++
Sbjct: 15  MSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKV 74

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
            +PE YPF PPK KF+T+IWHPNISS TG ICLDILKD+W A++TLRTVLLSLQA++ + 
Sbjct: 75  DIPEHYPFEPPKAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSP 134

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSK-NPDFDSKIQRLTDMGVMSHDA 179
           EP DPQDAVVAKQ+  N  MFT TA +WT+ +A       PDF+ K+ RL +MG+   +A
Sbjct: 135 EPSDPQDAVVAKQFINNYPMFTATAVYWTSYFANSKKDVEPDFNRKVGRLIEMGIRETEA 194

Query: 180 RVALSTYNWELERATEAIF 198
            V LS  NW+LE+A + IF
Sbjct: 195 IVYLSCNNWKLEQALQFIF 213

Catalyzes the covalent attachment of ubiquitin to other proteins.

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1

 Score =  187 bits (474), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 130/192 (67%), Gaps = 6/192 (3%)

Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
           RI++E ++  ++++ +   I++    DN T L G I GP  TPYEGG F ++I +P+ YP
Sbjct: 6   RIQKELQDCERNQDSS--GIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYP 63

Query: 68  FNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQD 127
           F PPK++F TK+WHPNISS +GAICLDILKDQW+ A+TL+T L+S+QAL++A EP DPQD
Sbjct: 64  FEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQD 123

Query: 128 AVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYN 187
           AVVA+QY +N ++F  TAR+WT  +A    K    + K++RL +MG      R A+ +  
Sbjct: 124 AVVAEQYMKNYQVFVSTARYWTETFA----KKSSLEEKVKRLVEMGFGDAQVRSAIESSG 179

Query: 188 WELERATEAIFT 199
            +   A E + +
Sbjct: 180 GDENLALEKLCS 191

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|O74810|UBC1_SCHPO Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc1 PE=3 SV=2

 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 110/157 (70%), Gaps = 3/157 (1%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M++  ++RI +E  +V   ++  +  I++  I+D+ + LKG   GP  TPYEGG FV++I
Sbjct: 1   MSDNRSRRIAKELADV---QQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDI 57

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           ++P  YPF PPK+ F TKI+HPN+SS TGAICLDILKDQW+   T+++ L+SLQ+L+   
Sbjct: 58  EIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTP 117

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPS 157
           EP +PQDA VA+ Y +N + F  TAR WT+ YA  P+
Sbjct: 118 EPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAAAPA 154

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the HRD1 ubiquitin ligase complex, which is part of the ERAD-L and ERAD-M pathways responsible for the rapid degradation of soluble lumenal and membrane proteins with misfolded lumenal domains (ERAD-L), or ER-membrane proteins with misfolded transmembrane domains (ERAD-M).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P21734|UBC1_YEAST Ubiquitin-conjugating enzyme E2 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC1 PE=1 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 119/191 (62%), Gaps = 4/191 (2%)

Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           R KR  KE+   ++     I LE + + +   LKG   GPP TPYEGG FV++I+VP  Y
Sbjct: 3   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 62

Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           PF PPK++F TK++HPNISSVTGAICLDILK+ W+  +TL++ L+SLQAL+ + EP+DPQ
Sbjct: 63  PFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQ 122

Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTY 186
           DA VA+ Y  + E F  TA  WT +YA   S     + +    +D+  + HD      + 
Sbjct: 123 DAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVE---ESDLYGIDHDLIDEFESQ 179

Query: 187 NWELERATEAI 197
            +E ++  E +
Sbjct: 180 GFEKDKIVEVL 190

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the HRD1 ubiquitin ligase complex, which is part of the ERAD-L and ERAD-M pathways responsible for the rapid degradation of soluble lumenal and membrane proteins with misfolded lumenal domains (ERAD-L), or ER-membrane proteins with misfolded transmembrane domains (ERAD-M).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9EQX9|UBE2N_RAT Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 4/147 (2%)

Query: 7   QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           +RI +E + ++ +E V    IK E  + N       IAGP D+P+EGG F LE+ +PE Y
Sbjct: 6   RRIIKETQRLL-AEPVP--GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 62

Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           P   PKV+F+TKI+HPN+  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP 
Sbjct: 63  PMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121

Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
              VA+Q+K N      TAR WT +YA
Sbjct: 122 ANDVAEQWKSNEAQAIETARAWTRLYA 148

The UBE2V1-UBE2N and UBE2V2-UBE2N heterodimers catalyze the synthesis of non-canonical 'Lys-63'-linked polyubiquitin chains. This type of polyubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage. Acts together with the E3 ligases, HLTF and SHPRH, in the 'Lys-63'-linked poly-ubiquitination of PCNA upon genotoxic stress, which is required for DNA repair. Appears to act together with E3 ligase RNF5 in the 'Lys-63'-linked polyubiquitination of JKAMP thereby regulating JKAMP function by decreasing its association with components of the proteasome and ERAD.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q4R4I1|UBE2N_MACFA Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1

 Score =  134 bits (337), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 4/147 (2%)

Query: 7   QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           +RI +E + ++ +E V    IK E  + N       IAGP D+P+EGG F LE+ +PE Y
Sbjct: 6   RRIIKETQRLL-AEPVP--GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 62

Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           P   PKV+F+TKI+HPN+   +G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP 
Sbjct: 63  PMAAPKVRFMTKIYHPNVDK-SGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121

Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
              VA+Q+K N      TAR WT +YA
Sbjct: 122 ANDVAEQWKTNEAQAIETARAWTRLYA 148

The UBE2V1-UBE2N and UBE2V2-UBE2N heterodimers catalyze the synthesis of non-canonical 'Lys-63'-linked polyubiquitin chains. This type of polyubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage. Acts together with the E3 ligases, HLTF and SHPRH, in the 'Lys-63'-linked poly-ubiquitination of PCNA upon genotoxic stress, which is required for DNA repair. Appears to act together with E3 ligase RNF5 in the 'Lys-63'-linked polyubiquitination of JKAMP thereby regulating JKAMP function by decreasing its association with components of the proteasome and ERAD.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
240848551	199	ubiquitin-conjugating enzyme E2-25kD-lik	1.0	1.0	0.839	7e-96
383853187	199	PREDICTED: ubiquitin-conjugating enzyme	1.0	1.0	0.859	2e-93
110748673	199	PREDICTED: ubiquitin-conjugating enzyme	1.0	1.0	0.839	8e-92
427795629	232	Putative ubiquitin-protein ligase, parti	1.0	0.857	0.844	1e-91
346465869	242	hypothetical protein [Amblyomma maculatu	1.0	0.822	0.844	2e-91
307207321	200	Ubiquitin-conjugating enzyme E2-22 kDa [	0.979	0.975	0.871	3e-91
189235252	199	PREDICTED: similar to ubiquitin conjugat	1.0	1.0	0.834	4e-90
307166006	201	Ubiquitin-conjugating enzyme E2-22 kDa [	0.979	0.970	0.862	8e-90
332025602	201	Ubiquitin-conjugating enzyme E2-22 kDa [	0.979	0.970	0.857	2e-89
357631555	199	ubiquitin conjugating enzyme 4 [Danaus p	1.0	1.0	0.809	7e-88

>gi|240848551|ref|NP_001155723.1| ubiquitin-conjugating enzyme E2-25kD-like [Acyrthosiphon pisum] gi|239790683|dbj|BAH71888.1| ACYPI007620 [Acyrthosiphon pisum]

 Score =  355 bits (910), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 167/199 (83%), Positives = 182/199 (91%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M NIA QRIKREFKEVIKSEE+AKC+IK++LI D+YTELKGEIAGPPDTPYEGG F LEI
Sbjct: 1   MNNIATQRIKREFKEVIKSEELAKCSIKVDLIGDSYTELKGEIAGPPDTPYEGGTFFLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           KVPETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA
Sbjct: 61  KVPETYPFNPPKVRFMTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVAKQYKE PE+F  TA HWTNVYAGGP+KN +FD+KIQRL DMG+    AR
Sbjct: 121 EPDDPQDAVVAKQYKEYPEIFAKTASHWTNVYAGGPNKNSEFDTKIQRLIDMGIERDQAR 180

Query: 181 VALSTYNWELERATEAIFT 199
            ALSTYNW+LERATE +F+
Sbjct: 181 GALSTYNWDLERATEQLFS 199

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853187|ref|XP_003702104.1| PREDICTED: ubiquitin-conjugating enzyme E2-22 kDa-like [Megachile rotundata]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 171/199 (85%), Positives = 190/199 (95%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIAAQRIKREFKEVIKSEEVAKCAIK+EL++D++TELKGEIAGPPDTPYEGGNFVLEI
Sbjct: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKVELVNDSFTELKGEIAGPPDTPYEGGNFVLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           KVPETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL++AA
Sbjct: 61  KVPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLSAA 120

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVAKQYKE+PEMF  TA+HWT VYAGGP+K PD D KI+RLTDMG+  H+AR
Sbjct: 121 EPDDPQDAVVAKQYKEHPEMFRQTAKHWTFVYAGGPAKMPDLDDKIRRLTDMGIEEHNAR 180

Query: 181 VALSTYNWELERATEAIFT 199
           VALS+YNW+LERATE +F+
Sbjct: 181 VALSSYNWDLERATEQLFS 199

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110748673|ref|XP_001120470.1| PREDICTED: ubiquitin-conjugating enzyme E2-22 kDa-like [Apis mellifera] gi|340715519|ref|XP_003396259.1| PREDICTED: ubiquitin-conjugating enzyme E2-22 kDa-like isoform 1 [Bombus terrestris] gi|350406268|ref|XP_003487714.1| PREDICTED: ubiquitin-conjugating enzyme E2-22 kDa-like [Bombus impatiens] gi|380012913|ref|XP_003690517.1| PREDICTED: ubiquitin-conjugating enzyme E2-22 kDa-like [Apis florea]

 Score =  341 bits (875), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 167/199 (83%), Positives = 189/199 (94%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIAA RI+REFKEVI+SEEVAKCAIK+EL++D++TELKGEIAGPPDTPYEGGNFVLEI
Sbjct: 1   MANIAALRIQREFKEVIRSEEVAKCAIKVELVNDSFTELKGEIAGPPDTPYEGGNFVLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           KVPETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL++AA
Sbjct: 61  KVPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLSAA 120

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA+QYKE+PEMF  TA+HWT VYAGGP+K PD D KI+RLTDMG+  H+AR
Sbjct: 121 EPDDPQDAVVARQYKEHPEMFRQTAKHWTYVYAGGPAKMPDLDDKIRRLTDMGIEEHNAR 180

Query: 181 VALSTYNWELERATEAIFT 199
           VALS+YNW+LERATE +F+
Sbjct: 181 VALSSYNWDLERATEQLFS 199

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427795629|gb|JAA63266.1| Putative ubiquitin-protein ligase, partial [Rhipicephalus pulchellus]

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 168/199 (84%), Positives = 186/199 (93%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEEVAKCAIK+EL++DNYTEL+GEIAGPPDTPYEGG FVLEI
Sbjct: 34  MANIAVQRIKREFKEVVKSEEVAKCAIKVELVNDNYTELRGEIAGPPDTPYEGGTFVLEI 93

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
            VPETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 94  HVPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 153

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA+Q+KENPEMF LTA+HW  VYAGGP   PDFD+KI+RL DMGV  H AR
Sbjct: 154 EPDDPQDAVVARQFKENPEMFKLTAQHWAQVYAGGPKHFPDFDAKIKRLLDMGVEEHRAR 213

Query: 181 VALSTYNWELERATEAIFT 199
           VALS+Y+W+LE+ATEAIF+
Sbjct: 214 VALSSYSWDLEKATEAIFS 232

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346465869|gb|AEO32779.1| hypothetical protein [Amblyomma maculatum]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 168/199 (84%), Positives = 186/199 (93%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEEVAKCAIK+EL++DNYTEL+GEIAGPPDTPYEGG FVLEI
Sbjct: 44  MANIAVQRIKREFKEVVKSEEVAKCAIKVELVNDNYTELRGEIAGPPDTPYEGGTFVLEI 103

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
            VPETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 104 HVPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 163

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA+Q+KENPEMF LTA+HW  VYAGGP   PDFD+KI+RL DMGV  H AR
Sbjct: 164 EPDDPQDAVVARQFKENPEMFKLTAQHWAQVYAGGPKHFPDFDAKIKRLLDMGVEEHRAR 223

Query: 181 VALSTYNWELERATEAIFT 199
           VALS+Y+W+LE+ATEAIF+
Sbjct: 224 VALSSYSWDLEKATEAIFS 242

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207321|gb|EFN85071.1| Ubiquitin-conjugating enzyme E2-22 kDa [Harpegnathos saltator]

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 170/195 (87%), Positives = 184/195 (94%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIAAQRIKREFKEVIKSEEVAKCAIK+EL++D+ TELKGEIAGPPDTPYEGGNFVLEI
Sbjct: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKVELVNDSLTELKGEIAGPPDTPYEGGNFVLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           KVPETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL++AA
Sbjct: 61  KVPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLSAA 120

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVAKQYKE+PEMF  TA HWT VYAGGP+K PD D KI+RLTDMG+  H AR
Sbjct: 121 EPDDPQDAVVAKQYKEHPEMFRQTATHWTFVYAGGPAKIPDLDDKIRRLTDMGIEEHSAR 180

Query: 181 VALSTYNWELERATE 195
           VALS+YNW+LERATE
Sbjct: 181 VALSSYNWDLERATE 195

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235252|ref|XP_971328.2| PREDICTED: similar to ubiquitin conjugating enzyme-like protein [Tribolium castaneum] gi|270004126|gb|EFA00574.1| hypothetical protein TcasGA2_TC003444 [Tribolium castaneum]

 Score =  336 bits (861), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 166/199 (83%), Positives = 184/199 (92%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIAAQRI+REFKEVIKSEEVAKCAIK+EL++D+YTELKGEI GPPDT YEGG FVLEI
Sbjct: 1   MANIAAQRIRREFKEVIKSEEVAKCAIKVELLNDSYTELKGEITGPPDTAYEGGTFVLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           KVPETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL++AA
Sbjct: 61  KVPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLSAA 120

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVAKQ+KEN EMF +TARHWTNVYAGGP  N + D KI+RL DMGV  H AR
Sbjct: 121 EPDDPQDAVVAKQFKENIEMFQMTARHWTNVYAGGPHVNKECDDKIKRLVDMGVEEHQAR 180

Query: 181 VALSTYNWELERATEAIFT 199
           VALS+YNW++ERATE +F+
Sbjct: 181 VALSSYNWDIERATEQLFS 199

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166006|gb|EFN60302.1| Ubiquitin-conjugating enzyme E2-22 kDa [Camponotus floridanus]

 Score =  335 bits (858), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 169/196 (86%), Positives = 185/196 (94%), Gaps = 1/196 (0%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIAAQRIKREFKEVIKSEE+AKCAIK+EL++D+ TELKGEIAGPPDTPYEGGNFVLEI
Sbjct: 1   MANIAAQRIKREFKEVIKSEEIAKCAIKVELVNDSLTELKGEIAGPPDTPYEGGNFVLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQW-AAAMTLRTVLLSLQALMAA 119
           KVPETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQW AAAMTLRTVLLSLQAL++A
Sbjct: 61  KVPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWQAAAMTLRTVLLSLQALLSA 120

Query: 120 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDA 179
           AEPDDPQDAVVAKQYKE+PEMF  TA HWT VYAGGP+K PD D KI+RLTDMG+  H+A
Sbjct: 121 AEPDDPQDAVVAKQYKEHPEMFRQTATHWTFVYAGGPAKMPDLDDKIRRLTDMGIEEHNA 180

Query: 180 RVALSTYNWELERATE 195
           RVALS+YNW+LERATE
Sbjct: 181 RVALSSYNWDLERATE 196

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025602|gb|EGI65764.1| Ubiquitin-conjugating enzyme E2-22 kDa [Acromyrmex echinatior]

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 168/196 (85%), Positives = 185/196 (94%), Gaps = 1/196 (0%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIAAQRIKREFKEVIKSEE+AKCAIK+EL++D+ TELKGEIAGPPDTPYEGGNFVLEI
Sbjct: 1   MANIAAQRIKREFKEVIKSEEIAKCAIKVELVNDSLTELKGEIAGPPDTPYEGGNFVLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQW-AAAMTLRTVLLSLQALMAA 119
           KVPETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQW AAAMTLRTVLLSLQAL++A
Sbjct: 61  KVPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWQAAAMTLRTVLLSLQALLSA 120

Query: 120 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDA 179
           AEPDDPQDAVVAKQYKE+PE+F  TA HWT VYAGGP+K PD D KI+RLTDMG+  H+A
Sbjct: 121 AEPDDPQDAVVAKQYKEHPELFRQTATHWTFVYAGGPAKMPDLDDKIRRLTDMGIEEHNA 180

Query: 180 RVALSTYNWELERATE 195
           RVALS+YNW+LERATE
Sbjct: 181 RVALSSYNWDLERATE 196

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357631555|gb|EHJ79025.1| ubiquitin conjugating enzyme 4 [Danaus plexippus]

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 161/199 (80%), Positives = 186/199 (93%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIAA+RIKREFKEV+KSEEVA  AIKLEL++D++TEL+GEIAGP DTPYEGG FVLEI
Sbjct: 1   MANIAAKRIKREFKEVMKSEEVAGGAIKLELVNDSWTELQGEIAGPSDTPYEGGTFVLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           KVPETYPFNPPK++F+TKIWHPN+SSVTGAICLDILKDQWAAA+TLRTVLLSLQAL++AA
Sbjct: 61  KVPETYPFNPPKIRFVTKIWHPNVSSVTGAICLDILKDQWAAALTLRTVLLSLQALLSAA 120

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EP+DPQDAVVAKQYKENP++F +TARHWTNVYAGGP+   +F+ K+QRL DMGV  HDAR
Sbjct: 121 EPNDPQDAVVAKQYKENPQLFHMTARHWTNVYAGGPASIVEFNQKVQRLLDMGVDEHDAR 180

Query: 181 VALSTYNWELERATEAIFT 199
           VALSTY+WELERATE +F+
Sbjct: 181 VALSTYDWELERATEQLFS 199

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
FB|FBgn0015321	199	UbcD4 "Ubiquitin conjugating e	1.0	1.0	0.753	2.8e-82
ZFIN|ZDB-GENE-980605-9	200	ube2kb "ubiquitin-conjugating	1.0	0.995	0.728	4.3e-77
UNIPROTKB|P61085	200	UBE2K "Ubiquitin-conjugating e	1.0	0.995	0.723	1.1e-76
UNIPROTKB|E2R6W9	200	UBE2K "Uncharacterized protein	1.0	0.995	0.723	1.1e-76
UNIPROTKB|P61086	200	UBE2K "Ubiquitin-conjugating e	1.0	0.995	0.723	1.1e-76
UNIPROTKB|Q06AB2	200	UBE2K "Uncharacterized protein	1.0	0.995	0.723	1.1e-76
MGI|MGI:1858216	200	Ube2k "ubiquitin-conjugating e	1.0	0.995	0.723	1.1e-76
ZFIN|ZDB-GENE-050320-48	200	ube2ka "ubiquitin-conjugating	1.0	0.995	0.713	4.5e-75
UNIPROTKB|J9NW86	200	UBE2K "Uncharacterized protein	0.989	0.985	0.659	1.1e-69
UNIPROTKB|F1NNF1	187	UBE2K "Uncharacterized protein	0.924	0.983	0.706	2.4e-69

FB|FBgn0015321 UbcD4 "Ubiquitin conjugating enzyme 4" [Drosophila melanogaster (taxid:7227)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 150/199 (75%), Positives = 176/199 (88%)

Query:     1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
             MAN+A  RIKREFKEV++SEE+ +C+IK+EL++D++TEL+GEIAGPPDTPYEGG FVLEI
Sbjct:     1 MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEI 60

Query:    61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             KVPETYPFNPPKV+F+T+IWHPNISSVTGAICLDILKD WAAAMTLRTVLLSLQAL+AAA
Sbjct:    61 KVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAA 120

Query:   121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
             EPDDPQDAVVA Q+K+  ++F LTA+HWTN YAGGP   PD DSKIQRL DMG+  H+AR
Sbjct:   121 EPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGGPHTFPDCDSKIQRLRDMGIDEHEAR 180

Query:   181 VALSTYNWELERATEAIFT 199
               LS  NW LE+ATE +F+
Sbjct:   181 AVLSKENWNLEKATEGLFS 199

GO:0004842 "ubiquitin-protein ligase activity" evidence=NAS

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

ZFIN|ZDB-GENE-980605-9 ube2kb "ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast)" [Danio rerio (taxid:7955)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 145/199 (72%), Positives = 171/199 (85%)

Query:     1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
             MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TELKGEIAGPPDTPYEGG + LEI
Sbjct:     1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELKGEIAGPPDTPYEGGRYQLEI 60

Query:    61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct:    61 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 120

Query:   121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
             EPDDPQDAVVA QYK+NPEMF  TAR W++VYAG P  +P++  KI +L  MG   +   
Sbjct:   121 EPDDPQDAVVANQYKQNPEMFKQTARLWSHVYAGAPVSSPEYTRKIDKLCAMGFDKNAVI 180

Query:   181 VALSTYNWELERATEAIFT 199
             VALS+ +W++E ATE + +
Sbjct:   181 VALSSKSWDVETATELLLS 199

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|P61085 UBE2K "Ubiquitin-conjugating enzyme E2 K" [Bos taurus (taxid:9913)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 144/199 (72%), Positives = 170/199 (85%)

Query:     1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
             MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct:     1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query:    61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct:    61 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 120

Query:   121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
             EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   
Sbjct:   121 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 180

Query:   181 VALSTYNWELERATEAIFT 199
             VALS+ +W++E ATE + +
Sbjct:   181 VALSSKSWDVETATELLLS 199

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2R6W9 UBE2K "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 144/199 (72%), Positives = 170/199 (85%)

Query:     1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
             MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct:     1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query:    61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct:    61 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 120

Query:   121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
             EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   
Sbjct:   121 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 180

Query:   181 VALSTYNWELERATEAIFT 199
             VALS+ +W++E ATE + +
Sbjct:   181 VALSSKSWDVETATELLLS 199

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|P61086 UBE2K "Ubiquitin-conjugating enzyme E2 K" [Homo sapiens (taxid:9606)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 144/199 (72%), Positives = 170/199 (85%)

Query:     1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
             MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct:     1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query:    61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct:    61 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 120

Query:   121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
             EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   
Sbjct:   121 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 180

Query:   181 VALSTYNWELERATEAIFT 199
             VALS+ +W++E ATE + +
Sbjct:   181 VALSSKSWDVETATELLLS 199

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IDA

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

UNIPROTKB|Q06AB2 UBE2K "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 144/199 (72%), Positives = 170/199 (85%)

Query:     1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
             MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct:     1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query:    61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct:    61 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 120

Query:   121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
             EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   
Sbjct:   121 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 180

Query:   181 VALSTYNWELERATEAIFT 199
             VALS+ +W++E ATE + +
Sbjct:   181 VALSSKSWDVETATELLLS 199

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

MGI|MGI:1858216 Ube2k "ubiquitin-conjugating enzyme E2K" [Mus musculus (taxid:10090)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 144/199 (72%), Positives = 170/199 (85%)

Query:     1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
             MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct:     1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query:    61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct:    61 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 120

Query:   121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
             EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   
Sbjct:   121 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 180

Query:   181 VALSTYNWELERATEAIFT 199
             VALS+ +W++E ATE + +
Sbjct:   181 VALSSKSWDVETATELLLS 199

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;IMP

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=ISO

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

ZFIN|ZDB-GENE-050320-48 ube2ka "ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast)" [Danio rerio (taxid:7955)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 142/199 (71%), Positives = 169/199 (84%)

Query:     1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
             MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct:     1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query:    61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILK QWAAAMTLRTVLLSLQAL+AAA
Sbjct:    61 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKGQWAAAMTLRTVLLSLQALLAAA 120

Query:   121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
             EPDDPQDAVVA QYK+NPEMF  TAR W++V AG P  +P++  KI +L  MG   +   
Sbjct:   121 EPDDPQDAVVANQYKQNPEMFKQTARLWSHVCAGAPVSSPEYTRKIDKLCAMGFDKNAVI 180

Query:   181 VALSTYNWELERATEAIFT 199
             VALS+ +W++E ATE + +
Sbjct:   181 VALSSKSWDVEAATELLLS 199

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|J9NW86 UBE2K "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 130/197 (65%), Positives = 162/197 (82%)

Query:     3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKV 62
             N++ + + R++   IK+ E +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEIK+
Sbjct:     3 NVSGELVCRQWCYFIKNNETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 62

Query:    63 PETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 122
             PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEP
Sbjct:    63 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 122

Query:   123 DDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVA 182
             DDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   VA
Sbjct:   123 DDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVA 182

Query:   183 LSTYNWELERATEAIFT 199
             LS+ +W++E ATE + +
Sbjct:   183 LSSKSWDVETATELLLS 199

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|F1NNF1 UBE2K "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 130/184 (70%), Positives = 156/184 (84%)

Query:    16 VIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKF 75
             V+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEIK+PETYPFNPPKV+F
Sbjct:     3 VLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF 62

Query:    76 LTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYK 135
             +TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDAVVA QYK
Sbjct:    63 ITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYK 122

Query:   136 ENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATE 195
             +NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   VALS+ +W++E ATE
Sbjct:   123 QNPEMFKQTARLWAHVYAGAPVSSPEYTRKIENLCAMGFDRNAVIVALSSKSWDVETATE 182

Query:   196 AIFT 199
              + +
Sbjct:   183 LLLS 186

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61087	UBE2K_MOUSE	6, ., 3, ., 2, ., 1, 9	0.7236	1.0	0.995	yes	N/A
P61086	UBE2K_HUMAN	6, ., 3, ., 2, ., 1, 9	0.7236	1.0	0.995	yes	N/A
P61085	UBE2K_BOVIN	6, ., 3, ., 2, ., 1, 9	0.7236	1.0	0.995	yes	N/A
Q86K32	UBE2N_DICDI	6, ., 3, ., 2, ., 1, 9	0.5158	0.6281	0.8116	yes	N/A
P21734	UBC1_YEAST	6, ., 3, ., 2, ., 1, 9	0.4397	0.9396	0.8697	yes	N/A
P52484	UBC21_CAEEL	6, ., 3, ., 2, ., 1, 9	0.5226	0.9949	0.9252	no	N/A
P52486	UBCD4_DROME	6, ., 3, ., 2, ., 1, 9	0.7537	1.0	1.0	yes	N/A
Q9FI61	UBC27_ARATH	6, ., 3, ., 2, ., 1, 9	0.4635	0.9346	0.9687	yes	N/A
O74810	UBC1_SCHPO	6, ., 3, ., 2, ., 1, 9	0.4840	0.7738	0.7096	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.979
3rd Layer	6.3.2	0.983

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	199
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	3e-60
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	1e-59
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	2e-55
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	1e-53
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	1e-49
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	1e-39
cd00194	38	cd00194, UBA, Ubiquitin Associated domain	5e-04
smart00165	37	smart00165, UBA, Ubiquitin associated domain	0.001

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  184 bits (469), Expect = 3e-60
 Identities = 75/144 (52%), Positives = 94/144 (65%), Gaps = 5/144 (3%)

Query: 7   QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           +R+++E K++ K        I  E +++N  E  G I GPPDTPYEGG F L+I+ PE Y
Sbjct: 2   KRLQKELKDLKKDPPSG---ISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDY 58

Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRTVLLSLQALMAAAEPDDP 125
           PF PPKV+F+TKI+HPN+    G ICL ILK   W+ A TLRTVLLSLQ+L+    P DP
Sbjct: 59  PFKPPKVRFVTKIYHPNV-DENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDP 117

Query: 126 QDAVVAKQYKENPEMFTLTARHWT 149
            +A  AK YKEN E F   AR WT
Sbjct: 118 LNAEAAKLYKENREEFKKKAREWT 141

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  182 bits (464), Expect = 1e-59
 Identities = 68/143 (47%), Positives = 93/143 (65%), Gaps = 5/143 (3%)

Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
           R+++E KE++K        I    +DDN  E +  I GP  TPYEGG F L+I+ PE YP
Sbjct: 1   RLQKELKELLKD---PPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYP 57

Query: 68  FNPPKVKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           F PPKVKF TKI+HPN+   +G ICLDILKD+ W+ A+T+  VLLS+Q+L++   P+DP 
Sbjct: 58  FKPPKVKFTTKIYHPNVDP-SGEICLDILKDENWSPALTIEQVLLSIQSLLSEPNPEDPL 116

Query: 127 DAVVAKQYKENPEMFTLTARHWT 149
           +A  AK Y++N E F    R + 
Sbjct: 117 NAEAAKLYRKNREEFEKKVREYV 139

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  172 bits (438), Expect = 2e-55
 Identities = 77/148 (52%), Positives = 97/148 (65%), Gaps = 4/148 (2%)

Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
           R+ +E KE+ K       A    + D+N  E  G I GPP TPYEGG F L I+ PE YP
Sbjct: 1   RLLKELKELRKDPPPGFTAY--PVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYP 58

Query: 68  FNPPKVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           F PPKVKF+TKI+HPN+ S +G ICLDILK ++W+ A+TL TVLLSLQ+L++   PD P 
Sbjct: 59  FKPPKVKFITKIYHPNVDS-SGEICLDILKQEKWSPALTLETVLLSLQSLLSEPNPDSPL 117

Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYAG 154
           +A  A+ YK+N E F   AR WT  YA 
Sbjct: 118 NADAAELYKKNREEFKKKAREWTKKYAE 145

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  168 bits (427), Expect = 1e-53
 Identities = 66/153 (43%), Positives = 92/153 (60%), Gaps = 3/153 (1%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
            +  A +R+ +E K++ K       +    + DDN    +  I GPPDTPYEGG F L +
Sbjct: 2   SSPSALKRLLKELKKLQKDP-PPGISAGP-VDDDNLFHWEATITGPPDTPYEGGIFKLTL 59

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           + PE YPF PPKV+F TKI+HPN+   +G +CLDILKD+W+   TL T+LLSLQ+L+ + 
Sbjct: 60  EFPEDYPFKPPKVRFTTKIFHPNVDP-SGNVCLDILKDRWSPVYTLETILLSLQSLLLSP 118

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            PD P +   A  Y+E+ E +    R W   YA
Sbjct: 119 NPDSPLNTEAATLYREDKEEYEKKVREWVKKYA 151

Length = 153

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score =  158 bits (400), Expect = 1e-49
 Identities = 73/146 (50%), Positives = 88/146 (60%), Gaps = 1/146 (0%)

Query: 10  KREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFN 69
           KR  KE           IK E    NY   K  + GP  TPYEGG + LE+ +PE YP  
Sbjct: 5   KRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPME 64

Query: 70  PPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAV 129
           PPKV+FLTKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A EPDDP D  
Sbjct: 65  PPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTS 123

Query: 130 VAKQYKENPEMFTLTARHWTNVYAGG 155
           VA  +K N       AR W   YA  
Sbjct: 124 VADHFKNNRADAEKVAREWNQKYAKH 149

Length = 152

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score =  132 bits (332), Expect = 1e-39
 Identities = 69/150 (46%), Positives = 96/150 (64%), Gaps = 4/150 (2%)

Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI++E K+++K +  + C+      D+N       I GP D+PY GG F L I  P
Sbjct: 1   MATKRIQKEHKDLLK-DPPSNCSAGP--SDENLFRWTASIIGPSDSPYAGGVFFLSILFP 57

Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPKV+F TKI+HPNI+S  G+ICLDIL+DQW+ A+T+  VLLS+ +L+    PD
Sbjct: 58  PDYPFKPPKVQFTTKIYHPNINS-NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPD 116

Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP    +A+ +KEN   +  TAR WT  YA
Sbjct: 117 DPLVPEIARVFKENRSRYEATAREWTQRYA 146

Length = 147

>gnl|CDD|238116 cd00194, UBA, Ubiquitin Associated domain

 Score = 35.9 bits (84), Expect = 5e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198
           + K+++L +MG    +AR AL   N  +ERA E + 
Sbjct: 2   EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLL 37

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins. Length = 38

>gnl|CDD|197551 smart00165, UBA, Ubiquitin associated domain

 Score = 34.8 bits (81), Expect = 0.001
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198
           + KI +L +MG    +A  AL   N  +ERA E + 
Sbjct: 2   EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL 37

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin. Length = 37

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
KOG0418|consensus	200		100.0
KOG0417|consensus	148		100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
KOG0419|consensus	152		100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0424|consensus	158		100.0
KOG0425|consensus	171		100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
KOG0426|consensus	165		100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0421|consensus	175		100.0
KOG0422|consensus	153		100.0
KOG0416|consensus	189		100.0
KOG0420|consensus	184		100.0
KOG0423|consensus	223		100.0
KOG0427|consensus	161		99.96
KOG0894|consensus	244		99.94
KOG0429|consensus	258		99.91
KOG0428|consensus	314		99.83
KOG0895|consensus	1101		99.7
KOG0895|consensus	1101		99.61
KOG0896|consensus	138		99.56
KOG0897|consensus	122		98.85
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.62
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	98.35
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	98.09
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	98.01
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	97.96
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	97.91
KOG2391|consensus	365		97.66
KOG3357|consensus	167		97.14
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	96.33
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	95.96
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	95.89
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	95.58
smart00591	107	RWD domain in RING finger and WD repeat containing	94.78
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	94.55
KOG0011|consensus	340		93.5
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	92.32
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	89.38
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	89.02
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	88.88
KOG0309|consensus	1081		86.5
smart00546	43	CUE Domain that may be involved in binding ubiquit	85.23
KOG4018|consensus	215		83.76

>KOG0418|consensus

Probab=100.00  E-value=1e-55  Score=341.62  Aligned_cols=198  Identities=59%  Similarity=0.981  Sum_probs=191.4

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      |++ +.+||++|++++.++.+....||.++..++|+.+..+.|.||++|||+||+|.+.|.+|++|||+||+|+|.|+||
T Consensus         1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw   79 (200)
T KOG0418|consen    1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW   79 (200)
T ss_pred             Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence            788 8999999999999876666899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC-CCC
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP-SKN  159 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~-~~~  159 (199)
                      ||||.+.+|.||+|+|++.|++++|++++|.+||++|..|++.+|.+.+.|++|.++++.|.++||.|+..||+++ ..+
T Consensus        80 HPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~~~~~  159 (200)
T KOG0418|consen   80 HPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGRLPDD  159 (200)
T ss_pred             cCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999995 458


Q ss_pred             cchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +.+.+++.+|++|||+++.++++|+..+|++.+|.|++|+
T Consensus       160 ~~~~~~v~~l~~mGf~~~~~i~~L~~~~w~~~~a~~~~~s  199 (200)
T KOG0418|consen  160 PWDKKKVDSLIEMGFSELEAILVLSGSDWNLADATEQLLS  199 (200)
T ss_pred             chhHHHHHHHHHhcccHHHHHHHhhccccchhhhhHhhcc
Confidence            8899999999999999999999999999999999999975

>KOG0417|consensus

Probab=100.00  E-value=9.9e-53  Score=315.83  Aligned_cols=147  Identities=48%  Similarity=0.882  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487          5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI   84 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   84 (199)
                      +.+||.+|+++|.+.   ++.|+.+.+.++|+++|+++|.||.+|||+||+|++.|.||++||++||+|+|.|+||||||
T Consensus         2 a~~RI~kE~~~l~~d---p~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI   78 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRD---PPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNI   78 (148)
T ss_pred             cHHHHHHHHHHHhcC---CCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCc
Confidence            467999999999875   56889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         85 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        85 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                      + ..|.||+|+|++.|+|+++|.+||++|++||.+||+++|++.++|.+|+.|+.+|.++||+|+++||++
T Consensus        79 ~-~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~  148 (148)
T KOG0417|consen   79 D-SNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG  148 (148)
T ss_pred             C-ccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence            9 699999999999999999999999999999999999999999999999999999999999999999974

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-51  Score=316.06  Aligned_cols=148  Identities=45%  Similarity=0.853  Sum_probs=143.1

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      +.|.+||++|++.|+++   ++.++++.+.++ |+++|+++|.||++|||+||+|++.|.||++||++||+|+|+|+|||
T Consensus         4 ~~a~~RL~kE~~~l~~~---~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H   80 (153)
T COG5078           4 PSALKRLLKELKKLQKD---PPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH   80 (153)
T ss_pred             hhHHHHHHHHHHHHhcC---CCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence            44899999999999986   578999999988 99999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      |||| .+|.||+++|.+.|+|++++++||.+|+++|.+||+++|+|.|||++|++|+++|.++||+|+++|+.
T Consensus        81 PNV~-~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078          81 PNVD-PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             CCcC-CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence            9999 69999999999999999999999999999999999999999999999999999999999999999875

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=1.8e-48  Score=301.39  Aligned_cols=148  Identities=49%  Similarity=0.839  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487          5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI   84 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   84 (199)
                      +++||++|+++|.++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         3 ~~kRl~~E~~~l~~~---~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV   79 (152)
T PTZ00390          3 ISKRIEKETQNLAND---PPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI   79 (152)
T ss_pred             HHHHHHHHHHHHHhC---CCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence            589999999999886   56789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487         85 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP  156 (199)
Q Consensus        85 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~  156 (199)
                      +. +|.||+++|.++|+|++|+++||++|+++|.+|++++|+|.+||++|++|++.|.++|++|+++||.+.
T Consensus        80 ~~-~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~~  150 (152)
T PTZ00390         80 DK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKHN  150 (152)
T ss_pred             CC-CCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhccc
Confidence            95 999999999999999999999999999999999999999999999999999999999999999999853

>KOG0419|consensus

Probab=100.00  E-value=2.4e-48  Score=284.57  Aligned_cols=148  Identities=32%  Similarity=0.695  Sum_probs=142.9

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      |+.-|.+||.++++.|+++   ++.|++..|.++|+..|.++|+||.+|||+||+|++.|.|+++||.+||.|+|++.+|
T Consensus         1 MstpArrrLmrDfkrlqed---pp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mF   77 (152)
T KOG0419|consen    1 MSTPARRRLMRDFKRLQED---PPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMF   77 (152)
T ss_pred             CCchHHHHHHHHHHHhhcC---CCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeecc
Confidence            8888999999999999886   7899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHh
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVY  152 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~  152 (199)
                      |||||. +|.||+|+|...|+|.|++.+||.+||+||.+||+++|+|.+||++|++|+.+|.+++|..+.+.
T Consensus        78 HPNvya-~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs  148 (152)
T KOG0419|consen   78 HPNVYA-DGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS  148 (152)
T ss_pred             CCCcCC-CCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence            999995 89999999999999999999999999999999999999999999999999999999999877653

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=9.9e-48  Score=295.98  Aligned_cols=145  Identities=47%  Similarity=0.868  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487          5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI   84 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   84 (199)
                      |.+||++|+++|+++   ++.++.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||
T Consensus         2 a~~Rl~kE~~~l~~~---~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv   78 (147)
T PLN00172          2 ATKRIQKEHKDLLKD---PPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNI   78 (147)
T ss_pred             hHHHHHHHHHHHHhC---CCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceE
Confidence            479999999999986   56789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487         85 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA  153 (199)
Q Consensus        85 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a  153 (199)
                      +. +|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|.+|+++|.++|++|+++||
T Consensus        79 ~~-~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a  146 (147)
T PLN00172         79 NS-NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA  146 (147)
T ss_pred             CC-CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            95 999999999999999999999999999999999999999999999999999999999999999987

>KOG0424|consensus

Probab=100.00  E-value=8e-44  Score=264.46  Aligned_cols=150  Identities=29%  Similarity=0.581  Sum_probs=142.8

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCC-----CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-----NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKF   75 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-----n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f   75 (199)
                      ||..+..||+.|-+.+.+.   .+.|+++.|...     |+..|+|.|.|+.+|+|+||.|.+++.||++||.+||+++|
T Consensus         1 ~s~~~~~rl~eErk~wrk~---hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF   77 (158)
T KOG0424|consen    1 MSGIALNRLAEERKKWRKD---HPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKF   77 (158)
T ss_pred             CcchHHHHHHHHHHHHhhc---CCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCcccc
Confidence            8889999999999999986   788999988652     89999999999999999999999999999999999999999


Q ss_pred             ccccccCCccCCCCeeeccCchh--hhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487         76 LTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA  153 (199)
Q Consensus        76 ~t~i~HPnV~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a  153 (199)
                      .+++||||||+ +|.|||++|.+  +|+|+.||.+||.+||.||.+||+.+|+|.||...|.+|+.+|+++||.++++||
T Consensus        78 ~~pl~HPNVyp-sgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a  156 (158)
T KOG0424|consen   78 KPPLFHPNVYP-SGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYA  156 (158)
T ss_pred             CCCCcCCCcCC-CCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhc
Confidence            99999999997 99999999954  4999999999999999999999999999999999999999999999999999997


Q ss_pred             C
Q psy17487        154 G  154 (199)
Q Consensus       154 ~  154 (199)
                      .
T Consensus       157 ~  157 (158)
T KOG0424|consen  157 K  157 (158)
T ss_pred             c
Confidence            5

>KOG0425|consensus

Probab=100.00  E-value=3.1e-43  Score=264.86  Aligned_cols=146  Identities=33%  Similarity=0.692  Sum_probs=137.4

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      +++..-|+++|++|++.   +..|+.+...++ |+++|.+.|+||++|.|+||.|+..+.||.+||.+||+++|.|+|||
T Consensus         4 ~~a~~ll~~qlk~L~~~---pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH   80 (171)
T KOG0425|consen    4 SQASLLLLKQLKELQEE---PVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH   80 (171)
T ss_pred             chhHHHHHHHHHHHhcC---CCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence            45678899999999886   678999988877 99999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCc-------------hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHH
Q psy17487         82 PNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHW  148 (199)
Q Consensus        82 PnV~~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~  148 (199)
                      |||| ++|.+|+++|             .+.|+|.+|+++||++|.+||.+||.++|+|.+||+.|++++++|.++++.+
T Consensus        81 PNvy-~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~  159 (171)
T KOG0425|consen   81 PNVY-EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRC  159 (171)
T ss_pred             CCcC-CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHH
Confidence            9999 5999999999             1469999999999999999999999999999999999999999999999999


Q ss_pred             HHHh
Q psy17487        149 TNVY  152 (199)
Q Consensus       149 ~~~~  152 (199)
                      +++.
T Consensus       160 vr~s  163 (171)
T KOG0425|consen  160 VRRS  163 (171)
T ss_pred             HHHH
Confidence            9763

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=8e-42  Score=261.12  Aligned_cols=138  Identities=45%  Similarity=0.864  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCccC
Q psy17487          8 RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISS   86 (199)
Q Consensus         8 RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   86 (199)
                      ||++|+++++++   ++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+ 
T Consensus         1 Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-   76 (140)
T PF00179_consen    1 RLQKELKELQKN---PPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-   76 (140)
T ss_dssp             HHHHHHHHHHHS---HTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--
T ss_pred             CHHHHHHHHhhC---CCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-
Confidence            899999999886   678999999887 999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCeeeccCchh-hhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHH
Q psy17487         87 VTGAICLDILKD-QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT  149 (199)
Q Consensus        87 ~~G~icl~~l~~-~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~  149 (199)
                      .+|.||+++|.. .|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|.
T Consensus        77 ~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~  140 (140)
T PF00179_consen   77 ENGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA  140 (140)
T ss_dssp             TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred             ccccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence            699999999964 599999999999999999999999999999999999999999999999984

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=3.9e-41  Score=257.66  Aligned_cols=139  Identities=54%  Similarity=0.975  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCccC
Q psy17487          7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISS   86 (199)
Q Consensus         7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   86 (199)
                      +||++|+++++++   ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+++|||||+ 
T Consensus         2 ~Rl~~E~~~l~~~---~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-   77 (141)
T cd00195           2 KRLQKELKDLKKD---PPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-   77 (141)
T ss_pred             chHHHHHHHHHhC---CCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-
Confidence            7999999999886   567999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCeeeccCchhh-hhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHH
Q psy17487         87 VTGAICLDILKDQ-WAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT  149 (199)
Q Consensus        87 ~~G~icl~~l~~~-W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~  149 (199)
                      .+|.||+++|... |+|++++.+||.+|+++|.+|+.++|+|.+||++|++|+++|.++|+.|+
T Consensus        78 ~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~  141 (141)
T cd00195          78 ENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT  141 (141)
T ss_pred             CCCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence            6999999999666 99999999999999999999999999999999999999999999999874

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0426|consensus

Probab=100.00  E-value=3.5e-41  Score=247.06  Aligned_cols=148  Identities=30%  Similarity=0.603  Sum_probs=139.7

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecC-CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELID-DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI   79 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   79 (199)
                      |+..|+|||.+||++|..+   ++.||...|.+ ||+++|.+.|.||++|+|+||+|..++.||.+||.+||+++|...+
T Consensus         1 m~~~AlkRLm~EykqLt~~---~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~   77 (165)
T KOG0426|consen    1 MAGTALKRLMAEYKQLTLN---PPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEM   77 (165)
T ss_pred             CchhHHHHHHHHHHHHccC---CCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeeccc
Confidence            7889999999999999886   78899888765 5999999999999999999999999999999999999999999999


Q ss_pred             ccCCccCCCCeeeccCc-------------hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHH
Q psy17487         80 WHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTAR  146 (199)
Q Consensus        80 ~HPnV~~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak  146 (199)
                      |||||+. +|+||+++|             .+.|+|.++++.||+++.++|.+||.+++.|.+|+.++++|+++|.+.|+
T Consensus        78 fHPNiy~-dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~  156 (165)
T KOG0426|consen   78 FHPNIYP-DGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAK  156 (165)
T ss_pred             ccCcccC-CCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHH
Confidence            9999995 999999998             15699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy17487        147 HWTNVY  152 (199)
Q Consensus       147 ~~~~~~  152 (199)
                      ..++|.
T Consensus       157 ~lvrKt  162 (165)
T KOG0426|consen  157 RLVRKT  162 (165)
T ss_pred             HHHHHh
Confidence            888764

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=2.4e-40  Score=254.41  Aligned_cols=143  Identities=52%  Similarity=0.938  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCcc
Q psy17487          7 QRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNIS   85 (199)
Q Consensus         7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   85 (199)
                      +||++|++++++.   .+.|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+++|||||+
T Consensus         1 ~Rl~~E~~~~~~~---~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~   77 (145)
T smart00212        1 KRLLKELKELLKD---PPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD   77 (145)
T ss_pred             ChHHHHHHHHHhC---CCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence            5999999999886   567898888776 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeccCch-hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487         86 SVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA  153 (199)
Q Consensus        86 ~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a  153 (199)
                      . +|.||+++|. ++|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|++.|.++|+.|+++++
T Consensus        78 ~-~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~  145 (145)
T smart00212       78 S-SGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA  145 (145)
T ss_pred             C-CCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            5 9999999997 89999999999999999999999999999999999999999999999999999874

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0421|consensus

Probab=100.00  E-value=1.3e-40  Score=247.27  Aligned_cols=144  Identities=35%  Similarity=0.650  Sum_probs=136.9

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP   82 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   82 (199)
                      ....|||++|+-.|+..   ...||+..|..||++.|.++|.||.+|+|+|-.|++.+.||.+||+.||.|+|+|+.|||
T Consensus        28 ~~V~KRLq~ELm~Lmms---~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HP  104 (175)
T KOG0421|consen   28 HSVTKRLQSELMGLMMS---NTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHP  104 (175)
T ss_pred             chHHHHHHHHHHHHHhc---CCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCC
Confidence            34689999999999886   568999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487         83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNV  151 (199)
Q Consensus        83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~  151 (199)
                      ||| ..|.||+|+|++.|+..|+++.||++||+||-+||.++|+|..||+++. |.++|.+.+.+..++
T Consensus       105 NVD-~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~  171 (175)
T KOG0421|consen  105 NVD-LSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE  171 (175)
T ss_pred             Ccc-ccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence            999 5999999999999999999999999999999999999999999999999 999999999876654

>KOG0422|consensus

Probab=100.00  E-value=1.1e-38  Score=235.99  Aligned_cols=148  Identities=34%  Similarity=0.676  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487          5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI   84 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   84 (199)
                      |.+||++|+.+|+++......+  +...+.|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+||||||
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn--~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNV   79 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRN--IEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNV   79 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhh--hhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCC
Confidence            6899999999999864322222  3445679999999998 899999999999999999999999999999999999999


Q ss_pred             cCCCCeeeccCc-hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487         85 SSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP  156 (199)
Q Consensus        85 ~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~  156 (199)
                      |. .|.+|+.++ .++|.|+...++||+.+..++.+|+++.|++.|+|..|..|+..|.++|.+|+++|+..+
T Consensus        80 De-~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~r  151 (153)
T KOG0422|consen   80 DE-KGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKR  151 (153)
T ss_pred             CC-CCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcC
Confidence            95 899999999 899999999999999999999999999999999999999999999999999999998765

>KOG0416|consensus

Probab=100.00  E-value=8.7e-38  Score=238.28  Aligned_cols=150  Identities=29%  Similarity=0.684  Sum_probs=140.7

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      |++ ..|||..|...|..+      ++.|...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|+++||
T Consensus         1 ms~-~~rRid~Dv~KL~~s------~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIf   73 (189)
T KOG0416|consen    1 MSS-GKRRIDTDVMKLLMS------DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIF   73 (189)
T ss_pred             CCC-cccchhhHHHHHHhc------CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeecc
Confidence            443 579999999999763      6788889999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHH-HHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCC
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLL-SLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPS  157 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~-~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~  157 (199)
                      ||||+..+|.|||+.+...|+|.+++..|+. .|-.||..||+.+|+|.+||.+|.++++.|.+++|++.++||.+..
T Consensus        74 HPNIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~  151 (189)
T KOG0416|consen   74 HPNIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEA  151 (189)
T ss_pred             CCCchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhh
Confidence            9999999999999999999999999999996 5678999999999999999999999999999999999999998864

>KOG0420|consensus

Probab=100.00  E-value=2.6e-36  Score=230.67  Aligned_cols=149  Identities=34%  Similarity=0.638  Sum_probs=132.0

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcc--eeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYT--ELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      +.|+-||++|..++..   ++.+.+.+....+++.  ..+++|. |+.+.|.||.|.|.+.+|+.||+.||+|.|+|+||
T Consensus        27 s~a~lrl~~di~elnL---p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~  102 (184)
T KOG0420|consen   27 SAALLRLKKDILELNL---PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY  102 (184)
T ss_pred             cHHHHHHHhhhhhccC---CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence            5678899999999854   2445555555444444  5999998 99999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP  156 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~  156 (199)
                      ||||| .+|.|||++|+++|+|+.+|.+|+.+++.||.+|+++||+|.+||..+++|++.|...||.....++.+.
T Consensus       103 HPNId-~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~~  177 (184)
T KOG0420|consen  103 HPNID-LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVGQ  177 (184)
T ss_pred             cCCcC-CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccCc
Confidence            99999 5999999999999999999999999999999999999999999999999999999999997766655443

>KOG0423|consensus

Probab=100.00  E-value=1.3e-35  Score=226.85  Aligned_cols=150  Identities=30%  Similarity=0.633  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      ..++.|.+|++.|...   +|.||.|.+.++|+....+.|.||.||||++|.|++.+.+..+||.+||+-.|+|+|||||
T Consensus        10 ~vik~~~kEl~~l~~~---PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPN   86 (223)
T KOG0423|consen   10 NVIKQLAKELKSLDES---PPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPN   86 (223)
T ss_pred             HHHHHHHHHHHhcccC---CCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCC
Confidence            3578889999998654   8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCC
Q psy17487         84 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPS  157 (199)
Q Consensus        84 V~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~  157 (199)
                      |- .+|.||++.|+.+|+|+.+|.+||..|++||..|+|++.+|.+|.+++.+++++|.++||.++..++++..
T Consensus        87 Va-aNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p~~  159 (223)
T KOG0423|consen   87 VA-ANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKPKP  159 (223)
T ss_pred             cc-cCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCC
Confidence            98 69999999999999999999999999999999999999999999999999999999999999999998843

>KOG0427|consensus

Probab=99.96  E-value=4.8e-30  Score=188.14  Aligned_cols=116  Identities=34%  Similarity=0.684  Sum_probs=108.5

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc-
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI-   79 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-   79 (199)
                      |+..|.+||+||+.+++.+   +|.|+... ..||+.+|.+.+.|.+||.|+|.+|.+++.||+.||++.|.|.|+.++ 
T Consensus        12 ls~~at~RLqKEl~e~q~~---pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P   87 (161)
T KOG0427|consen   12 LSKIATNRLQKELSEWQNN---PPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAP   87 (161)
T ss_pred             HHHHHHHHHHHHHHHHhcC---CCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCC
Confidence            4578999999999999887   78899887 567899999999999999999999999999999999999999999987 


Q ss_pred             ccCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCC
Q psy17487         80 WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE  121 (199)
Q Consensus        80 ~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~  121 (199)
                      .||||+. +|.||+++|.+.|+|++++.+|+++|.++|.+-.
T Consensus        88 ~HPHiYS-NGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~  128 (161)
T KOG0427|consen   88 LHPHIYS-NGHICLDILYDSWSPAMSVQSVCLSILSMLSSSK  128 (161)
T ss_pred             CCCceec-CCeEEEEeecccCCcchhhHHHHHHHHHHHccCc
Confidence            8999995 9999999999999999999999999999999843

>KOG0894|consensus

Probab=99.94  E-value=1.3e-26  Score=183.32  Aligned_cols=114  Identities=29%  Similarity=0.556  Sum_probs=103.1

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      ++.|.|||+|||+.|+++   +.+.|...|..+|+++||.+|.||++|||+||.|+.+|.||++||++||.|+++||   
T Consensus         3 ~k~a~kRl~keY~~l~k~---Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP---   76 (244)
T KOG0894|consen    3 SKAAVKRLQKEYRALCKD---PVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP---   76 (244)
T ss_pred             chHHHHHHHHHHHHHHhC---CchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC---
Confidence            367899999999999997   77889999999999999999999999999999999999999999999999999995   


Q ss_pred             CCc-cCCCCeeeccCc---hhhhhhcccHHHHHHHHHHHHhcCCC
Q psy17487         82 PNI-SSVTGAICLDIL---KDQWAAAMTLRTVLLSLQALMAAAEP  122 (199)
Q Consensus        82 PnV-~~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~p~~  122 (199)
                       |- ...+-++||++.   ++.|+|++++.+||.++.++|.+..+
T Consensus        77 -NGRFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p  120 (244)
T KOG0894|consen   77 -NGRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP  120 (244)
T ss_pred             -CCceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence             31 123568999887   89999999999999999999998554

>KOG0429|consensus

Probab=99.91  E-value=1.1e-23  Score=167.24  Aligned_cols=141  Identities=21%  Similarity=0.286  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCC--CCCccccccccccCCc
Q psy17487          7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPF--NPPKVKFLTKIWHPNI   84 (199)
Q Consensus         7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnV   84 (199)
                      .-|..||..+.+.   ...||+|.|+-.|-+.|.++|+ ...+.|+||+|+|+|.+|++||.  .-|+|.|.+.+|||+|
T Consensus        22 y~llAEf~lV~~e---kL~gIyviPSyan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~i   97 (258)
T KOG0429|consen   22 YALLAEFVLVCRE---KLDGIYVIPSYANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLI   97 (258)
T ss_pred             HHHHHHHHHHHhc---cCCceEEcccccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeecccccccc
Confidence            4578888888875   5789999999999999999999 56778999999999999999995  4999999999999999


Q ss_pred             cCCCCeeeccCchhhhhh-cccHHHHHHHHHHHHhcCCCCCc--hhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487         85 SSVTGAICLDILKDQWAA-AMTLRTVLLSLQALMAAAEPDDP--QDAVVAKQYKENPEMFTLTARHWTNV  151 (199)
Q Consensus        85 ~~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~p~~~~p--~n~eaa~~~~~d~~~f~~~ak~~~~~  151 (199)
                      .+.++.+|++.....|.- ..+|.+||..+|.+|.+|+.+.+  .|++|+.+|.+++++|.++|+++++.
T Consensus        98 cp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~  167 (258)
T KOG0429|consen   98 CPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA  167 (258)
T ss_pred             CCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence            999999999998777997 56899999999999999998765  49999999999999999999999873

>KOG0428|consensus

Probab=99.83  E-value=7.1e-21  Score=153.42  Aligned_cols=109  Identities=35%  Similarity=0.604  Sum_probs=96.7

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP   82 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   82 (199)
                      +.+.|||.+|.++|++    +...+...+-+||+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+-.+|+    
T Consensus        10 npaVkRlmkEa~El~~----Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp----   81 (314)
T KOG0428|consen   10 NPAVKRLMKEAAELKD----PTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP----   81 (314)
T ss_pred             CHHHHHHHHHHHHhcC----chhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC----
Confidence            5689999999999974    56677888999999999999999999999999999999999999999999999884    


Q ss_pred             Ccc-CCCCeeeccCc---hhhhhhcccHHHHHHHHHHHHhc
Q psy17487         83 NIS-SVTGAICLDIL---KDQWAAAMTLRTVLLSLQALMAA  119 (199)
Q Consensus        83 nV~-~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~  119 (199)
                      |-- ..+-+||+++.   ++.|.|+|+|+..|..|..+|-+
T Consensus        82 NGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt  122 (314)
T KOG0428|consen   82 NGRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT  122 (314)
T ss_pred             CCceeeCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence            321 23568999998   79999999999999999998865

>KOG0895|consensus

Probab=99.70  E-value=3.9e-17  Score=153.63  Aligned_cols=169  Identities=27%  Similarity=0.495  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccc--cccCCc
Q psy17487          7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTK--IWHPNI   84 (199)
Q Consensus         7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPnV   84 (199)
                      +..+.|++-|..+   .+.||.|+..++.|....+.|.|+.+|||++|.|.|.|.||.+||..||.|...+.  ++.||.
T Consensus       854 ~~~~~~~~~~~~~---~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl  930 (1101)
T KOG0895|consen  854 KKVQTEWKILPLS---LPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL  930 (1101)
T ss_pred             HHHHHHHHhhhcc---CCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence            4455566666554   67899999999999999999999999999999999999999999999999999865  589999


Q ss_pred             cCCCCeeeccCc-------hhhhhhcccHHHHHHHHHHHHhcCCC--CCc---------hhHHHHHHHhhCHHHHHHHHH
Q psy17487         85 SSVTGAICLDIL-------KDQWAAAMTLRTVLLSLQALMAAAEP--DDP---------QDAVVAKQYKENPEMFTLTAR  146 (199)
Q Consensus        85 ~~~~G~icl~~l-------~~~W~p~~~i~~il~~i~~ll~~p~~--~~p---------~n~eaa~~~~~d~~~f~~~ak  146 (199)
                      | ++|+||+++|       .+-|+|+-+|.+||.+||.|+....|  +.+         .-.+-.+.|  |-..|...++
T Consensus       931 y-~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~gy~~~~g~~~g~~~s~~y--~~~~~~~~~~ 1007 (1101)
T KOG0895|consen  931 Y-EDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEAGYEKQRGTAEGEKNSRVY--NENAFLLTCK 1007 (1101)
T ss_pred             c-cccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCcccccccccccccccccccc--cchhHHHHHH
Confidence            9 5999999999       35699999999999999999887544  211         111111222  3345677776


Q ss_pred             HHHHHhcCCCCCCcchHHHH-HHHHhcCCChHHHHHHHh
Q psy17487        147 HWTNVYAGGPSKNPDFDSKI-QRLTDMGVMSHDARVALS  184 (199)
Q Consensus       147 ~~~~~~a~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~  184 (199)
                      .++.+...++..   |++.+ +++--.|.+..+++-|..
T Consensus      1008 ~~~~~~~~p~~~---~~e~i~~Hf~~~~~ei~~~c~a~~ 1043 (1101)
T KOG0895|consen 1008 SMVYQLRKPPKC---FEEVIHKHFYLRGVEIMAACEAWI 1043 (1101)
T ss_pred             HHHHHhhCCcHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666665555433   44444 455556777777665543

>KOG0895|consensus

Probab=99.61  E-value=2.4e-15  Score=141.73  Aligned_cols=113  Identities=33%  Similarity=0.606  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccc---cc
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTK---IW   80 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~   80 (199)
                      .-.+|+++|++.+.+.   .+.|+.+.+.+..+...++.|.|+.+|||++|+|.|.|.||..||..||.|.+++.   .+
T Consensus       282 ~~skrv~ke~~llskd---lpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~  358 (1101)
T KOG0895|consen  282 NWSKKVAKELKLLSKD---LPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRL  358 (1101)
T ss_pred             hhHHHHHHHhhhhccc---CCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceee
Confidence            4579999999999886   67889999999999999999999999999999999999999999999999999977   58


Q ss_pred             cCCccCCCCeeeccCc----h---hhhhhc-ccHHHHHHHHHHHHhcC
Q psy17487         81 HPNISSVTGAICLDIL----K---DQWAAA-MTLRTVLLSLQALMAAA  120 (199)
Q Consensus        81 HPnV~~~~G~icl~~l----~---~~W~p~-~~i~~il~~i~~ll~~p  120 (199)
                      .||.|. +|+||+++|    .   +.|+|. .+|.++|..||.++...
T Consensus       359 nPNlYn-~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e  405 (1101)
T KOG0895|consen  359 NPNLYN-DGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE  405 (1101)
T ss_pred             cCCccc-CceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence            999995 999999999    2   679997 89999999999999876

>KOG0896|consensus

Probab=99.56  E-value=6.8e-15  Score=108.94  Aligned_cols=113  Identities=31%  Similarity=0.423  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCcc
Q psy17487          7 QRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNIS   85 (199)
Q Consensus         7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   85 (199)
                      -||.+|+..-++...+...++.+...+| .+..|.+.|.||+.|+|++.+|.++|...++||..||+|+|.+++--+.|+
T Consensus         8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn   87 (138)
T KOG0896|consen    8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN   87 (138)
T ss_pred             hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence            4788888777665433333333333333 567999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeccCc--hhhhhhcccHHHHHHHHHHHHhc
Q psy17487         86 SVTGAICLDIL--KDQWAAAMTLRTVLLSLQALMAA  119 (199)
Q Consensus        86 ~~~G~icl~~l--~~~W~p~~~i~~il~~i~~ll~~  119 (199)
                      +.+|.|.-..+  ..+|+-.++++.+|..+..+|..
T Consensus        88 ~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~  123 (138)
T KOG0896|consen   88 SSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS  123 (138)
T ss_pred             cCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence            88888766444  58999999999999999977665

>KOG0897|consensus

Probab=98.85  E-value=5e-09  Score=75.73  Aligned_cols=92  Identities=20%  Similarity=0.421  Sum_probs=68.3

Q ss_pred             EEEEEEeCCCCCCCCCccccccccccCCccCCCCeeeccCc-hhhhhhcccHHHHHHHHHHHHhcCCC--CCchhHHHHH
Q psy17487         56 FVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEP--DDPQDAVVAK  132 (199)
Q Consensus        56 f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~--~~p~n~eaa~  132 (199)
                      .-+.+.|+++||+.||++|...|+..-.....+|.||+.+| +.+|+.+++++.++++|...+.....  ..+++.+-. 
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk-   91 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK-   91 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence            45678899999999999998886654444346899999999 88999999999999999999988543  455544433 


Q ss_pred             HHh--hCHHHHHHHHHHH
Q psy17487        133 QYK--ENPEMFTLTARHW  148 (199)
Q Consensus       133 ~~~--~d~~~f~~~ak~~  148 (199)
                      +|.  ..-+.|...++..
T Consensus        92 ~~s~~qa~~sfksLv~~h  109 (122)
T KOG0897|consen   92 LYSHSQAQQSFKSLVQIH  109 (122)
T ss_pred             HhhHHHHHHHHHHHHHHH
Confidence            443  2334455555543

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.62  E-value=1.3e-07  Score=71.68  Aligned_cols=67  Identities=27%  Similarity=0.623  Sum_probs=61.1

Q ss_pred             CCcEEEEEEEeCCCCCCCCCcccccccc---ccCCccCCCCeeec---cCchhhhhhcccHHHHHHHHHHHHhc
Q psy17487         52 EGGNFVLEIKVPETYPFNPPKVKFLTKI---WHPNISSVTGAICL---DILKDQWAAAMTLRTVLLSLQALMAA  119 (199)
Q Consensus        52 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~  119 (199)
                      .|+.+.++|.||++||..||.|....+.   +-|||+. +|.+|+   ....+.|.|.-.+..+|..+..+|.+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~  106 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED  106 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999988654   6799996 999999   77789999999999999999999984

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=98.35  E-value=1.7e-06  Score=64.56  Aligned_cols=79  Identities=27%  Similarity=0.494  Sum_probs=54.3

Q ss_pred             CcceeeEEEeCCCCCCCCCcEE--EEEEEeCCCCCCCCCcccccccc-----ccCCccCCCCeeeccCchhhhhh-cccH
Q psy17487         35 NYTELKGEIAGPPDTPYEGGNF--VLEIKVPETYPFNPPKVKFLTKI-----WHPNISSVTGAICLDILKDQWAA-AMTL  106 (199)
Q Consensus        35 n~~~w~~~i~Gp~~tpy~gg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~~G~icl~~l~~~W~p-~~~i  106 (199)
                      .+....++|.    -.|.|..|  .+.|.+|.+||..||.|......     -+.+|| .+|+|.+..| ++|++ ..++
T Consensus        31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL-~~W~~~~s~L  104 (121)
T PF05743_consen   31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL-QNWNPPSSNL  104 (121)
T ss_dssp             EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH-HT--TTTS-H
T ss_pred             eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh-ccCCCCCCCH
Confidence            4455556554    24777777  57788999999999999775331     244999 4999999888 88998 8899


Q ss_pred             HHHHHHHHHHHhc
Q psy17487        107 RTVLLSLQALMAA  119 (199)
Q Consensus       107 ~~il~~i~~ll~~  119 (199)
                      .+++..+...|.+
T Consensus       105 ~~lv~~l~~~F~~  117 (121)
T PF05743_consen  105 VDLVQELQAVFSE  117 (121)
T ss_dssp             HHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHhH
Confidence            9999888887765

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=98.09  E-value=3.3e-06  Score=63.64  Aligned_cols=100  Identities=27%  Similarity=0.339  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhc----CCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCc--EEEEEEEeCCCCCCCCCccccccc
Q psy17487          5 AAQRIKREFKEVIKS----EEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG--NFVLEIKVPETYPFNPPKVKFLTK   78 (199)
Q Consensus         5 a~~RL~~E~~~l~~~----~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg--~f~~~i~fp~~YP~~pP~v~f~t~   78 (199)
                      =.+||..||..|.+.    .......+.++. +.+=+.|.+..--    .|.--  .|.+++.+|..||..||.+..-.-
T Consensus        25 W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL   99 (161)
T PF08694_consen   25 WVQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPEL   99 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence            368999999998552    111223444442 2233555444331    11222  455666779999999999986421


Q ss_pred             c-ccCCccCCCCeeeccCc-hhhhh---hcccHHHHH
Q psy17487         79 I-WHPNISSVTGAICLDIL-KDQWA---AAMTLRTVL  110 (199)
Q Consensus        79 i-~HPnV~~~~G~icl~~l-~~~W~---p~~~i~~il  110 (199)
                      - -..-.+ -+|+||++.. ..-|.   |.++|.+.|
T Consensus       100 dGKTaKMY-RGGkIClt~HFkPLWakN~PkfGIaHal  135 (161)
T PF08694_consen  100 DGKTAKMY-RGGKICLTDHFKPLWAKNVPKFGIAHAL  135 (161)
T ss_dssp             TTT-SSBC-CCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred             CCchhhhh-cCceEeeecccchhhhhcCCchhHHHHH
Confidence            0 011223 3899999988 66786   677887765

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>smart00165 UBA Ubiquitin associated domain

Probab=98.01  E-value=1.3e-05  Score=46.92  Aligned_cols=36  Identities=36%  Similarity=0.496  Sum_probs=33.9

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      ++++.++.+|||+.+.|+.||..++|+++.|.+.||
T Consensus         2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        2 EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            578999999999999999999999999999999875

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>cd00194 UBA Ubiquitin Associated domain

Probab=97.96  E-value=2e-05  Score=46.41  Aligned_cols=37  Identities=35%  Similarity=0.529  Sum_probs=34.7

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ++.++++.+|||+.+.|+.||..++|+++.|.+.|++
T Consensus         2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~   38 (38)
T cd00194           2 EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE   38 (38)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            5689999999999999999999999999999999874

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=97.91  E-value=2.6e-05  Score=45.84  Aligned_cols=35  Identities=37%  Similarity=0.542  Sum_probs=31.9

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhh
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAI  197 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~  197 (199)
                      +..+++|++|||+.+.|+.||..++|+++.|++.|
T Consensus         3 ~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    3 EEKVQQLMEMGFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            57899999999999999999999999999999875

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>KOG2391|consensus

Probab=97.66  E-value=0.00029  Score=60.38  Aligned_cols=81  Identities=25%  Similarity=0.472  Sum_probs=63.3

Q ss_pred             CcceeeEEEeCCCCCCCCCcEEE--EEEEeCCCCCCCCCccccccc-----cccCCccCCCCeeeccCchhhhhh-cccH
Q psy17487         35 NYTELKGEIAGPPDTPYEGGNFV--LEIKVPETYPFNPPKVKFLTK-----IWHPNISSVTGAICLDILKDQWAA-AMTL  106 (199)
Q Consensus        35 n~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~HPnV~~~~G~icl~~l~~~W~p-~~~i  106 (199)
                      +++...++|.    .+|.|..|.  +.|.+.+.||..||.+.....     --|-|||. +|.|-|..| .+|.+ +.++
T Consensus        51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~LPYL-h~W~~pssdL  124 (365)
T KOG2391|consen   51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYLPYL-HNWDPPSSDL  124 (365)
T ss_pred             chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEechhh-ccCCCccchH
Confidence            4455555554    568887775  677789999999999876522     13899995 999999999 78985 8899


Q ss_pred             HHHHHHHHHHHhcCC
Q psy17487        107 RTVLLSLQALMAAAE  121 (199)
Q Consensus       107 ~~il~~i~~ll~~p~  121 (199)
                      ..++..+.+.|.++.
T Consensus       125 v~Liq~l~a~f~~~p  139 (365)
T KOG2391|consen  125 VGLIQELIAAFSEDP  139 (365)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            999999999988754

>KOG3357|consensus

Probab=97.14  E-value=0.0012  Score=49.18  Aligned_cols=95  Identities=23%  Similarity=0.377  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCc----------EEEEEEEeCCCCCCCCCcccc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG----------NFVLEIKVPETYPFNPPKVKF   75 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f   75 (199)
                      .+||..||+.|...         ++...++-..|.-.-..+.||-|-|.          .|.+++.+|-.||...|.+..
T Consensus        29 vqrlkeey~sli~y---------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial   99 (167)
T KOG3357|consen   29 VQRLKEEYQSLIAY---------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL   99 (167)
T ss_pred             HHHHHHHHHHHHHH---------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence            58999999999652         11122223344433345677777664          455666779999999999875


Q ss_pred             cccc-ccCCccCCCCeeeccCc-hhhhh---hcccHHHHH
Q psy17487         76 LTKI-WHPNISSVTGAICLDIL-KDQWA---AAMTLRTVL  110 (199)
Q Consensus        76 ~t~i-~HPnV~~~~G~icl~~l-~~~W~---p~~~i~~il  110 (199)
                      ..-- -.--.+ .+|+||+.-. +.-|.   |..+|.+.+
T Consensus       100 peldgktakmy-rggkiclt~hfkplwarn~pkfgiaha~  138 (167)
T KOG3357|consen  100 PELDGKTAKMY-RGGKICLTDHFKPLWARNVPKFGIAHAM  138 (167)
T ss_pred             cccCchhhhhh-cCceEeeccccchhhhhcCcchhHHHHH
Confidence            3100 001122 4899999765 66786   455666553

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=96.33  E-value=0.0052  Score=54.31  Aligned_cols=42  Identities=21%  Similarity=0.304  Sum_probs=39.8

Q ss_pred             CCcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        158 KNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ...+++..|+++.+|||+++.|+.||+..-.+-++|+|+|++
T Consensus       152 ~g~~~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~t  193 (378)
T TIGR00601       152 VGSERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLT  193 (378)
T ss_pred             cchHHHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHh
Confidence            466899999999999999999999999999999999999985

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=95.96  E-value=0.018  Score=41.25  Aligned_cols=70  Identities=14%  Similarity=0.223  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeC--CCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAG--PPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI   79 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   79 (199)
                      ..+...|+..|..-   .+... ......+...+.+.+.+  ...+.-....+.+.+.||++||..||.|.+.++.
T Consensus         3 ~e~~~~EieaL~sI---y~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen    3 EEQQEEEIEALQSI---YPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             HHHHHHHHHHHHHH---SSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             HHHHHHHHHHHHHH---cCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            35677888888662   22222 12222344456666632  2334444568999999999999999999877653

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=95.89  E-value=0.064  Score=39.94  Aligned_cols=89  Identities=19%  Similarity=0.347  Sum_probs=61.9

Q ss_pred             cceEEEecCCCcceeeEEEeC--CCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCccCC-CCee--eccCc---
Q psy17487         25 CAIKLELIDDNYTELKGEIAG--PPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSV-TGAI--CLDIL---   96 (199)
Q Consensus        25 ~~i~v~~~~dn~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~-~G~i--cl~~l---   96 (199)
                      .|+.++...+.-..|.+ |.|  .+.+.|....-.+-|.+|..||..+|.+.+..|-.    ... +|.|  |-+..   
T Consensus        12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L----~~~~G~~iP~~~~~~~~~   86 (122)
T PF14462_consen   12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPL----KLADGGPIPNAAEVTQTF   86 (122)
T ss_pred             cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCce----EccCCCcCCchhcchhhc
Confidence            47777777766567765 666  56777999999999999999999999887765432    212 2334  33322   


Q ss_pred             -----------hhhhhhcc-cHHHHHHHHHHHHh
Q psy17487         97 -----------KDQWAAAM-TLRTVLLSLQALMA  118 (199)
Q Consensus        97 -----------~~~W~p~~-~i~~il~~i~~ll~  118 (199)
                                 ...|.|.. +|.+.|..|...|.
T Consensus        87 ~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen   87 DGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA  120 (122)
T ss_pred             CCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence                       24577744 68888888877664

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=95.58  E-value=0.029  Score=43.85  Aligned_cols=62  Identities=21%  Similarity=0.305  Sum_probs=48.6

Q ss_pred             EEEEEeCCCCCCCCCccccccccc---cCCccCCC-----CeeeccCc-hhhhhhcccHHHHHHHHHHHHhc
Q psy17487         57 VLEIKVPETYPFNPPKVKFLTKIW---HPNISSVT-----GAICLDIL-KDQWAAAMTLRTVLLSLQALMAA  119 (199)
Q Consensus        57 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnV~~~~-----G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~  119 (199)
                      .+.|.|+.+||..+|.|.+.-+.|   +||++. +     ..+|+--- -..|.+..++..+|..|..-|..
T Consensus        56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen   56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD  126 (162)
T ss_pred             eEEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence            366899999999999887765543   588874 4     68999766 56788999998888888777664

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=94.78  E-value=0.15  Score=36.02  Aligned_cols=26  Identities=31%  Similarity=0.662  Sum_probs=22.2

Q ss_pred             CCcEEEEEEEeCCCCCCCCCcccccc
Q psy17487         52 EGGNFVLEIKVPETYPFNPPKVKFLT   77 (199)
Q Consensus        52 ~gg~f~~~i~fp~~YP~~pP~v~f~t   77 (199)
                      ....+.+.+.||++||..+|.|.+.+
T Consensus        39 ~~~~~~l~~~~p~~YP~~~P~i~~~~   64 (107)
T smart00591       39 QYVSLTLQVKLPENYPDEAPPISLLN   64 (107)
T ss_pred             cceEEEEEEECCCCCCCCCCCeEEEC
Confidence            34568999999999999999998765

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=94.55  E-value=0.1  Score=31.41  Aligned_cols=35  Identities=34%  Similarity=0.514  Sum_probs=26.3

Q ss_pred             HHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        164 SKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       164 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      .+|.++.+. |.+...|+..|...+|+++.|+..-+
T Consensus         2 e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~   37 (43)
T PF14555_consen    2 EKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYF   37 (43)
T ss_dssp             HHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            355555555 88999999999999999999997543

>KOG0011|consensus

Probab=93.50  E-value=0.11  Score=44.75  Aligned_cols=41  Identities=22%  Similarity=0.375  Sum_probs=38.4

Q ss_pred             CcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +.+++..|.++.+||++++.++.||+..-|.-++|+|+|++
T Consensus       132 G~~~e~~V~~Im~MGy~re~V~~AlRAafNNPeRAVEYLl~  172 (340)
T KOG0011|consen  132 GSEYEQTVQQIMEMGYDREEVERALRAAFNNPERAVEYLLN  172 (340)
T ss_pred             cchhHHHHHHHHHhCccHHHHHHHHHHhhCChhhhHHHHhc
Confidence            45689999999999999999999999999999999999985

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=92.32  E-value=0.4  Score=28.55  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=31.1

Q ss_pred             HHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        163 DSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       163 ~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      +..++.+.++  +++......+|...+++++.|++.||
T Consensus         2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL   39 (42)
T PF02845_consen    2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALL   39 (42)
T ss_dssp             HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4567888888  88999999999999999999999987

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=89.38  E-value=1.1  Score=39.75  Aligned_cols=75  Identities=19%  Similarity=0.195  Sum_probs=57.9

Q ss_pred             chhHHHHHHHhhCHHHHHHHHHHHHHH-------------hc--CC-C---CC-CcchHHHHHHHHhcCCChHHHHHHHh
Q psy17487        125 PQDAVVAKQYKENPEMFTLTARHWTNV-------------YA--GG-P---SK-NPDFDSKIQRLTDMGVMSHDARVALS  184 (199)
Q Consensus       125 p~n~eaa~~~~~d~~~f~~~ak~~~~~-------------~a--~~-~---~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  184 (199)
                      -.|++.+++.++|.+.|.++.-+-...             .+  +. .   +. .++....|++|.+.||+++.|+.|+-
T Consensus       280 ~~nP~l~q~I~~n~e~Fl~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lT~eE~~AIeRL~~LGF~r~~viqaY~  359 (378)
T TIGR00601       280 QENPQLLQQISQHPEQFLQMLNEPVGELAGESDMEGGVGAIAEAGLPQMNQIQVTPEEKEAIERLCALGFDRGLVIQAYF  359 (378)
T ss_pred             hhCHHHHHHHHHCHHHHHHHhcCcccccccccccccccccccccCcccccccccCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            368899999999999999987654311             00  00 0   11 45678899999999999999999999


Q ss_pred             hcCCchHHHHHhhhC
Q psy17487        185 TYNWELERATEAIFT  199 (199)
Q Consensus       185 ~~~~~~~~~~e~~~~  199 (199)
                      .|.=+-+-|.-.||.
T Consensus       360 ACdKNEelAAn~Lf~  374 (378)
T TIGR00601       360 ACDKNEELAANYLLS  374 (378)
T ss_pred             hcCCcHHHHHHHHHh
Confidence            999998888887773

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=89.02  E-value=2.2  Score=36.55  Aligned_cols=87  Identities=22%  Similarity=0.451  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCcc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNIS   85 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   85 (199)
                      ..+|.+|+.++..+     ..+.+. .++++...++.+..      +.....++|.+|.+||..+|.+...-++      
T Consensus       101 ys~ll~EIe~IGW~-----kl~~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~------  162 (291)
T PF09765_consen  101 YSNLLKEIEAIGWD-----KLVQIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI------  162 (291)
T ss_dssp             C-CHHHHHHHHHCG-----CCEEEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS------
T ss_pred             HHHHHHHHHHhccc-----cceEEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc------
Confidence            46788888888653     223322 36688899988872      2357789999999999999975433221      


Q ss_pred             CCCCeeeccCchhhhhh-cccHHHHHHHHHHHHhc
Q psy17487         86 SVTGAICLDILKDQWAA-AMTLRTVLLSLQALMAA  119 (199)
Q Consensus        86 ~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~  119 (199)
                               .+...|.+ ..++.+++...+..+..
T Consensus       163 ---------~~~~~w~~~~ssL~~v~~qF~~~le~  188 (291)
T PF09765_consen  163 ---------PFSLSWSPSQSSLKDVVQQFQEALES  188 (291)
T ss_dssp             ----------HHHHHHCHT-SHHHHHHHHHHHHHH
T ss_pred             ---------chhhhhcccccCHHHHHHHHHHHHHH
Confidence                     12356888 77898888877777664

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=88.88  E-value=0.58  Score=29.84  Aligned_cols=28  Identities=11%  Similarity=0.190  Sum_probs=21.2

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcCCch
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYNWEL  190 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~  190 (199)
                      ...|+++++|||+.+.++.+|++.|.+-
T Consensus        10 ~~lVd~F~~mGF~~dkVvevlrrlgik~   37 (55)
T PF09288_consen   10 KDLVDQFENMGFERDKVVEVLRRLGIKS   37 (55)
T ss_dssp             HHHHHHHHHHT--HHHHHHHHHHS--SS
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence            4678999999999999999999988743

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>KOG0309|consensus

Probab=86.50  E-value=2.3  Score=40.78  Aligned_cols=68  Identities=22%  Similarity=0.304  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEE-EEEEEeCCCCCCC-CCccccccc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNF-VLEIKVPETYPFN-PPKVKFLTK   78 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f-~~~i~fp~~YP~~-pP~v~f~t~   78 (199)
                      .+-|..|+..+-.    ....+.++-.+-.-..-.+.+.||-... .|-+| ++.|.||.+||.. +|.++|..+
T Consensus       422 pQnLgeE~S~Ig~----k~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~  491 (1081)
T KOG0309|consen  422 PQNLGEEFSLIGV----KIRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP  491 (1081)
T ss_pred             hhhHHhHHhHhhc----cccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence            3557777777754    2345555544433456677777655443 44444 8899999999997 889988743

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=85.23  E-value=2.9  Score=24.77  Aligned_cols=37  Identities=19%  Similarity=0.312  Sum_probs=31.0

Q ss_pred             HHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        163 DSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       163 ~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ...+..+.++  .++...++..|...+++++.|++.||.
T Consensus         3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~   41 (43)
T smart00546        3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE   41 (43)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            4566777777  788888889999999999999998873

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>KOG4018|consensus

Probab=83.76  E-value=3.8  Score=33.35  Aligned_cols=65  Identities=15%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCC--CCCCcEEEEEEEeCCCCCCCCCccccc
Q psy17487          7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDT--PYEGGNFVLEIKVPETYPFNPPKVKFL   76 (199)
Q Consensus         7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~t--py~gg~f~~~i~fp~~YP~~pP~v~f~   76 (199)
                      .-...|+..|..-   .+..+. .....+...+.+.|.-..+.  -|.+ .+.+.+.++++||..+|.+.+.
T Consensus         5 EeQe~E~EaLeSI---Y~de~~-~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~   71 (215)
T KOG4018|consen    5 EEQEEELEALESI---YPDEFK-HINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF   71 (215)
T ss_pred             HHHHHHHHHHHHh---ccchhh-hhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence            3445666666441   222221 11222333466666632222  1222 7899999999999999999443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		2e-78
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		3e-78
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		4e-78
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		2e-77
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		1e-68
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		2e-49
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		1e-40
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		1e-40
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		2e-39
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		1e-33
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		1e-33
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		3e-32
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		4e-32
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		4e-32
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		4e-32
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		4e-32
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		6e-32
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		1e-31
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		1e-31
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		4e-31
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		5e-31
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		1e-30
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		1e-30
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		2e-30
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-30
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-30
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		2e-30
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		3e-30
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		3e-30
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		4e-30
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		4e-30
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		4e-30
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		4e-30
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		1e-29
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		1e-29
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-29
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-29
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		2e-29
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		2e-29
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		4e-29
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-29
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		6e-29
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		1e-28
3jvz_A	146	E2~ubiquitin-Hect Length = 146		2e-28
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		2e-28
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		2e-28
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		4e-28
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		2e-27
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		3e-27
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		6e-27
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		2e-26
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		5e-26
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		9e-22
1jas_A	152	Hsubc2b Length = 152		2e-21
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		3e-21
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		4e-21
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		7e-20
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		1e-19
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		3e-19
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		5e-18
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		6e-18
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		7e-18
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		1e-17
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		3e-17
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		4e-17
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		1e-16
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		1e-15
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		2e-15
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		4e-15
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		5e-15
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		5e-15
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		8e-15
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		9e-15
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		2e-14
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		3e-14
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		3e-14
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		6e-14
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		1e-13
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		1e-13
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		1e-13
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		1e-13
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		1e-13
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		1e-13
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		2e-13
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		2e-13
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		5e-13
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		6e-13
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		7e-13
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		8e-13
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		8e-13
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		9e-13
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		1e-12
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		2e-12
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		2e-12
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		2e-12
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		3e-12
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		9e-12
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		2e-11
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		2e-11
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		6e-10
1jat_B	138	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		1e-09
2gmi_B	137	Mms2UBC13~UBIQUITIN Length = 137		1e-09
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		5e-09
3ceg_A	323	Crystal Structure Of The Ubc Domain Of Baculoviral		4e-08
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		5e-08
1j74_A	145	Crystal Structure Of Mms2 Length = 145		1e-07
4epo_A	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		1e-07
1zgu_A	139	Solution Structure Of The Human Mms2-Ubiquitin Comp		2e-07
3von_B	138	Crystalstructure Of The Ubiquitin Protease Length =		3e-07
2a4d_A	160	Structure Of The Human Ubiquitin-Conjugating Enzyme		3e-07
2c2v_C	142	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		3e-07
2hlw_A	170	Solution Structure Of The Human Ubiquitin-Conjugati		3e-07
1zuo_A	186	Structure Of Human Ubiquitin-Conjugating Enzyme (Ub		2e-06
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		2e-06
2qgx_A	169	Ubiquitin-Conjugating Enzyme E2q Length = 169		3e-06
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		9e-06
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		1e-05
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		1e-05
4ds2_A	167	Ubiquitin Conjugating Enzyme (Putative) From Trypan		5e-04

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score =  288 bits (736), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/199 (72%), Positives = 170/199 (85%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 18  MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 77
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 78  KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 137
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   
Sbjct: 138 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 197
Query: 181 VALSTYNWELERATEAIFT 199
           VALS+ +W++E ATE + +
Sbjct: 198 VALSSKSWDVETATELLLS 216

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score =  287 bits (734), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/199 (72%), Positives = 170/199 (85%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 3   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 62
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 63  KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 122
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   
Sbjct: 123 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 182
Query: 181 VALSTYNWELERATEAIFT 199
           VALS+ +W++E ATE + +
Sbjct: 183 VALSSKSWDVETATELLLS 201

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score =  286 bits (733), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 144/199 (72%), Positives = 170/199 (85%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 2   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 62  KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 121
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   
Sbjct: 122 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 181
Query: 181 VALSTYNWELERATEAIFT 199
           VALS+ +W++E ATE + +
Sbjct: 182 VALSSKSWDVETATELLLS 200

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/199 (71%), Positives = 169/199 (84%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 54  MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 113
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 114 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 173
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L   G   +   
Sbjct: 174 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVI 233
Query: 181 VALSTYNWELERATEAIFT 199
           VALS+ +W++E ATE + +
Sbjct: 234 VALSSKSWDVETATELLLS 252

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score =  255 bits (651), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/155 (82%), Positives = 143/155 (92%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 5   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 64
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 65  KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 124
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG 155
           EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG 
Sbjct: 125 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/181 (51%), Positives = 127/181 (70%), Gaps = 4/181 (2%)
Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
           R+++E K+ I++E V +  I   + D N+ E  G I GP  TPYEGG+F L I +P  YP
Sbjct: 27  RLQKELKD-IENENVQE--IDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYP 83
Query: 68  FNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQD 127
           +NPPK+KF+TKIWHPNISS TGAICLD+LK++W+ A+T+RT LLS+QAL++  +PDDPQD
Sbjct: 84  YNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQD 143
Query: 128 AVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYN 187
           A VAK YKEN  +F  TA  WT  +A GP + P  +  I+++T+MG     A+ AL   N
Sbjct: 144 AEVAKMYKENHALFVKTASVWTKTFATGPKEEPR-EVIIKKITEMGFSEDQAKNALIKAN 202
Query: 188 W 188
           W
Sbjct: 203 W 203

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 120/193 (62%), Gaps = 4/193 (2%)
Query: 6   AQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           + R KR  KE+   ++     I LE + + +   LKG   GPP TPYEGG FV++I+VP 
Sbjct: 1   SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YPF PPK++F TK++HPNISSVTGAICLDIL++ W+  +TL++ L+SLQAL+ + EP+D
Sbjct: 61  EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALS 184
           PQDA VA+ Y  + E F  TA  WT +YA   S     + +    +D+  + HD      
Sbjct: 121 PQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVE---ESDLYGIDHDLIDEFE 177
Query: 185 TYNWELERATEAI 197
           +  +E ++  E +
Sbjct: 178 SQGFEKDKIVEVL 190

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           R KR  KE+   ++     I LE + + +   LKG   GPP TPYEGG FV++I+VP  Y
Sbjct: 2   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61
Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           PF PPK++F TK++HPNISSVTGAICLDILK+ W+  +TL++ L+SLQAL+ + EP+DPQ
Sbjct: 62  PFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQ 121
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYAG 154
           DA VA+ Y  + E F  TA  WT +YA 
Sbjct: 122 DAEVAQHYLRDRESFNKTAALWTRLYAS 149

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 99/147 (67%)
Query: 7   QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           Q+++R       +       +  +++  +    +G IAGP  TPYEGG+F L+I +P  Y
Sbjct: 45  QQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDY 104
Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           P+NPPK+KF+TKIWHPNISS TGAICLDILK +W+ A+T+RT LLS+QA++A   P DPQ
Sbjct: 105 PYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQ 164
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
           DA VAK   EN  +F  TA+ WT  +A
Sbjct: 165 DAEVAKMMIENHPLFVQTAKLWTETFA 191

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Query: 7   QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           +RI +E + +         A+    + +NY      I GP  TPYEGG + LE+ +PE Y
Sbjct: 4   RRITKETQNLANEPPPGIMAVP---VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           P  PPKV+FLTKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QAL+++ EPDDP 
Sbjct: 61  PMEPPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPL 119
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYAGG 155
           D+ VA+ +K++       AR W  +YA  
Sbjct: 120 DSKVAEHFKQDKNDAEHVARQWNKIYANN 148

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Query: 7   QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           +RI +E + +         A+    + +NY      I GP  TPYEGG + LE+ +PE Y
Sbjct: 4   RRITKETQNLANEPPPGIMAVP---VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           P  PPKV+FLTKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QAL+++ EPDDP 
Sbjct: 61  PMEPPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPL 119
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYAGG 155
           D+ VA+ +K++       AR W  +YA  
Sbjct: 120 DSKVAEHFKQDKNDAEHVARQWNKIYANN 148

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 4/147 (2%)
Query: 7   QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           +RI +E + ++ +E V    IK E  + N       IAGP D+P+EGG F LE+ +PE Y
Sbjct: 8   RRIIKETQRLL-AEPVP--GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 64
Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           P   PKV+F+TKI+HPN+  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP 
Sbjct: 65  PMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
              VA+Q+K N      TAR WT +YA
Sbjct: 124 ANDVAEQWKTNEAQAIETARAWTRLYA 150

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 4/147 (2%)
Query: 7   QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           +RI +E + ++ +E V    IK E  + N       IAGP D+P+EGG F LE+ +PE Y
Sbjct: 9   RRIIKETQRLL-AEPVP--GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 65
Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           P   PKV+F+TKI+HPN+  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP 
Sbjct: 66  PMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 124
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
              VA+Q+K N      TAR WT +YA
Sbjct: 125 ANDVAEQWKTNEAQAIETARAWTRLYA 151

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 4/147 (2%)
Query: 7   QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           +RI +E + ++ +E V    IK E  + N       IAGP D+P+EGG F LE+ +PE Y
Sbjct: 11  RRIIKETQRLL-AEPVP--GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 67
Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           P   PKV+F+TKI+HPN+  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP 
Sbjct: 68  PMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 126
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
              VA+Q+K N      TAR WT +YA
Sbjct: 127 ANDVAEQWKTNEAQAIETARAWTRLYA 153

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 4/147 (2%)
Query: 7   QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           +RI +E + ++ +E V    IK E  + N       IAGP D+P+EGG F LE+ +PE Y
Sbjct: 6   RRIIKETQRLL-AEPVP--GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 62
Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           P   PKV+F+TKI+HPN+  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP 
Sbjct: 63  PMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
              VA+Q+K N      TAR WT +YA
Sbjct: 122 ANDVAEQWKTNEAQAIETARAWTRLYA 148

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 4/147 (2%)
Query: 7   QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           +RI +E + ++ +E V    IK E  + N       IAGP D+P+EGG F LE+ +PE Y
Sbjct: 4   RRIIKETQRLL-AEPVP--GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 60
Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           P   PKV+F+TKI+HPN+  + G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP 
Sbjct: 61  PMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 119
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
              VA+Q+K N      TAR WT +YA
Sbjct: 120 ANDVAEQWKTNEAQAIETARAWTRLYA 146

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
           A +A +RI++E +E+   ++   C      + D+       I GP D+PY+GG F L++ 
Sbjct: 2   AAMAMRRIQKELREI---QQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVH 58
Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
            P  YPF  P+V F+TK++HPNI+   G ICLDILKDQW+ A+TL  VLLS+ +L+    
Sbjct: 59  FPVDYPFKAPRVTFMTKVYHPNINK-NGVICLDILKDQWSPALTLSRVLLSISSLLTDPN 117
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P DP D  VA   + N + F  TAR WT +YA
Sbjct: 118 PSDPLDPEVANVLRANKKQFEDTAREWTRMYA 149

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 96/153 (62%), Gaps = 4/153 (2%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M ++A +RI++E ++ ++ +  A+C+     + D+    +  I GP D+PY+GG F L I
Sbjct: 3   MGSMALKRIQKELQD-LQRDPPAQCSAGP--VGDDLFHWQATIMGPSDSPYQGGVFFLTI 59
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             P  YPF PPKV F TKI+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+   
Sbjct: 60  HFPTDYPFKPPKVAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDP 118
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            PDDP    +A  YK + E +   AR WT  YA
Sbjct: 119 NPDDPLVPDIAHIYKSDKEKYNRLAREWTQKYA 151

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 90/150 (60%), Gaps = 4/150 (2%)
Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI RE  ++ K    +  A     + D+    +  I GP D+PY GG F L I  P
Sbjct: 1   MALKRINRELADLGKDPPSSSSAGP---VGDDLFHWQATIMGPADSPYAGGVFFLSIHFP 57
Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPKV F T+I+HPNI+S  G+ICLDIL+DQW+ A+T+  VLLS+ +L+    PD
Sbjct: 58  TDYPFKPPKVNFTTRIYHPNINS-NGSICLDILRDQWSPALTISKVLLSISSLLTDPNPD 116
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP    +A  YK +   + L+AR WT  YA
Sbjct: 117 DPLVPEIAHVYKTDRSRYELSAREWTRKYA 146

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 98/152 (64%), Gaps = 4/152 (2%)
Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
           +++A +RI++E +++ + +  A+C+     + D+    +  I GPP++PY+GG F L I 
Sbjct: 2   SHMALKRIQKELQDLGR-DPPAQCSAGP--VGDDLFHWQATIMGPPESPYQGGVFFLTIH 58
Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
            P  YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    
Sbjct: 59  FPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPN 117
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           PDDP    +A+ YK + E +   AR WT  YA
Sbjct: 118 PDDPLVPEIARIYKTDRERYNQLAREWTQKYA 149

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 95/153 (62%), Gaps = 4/153 (2%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M ++A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I
Sbjct: 3   MGSMALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTI 59
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             P  YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+   
Sbjct: 60  HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP 118
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            PDDP    +A+ YK + E +   AR WT  YA
Sbjct: 119 NPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 151

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 4/149 (2%)
Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           A +RI +E  ++ K +    C+     + D+    +  I GP D+PY GG F L I  P 
Sbjct: 22  ALKRINKELNDLSK-DPPTNCSAGP--VGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPS 78
Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YPF PPKV F TKI+HPNI+S  GAICLDILKDQW+ A+T+  VLLS+ +L+    PDD
Sbjct: 79  DYPFKPPKVNFTTKIYHPNINS-QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDD 137
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P    +A  YK +   +  TAR W+  YA
Sbjct: 138 PLVPEIAHLYKSDRMRYDQTAREWSQKYA 166

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 4/153 (2%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M  +A +RI++E  + ++ +  A C+     + D+    +  I GPPD+ Y+GG F L +
Sbjct: 4   MLEMALKRIQKELSD-LQRDPPAHCSAGP--VGDDLFHWQATIMGPPDSAYQGGVFFLTV 60
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             P  YPF PPK+ F TKI+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+   
Sbjct: 61  HFPTDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDP 119
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            PDDP    +A+ YK + E +   AR WT  YA
Sbjct: 120 NPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 152

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 95/153 (62%), Gaps = 4/153 (2%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M ++A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I
Sbjct: 8   MNSMALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             P  YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+   
Sbjct: 65  HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP 123
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            PDDP    +A+ Y+ + E +   AR WT  YA
Sbjct: 124 NPDDPLVPEIARIYQTDREKYNRIAREWTQKYA 156

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
            ++A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I 
Sbjct: 17  GSMALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIH 73
Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
            P  YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    
Sbjct: 74  FPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPN 132
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           PDDP    +A+ YK + E +   AR WT  YA
Sbjct: 133 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
            ++A +RI++E  + ++ +  A C+     + D+    +  I GPPD+ Y+GG F L + 
Sbjct: 17  GSMALKRIQKELSD-LQRDPPAHCSAGP--VGDDLFHWQATIMGPPDSAYQGGVFFLTVH 73
Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
            P  YPF PPK+ F TKI+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    
Sbjct: 74  FPTDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 132
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           PDDP    +A+ YK + E +   AR WT  YA
Sbjct: 133 PDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 164

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
            ++A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I 
Sbjct: 1   GSMALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIH 57
Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
            P  YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    
Sbjct: 58  FPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           PDDP    +A+ YK + E +   AR WT  YA
Sbjct: 117 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 95/153 (62%), Gaps = 4/153 (2%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M ++A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I
Sbjct: 8   MNSMALKRINKELSDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             P  YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+   
Sbjct: 65  HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP 123
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            PDDP    +A+ YK + + +   +R WT  YA
Sbjct: 124 NPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 156

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I  P
Sbjct: 1   MALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 57
Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PD
Sbjct: 58  TDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPD 116
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP    +A+ YK + E +   AR WT  YA
Sbjct: 117 DPLVPEIARIYKTDREKYNRIAREWTQKYA 146

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI++E  + ++ +  A C+     + D+    +  I GPPD+ Y+GG F L +  P
Sbjct: 3   MALKRIQKELSD-LQRDPPAHCSAGP--VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFP 59
Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPK+ F TKI+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PD
Sbjct: 60  TDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPD 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP    +A+ YK + E +   AR WT  YA
Sbjct: 119 DPLVPDIAQIYKSDKEKYNRHAREWTQKYA 148

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I  P
Sbjct: 3   MALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 59
Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PD
Sbjct: 60  TDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPD 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP    +A+ YK + E +   AR WT  YA
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAREWTQKYA 148

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           +++RI +E  ++   E     +     + D+    +  I GP D+PY GG F L I  P 
Sbjct: 3   SSKRIAKELSDL---ERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPT 59
Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YPF PPK+ F TKI+HPNI++  G ICLDILKDQW+ A+TL  VLLS+ +L+  A PDD
Sbjct: 60  DYPFKPPKISFTTKIYHPNINA-NGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDD 118
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P    +A  YK +   +  TAR WT  YA
Sbjct: 119 PLVPEIAHIYKTDRPKYEATAREWTKKYA 147

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I  P
Sbjct: 3   MALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 59
Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW  A+T+  VLLS+ +L+    PD
Sbjct: 60  TDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWGPALTISKVLLSICSLLCDPNPD 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP    +A+ YK + E +   AR WT  YA
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAREWTQKYA 148

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 4/154 (2%)
Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I  P
Sbjct: 3   MALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 59
Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPKV F T+I+HPNI+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    PD
Sbjct: 60  TDYPFKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPD 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPS 157
           DP    +A+ YK + E +   AR WT  YA G S
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAREWTQKYAMGGS 152

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I  P
Sbjct: 9   MALKRINKELSDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 65
Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PD
Sbjct: 66  TDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPD 124
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP    +A+ YK + + +   +R WT  YA
Sbjct: 125 DPLVPEIARIYKTDRDKYNRISREWTQKYA 154

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I  P
Sbjct: 3   MALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 59
Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPKV F T+I+HPNI+S  G+ICLD L+ QW+ A+T+  VLLS+ +L+    PD
Sbjct: 60  TDYPFKPPKVAFTTRIYHPNINS-NGSICLDALRSQWSPALTISKVLLSICSLLCDPNPD 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP    +A+ YK + E +   AR WT  YA
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAREWTQKYA 148

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI +E  ++ + +  A+C+     + D+    +    GP D+PY+GG F L I  P
Sbjct: 3   MALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATAMGPNDSPYQGGVFFLTIHFP 59
Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PD
Sbjct: 60  TDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPD 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP    +A+ YK + E +   AR WT  YA
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAREWTQKYA 148

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I  P 
Sbjct: 4   ALKRINKELSDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 60
Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDD
Sbjct: 61  DYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P    +A+ YK + + +   +R WT  YA
Sbjct: 120 PLVPEIARIYKTDRDKYNRISREWTQKYA 148

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I  P 
Sbjct: 1   ALKRINKELSDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 57
Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PDD
Sbjct: 58  DYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 116
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P    +A+ YK + + +   +R WT  YA
Sbjct: 117 PLVPEIARIYKTDRDKYNRISREWTQKYA 145

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
            ++A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I 
Sbjct: 2   GSMALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIH 58
Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
            P  YPF PPKV F T+I+HPNI+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    
Sbjct: 59  FPTDYPFKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPN 117
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           PDDP    +A+ YK + E +   AR WT  YA
Sbjct: 118 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 149

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
            ++A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I 
Sbjct: 17  GSMALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIH 73
Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
            P  YPF PPKV F T+I+HPNI+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    
Sbjct: 74  FPTDYPFKPPKVAFTTRIYHPNINS-NGSIXLDILRSQWSPALTISKVLLSICSLLCDPN 132
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           PDDP    +A+ YK + E +   AR WT  YA
Sbjct: 133 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
            ++A +RI++E  + ++ +  A C  +   + D+    +  I GPPD+ Y+GG F L + 
Sbjct: 5   GSMALKRIQKELSD-LQRDPPAHC--RAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVH 61
Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
            P  YPF PPK+ F TKI+HPNI+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    
Sbjct: 62  FPTDYPFKPPKIAFTTKIYHPNINS-NGSIKLDILRSQWSPALTVSKVLLSICSLLCDPN 120
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           PDDP    +A+ YK + E +   AR WT  YA
Sbjct: 121 PDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 152

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           AA   KR  KE  K        I  E  DDN    +  I GP  +PYE G F LE+ +P+
Sbjct: 3   AASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 62
Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YP   PKV+FLTKI+HPNI  + G ICLD+LK  W+ A+ +RTVLLS+QAL+A+  P+D
Sbjct: 63  DYPMEAPKVRFLTKIYHPNIDRL-GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPND 121
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P    VA+ + +N +     AR WT +YA
Sbjct: 122 PLANDVAEDWIKNEQGAKAKAREWTKLYA 150

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 4/149 (2%)
Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           A++RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I  P 
Sbjct: 1   ASKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 57
Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YPF PPKV F T+I+HPNI+S  G+I LDIL+ QW+ A+ +  VLLS+ +L+    PDD
Sbjct: 58  DYPFKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDD 116
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P    +A+ YK + E +   AR WT  YA
Sbjct: 117 PLVPEIARIYKTDREKYNRIAREWTQKYA 145

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI +E  ++ + +  A+C+     + D+    +  I GP D+PY+GG F L I  P
Sbjct: 1   MALKRINKELSDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 57
Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPKV F T+I+HPNI+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    PD
Sbjct: 58  TDYPFKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPD 116
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP    +A+ YK + + +   +R WT  YA
Sbjct: 117 DPLVPEIARIYKTDRDKYNRISREWTQKYA 146

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Query: 10  KREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFN 69
           KR  KE  K        I  E  DDN    +  I GP  +PYE G F LE+ +P+ YP  
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 70  PPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAV 129
            PKV+FLTKI+HPNI  + G ICLD+LK  W+ A+ +RTVLLS+QAL+A+  P+DP    
Sbjct: 66  APKVRFLTKIYHPNIDRL-GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 130 VAKQYKENPEMFTLTARHWTNVYA 153
           VA+ + +N +     AR WT +YA
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYA 148

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 91/150 (60%), Gaps = 4/150 (2%)
Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI +E  ++ + +  A+C  +   + D+    +  I GP D+PY+GG F L I  P
Sbjct: 1   MALKRIHKELNDLAR-DPPAQC--RAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 57
Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPKV F T+I+HP I+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    PD
Sbjct: 58  TDYPFKPPKVAFTTRIYHPAINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPD 116
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP    +A+ YK + E +   AR WT  YA
Sbjct: 117 DPLVPEIARIYKTDREKYNRIAREWTQKYA 146

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
            + +A+RI++E  E I  +    C+   +   DN  E +  I GPP + YEGG F L+I 
Sbjct: 1   GSTSAKRIQKELAE-ITLDPPPNCSAGPK--GDNIYEWRSTILGPPGSVYEGGVFFLDIT 57
Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
               YPF PPKV F T+I+H NI+S  G ICLDILKD W+ A+T+  VLLS+ +L+    
Sbjct: 58  FSPDYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCN 116
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P DP    +A QY  N       AR WT  YA
Sbjct: 117 PADPLVGSIATQYMTNRAEHDRMARQWTKRYA 148

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/144 (45%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
Query: 10  KREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFN 69
           KR  KE  K        I  E  DDN    +  I GP  +PYE G F LE+ +P+ YP  
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 70  PPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAV 129
            PKV+FLTKI+HPNI  + G I LD+LK  W+ A+ +RTVLLS+QAL+A+  P+DP    
Sbjct: 66  APKVRFLTKIYHPNIDRL-GRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 130 VAKQYKENPEMFTLTARHWTNVYA 153
           VA+ + +N +     AR WT +YA
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYA 148

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           + + +A+RI++E  + I  +    C+   +   DN  E +  I GPP + YEGG F L+I
Sbjct: 45  LLSTSAKRIQKELAD-ITLDPPPNCSAGPK--GDNIYEWRSTILGPPGSVYEGGVFFLDI 101
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
                YPF PPKV F T+I+H NI+S  G ICLDILKD W+ A+T+  VLLS+ +L+   
Sbjct: 102 TFTPEYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDC 160
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            P DP    +A QY  N       AR WT  YA
Sbjct: 161 NPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 193

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 85/144 (59%), Gaps = 1/144 (0%)
Query: 10  KREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFN 69
           KR  KE  K        I  E  DDN    +  I GP  +PYE G F LE+ +P+ YP  
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 70  PPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAV 129
            PKV+FLTKI+HP I  + G I LD+LK  W+ A+ +RTVLLS+QAL+A+  P+DP    
Sbjct: 66  APKVRFLTKIYHPAIDRL-GRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 130 VAKQYKENPEMFTLTARHWTNVYA 153
           VA+ + +N +     AR WT +YA
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYA 148

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score =  113 bits (283), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/124 (45%), Positives = 77/124 (62%), Gaps = 5/124 (4%)
Query: 34  DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICL 93
           D   +L+ +I G  +TPYE G F LE+ +PE YPF PP+++FLT I+HPNI S  G ICL
Sbjct: 31  DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSA-GRICL 89
Query: 94  DIL----KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
           D+L    K  W  ++ + TVL S+Q LM+   PDDP  A ++ ++K N   F   AR WT
Sbjct: 90  DVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWT 149
Query: 150 NVYA 153
             +A
Sbjct: 150 EKHA 153

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M+  A +R+ R+FK +   ++     I     D+N       I GP DTP++GG F L +
Sbjct: 1   MSTPARKRLMRDFKRL---QQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSL 57
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           +  E YP  PP V+F+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+L+   
Sbjct: 58  QFSEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 116
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTAR 146
            P+ P ++  A+ Y E+   +    R
Sbjct: 117 NPNSPANSEAARMYSESKREYNRRVR 142

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M+  A +R+ R+FK + +   V       E   +N  +    I GP  TP+E G F L I
Sbjct: 1   MSTPARRRLMRDFKRLQEDPPVGVSGAPSE---NNIMQWNAVIFGPEGTPFEDGTFKLVI 57
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           +  E YP  PP V+FL+K++HPN+ +  G+ICLDIL+++W+    + ++L S+Q+L+   
Sbjct: 58  EFSEEYPNKPPTVRFLSKMFHPNVYA-DGSICLDILQNRWSPTYDVSSILTSIQSLLDEP 116
Query: 121 EPDDPQDAVVAKQYKEN 137
            P+ P ++  A+ Y+EN
Sbjct: 117 NPNSPANSQAAQLYQEN 133

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M   + +R+ R+FK   K +E     +     +DN    +  I GP +TP+E G F L +
Sbjct: 4   MTTPSRRRLMRDFK---KLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSL 60
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           +  E YP  PP VKF++K++HPN+ +  G+ICLDIL+++W+    +  +L S+Q+L+   
Sbjct: 61  EFTEEYPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEP 119
Query: 121 EPDDPQDAVVAKQYKEN 137
            P+ P +++ A+ Y+EN
Sbjct: 120 NPNSPANSLAAQLYQEN 136

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M   + +R+ R+FK   K +E     +     +DN    +  I GP +TP+E G F L +
Sbjct: 1   MTTPSRRRLMRDFK---KLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSL 57
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           +  E YP  PP VKF++K++HPN+ +  G+ICLDIL+++W+    +  +L S+Q+L+   
Sbjct: 58  EFTEEYPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEP 116
Query: 121 EPDDPQDAVVAKQYKEN 137
            P+ P +++ A+ Y+EN
Sbjct: 117 NPNSPANSLAAQLYQEN 133

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M+  A +R+ R+FK +   +E A   +    + DN       I GP DTPYE G F L +
Sbjct: 1   MSTPARRRLMRDFKRM---KEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLL 57
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           +  E YP  PP VKFL++++HPN+ +  G ICLDIL+++W     + ++L S+Q+L    
Sbjct: 58  EFDEEYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDP 116
Query: 121 EPDDPQDAVVAKQYKEN 137
            P  P +   A  +K++
Sbjct: 117 NPASPANVEAATLFKDH 133

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 6   AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPET 65
           ++R+++E + ++ S +    A       DN  +    + GP DT YE   + L ++ P  
Sbjct: 11  SKRLQQELRTLLMSGDPGITAFP---DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67
Query: 66  YPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP 125
           YP+ PP VKF T  WHPN+   +G ICLDILK+ W A+  +RT+LLSLQ+L+       P
Sbjct: 68  YPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASP 126
Query: 126 QDAVVAKQYKENPE 139
            +A  A  +    E
Sbjct: 127 LNAQAADMWSNQTE 140

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 3   NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKV 62
           N+    I+  +KEV          IK+   +++ T+L+  I GP  TPY GG F +++ +
Sbjct: 9   NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 68
Query: 63  PETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 122
            + +P +PPK  FLTKI+HPN+ +  G IC+++LK  W A + +R VLL+++ L+    P
Sbjct: 69  GKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNP 127
Query: 123 DDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           +   +    +   EN E +   AR  T ++ 
Sbjct: 128 ESALNEEAGRLLLENYEEYAARARLLTEIHG 158

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 45  GPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAM 104
           GP  TPYEGG + + + +P+ YPF  P + F+ KI+HPNI   +G +CLD++   W A  
Sbjct: 59  GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 105 TLRTVLLS-LQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            L  +  S L  L+A   P DP +   A  Y   PE +    + +   YA
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 168

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 13/154 (8%)
Query: 5   AAQRIKREFKEVIKSEEVAKCAIK----LELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           A++R+ +E       EE+ KC +K    +++ + N    +G I  P + PY+ G F +EI
Sbjct: 5   ASRRLMKEL------EEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEI 57
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAA 119
             P  YPF PPK+ F TKI+HPNI    G +CL ++  + W  A     V+ SL AL+  
Sbjct: 58  NFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVND 116
Query: 120 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            +P+ P  A +A++Y ++ + F   A  +T  Y 
Sbjct: 117 PQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 150

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 13/154 (8%)
Query: 5   AAQRIKREFKEVIKSEEVAKCAIK----LELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           A++R+ +E       EE+ KC +K    +++ + N    +G I  P + PY+ G F +EI
Sbjct: 3   ASRRLMKEL------EEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEI 55
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAA 119
             P  YPF PPK+ F TKI+HPNI    G +CL ++  + W  A     V+ SL AL+  
Sbjct: 56  NFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVND 114
Query: 120 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            +P+ P  A +A++Y ++ + F   A  +T  Y 
Sbjct: 115 PQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 6   AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPET 65
            +R+++E   ++ S +    A       DN  +  G I G   T YE   + L ++ P  
Sbjct: 32  GKRLQQELMTLMMSGDKGISAFPE---SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSG 88
Query: 66  YPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP 125
           YP+N P VKFLT  +HPN+ +  G I LDILK++W+A   +RT+LLS+Q+L+     D P
Sbjct: 89  YPYNAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSP 147
Query: 126 QDAVVAKQYKENPEMF 141
            +   A+ +K NP  F
Sbjct: 148 LNTHAAELWK-NPTAF 162

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 15/121 (12%)
Query: 31  LIDDN-YTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTG 89
           LIDDN     +  I GPPDT YEGG F   +  P+ YP  PPK+KF+T+IWHPN+    G
Sbjct: 41  LIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK-NG 99
Query: 90  AICLDIL-------------KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE 136
            +C+ IL             +++W    T+ T+++S+ +++A    D P +   AK+++E
Sbjct: 100 DVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWRE 159
Query: 137 N 137
           +
Sbjct: 160 D 160

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
           R K   KEV + E    C  K+   D N          P +  Y+GG F  E +VP+ Y 
Sbjct: 15  RDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYN 74
Query: 68  FNPPKVKFLTKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVLLSLQALMA-AA 120
             PPKVK LTKIWHPNI+  TG ICL +L++       WA   TL+ V+  L +L     
Sbjct: 75  MVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL 133
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA-GGPS 157
             DDP +   A+ +  + E F      +   YA  GPS
Sbjct: 134 NFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYARSGPS 171

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 72/153 (47%), Gaps = 8/153 (5%)
Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
           R K   KEV + E    C  K+   D N          P +  Y+GG F  E +VP+ Y 
Sbjct: 15  RDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYN 74
Query: 68  FNPPKVKFLTKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVLLSLQALMA-AA 120
             PPKVK LTKIWHPNI+  TG ICL +L++       WA   TL+ V+  L +L     
Sbjct: 75  MVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL 133
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
             DDP +   A+ +  + E F      +   YA
Sbjct: 134 NFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 15/121 (12%)
Query: 31  LIDDN-YTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTG 89
           L+DDN   + +  + GPPDT YEGG F   +  P  YP  PPK+KF+++IWHPNI    G
Sbjct: 27  LVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK-EG 85
Query: 90  AICLDILKD-------------QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE 136
            +C+ IL D             +W    T+ T+LLS+ +++     + P +   AK  +E
Sbjct: 86  NVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRE 145
Query: 137 N 137
           N
Sbjct: 146 N 146

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 43  IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAA 102
           +  P +  Y+ G FV   KV + YP +PPKVK  T ++HPNI  + G +CL+IL++ W  
Sbjct: 40  VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNI-DLEGNVCLNILREDWKP 98
Query: 103 AMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMF 141
            +T+ +++  LQ L     P+DP +   A+  + N  +F
Sbjct: 99  VLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 137

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 1   MANIAAQRIKREFKEVIKS----EEVAK----CAIKLELIDD-NYTELKGEIAGPPDTPY 51
           MA+    RI +E+K ++K+    + +A         L  ID+ + ++ +  I+GP DTPY
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 52  EGGNFVLEIKVPETYPFNPPKVKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTV 109
           E   F + I+VP +YP NPPK+ F+   I H N+ S TG ICL+ILK ++W     L   
Sbjct: 63  ENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 110 LLSLQALMAAAEPDDPQDAVVAK 132
           + ++  L+     D P D  +  
Sbjct: 123 VHAVWRLLREPVSDSPLDVDIGN 145

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 17/111 (15%)
Query: 43  IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL------ 96
           I GPP+T YEGG F   +K P  YP++PP  +FLTK+WHPNI   TG +C+ IL      
Sbjct: 44  IFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDD 102
Query: 97  -------KDQWAAAMTLRTVLLSLQALMAAAEPDDPQD---AVVAKQYKEN 137
                   ++W     +RT+LLS+ +L+       P +   +V+ +++KE+
Sbjct: 103 PQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKES 153

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 17/111 (15%)
Query: 43  IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL------ 96
           I GPP+T YEGG F   +K P  YP++PP  +FLTK+WHPNI   TG +C+ IL      
Sbjct: 41  IFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDD 99
Query: 97  -------KDQWAAAMTLRTVLLSLQALMAAAEPDDPQD---AVVAKQYKEN 137
                   ++W     +RT+LLS+ +L+       P +   +V+ +++KE+
Sbjct: 100 PQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKES 150

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 1   MANIAAQRIKREFKEVIKS----EEVAK----CAIKLELIDD-NYTELKGEIAGPPDTPY 51
           MA+    RI +E+K ++K+    + +A         L  ID+ + ++ +  I+GP DTPY
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 52  EGGNFVLEIKVPETYPFNPPKVKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTV 109
           E   F + I+VP +YP NPPK+ F+   I H N+ S TG ICL+ILK ++W     L   
Sbjct: 63  ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 110 LLSLQALMAAAEPDDPQDAVVAK 132
           + ++  L+     D P D  +  
Sbjct: 123 VHAVWRLLREPVCDSPLDVDIGN 145

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 11/142 (7%)
Query: 1   MANIAAQRIKREFKEVIKS----EEVAK----CAIKLELIDD-NYTELKGEIAGPPDTPY 51
           MA+    RI +E+K ++K+    + +A         L  ID+ + ++ +  I+GP DTPY
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 52  EGGNFVLEIKVPETYPFNPPKVKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTV 109
           E   F + I+VP +YP NPPK+ F+   I H N+ S TG ICL+ILK ++W     L   
Sbjct: 63  ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 110 LLSLQALMAAAEPDDPQDAVVA 131
           + ++  L+     D P D  + 
Sbjct: 123 VHAVWRLLREPVCDSPLDVDIG 144

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 34  DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICL 93
           D   E   E  GP  TPYE G ++L +++P  YPF  P + F  +I HPN+   +G++CL
Sbjct: 35  DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 94
Query: 94  DILKDQWAAAMTLRTVL-LSLQALMAAAEPDDPQDAVVAK 132
           D++   W     L  +  + L  L+    P DP +   A 
Sbjct: 95  DVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAH 134

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 29  LELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVT 88
           LEL + +  +      GP  T YEGG + + + +P+ YPF  P + F+ K+ HPN+   +
Sbjct: 21  LELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEAS 80
Query: 89  GAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARH 147
           G++CLD++   W    +L  V  + L  L+    P DP ++  A    ++  ++    + 
Sbjct: 81  GSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKE 140
Query: 148 WTNVYA 153
           +  +YA
Sbjct: 141 YVKLYA 146

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 43  IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAA 102
           +  P +  Y+ G FV   KV + YP +PPKVK  T ++HPNI  + G + L+IL++ W  
Sbjct: 60  VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI-DLEGNVALNILREDWKP 118
Query: 103 AMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMF 141
            +T+ +++  LQ L     P+DP +   A+  + N  +F
Sbjct: 119 VLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 157

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
           M+ IA  R+ +E K   K       A+  +  D     +  E A  G   TP+EGG F L
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
            +   + YP +PPK KF   ++HPN++  +G +CL IL++   W  A+T++ +LL +Q L
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPLFHPNVAP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           +      DP  A     Y +N
Sbjct: 123 LNEPNIQDPAQAEAYTIYCQN 143

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
           M+ IA  R+ +E K   K       A+  +  D     +  E A  G   TP+EGG F L
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
            +   + YP +PPK KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           +      DP  A     Y +N
Sbjct: 123 LNEPNIQDPAQAEAYTIYCQN 143

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
           M+ IA  R+ +E K   K       A+  +  D     +  E A  G   TP+EGG F L
Sbjct: 3   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
            +   + YP +PPK KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L
Sbjct: 63  RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 121
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           +      DP  A     Y +N
Sbjct: 122 LNEPNIQDPAQAEAYTIYCQN 142

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
           M+ IA  R+ +E K   K       A+  +  D     +  E A  G   TP+EGG F L
Sbjct: 3   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
            +   + YP +PPK KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L
Sbjct: 63  RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 121
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           +      DP  A     Y +N
Sbjct: 122 LNEPNIQDPAQAEAYTIYCQN 142

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
           M+ IA  R+ +E K   K       A+  +  D     +  E A  G   TP+EGG F L
Sbjct: 2   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 61
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
            +   + YP +PPK KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L
Sbjct: 62  RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 120
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           +      DP  A     Y +N
Sbjct: 121 LNEPNIQDPAQAEAYTIYCQN 141

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
           M+ IA  R+ +E K   K       A+  +  D     +  E A  G   TP+EGG F L
Sbjct: 6   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 65
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
            +   + YP +PPK KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L
Sbjct: 66  RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 124
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           +      DP  A     Y +N
Sbjct: 125 LNEPNIQDPAQAEAYTIYCQN 145

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
           M+ IA  R+ +E K   K       A+  +  D     +  E A  G   TP+EGG F L
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
            +   + YP +PPK KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 119
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           +      DP  A     Y +N
Sbjct: 120 LNEPNIQDPAQAEAYTIYCQN 140

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGE--IAGPPDTPYEGGNFVL 58
           M+++  QR++ E K+  K       A  ++  D +    K E  I G   T + GG + +
Sbjct: 1   MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQ-WAAAMTLRTVLLSLQAL 116
            ++ P  YP  PPKVKF    +HPN+   +G ICL IL +DQ W  A+TL+ ++L +Q L
Sbjct: 61  TVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDL 119
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           + +  P+ P      + +  N
Sbjct: 120 LDSPNPNSPAQEPAWRSFSRN 140

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGE--IAGPPDTPYEGGNFVL 58
           M+++  QR++ E K+  K       A  ++  D +    K E  I G   T + GG + +
Sbjct: 3   MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 62
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQ-WAAAMTLRTVLLSLQAL 116
            ++ P  YP  PPKVKF    +HPN+   +G ICL IL +DQ W  A+TL+ ++L +Q L
Sbjct: 63  TVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDL 121
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           + +  P+ P      + +  N
Sbjct: 122 LDSPNPNSPAQEPAWRSFSRN 142

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
           M+ IA  R+ +E K   K       A+  +  D     +  E A  G   TP+EGG F L
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
            +   + YP +PPK KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           +       P  A     Y +N
Sbjct: 123 LNEPNIQSPAQAEAYTIYCQN 143

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
           M+ IA  R+ +E K   K       A+  +  D     +  E A  G   TP+EGG F L
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
            +   + YP +PPK KF   ++HP +   +G +CL IL++   W  A+T++ +LL +Q L
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPLFHPQVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           +      DP  A     Y +N
Sbjct: 123 LNEPNIQDPAQAEAYTIYCQN 143

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MA  A +R+  E+K++  +      A  +   ++N+ E +  I GP DT +E G F   +
Sbjct: 6   MAGTALKRLMAEYKQLTLNPPEGIVAGPMN--EENFFEWEALIMGPEDTCFEFGVFPAIL 63
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLR 107
             P  YP +PPK++F  +++HPNI    G +C+ IL              ++W+   ++ 
Sbjct: 64  SFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVE 122
Query: 108 TVLLSLQALMAAAEPDDPQDAVV--AKQYKENPEMFTLTARH 147
            +LLS+ +++  AEP+D   A V  +K ++++ E F   A+ 
Sbjct: 123 KILLSVVSML--AEPNDESGANVDASKMWRDDREQFYKIAKQ 162

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MA  A +R+  E+K++  +      A  +   ++N+ E +  I GP DT +E G F   +
Sbjct: 3   MAGTALKRLMAEYKQLTLNPPEGIVAGPMN--EENFFEWEALIMGPEDTCFEFGVFPAIL 60
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLR 107
             P  YP +PPK++F  +++HPNI    G +C+ IL              ++W+   ++ 
Sbjct: 61  SFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVE 119
Query: 108 TVLLSLQALMAAAEPDDPQDAVV--AKQYKENPEMFTLTARH 147
            +LLS+ +++  AEP+D   A V  +K ++++ E F   A+ 
Sbjct: 120 KILLSVVSML--AEPNDESGANVDASKMWRDDREQFYKIAKQ 159

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MA  A +R+  E+K++  +      A  +   ++N+ E +  I GP DT +E G F   +
Sbjct: 4   MAGTALKRLMAEYKQLTLNPPEGIVAGPMN--EENFFEWEALIMGPEDTCFEFGVFPAIL 61
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLR 107
             P  YP +PPK++F  +++HPNI    G +C+ IL              ++W+   ++ 
Sbjct: 62  SFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVE 120
Query: 108 TVLLSLQALMAAAEPDDPQDAVV--AKQYKENPEMFTLTARH 147
            +LLS+ +++  AEP+D   A V  +K ++++ E F   A+ 
Sbjct: 121 KILLSVVSML--AEPNDESGANVDASKMWRDDREQFYKIAKQ 160

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
           M+ IA  R+ +E K   K       A+  +  D     +  E A  G   TP+EGG F L
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
            +   + YP +PPK KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q L
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           +       P  A     Y +N
Sbjct: 123 LNEPNIQAPAQAEAYTIYCQN 143

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Query: 43  IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ--W 100
           I G P T +EGG + L +  PE YP  PPK +F   ++HPN+   +G +CL IL ++  W
Sbjct: 51  IPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYP-SGTVCLSILNEEEGW 109
Query: 101 AAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 132
             A+T++ +LL +Q L+     DDP  A  A+
Sbjct: 110 KPAITIKQILLGIQDLL-----DDPNIASPAQ 136

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGE--IAGPPDTPYEGGNFVL 58
           M+ IA  R+ +E K   K       A+  +  D     +  E  I G   TP+EGG F L
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
            +   + YP +PPK KF   ++HPN+   +G + L IL++   W  A+T++ +LL +Q L
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVXLSILEEDKDWRPAITIKQILLGIQEL 119
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           +      DP  A     Y +N
Sbjct: 120 LNEPNIQDPAQAEAYTIYXQN 140

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 43  IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAA 102
           I  P +  Y  G+    +   E YP  PPKV  L KI+HPNI  + G +CL+IL++ W+ 
Sbjct: 69  IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNID-LKGNVCLNILREDWSP 127
Query: 103 AMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTAR 146
           A+ L++++  L  L     P+DP +   AK   E  + F    R
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
           M+ IA  R+ +E K   K       A+  +  D     +  E A  G   TP+EGG F L
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
            +   + YP +PPK KF   ++HPN+   +G + L IL++   W  A+T++ +LL +Q L
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVSLSILEEDKDWRPAITIKQILLGIQEL 119
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
           +      DP  A     Y +N
Sbjct: 120 LNEPNIQDPAQAEAYTIYCQN 140

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 20/161 (12%)
Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
           A  A +R+  E+K++  +      A  +   ++N+ E +  I GP DT +E G F   + 
Sbjct: 1   AGTALKRLMAEYKQLTLNPPEGIVAGPMN--EENFFEWEALIMGPEDTCFEFGVFPAILS 58
Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRT 108
            P  YP +PPK++F  +++HPNI    G +C+ IL              ++W+   ++  
Sbjct: 59  FPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 117
Query: 109 VLLSLQALMAAAEPDDPQDAVV--AKQYKENPEMFTLTARH 147
           +LLS+ +++  AEP+D   A V  +K ++++ E F   A+ 
Sbjct: 118 ILLSVVSML--AEPNDESGANVDASKMWRDDREQFYKIAKQ 156

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 16/131 (12%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M+  A +R+ +E +++IK       A      ++N       I GPPDTPY  G F  ++
Sbjct: 1   MSKTAQKRLLKELQQLIKDSPPGIVAGPKS--ENNIFIWDCLIQGPPDTPYADGVFNAKL 58
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLR 107
           + P+ YP +PPK+ F   I HPNI    G +C+ IL             +++W+   ++ 
Sbjct: 59  EFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVE 117
Query: 108 TVLLSLQALMA 118
            +LLS+ ++++
Sbjct: 118 KILLSVMSMLS 128

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 46  PPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAM 104
           P   PY    F L I  P  YPF PP +KF TKI+HPN+    G ICL I+  + W    
Sbjct: 43  PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCT 101
Query: 105 TLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
               VL +L  L+      +P    +A    +NPE+F   A  +T
Sbjct: 102 KTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFT 146

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 46  PPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAM 104
           P   PY    F L I  P  YPF PP +KF TKI+HPN+    G ICL I+  + W    
Sbjct: 40  PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCT 98
Query: 105 TLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
               VL +L  L+      +P    +A    +NPE+F   A  +T
Sbjct: 99  KTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFT 143

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 32  IDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAI 91
           + ++  E + EI G  ++ ++G  F L I     Y + PP VKF+T  +HPN+   TG  
Sbjct: 48  VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQP 107
Query: 92  CLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTAR 146
           C+D L +  +W    TL ++LL+LQ +++    ++P +   A+   ++  ++    R
Sbjct: 108 CIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 164

>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 138

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           R+  E ++  K      C+  L   DD   T+  G I GPP + +E   + L I     Y
Sbjct: 10  RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 69
Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDI--LKDQWAAAMTLRTVLLSLQALMAA 119
           P +PPKV F++KI  P ++  TG +  D   L+D W  A T+ T+LL L+  MA 
Sbjct: 70  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD-WKRAYTMETLLLDLRKEMAT 123

>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN Length = 137

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           R+  E ++  K      C+  L   DD   T+  G I GPP + +E   + L I     Y
Sbjct: 9   RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 68
Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDI--LKDQWAAAMTLRTVLLSLQALMAA 119
           P +PPKV F++KI  P ++  TG +  D   L+D W  A T+ T+LL L+  MA 
Sbjct: 69  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD-WKRAYTMETLLLDLRKEMAT 122

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 32  IDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW--HPNISSVTG 89
           + ++ T+   ++ G P T YEG  F L  K    YPF+ P+V F  +    HP++ S  G
Sbjct: 49  VQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYS-NG 107
Query: 90  AICLDILKDQWAAAMTLRTVLLSLQALMA 118
            ICL IL + W+ A+++++V LS+ ++++
Sbjct: 108 HICLSILTEDWSPALSVQSVCLSIISMLS 136

>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 43  IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH-----PNISSVTGAICLDIL- 96
           I GP DTPY  G F  ++  P+ YP +PP V   T   H     PN+ +  G +CL IL 
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSILN 174
Query: 97  ------KDQW-AAAMTLRTVLLSLQALMAAAEP 122
                 +++W     +   VL+S+Q+L+  AEP
Sbjct: 175 TWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           A QR+K+++  + K      CA   E +  N  E    + GP  TPYEGG +  ++  P 
Sbjct: 15  ATQRLKQDYLRIKKDPVPYICA---EPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPR 71
Query: 65  TYPFNPPKVKFLTKIWHPNIS-SVTGAICL---DILKDQWAAAMTLRTVLLSLQALMAAA 120
            +PF PP +  +T    PN        +CL   D   D W  A ++ T+L  L + M   
Sbjct: 72  EFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEK 127
Query: 121 EP 122
            P
Sbjct: 128 GP 129

>pdb|1J74|A Chain A, Crystal Structure Of Mms2 Length = 145

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 1   MANIAAQRIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEG 53
           MA     ++ R F+ + + EE    V    +   L DD     T   G I GPP T YE 
Sbjct: 1   MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYEN 60
Query: 54  GNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVL 110
             + L+++    YP  PP V+F+TKI    I++ +G +    + +L  +W  + +++ VL
Sbjct: 61  RIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVL 119
Query: 111 LSLQALMAAAE 121
             L+ LM + E
Sbjct: 120 QELRRLMMSKE 130

>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 1   MANIAAQRIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEG 53
           MA     ++ R F+ + + EE    V    +   L DD     T   G I GPP T YE 
Sbjct: 6   MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYEN 65
Query: 54  GNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVL 110
             + L+++    YP  PP V+F+TKI    I++ +G +    + +L  +W  + +++ VL
Sbjct: 66  RIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVL 124
Query: 111 LSLQALMAAAE 121
             L+ LM + E
Sbjct: 125 QELRRLMMSKE 135

>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 139

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 8   RIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFVLEI 60
           ++ R F+ + + EE    V    +   L DD     T   G I GPP T YE   + L++
Sbjct: 2   KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKV 61
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALM 117
           +    YP  PP V+F+TKI    I++ +G +    + +L  +W  + +++ VL  L+ LM
Sbjct: 62  ECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 120
Query: 118 AAAE 121
            + E
Sbjct: 121 MSKE 124

>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease Length = 138

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 8   RIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFVLEI 60
           ++ R F+ + + EE    V    +   L DD     T   G I GPP T YE   + L++
Sbjct: 3   KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKV 62
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALM 117
           +    YP  PP V+F+TKI    I++ +G +    + +L  +W  + +++ VL  L+ LM
Sbjct: 63  ECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 121
Query: 118 AAAE 121
            + E
Sbjct: 122 MSKE 125

>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2 Variant 1 (Uev- 1) Length = 160

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 8   RIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFVLEI 60
           ++ R F+ + + EE    V    +   L DD     T   G I GPP T YE   + L+I
Sbjct: 23  KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 82
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALM 117
           +    YP  PP V+F+TKI    ++S  G +    + +L  +W  + +++ VL  L+ LM
Sbjct: 83  ECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 141
Query: 118 AAAE 121
            + E
Sbjct: 142 MSKE 145

>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 142

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 8   RIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFVLEI 60
           ++ R F+ + + EE    V    +   L DD     T   G I GPP T YE   + L+I
Sbjct: 5   KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKI 64
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALM 117
           +    YP  PP V+F+TKI    ++S  G +    + +L  +W  + +++ VL  L+ LM
Sbjct: 65  ECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 123
Query: 118 AAAE 121
            + E
Sbjct: 124 MSKE 127

>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating Enzyme Variant Uev1a Length = 170

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 8   RIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFVLEI 60
           ++ R F+ + + EE    V    +   L DD     T   G I GPP T YE   + L+I
Sbjct: 33  KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 92
Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALM 117
           +    YP  PP V+F+TKI    ++S  G +    + +L  +W  + +++ VL  L+ LM
Sbjct: 93  ECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 151
Query: 118 AAAE 121
            + E
Sbjct: 152 MSKE 155

>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci) Involved In Embryo Attachment And Implantation Length = 186

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAG-PPDTPY----------EG 53
           A+ R+ +E +++ +S+        +ELI+D+  +   ++    PD+P           EG
Sbjct: 28  ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEG 87
Query: 54  GNFVL-EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRTVLL 111
             ++L      + +PF+PP V+ +  +         GA+C+++L  Q W++A ++ +V++
Sbjct: 88  IEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIM 147
Query: 112 SLQALMAAAE 121
            + A +   +
Sbjct: 148 QINATLVKGK 157

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           A  RI++E    +K+  +  C I +     N      +  G  +T Y    + ++I  P+
Sbjct: 21  ANYRIQKELNNFLKNPPI-NCTIDVH--PSNIRIWIVQYVGLENTIYANEVYKIKIIFPD 77
Query: 65  TYPFNPPKVKFLTK-IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
            YP  PP V FL K   H ++ S  G ICL +L D +  ++++  ++LS+ +++++A+
Sbjct: 78  NYPLKPPIVYFLQKPPKHTHVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAK 134

>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAG-PPDTPY----------EG 53
           A  R+ +E +++ +S+        +EL++D+  +   ++     D+            EG
Sbjct: 7   ATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEG 66
Query: 54  GNFVL-EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRTVLL 111
            +F+L      + +PF+PP V+ ++ +         GAIC+++L  Q W++A ++ +V++
Sbjct: 67  ADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIM 126
Query: 112 SLQALMAAAEPDDPQDAVVAKQYKENPEMFTLT 144
            + A +   +           Q+  N   ++LT
Sbjct: 127 QISATLVKGKA--------RVQFGANKSQYSLT 151

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M N A  RI++E    + +  +  C   L++  +N      +  G  +T Y    + L+I
Sbjct: 4   MGN-ANYRIQKELHNFLNNPPI-NCT--LDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59
Query: 61  KVPETYPFNPPKVKFLTK-IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAA 119
             P+ YP  PP V FL K   H ++ S  G ICL +L D +  ++++  ++LS+ +++++
Sbjct: 60  IFPDDYPLKPPIVYFLQKPPKHTHVYS-NGDICLSLLGDDYNPSLSISGLVLSIISMLSS 118
Query: 120 AE 121
           A+
Sbjct: 119 AK 120

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           R+  E +   K       +  LE  DD   +     I G P T +E   + L I   + Y
Sbjct: 25  RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 84
Query: 67  PFNPPKVKFLTKIWHPNISSVTGAI--CLDILKDQWAAAMTLRTVLLSL-QALMAAAEPD 123
           P +PP VKF TKI    + +    I   L ILK+ W    T+ T+L+SL Q ++++A   
Sbjct: 85  PDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSSANKR 143
Query: 124 DPQ 126
            PQ
Sbjct: 144 LPQ 146

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 43  IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAI--CLDILKDQW 100
           I G P T +E   + L I   + YP +PP VKF TKI    + +    I   L ILK+ W
Sbjct: 65  IFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-W 123
Query: 101 AAAMTLRTVLLSL-QALMAAAEPDDPQ 126
               T+ T+L+SL Q ++++A    PQ
Sbjct: 124 NRNYTIETILISLRQEMLSSANKRLPQ 150

>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 42  EIAGPPDTPYEG-GN-FVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ 99
           ++  P D+ Y G GN + L +   + YP  PP V+F+T ++ P ++   G IC  ++ D 
Sbjct: 55  KVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG-EGGICDRMVNDF 113
Query: 100 WA----AAMTLRTVLLSLQALMAAAEPDD--PQDAVVAKQYKEN-PEMFTLTAR 146
           W     A+  ++ VL  + +   +   DD  P+    A+ Y E  P+ F    R
Sbjct: 114 WTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPE----ARHYLEKFPQDFAARVR 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	1e-102
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	1e-100
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	1e-91
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	1e-83
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	5e-79
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	3e-74
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	2e-73
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	3e-72
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	4e-72
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	2e-71
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	2e-71
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	2e-71
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	3e-71
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	4e-71
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	5e-71
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	5e-71
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	3e-70
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	5e-69
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	1e-68
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	3e-66
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	6e-64
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	3e-62
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	4e-62
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	4e-62
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	1e-61
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	1e-61
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	1e-61
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	1e-61
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	3e-61
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-59
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	5e-59
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	1e-58
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	9e-58
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	1e-57
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	7e-55
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	2e-54
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	8e-54
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	9e-54
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	1e-52
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	7e-52
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	2e-50
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	2e-50
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	6e-50
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	9e-49
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	9e-49
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	4e-47
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	9e-47
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	8e-46
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	5e-44
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	7e-36
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	6e-07

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  293 bits (752), Expect = e-102
 Identities = 144/199 (72%), Positives = 170/199 (85%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 2   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 62  KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 121

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L  MG   +   
Sbjct: 122 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 181

Query: 181 VALSTYNWELERATEAIFT 199
           VALS+ +W++E ATE + +
Sbjct: 182 VALSSKSWDVETATELLLS 200

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  289 bits (740), Expect = e-100
 Identities = 143/199 (71%), Positives = 169/199 (84%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 54  MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 113

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 114 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 173

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG P  +P++  KI+ L   G   +   
Sbjct: 174 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVI 233

Query: 181 VALSTYNWELERATEAIFT 199
           VALS+ +W++E ATE + +
Sbjct: 234 VALSSKSWDVETATELLLS 252

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  266 bits (681), Expect = 1e-91
 Identities = 92/198 (46%), Positives = 125/198 (63%), Gaps = 4/198 (2%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
             +    R+++E K++          I   + D N+ E  G I GP  TPYEGG+F L I
Sbjct: 20  QGSKELLRLQKELKDIENENV---QEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAI 76

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
            +P  YP+NPPK+KF+TKIWHPNISS TGAICLD+LK++W+ A+T+RT LLS+QAL++  
Sbjct: 77  TIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDP 136

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
           +PDDPQDA VAK YKEN  +F  TA  WT  +A GP + P  +  I+++T+MG     A+
Sbjct: 137 QPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKEEPR-EVIIKKITEMGFSEDQAK 195

Query: 181 VALSTYNWELERATEAIF 198
            AL   NW    A   + 
Sbjct: 196 NALIKANWNETLALNTLL 213

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  244 bits (624), Expect = 1e-83
 Identities = 128/155 (82%), Positives = 143/155 (92%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 5   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 64

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 65  KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 124

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG 155
           EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG 
Sbjct: 125 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  233 bits (597), Expect = 5e-79
 Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 13/204 (6%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
            A+RI +E +  +K +  A   ++  + + +   LKG   GPP TPYEGG FV++I+VP 
Sbjct: 3   RAKRIMKEIQA-VKDDPAAHITLEF-VSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YPF PPK++F TK++HPNISSVTGAICLDIL++ W+  +TL++ L+SLQAL+ + EP+D
Sbjct: 61  EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120

Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF-----------DSKIQRLTDMG 173
           PQDA VA+ Y  + E F  TA  WT +YA   S                   I      G
Sbjct: 121 PQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVEESDLYGIDHDLIDEFESQG 180

Query: 174 VMSHDARVALSTYNWELERATEAI 197
                    L     +     +  
Sbjct: 181 FEKDKIVEVLRRLGVKSLDPNDNN 204

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  221 bits (564), Expect = 3e-74
 Identities = 73/159 (45%), Positives = 101/159 (63%), Gaps = 10/159 (6%)

Query: 5   AAQRIKREFKEVIKSEEVAKCA----------IKLELIDDNYTELKGEIAGPPDTPYEGG 54
              R+ +E  ++ + +                +  +++  +    +G IAGP  TPYEGG
Sbjct: 33  EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGG 92

Query: 55  NFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 114
           +F L+I +P  YP+NPPK+KF+TKIWHPNISS TGAICLDILK +W+ A+T+RT LLS+Q
Sbjct: 93  HFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQ 152

Query: 115 ALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           A++A   P DPQDA VAK   EN  +F  TA+ WT  +A
Sbjct: 153 AMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 191

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  217 bits (556), Expect = 2e-73
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 6   AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPET 65
              + R+  +  K          LEL + +  +      GP  T YEGG + + + +P+ 
Sbjct: 1   GTSLTRKQCDFTKLIM---AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDD 57

Query: 66  YPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPDD 124
           YPF  P + F+ K+ HPN+   +G++CLD++   W    +L  V  + L  L+    P D
Sbjct: 58  YPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSD 117

Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P ++  A    ++  ++    + +  +YA
Sbjct: 118 PLNSDAASLLMKDKNIYEEKVKEYVKLYA 146

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  214 bits (547), Expect = 3e-72
 Identities = 76/149 (51%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
            A+RI +E +  +K +  A   ++  + + +   LKG   GPP TPYEGG FV++I+VP 
Sbjct: 2   RAKRIMKEIQA-VKDDPAAHITLEF-VSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 59

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YPF PPK++F TK++HPNISSVTGAICLDILK+ W+  +TL++ L+SLQAL+ + EP+D
Sbjct: 60  EYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPND 119

Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           PQDA VA+ Y  + E F  TA  WT +YA
Sbjct: 120 PQDAEVAQHYLRDRESFNKTAALWTRLYA 148

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  214 bits (547), Expect = 4e-72
 Identities = 68/149 (45%), Positives = 93/149 (62%), Gaps = 4/149 (2%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
             +RI +E + +          I    + +NY      I GP  TPYEGG + LE+ +PE
Sbjct: 2   IPRRITKETQNLANEPP---PGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPE 58

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YP  PPKV+FLTKI+HPNI    G ICLDILKD+W+ A+ +RTVLLS+QAL+++ EPDD
Sbjct: 59  QYPMEPPKVRFLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDD 117

Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P D+ VA+ +K++       AR W  +YA
Sbjct: 118 PLDSKVAEHFKQDKNDAEHVARQWNKIYA 146

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  212 bits (543), Expect = 2e-71
 Identities = 64/154 (41%), Positives = 91/154 (59%), Gaps = 4/154 (2%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
             +RI +E ++++         I  E  DDN    +  I GP  +PYE G F LE+ +P+
Sbjct: 6   LPKRIIKETEKLVSDPV---PGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 62

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YP   PKV+FLTKI+HPNI    G ICLD+LK  W+ A+ +RTVLLS+QAL+A+  P+D
Sbjct: 63  DYPMEAPKVRFLTKIYHPNIDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPND 121

Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSK 158
           P    VA+ + +N +     AR WT +YA    +
Sbjct: 122 PLANDVAEDWIKNEQGAKAKAREWTKLYAKKKPE 155

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  214 bits (546), Expect = 2e-71
 Identities = 62/153 (40%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           + + +A+RI++E  ++                 DN  E +  I GPP + YEGG F L+I
Sbjct: 45  LLSTSAKRIQKELADITLDPP---PNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDI 101

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
                YPF PPKV F T+I+H NI+S  G ICLDILKD W+ A+T+  VLLS+ +L+   
Sbjct: 102 TFTPEYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDC 160

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            P DP    +A QY  N       AR WT  YA
Sbjct: 161 NPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 193

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  212 bits (542), Expect = 2e-71
 Identities = 64/152 (42%), Positives = 97/152 (63%), Gaps = 4/152 (2%)

Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
           +++A +RI++E ++ +  +  A+C+     + D+    +  I GPP++PY+GG F L I 
Sbjct: 2   SHMALKRIQKELQD-LGRDPPAQCSA--GPVGDDLFHWQATIMGPPESPYQGGVFFLTIH 58

Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
            P  YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    
Sbjct: 59  FPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPN 117

Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           PDDP    +A+ YK + E +   AR WT  YA
Sbjct: 118 PDDPLVPEIARIYKTDRERYNQLAREWTQKYA 149

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  212 bits (541), Expect = 3e-71
 Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 1/153 (0%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           + N+    I+  +KEV          IK+   +++ T+L+  I GP  TPY GG F +++
Sbjct: 7   VENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKL 66

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
            + + +P +PPK  FLTKI+HPN+ +  G IC+++LK  W A + +R VLL+++ L+   
Sbjct: 67  LLGKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHP 125

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            P+   +    +   EN E +   AR  T ++ 
Sbjct: 126 NPESALNEEAGRLLLENYEEYAARARLLTEIHG 158

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  212 bits (541), Expect = 4e-71
 Identities = 66/153 (43%), Positives = 86/153 (56%), Gaps = 4/153 (2%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
               A +RI +E  ++ K             + D+    +  I GP D+PY GG F L I
Sbjct: 18  YFQGALKRINKELNDLSKDPP---TNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNI 74

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             P  YPF PPKV F TKI+HPNI+S  GAICLDILKDQW+ A+T+  VLLS+ +L+   
Sbjct: 75  HFPSDYPFKPPKVNFTTKIYHPNINS-QGAICLDILKDQWSPALTISKVLLSISSLLTDP 133

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            PDDP    +A  YK +   +  TAR W+  YA
Sbjct: 134 NPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  211 bits (540), Expect = 5e-71
 Identities = 70/152 (46%), Positives = 94/152 (61%), Gaps = 4/152 (2%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
             +RI +E + ++         IK E  + N       IAGP D+P+EGG F LE+ +PE
Sbjct: 6   LPRRIIKETQRLLAEPV---PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 62

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YP   PKV+F+TKI+HPN+    G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDD
Sbjct: 63  EYPMAAPKVRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 121

Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYAGGP 156
           P    VA+Q+K N      TAR WT +YA   
Sbjct: 122 PLANDVAEQWKTNEAQAIETARAWTRLYAMNN 153

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  212 bits (541), Expect = 5e-71
 Identities = 64/153 (41%), Positives = 93/153 (60%), Gaps = 4/153 (2%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
             ++A +RI +E  + +  +  A+C+     + D+    +  I GP D+PY+GG F L I
Sbjct: 16  RGSMALKRIHKELND-LARDPPAQCSA--GPVGDDMFHWQATIMGPNDSPYQGGVFFLTI 72

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             P  YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+   
Sbjct: 73  HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP 131

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            PDDP    +A+ YK + E +   AR WT  YA
Sbjct: 132 NPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  210 bits (536), Expect = 3e-70
 Identities = 63/164 (38%), Positives = 88/164 (53%), Gaps = 8/164 (4%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
            A R+KRE   +          I      D   +L+ +I G  +TPYE G F LE+ +PE
Sbjct: 5   RASRLKRELHMLATEPP---PGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 61

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDIL----KDQWAAAMTLRTVLLSLQALMAAA 120
            YPF PP+++FLT I+HPNI S  G ICLD+L    K  W  ++ + TVL S+Q LM+  
Sbjct: 62  RYPFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 120

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDS 164
            PDDP  A ++ ++K N   F   AR WT  +A    K  + + 
Sbjct: 121 NPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEM 164

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  207 bits (528), Expect = 5e-69
 Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 5/157 (3%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
             +  +R   + ++    +   +      D   E   E  GP  TPYE G ++L +++P 
Sbjct: 10  NLRSNRRREMDYMRLCN-STRKV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPS 65

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPD 123
            YPF  P + F  +I HPN+   +G++CLD++   W     L  +  + L  L+    P 
Sbjct: 66  DYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPS 125

Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNP 160
           DP +   A     +   F    R   + +A       
Sbjct: 126 DPLNVQAAHLLHADRVGFDALLREHVSTHATPQKALE 162

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  206 bits (526), Expect = 1e-68
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
             +R+  +  ++I+S+           I     E   +  GP  TPYEGG + + + +P+
Sbjct: 26  GKRRMDTDVIKLIESKHEV-------TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 78

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPD 123
            YPF  P + F+ KI+HPNI   +G +CLD++   W A   L  +  S L  L+A   P 
Sbjct: 79  KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPI 138

Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPD 161
           DP +   A  Y   PE +    + +   YA   +    
Sbjct: 139 DPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQ 176

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  199 bits (509), Expect = 3e-66
 Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 1   MANIAAQRIKREFKEVIKSEE--------VAKCAIKLELI-DDNYTELKGEIAGPPDTPY 51
           MA+    RI +E+K ++K+                 L  I + + ++ +  I+GP DTPY
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62

Query: 52  EGGNFVLEIKVPETYPFNPPKVKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTV 109
           E   F + I+VP +YP NPPK+ F+   I H N+ S TG ICL+ILK ++W     L   
Sbjct: 63  ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122

Query: 110 LLSLQALMAAAEPDDPQDAVVAKQYKEN-PEMFTLTARHWTNVYA 153
           + ++  L+     D P D  +    +      +    +++     
Sbjct: 123 VHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERE 167

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  193 bits (493), Expect = 6e-64
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MA+ A  RI+++  E+   +    C I      D+    K  I  P +  Y+ G FV   
Sbjct: 3   MASAAQLRIQKDINELNLPKT---CDISFSD-PDDLLNFKLVI-CPDEGFYKSGKFVFSF 57

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           KV + YP +PPKVK  T ++HPNI    G +CL+IL++ W   +T+ +++  LQ L    
Sbjct: 58  KVGQGYPHDPPKVKCETMVYHPNIDL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEP 116

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFD 163
            P+DP +   A+  + N  +F    +       GG   +  F+
Sbjct: 117 NPEDPLNKEAAEVLQNNRRLFEQNVQRSM---RGGYIGSTYFE 156

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  189 bits (481), Expect = 3e-62
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 7/154 (4%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MA  A++R+ +E +E I+   +        + + N    +G I  P + PY+ G F +EI
Sbjct: 1   MA--ASRRLMKELEE-IRKCGMKNFRNIQ-VDEANLLTWQGLI-VPDNPPYDKGAFRIEI 55

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAA 119
             P  YPF PPK+ F TKI+HPNI    G +CL ++  + W  A     V+ SL AL+  
Sbjct: 56  NFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVND 114

Query: 120 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            +P+ P  A +A++Y ++ + F   A  +T  Y 
Sbjct: 115 PQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  197 bits (501), Expect = 4e-62
 Identities = 71/199 (35%), Positives = 104/199 (52%), Gaps = 8/199 (4%)

Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
             +A +RI +E  + +  +  A+C+     + D+    +  I GP D+PY+GG F L I 
Sbjct: 1   GAMALKRIHKELND-LARDPPAQCSA--GPVGDDMFHWQATIMGPNDSPYQGGVFFLTIH 57

Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
            P  YPF PPKV F T+I+HPNI+S  G+I LDIL+ QW+ A+T+  VLLS+ +L+    
Sbjct: 58  FPTDYPFKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPN 116

Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF----DSKIQRLTDMGVMSH 177
           PDDP    +A+ YK + E +   AR WT  YA G S   +       +IQ+   +     
Sbjct: 117 PDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGSAYDEAIMAQQDRIQQEIAVQNPLV 176

Query: 178 DARVALSTYNWELERATEA 196
             R+ LS    E       
Sbjct: 177 SERLELSVLYKEYAEDDNI 195

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  189 bits (481), Expect = 4e-62
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
            ++R+++E + ++ S +     I      DN  +    + GP DT YE   + L ++ P 
Sbjct: 10  VSKRLQQELRTLLMSGD---PGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YP+ PP VKF T  WHPN+   +G ICLDILK+ W A+  +RT+LLSLQ+L+       
Sbjct: 67  DYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNAS 125

Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P +A  A  +  N   +            
Sbjct: 126 PLNAQAADMWS-NQTEYKKVLHEKYKTAQ 153

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  189 bits (481), Expect = 1e-61
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 5/153 (3%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
                 +R+++E   ++ S +     I      DN  +  G I G   T YE   + L +
Sbjct: 27  ARGPVGKRLQQELMTLMMSGD---KGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSL 83

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           + P  YP+N P VKFLT  +HPN+ +  G I LDILK++W+A   +RT+LLS+Q+L+   
Sbjct: 84  EFPSGYPYNAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEP 142

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
             D P +   A+ +K NP  F    +   +   
Sbjct: 143 NIDSPLNTHAAELWK-NPTAFKKYLQETYSKQV 174

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  188 bits (480), Expect = 1e-61
 Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 5/151 (3%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M   A   + R+F ++ ++       I  + + ++  E + EI G  ++ ++G  F L I
Sbjct: 20  MHGRAYLLLHRDFCDLKENNY---KGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTI 76

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMA 118
                Y + PP VKF+T  +HPN+   TG  C+D L   ++W    TL ++LL+LQ +++
Sbjct: 77  HFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLS 136

Query: 119 AAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
               ++P +   A+   ++  ++    R + 
Sbjct: 137 NPVLENPVNLEAARILVKDESLYRTILRLFN 167

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  189 bits (481), Expect = 1e-61
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 7/164 (4%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKL--ELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKV 62
           A  R+KR+    +         +    +  D + +     I  P +  Y  G+    +  
Sbjct: 30  ARIRLKRDLDS-LDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDF 88

Query: 63  PETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 122
            E YP  PPKV  L KI+HPNI    G +CL+IL++ W+ A+ L++++  L  L     P
Sbjct: 89  NEVYPIEPPKVVCLKKIFHPNIDL-KGNVCLNILREDWSPALDLQSIITGLLFLFLEPNP 147

Query: 123 DDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKI 166
           +DP +   AK   E  + F    R   +  +    ++  +D+ +
Sbjct: 148 NDPLNKDAAKLLCEGEKEFAEAVRLTMSGGS---IEHVKYDNIV 188

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  188 bits (479), Expect = 1e-61
 Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +  + + +E  E+  +     C  K+   D N          P +  Y+GG F  E +VP
Sbjct: 14  VRDKLLVKEVAELEAN---LPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVP 70

Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVLLSLQALM 117
           + Y   PPKVK LTKIWHPNI+  TG ICL +L++       WA   TL+ V+  L +L 
Sbjct: 71  DAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLF 129

Query: 118 AAA-EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
                 DDP +   A+ +  + E F      +   YA
Sbjct: 130 TDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  187 bits (477), Expect = 3e-61
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 9/163 (5%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
            A+ A  RI+++  E+   +    C I      D+    K  I  P +  Y+ G FV   
Sbjct: 23  KASAAQLRIQKDINELNLPKT---CDISFSD-PDDLLNFKLVI-CPDEGFYKSGKFVFSF 77

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           KV + YP +PPKVK  T ++HPNI    G + L+IL++ W   +T+ +++  LQ L    
Sbjct: 78  KVGQGYPHDPPKVKCETMVYHPNIDL-EGNVALNILREDWKPVLTINSIIYGLQYLFLEP 136

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFD 163
            P+DP +   A+  + N  +F    +       GG   +  F+
Sbjct: 137 NPEDPLNKEAAEVLQNNRRLFEQNVQRSM---RGGYIGSTYFE 176

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  182 bits (463), Expect = 2e-59
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)

Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
           +++A+ R+ +E ++ ++ +            D N       +  P   PY    F L I 
Sbjct: 2   SHMASMRVVKELED-LQKKPPPYLRNLS-SDDANVLVWHALL-LPDQPPYHLKAFNLRIS 58

Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAA 120
            P  YPF PP +KF TKI+HPN+    G ICL I+  + W        VL +L  L+   
Sbjct: 59  FPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCTKTCQVLEALNVLVNRP 117

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
              +P    +A    +NPE+F   A  +T  + 
Sbjct: 118 NIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 150

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  180 bits (459), Expect = 5e-59
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 3/137 (2%)

Query: 1   MANIAAQ-RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVL 58
           M+ +    R+  E ++  K      C+  L   DD   T+  G I GPP + +E   + L
Sbjct: 2   MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 61

Query: 59  EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD-QWAAAMTLRTVLLSLQALM 117
            I     YP +PPKV F++KI  P ++  TG +  D      W  A T+ T+LL L+  M
Sbjct: 62  SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEM 121

Query: 118 AAAEPDDPQDAVVAKQY 134
           A       +     + +
Sbjct: 122 ATPANKKLRQPKEGETF 138

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  180 bits (458), Expect = 1e-58
 Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 4/149 (2%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M+  A +R+ R+FK  ++ +  A  +   +  D+N       I GP DTP++GG F L +
Sbjct: 1   MSTPARKRLMRDFKR-LQQDPPAGISGAPQ--DNNIMLWNAVIFGPDDTPWDGGTFKLSL 57

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           +  E YP  PP V+F+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+L+   
Sbjct: 58  QFSEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 116

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWT 149
            P+ P ++  A+ Y E+   +    R   
Sbjct: 117 NPNSPANSEAARMYSESKREYNRRVRDVV 145

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  178 bits (453), Expect = 9e-58
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 7/158 (4%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFV 57
           M+++  QR++ E K+  + +       K     D   +  + +  I G   T + GG + 
Sbjct: 1   MSSLCLQRLQEERKK-WRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 59

Query: 58  LEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQA 115
           + ++ P  YP  PPKVKF    +HPN+   +G ICL IL +   W  A+TL+ ++L +Q 
Sbjct: 60  ITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQD 118

Query: 116 LMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           L+ +  P+ P      + +  N   +          Y+
Sbjct: 119 LLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  178 bits (453), Expect = 1e-57
 Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 4/161 (2%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M+  A +R+ R+FK  +K +     +       DN       I GP DTPYE G F L +
Sbjct: 1   MSTPARRRLMRDFKR-MKEDAPPGVSASPL--PDNVMVWNAMIIGPADTPYEDGTFRLLL 57

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           +  E YP  PP VKFL++++HPN+ +  G ICLDIL+++W     + ++L S+Q+L    
Sbjct: 58  EFDEEYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDP 116

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPD 161
            P  P +   A  +K++   +    +            + D
Sbjct: 117 NPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMDDDD 157

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  170 bits (434), Expect = 7e-55
 Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 7/158 (4%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFV 57
           M+ IA  R+ +E K   + +             D   N    +  I G   TP+EGG F 
Sbjct: 4   MSGIALSRLAQERKA-WRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 62

Query: 58  LEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQA 115
           L +   + YP +PPK KF   ++HPN+   +G +CL IL++   W  A+T++ +LL +Q 
Sbjct: 63  LRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQE 121

Query: 116 LMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           L+       P  A     Y +N   +    R     +A
Sbjct: 122 LLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  169 bits (431), Expect = 2e-54
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 15/160 (9%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCA---------IKLELIDDNYTELKGEIAGPPDTPY 51
           M NI+ +RI ++ K +++  +    A             +  D       ++  P D+ Y
Sbjct: 5   MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVY 64

Query: 52  --EGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 109
              G  + L +   + YP  PP V+F+T ++ P ++   G IC  ++ D W        V
Sbjct: 65  GGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG-EGGICDRMVNDFWTPDQHASDV 123

Query: 110 L---LSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTAR 146
           +   L        +  DD  +       ++ P+ F    R
Sbjct: 124 IKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  168 bits (427), Expect = 8e-54
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLE 59
           +      R+  E +E  K       +  LE  +D   T   G I GPP T YE   + L+
Sbjct: 22  VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 81

Query: 60  IKVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQAL 116
           I+    YP  PP V+F+TKI    ++S  G +    + +L  +W  + +++ VL  L+ L
Sbjct: 82  IECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRL 140

Query: 117 MAAAEPDDPQDAVVAKQYK 135
           M + E          + Y 
Sbjct: 141 MMSKENMKLPQPPEGQCYS 159

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  168 bits (427), Expect = 9e-54
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCA---IKLELIDDNYTELKGEIAGPPDTPYEGGNFV 57
            +++   R++ E K+  + +          K      +    K  I G P T +EGG + 
Sbjct: 7   HSSLCKTRLQEERKQ-WRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYK 65

Query: 58  LEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQA 115
           L +  PE YP  PPK +F   ++HPN+   +G +CL IL ++  W  A+T++ +LL +Q 
Sbjct: 66  LTMAFPEEYPTRPPKCRFTPPLFHPNVYP-SGTVCLSILNEEEGWKPAITIKQILLGIQD 124

Query: 116 LMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           L+       P        +K++   +    R      A
Sbjct: 125 LLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  165 bits (420), Expect = 1e-52
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLE 59
           +      R+  E +E  K       +  LE  +D   T   G I GPP T YE   + L+
Sbjct: 32  VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91

Query: 60  IKVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQAL 116
           I+    YP  PP V+F+TKI    ++S  G +    + +L  +W  + +++ VL  L+ L
Sbjct: 92  IECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRL 150

Query: 117 MAAAEPDDPQDAVVAKQYK 135
           M + E          + Y 
Sbjct: 151 MMSKENMKLPQPPEGQCYS 169

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  163 bits (414), Expect = 7e-52
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
           A  A +R+  E+K+ +             + ++N+ E +  I GP DT +E G F   + 
Sbjct: 1   AGTALKRLMAEYKQ-LTLNPPEGIVAGP-MNEENFFEWEALIMGPEDTCFEFGVFPAILS 58

Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRT 108
            P  YP +PPK++F  +++HPNI    G +C+ IL              ++W+   ++  
Sbjct: 59  FPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 117

Query: 109 VLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 154
           +LLS+ +++A    +   +   +K ++++ E F   A+       G
Sbjct: 118 ILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLG 163

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  159 bits (405), Expect = 2e-50
 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 16/162 (9%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M+  A +R+ +E ++ +  +         +  ++N       I GPPDTPY  G F  ++
Sbjct: 1   MSKTAQKRLLKELQQ-LIKDSPPGIVAGPK-SENNIFIWDCLIQGPPDTPYADGVFNAKL 58

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLR 107
           + P+ YP +PPK+ F   I HPNI    G +C+ IL             +++W+   ++ 
Sbjct: 59  EFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVE 117

Query: 108 TVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
            +LLS+ ++++    +   +      +++N   F    +   
Sbjct: 118 KILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 159

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  158 bits (402), Expect = 2e-50
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MA+   +R+++E    ++++      +  + + ++ T+   ++ G P T YEG  F L  
Sbjct: 20  MAS-MQKRLQKELLA-LQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLF 77

Query: 61  KVPETYPFNPPKVKFLTK--IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 118
           K    YPF+ P+V F  +    HP++ S  G ICL IL + W+ A+++++V LS+ ++++
Sbjct: 78  KFSSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 136

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  159 bits (403), Expect = 6e-50
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 18/167 (10%)

Query: 1   MANIAAQ-RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLE 59
           M + ++Q  +  E K  ++ E V    + L   + +    +  I GPP+T YEGG F   
Sbjct: 3   MGSPSSQKALLLELKG-LQEEPVEGFRVTLV-DEGDLYNWEVAIFGPPNTYYEGGYFKAR 60

Query: 60  IKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTL 106
           +K P  YP++PP  +FLTK+WHPNI   TG +C+ IL              ++W     +
Sbjct: 61  LKFPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNV 119

Query: 107 RTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           RT+LLS+ +L+       P +   +  Y++  E      R +T++  
Sbjct: 120 RTILLSVISLLNEPNTFSPANVDASVMYRKWKESKG-KDREYTDIIR 165

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  153 bits (390), Expect = 9e-49
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M N A  RI++E      +     C   L++  +N      +  G  +T Y    + L+I
Sbjct: 4   MGN-ANYRIQKELHN-FLNNPPINC--TLDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59

Query: 61  KVPETYPFNPPKVKFLTK-IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAA 119
             P+ YP  PP V FL K   H ++ S  G ICL +L D +  ++++  ++LS+ +++++
Sbjct: 60  IFPDDYPLKPPIVYFLQKPPKHTHVYS-NGDICLSLLGDDYNPSLSISGLVLSIISMLSS 118

Query: 120 AEPDD 124
           A+   
Sbjct: 119 AKEKK 123

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  155 bits (394), Expect = 9e-49
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 16/152 (10%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           +    +  ++R+  E +    V   +  L   D++    +  I GPPDT YEGG F   +
Sbjct: 14  LVPRGSLLLRRQLAE-LNKNPVEGFSAGLI-DDNDLYRWEVLIIGPPDTLYEGGVFKAHL 71

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLR 107
             P+ YP  PPK+KF+T+IWHPN+    G +C+ IL             +++W    T+ 
Sbjct: 72  TFPKDYPLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVE 130

Query: 108 TVLLSLQALMAAAEPDDPQDAVVAKQYKENPE 139
           T+++S+ +++A    D P +   AK+++E+  
Sbjct: 131 TIMISVISMLADPNGDSPANVDAAKEWREDRN 162

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  150 bits (380), Expect = 4e-47
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 5/121 (4%)

Query: 3   NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKV 62
             A  RI++E            C I +     N      +  G  +T Y    + ++I  
Sbjct: 19  GNANYRIQKELNN-FLKNPPINCTIDVH--PSNIRIWIVQYVGLENTIYANEVYKIKIIF 75

Query: 63  PETYPFNPPKVKFLTK-IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
           P+ YP  PP V FL K   H ++ S  G ICL +L D +  ++++  ++LS+ +++++A+
Sbjct: 76  PDNYPLKPPIVYFLQKPPKHTHVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAK 134

Query: 122 P 122
            
Sbjct: 135 E 135

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  150 bits (380), Expect = 9e-47
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
            + R+  E +   K       +  LE  DD   +     I G P T +E   + L I   
Sbjct: 22  RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCD 81

Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAIC---LDILKDQWAAAMTLRTVLLSL-QALMAA 119
           + YP +PP VKF TKI    + +  G +    L ILK+ W    T+ T+L+SL Q ++++
Sbjct: 82  DNYPDSPPTVKFDTKIEMSCVDN-CGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSS 139

Query: 120 AEPDDPQDAVVAKQYKEN 137
           A    PQ     + Y  N
Sbjct: 140 ANKRLPQPN-EGEVYSNN 156

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score =  148 bits (376), Expect = 8e-46
 Identities = 27/159 (16%), Positives = 68/159 (42%), Gaps = 14/159 (8%)

Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAG-PPDTPYEGG------ 54
           +  A+ R+ +E +++ +S+        +ELI+D+  +   ++    PD+P          
Sbjct: 25  SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKE 84

Query: 55  -----NFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRT 108
                  +L     + +PF+PP V+ +  +         GA+C+++L  Q W++A ++ +
Sbjct: 85  KEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIES 144

Query: 109 VLLSLQALMAAAEPDDPQDAVVAK-QYKENPEMFTLTAR 146
           V++ + A +   +      A   +       + +    +
Sbjct: 145 VIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ 183

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  144 bits (364), Expect = 5e-44
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 6/156 (3%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
               A QR+K+++   IK + V       E +  N  E    + GP  TPYEGG +  ++
Sbjct: 11  APTTATQRLKQDYLR-IKKDPVPYICA--EPLPSNILEWHYVVRGPEMTPYEGGYYHGKL 67

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
             P  +PF PP +  +T       ++       D   D W  A ++ T+L  L + M   
Sbjct: 68  IFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEK 127

Query: 121 EPDDP---QDAVVAKQYKENPEMFTLTARHWTNVYA 153
            P            +Q       F L  + +  ++ 
Sbjct: 128 GPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFP 163

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score =  127 bits (319), Expect = 7e-36
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 19/167 (11%)

Query: 5   AAQRIKREFKEVIKSEEVAKCA-IKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
            A+R+ +E   +  S  ++  + + +   ++    +K  I GP DTPY  G F  ++  P
Sbjct: 77  RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFP 136

Query: 64  ETYPFNPPKVKFLTKIWH-----PNISSVTGAICLDILK-------DQW-AAAMTLRTVL 110
           + YP +PP V   T   H     PN+ +  G +CL IL        ++W     +   VL
Sbjct: 137 QDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSILNTWHGRPEEKWNPQTSSFLQVL 195

Query: 111 LSLQALMAAAEP--DDP--QDAVVAKQYKENPEMFTLTARHWTNVYA 153
           +S+Q+L+  AEP  ++P  + +       ++   +    R  T  +A
Sbjct: 196 VSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWA 242

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score = 46.1 bits (109), Expect = 6e-07
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 27  IKLELIDDNYTELKGEIAGPPDTPYEGGNFV--LEIKVPETYPFNPPKVK-FLTKIW--- 80
             L+       EL   + G    PY G  +   + + + +TYP+NPP      T      
Sbjct: 41  PVLDSYGTGSRELM-NLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIK 99

Query: 81  -HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 122
              ++ +  G I L  L +       L  ++  +  +     P
Sbjct: 100 TGKHVDA-NGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.94
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.8
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.74
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.49
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	99.21
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	98.53
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	98.47
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	98.38
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	98.35
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	98.35
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	98.28
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	98.25
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	98.19
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	98.12
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	98.09
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	98.07
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	98.04
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	97.97
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	97.9
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	97.86
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	97.85
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	97.79
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	97.79
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	97.78
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	97.7
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	97.61
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	97.59
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	97.5
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	97.44
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	97.42
2dna_A	67	Unnamed protein product; ubiquitin associated doma	97.37
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	97.37
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	97.31
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	97.13
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	97.12
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	97.07
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	97.05
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	96.83
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	96.74
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	96.69
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	96.31
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	95.79
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	95.77
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	95.25
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	95.19
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	95.07
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	94.39
3e21_A	45	HFAF1, FAS-associated factor 1; UBA, alternative s	94.31
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	92.9
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	91.1
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	90.87
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	90.85
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	89.6
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	88.75
2dam_A	67	ETEA protein; KIAA0887, UBA-like domain, structura	88.6
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	87.89
2dhy_A	67	CUE domain-containing protein 1; structural genomi	87.69
2l2d_A	73	OTU domain-containing protein 7A; UBA fold, struct	87.65
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	87.02
2dzl_A	66	Protein FAM100B; UBA-like domain, structural genom	82.75
4dbg_B	162	Ring finger protein 31; ubiquitin fold, ubiquitina	80.67

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=5.5e-63  Score=398.11  Aligned_cols=199  Identities=72%  Similarity=1.175  Sum_probs=189.7

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      ||+.|.+||++||++|+++...++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   81 (201)
T 3k9o_A            2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   81 (201)
T ss_dssp             --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence            88899999999999998853334679999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCc
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNP  160 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~~~  160 (199)
                      ||||+..+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+++...+
T Consensus        82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~~~~  161 (201)
T 3k9o_A           82 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSP  161 (201)
T ss_dssp             BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCH
T ss_pred             cCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccccccc
Confidence            99999669999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             chHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        161 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +++++|++|++|||+++.|+.||+..+||+++|+|+||+
T Consensus       162 ~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~  200 (201)
T 3k9o_A          162 EYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS  200 (201)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999985

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=2.5e-61  Score=399.21  Aligned_cols=199  Identities=72%  Similarity=1.167  Sum_probs=191.5

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      |++.|.+||++||++|+++...++.|+++.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||
T Consensus        54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~  133 (253)
T 3e46_A           54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW  133 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence            78889999999999998853334689999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCc
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNP  160 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~~~  160 (199)
                      ||||+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+++..++
T Consensus       134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~~~~~  213 (253)
T 3e46_A          134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSP  213 (253)
T ss_dssp             BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCSCCCH
T ss_pred             cCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcccccCcc
Confidence            99999669999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        161 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +++++|++|++|||++++|+.||+..+||+++|+|+||+
T Consensus       214 ~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~  252 (253)
T 3e46_A          214 EYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS  252 (253)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999984

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=1.2e-58  Score=375.58  Aligned_cols=194  Identities=47%  Similarity=0.845  Sum_probs=146.7

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      ++.+.+||++|+++|+++   ++.|+.+.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus        21 ~s~a~~RL~kEl~~l~~~---~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H   97 (216)
T 2pwq_A           21 GSKELLRLQKELKDIENE---NVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH   97 (216)
T ss_dssp             SCHHHHHHHHHHHHHHHS---CTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             cCHHHHHHHHHHHHHHhC---CCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence            467899999999999986   56899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCcc
Q psy17487         82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPD  161 (199)
Q Consensus        82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~~~~  161 (199)
                      |||+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.++... +
T Consensus        98 PNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~~~-~  176 (216)
T 2pwq_A           98 PNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKEE-P  176 (216)
T ss_dssp             TTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC-----
T ss_pred             CCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCccc-c
Confidence            999966899999999999999999999999999999999999999999999999999999999999999999987654 5


Q ss_pred             hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ++.+++++++|||+++.++.||+..+|+.+.|+|+||+
T Consensus       177 ~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~  214 (216)
T 2pwq_A          177 REVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLE  214 (216)
T ss_dssp             --------------------------------------
T ss_pred             hhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhc
Confidence            68999999999999999999999999999999999984

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=3.2e-54  Score=349.36  Aligned_cols=184  Identities=44%  Similarity=0.778  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP   82 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   82 (199)
                      .+.+||++|+++|+++   ++.|+++.+.++ ++++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus         2 ~a~~RL~kEl~~l~~~---~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HP   78 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDD---PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHP   78 (215)
T ss_dssp             TTHHHHHHHHHHHHTT---TCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCS
T ss_pred             hHHHHHHHHHHHHHhC---CCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccC
Confidence            3689999999999886   678999999877 566999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCC--c
Q psy17487         83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKN--P  160 (199)
Q Consensus        83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~~--~  160 (199)
                      ||+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|++.|.++||+|+++||..+...  +
T Consensus        79 NI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~~~~~  158 (215)
T 1tte_A           79 NISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKG  158 (215)
T ss_dssp             SSCSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSCCSSC
T ss_pred             cCcCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCCCccccc
Confidence            99955999999999999999999999999999999999999999999999999999999999999999999886431  1


Q ss_pred             ---c------hHHHHHHHHhcCCChHHHHHHHhhcCCch
Q psy17487        161 ---D------FDSKIQRLTDMGVMSHDARVALSTYNWEL  190 (199)
Q Consensus       161 ---~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  190 (199)
                         +      -+.+|+++++|||+.++|+.||+..|||-
T Consensus       159 ~~~~~~~~g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~  197 (215)
T 1tte_A          159 NVEESDLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKS  197 (215)
T ss_dssp             CCSCSSCCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred             chhhhhhccccHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence               1      26799999999999999999999999986

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=1e-50  Score=315.62  Aligned_cols=155  Identities=83%  Similarity=1.315  Sum_probs=147.1

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      |++.+.+||++|+++|+++...++.|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus         5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   84 (159)
T 2bep_A            5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   84 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence            78889999999999998842224679999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                      ||||+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.+
T Consensus        85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~  159 (159)
T 2bep_A           85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA  159 (159)
T ss_dssp             BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence            999996689999999999999999999999999999999999999999999999999999999999999999974

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-50  Score=313.88  Aligned_cols=152  Identities=46%  Similarity=0.756  Sum_probs=144.6

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      ||..+.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         2 ~s~~~~~RL~kEl~~l~~~---~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   78 (154)
T 2c2v_B            2 GSAGLPRRIIKETQRLLAE---PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIY   78 (154)
T ss_dssp             CSCSCCHHHHHHHHHHHHS---CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred             ccHHHHHHHHHHHHHHHhC---CCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcc
Confidence            6777899999999999986   6789999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP  156 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~  156 (199)
                      ||||+ .+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||..+
T Consensus        79 HPnv~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~~  153 (154)
T 2c2v_B           79 HPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNN  153 (154)
T ss_dssp             CTTBC-TTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cCcCc-cCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCC
Confidence            99999 4899999999999999999999999999999999999999999999999999999999999999999875

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=6.5e-50  Score=308.58  Aligned_cols=150  Identities=43%  Similarity=0.847  Sum_probs=144.7

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      ++.|.+||++|+++|+++   ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus         2 a~~a~~RL~kEl~~l~~~---~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   78 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQD---PPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYH   78 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHS---CCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             chHHHHHHHHHHHHHHhC---CCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCccc
Confidence            467899999999999986   67899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                      |||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.+
T Consensus        79 Pnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p  151 (151)
T 4gpr_A           79 PNINK-NGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP  151 (151)
T ss_dssp             TTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred             ceECC-CCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence            99995 99999999999999999999999999999999999999999999999999999999999999999974

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=2e-50  Score=316.55  Aligned_cols=154  Identities=31%  Similarity=0.608  Sum_probs=147.4

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      ||+.+.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||
T Consensus         1 Ms~~a~~RL~kEl~~l~~~---~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~   77 (169)
T 1ayz_A            1 MSTPARRRLMRDFKRMKED---APPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMF   77 (169)
T ss_dssp             -CCHHHHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             CChHHHHHHHHHHHHHHhC---CCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCc
Confidence            8888999999999999986   5789999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCC
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSK  158 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~  158 (199)
                      ||||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.....
T Consensus        78 HPNI~~-~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~~~~  154 (169)
T 1ayz_A           78 HPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMD  154 (169)
T ss_dssp             CTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCC-CCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCCCcc
Confidence            999995 99999999999999999999999999999999999999999999999999999999999999999987554

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=1.1e-49  Score=307.62  Aligned_cols=151  Identities=32%  Similarity=0.651  Sum_probs=145.5

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      ||+.+.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         1 Ms~~a~~RL~~E~~~l~~~---~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   77 (152)
T 2aak_A            1 MSTPARKRLMRDFKRLQQD---PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMF   77 (152)
T ss_dssp             CCCHHHHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             CChHHHHHHHHHHHHHHhC---CCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcc
Confidence            8888999999999999986   5679999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                      ||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        78 HPnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~  151 (152)
T 2aak_A           78 HPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA  151 (152)
T ss_dssp             CTTBCT-TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred             cCCCCC-CCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence            999995 99999999999999999999999999999999999999999999999999999999999999999863

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.4e-50  Score=310.40  Aligned_cols=149  Identities=30%  Similarity=0.588  Sum_probs=144.3

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      ||..+.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        10 ~s~~~~~RL~kEl~~l~~~---~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   86 (158)
T 1zdn_A           10 LPPHIIRLVYKEVTTLTAD---PPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIF   86 (158)
T ss_dssp             SCHHHHHHHHHHHHHHHHS---CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             cCHHHHHHHHHHHHHHHhC---CCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcc
Confidence            6788999999999999986   5789999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA  153 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a  153 (199)
                      ||||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus        87 HPnv~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A           87 HPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             CTTBCT-TSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCC-CCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            999995 899999999999999999999999999999999999999999999999999999999999999997

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.9e-49  Score=311.18  Aligned_cols=163  Identities=39%  Similarity=0.692  Sum_probs=145.4

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      |..+.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus         2 s~~~~~RL~kEl~~l~~~---~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATE---PPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYH   78 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHS---CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             chHHHHHHHHHHHHHHhC---CCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCcc
Confidence            457899999999999986   67899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCch----hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCC
Q psy17487         82 PNISSVTGAICLDILK----DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPS  157 (199)
Q Consensus        82 PnV~~~~G~icl~~l~----~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~  157 (199)
                      |||+ .+|.||+++|.    ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||....
T Consensus        79 PNv~-~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~~  157 (169)
T 1yh2_A           79 PNID-SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQ  157 (169)
T ss_dssp             TTBC-TTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC-
T ss_pred             ccCC-cCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccccc
Confidence            9999 59999999997    899999999999999999999999999999999999999999999999999999998754


Q ss_pred             CCcchHHHHHHH
Q psy17487        158 KNPDFDSKIQRL  169 (199)
Q Consensus       158 ~~~~~~~~~~~~  169 (199)
                      . ..++.+++++
T Consensus       158 ~-~~~~~~~~~~  168 (169)
T 1yh2_A          158 K-ADEEEMLDNL  168 (169)
T ss_dssp             ------------
T ss_pred             c-CCHHHHhhcC
Confidence            3 4455555554

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=5.7e-49  Score=307.50  Aligned_cols=148  Identities=45%  Similarity=0.816  Sum_probs=142.6

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      ++.+.+||++|+++|+++   ++.|+.+.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus        19 ~~~~~~RL~kEl~~l~~~---~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   95 (166)
T 2ayv_A           19 FQGALKRINKELNDLSKD---PPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH   95 (166)
T ss_dssp             CTTHHHHHHHHHHHHHHS---CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             CcHHHHHHHHHHHHHHhC---CCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence            356889999999999986   67899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487         82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA  153 (199)
Q Consensus        82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a  153 (199)
                      |||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus        96 PNI~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A           96 PNINS-QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             TTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CcCCC-CCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            99994 999999999999999999999999999999999999999999999999999999999999999997

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=5.2e-49  Score=303.22  Aligned_cols=149  Identities=42%  Similarity=0.829  Sum_probs=143.3

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      |..+.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus         2 s~~~~~RL~kEl~~l~~~---~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (150)
T 1z2u_A            2 SHMALKRIQKELQDLGRD---PPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH   78 (150)
T ss_dssp             CCHHHHHHHHHHHHHHHS---CCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             chHHHHHHHHHHHHHHhC---CCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCccc
Confidence            456899999999999986   67799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      |||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        79 Pnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~  150 (150)
T 1z2u_A           79 PNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  150 (150)
T ss_dssp             TTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CcCCC-CCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99995 9999999999999999999999999999999999999999999999999999999999999999984

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=2e-49  Score=305.28  Aligned_cols=147  Identities=53%  Similarity=0.964  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          5 AAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      +.+||++|+++|+++   ++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         2 ~~~RL~~El~~l~~~---~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDD---PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   78 (149)
T ss_dssp             CHHHHHHHHHHHHHC---GGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             hHHHHHHHHHHHHhC---CCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCC
Confidence            579999999999986   568999999887 9999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         84 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        84 V~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      |+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus        79 i~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~  149 (149)
T 1fxt_A           79 ISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             BCSSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred             CcCCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            99559999999999999999999999999999999999999999999999999999999999999999985

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=5.5e-49  Score=307.51  Aligned_cols=150  Identities=27%  Similarity=0.552  Sum_probs=143.0

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecC-CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELID-DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI   79 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   79 (199)
                      |++.|.+||++|+++|+++   ++.|+.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus         1 M~~~a~~RL~kEl~~l~~~---~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i   77 (165)
T 2ucz_A            1 MSKTAQKRLLKELQQLIKD---SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSI   77 (165)
T ss_dssp             -CHHHHHHHHHHHHHHHHS---CCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             CChHHHHHHHHHHHHHHhC---CCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCC
Confidence            8999999999999999886   67899999876 6999999999999999999999999999999999999999999999


Q ss_pred             ccCCccCCCCeeeccCc-------------hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHH
Q psy17487         80 WHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTAR  146 (199)
Q Consensus        80 ~HPnV~~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak  146 (199)
                      |||||+. +|.||+++|             .++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||
T Consensus        78 ~HPNv~~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~  156 (165)
T 2ucz_A           78 LHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK  156 (165)
T ss_dssp             SCTTBCT-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHH
T ss_pred             ccCCCCC-CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHH
Confidence            9999995 999999999             68999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q psy17487        147 HWTNVYAG  154 (199)
Q Consensus       147 ~~~~~~a~  154 (199)
                      +|+++++.
T Consensus       157 ~~~~~~~~  164 (165)
T 2ucz_A          157 LSILKSLG  164 (165)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhh
Confidence            99999864

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=1.4e-48  Score=305.04  Aligned_cols=148  Identities=42%  Similarity=0.822  Sum_probs=143.0

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP   82 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   82 (199)
                      +.+.+||++|+++|+++   ++.|+.+.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus        18 ~~~~~RL~kEl~~l~~~---~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HP   94 (165)
T 2c4o_A           18 SMALKRIHKELNDLARD---PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP   94 (165)
T ss_dssp             HHHHHHHHHHHHHHHSS---CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBT
T ss_pred             cHHHHHHHHHHHHHHhC---CCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCC
Confidence            56899999999999885   678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      ||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        95 nV~~-~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~  165 (165)
T 2c4o_A           95 NINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM  165 (165)
T ss_dssp             TBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             cCCC-CCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9995 9999999999999999999999999999999999999999999999999999999999999999984

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=6.2e-49  Score=304.62  Aligned_cols=150  Identities=32%  Similarity=0.597  Sum_probs=143.4

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      |++.+.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         6 ~~~~~~~RL~kEl~~l~~~---~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   82 (156)
T 2e2c_A            6 ERHSVSKRLQQELRTLLMS---GDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCW   82 (156)
T ss_dssp             SCCCHHHHHHHHHHHHHHH---CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             cchHHHHHHHHHHHHHHhC---CCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcc
Confidence            4567899999999999986   5679999999899999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                      ||||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++|.++||+|+++|+.+
T Consensus        83 HPnv~~-~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~  155 (156)
T 2e2c_A           83 HPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSD  155 (156)
T ss_dssp             BTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCcc-CceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccC
Confidence            999995 99999999999999999999999999999999999999999999999 89999999999999999865

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=5.1e-49  Score=302.97  Aligned_cols=147  Identities=46%  Similarity=0.861  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487          5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI   84 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   84 (199)
                      +.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         2 ~~~RL~kEl~~l~~~---~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   78 (149)
T 2r0j_A            2 IPRRITKETQNLANE---PPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI   78 (149)
T ss_dssp             CCHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             HHHHHHHHHHHHHhC---CCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCC
Confidence            368999999999986   67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         85 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        85 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                      +. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.+
T Consensus        79 ~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~  148 (149)
T 2r0j_A           79 DK-LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN  148 (149)
T ss_dssp             CT-TCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CC-CCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence            95 89999999999999999999999999999999999999999999999999999999999999999975

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=2.2e-48  Score=303.82  Aligned_cols=149  Identities=28%  Similarity=0.559  Sum_probs=142.4

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      |+.|.+||++|+++|+++   ++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         1 a~~a~~RL~kEl~~l~~~---~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   77 (164)
T 3h8k_A            1 AGTALKRLMAEYKQLTLN---PPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMF   77 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHS---CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred             CcHHHHHHHHHHHHHHhC---CCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCc
Confidence            457899999999999986   678999998876 9999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCch-------------hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHH
Q psy17487         81 HPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARH  147 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~  147 (199)
                      ||||+ .+|.||+++|.             ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+
T Consensus        78 HPNV~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~  156 (164)
T 3h8k_A           78 HPNIY-PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ  156 (164)
T ss_dssp             CTTBC-TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHH
T ss_pred             cCCCC-CCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHH
Confidence            99999 59999999996             78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q psy17487        148 WTNVYAG  154 (199)
Q Consensus       148 ~~~~~a~  154 (199)
                      |++++++
T Consensus       157 ~~~~s~~  163 (164)
T 3h8k_A          157 IVQKSLG  163 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhhc
Confidence            9999875

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=1.6e-48  Score=302.58  Aligned_cols=150  Identities=27%  Similarity=0.557  Sum_probs=141.3

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecC-----CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELID-----DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKF   75 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-----dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f   75 (199)
                      ||+.+.+||++|+++|+++   ++.|+.+.+.+     +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus         1 Ms~~a~~RL~kE~~~l~~~---~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f   77 (157)
T 2gjd_A            1 MSSLCLQRLQEERKKWRKD---HPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKF   77 (157)
T ss_dssp             --CHHHHHHHHHHHHHHHC---CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEEC
T ss_pred             CChHHHHHHHHHHHHHHhC---CCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeec
Confidence            8888999999999999986   57899998864     389999999999999999999999999999999999999999


Q ss_pred             ccccccCCccCCCCeeeccCchh--hhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487         76 LTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA  153 (199)
Q Consensus        76 ~t~i~HPnV~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a  153 (199)
                      .|+||||||+ .+|.||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus        78 ~t~i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a  156 (157)
T 2gjd_A           78 PAGFYHPNVY-PSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS  156 (157)
T ss_dssp             CTTCCCTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTB
T ss_pred             cCCCccCCCC-CCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            9999999999 599999999966  7999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q psy17487        154 G  154 (199)
Q Consensus       154 ~  154 (199)
                      .
T Consensus       157 ~  157 (157)
T 2gjd_A          157 K  157 (157)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=4.4e-49  Score=305.18  Aligned_cols=149  Identities=43%  Similarity=0.757  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      .+.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         5 ~~~~RL~kE~~~l~~~---~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   81 (155)
T 1jat_A            5 SLPKRIIKETEKLVSD---PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPN   81 (155)
T ss_dssp             SCCHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             HHHHHHHHHHHHHHhC---CCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCC
Confidence            4679999999999986   6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487         84 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP  156 (199)
Q Consensus        84 V~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~  156 (199)
                      |+ .+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.++
T Consensus        82 v~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~~  153 (155)
T 1jat_A           82 ID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKK  153 (155)
T ss_dssp             BC-TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEEC
T ss_pred             CC-CCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccC
Confidence            99 6999999999999999999999999999999999999999999999999999999999999999999764

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=2.2e-48  Score=310.55  Aligned_cols=151  Identities=48%  Similarity=0.884  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHHHhcCCC----------CCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcc
Q psy17487          4 IAAQRIKREFKEVIKSEEV----------AKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKV   73 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~----------~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v   73 (199)
                      .+.+||++||++|+++...          ...|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|
T Consensus        32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V  111 (193)
T 2f4z_A           32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM  111 (193)
T ss_dssp             CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred             HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence            4789999999999986320          127999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487         74 KFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA  153 (199)
Q Consensus        74 ~f~t~i~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a  153 (199)
                      +|.|+||||||+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus       112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya  191 (193)
T 2f4z_A          112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA  191 (193)
T ss_dssp             EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence            99999999999966899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q psy17487        154 G  154 (199)
Q Consensus       154 ~  154 (199)
                      +
T Consensus       192 ~  192 (193)
T 2f4z_A          192 K  192 (193)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=3.4e-48  Score=302.27  Aligned_cols=149  Identities=26%  Similarity=0.531  Sum_probs=141.2

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEEecCC-----CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccc
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-----NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFL   76 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-----n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   76 (199)
                      |..|.+||++|+++|+++   ++.|+.+.+.++     |+++|+++|.||++|||+||+|++.|.||++||++||+|+|.
T Consensus         8 ~~~~~~RL~kEl~~l~~~---~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~   84 (163)
T 3rcz_B            8 SSLCKTRLQEERKQWRRD---HPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFT   84 (163)
T ss_dssp             -CHHHHHHHHHHHHHHHS---CCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             cHHHHHHHHHHHHHHHhC---CCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEe
Confidence            457899999999999986   678999998766     999999999999999999999999999999999999999999


Q ss_pred             cccccCCccCCCCeeeccCchh--hhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         77 TKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        77 t~i~HPnV~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      |+||||||+ .+|.||+++|..  +|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        85 t~i~HPnV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~  163 (163)
T 3rcz_B           85 PPLFHPNVY-PSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP  163 (163)
T ss_dssp             SCCCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             CCCccCCCC-CCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence            999999999 599999999954  59999999999999999999999999999999999999999999999999999984

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=4.5e-48  Score=301.19  Aligned_cols=151  Identities=30%  Similarity=0.525  Sum_probs=142.6

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecC-----CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELID-----DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKF   75 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-----dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f   75 (199)
                      |++.+.+||++|+++|+++   ++.|+.+.+..     +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|
T Consensus         4 M~~~a~~RL~kE~~~l~~~---~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f   80 (161)
T 2grr_A            4 MSGIALSRLAQERKAWRKD---HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF   80 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHS---CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred             ccHHHHHHHHHHHHHHHhC---CCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEE
Confidence            8888999999999999986   56789888763     589999999999999999999999999999999999999999


Q ss_pred             ccccccCCccCCCCeeeccCchh--hhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487         76 LTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA  153 (199)
Q Consensus        76 ~t~i~HPnV~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a  153 (199)
                      .|+||||||+ .+|.||+++|..  +|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus        81 ~t~i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a  159 (161)
T 2grr_A           81 EPPLFHPNVY-PSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA  159 (161)
T ss_dssp             SSCCCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred             ecCcccCCCC-CCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            9999999999 599999999965  8999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q psy17487        154 GG  155 (199)
Q Consensus       154 ~~  155 (199)
                      ..
T Consensus       160 ~~  161 (161)
T 2grr_A          160 PS  161 (161)
T ss_dssp             C-
T ss_pred             cC
Confidence            63

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.9e-47  Score=305.43  Aligned_cols=148  Identities=42%  Similarity=0.735  Sum_probs=142.7

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP   82 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   82 (199)
                      +.+.+||++||++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||
T Consensus        47 s~a~~RL~kEl~~l~~~---~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP  123 (194)
T 3bzh_A           47 STSAKRIQKELADITLD---PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHC  123 (194)
T ss_dssp             HHHHHHHHHHHHHHHHS---CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred             cHHHHHHHHHHHHHHhC---CCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccc
Confidence            45789999999999985   578999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      ||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus       124 NV~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~  194 (194)
T 3bzh_A          124 NINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  194 (194)
T ss_dssp             TBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             eECC-CCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence            9995 9999999999999999999999999999999999999999999999999999999999999999984

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.1e-48  Score=304.38  Aligned_cols=151  Identities=32%  Similarity=0.548  Sum_probs=141.7

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      |++.+.+||++||++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus        27 ~~~~~~~RL~kEl~~l~~~---~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~  103 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMMS---GDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCY  103 (179)
T ss_dssp             ---CHHHHHHHHHHHHHHH---CCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             cChHHHHHHHHHHHHHHhC---CCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCc
Confidence            5677899999999999986   5789999999899999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP  156 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~  156 (199)
                      ||||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++|.++|++|+++++.++
T Consensus       104 HPNV~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~~  177 (179)
T 1i7k_A          104 HPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTSQ  177 (179)
T ss_dssp             STTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred             cCcccc-CCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhccc
Confidence            999995 99999999999999999999999999999999999999999999999 999999999999999998764

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.7e-47  Score=298.74  Aligned_cols=147  Identities=26%  Similarity=0.489  Sum_probs=139.3

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      |++.+.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        20 M~~~a~~RL~kEl~~l~~~---~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~   96 (169)
T 1yrv_A           20 MHGRAYLLLHRDFCDLKEN---NYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPF   96 (169)
T ss_dssp             GGCHHHHHHHHHHHHHHHH---CCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCC
T ss_pred             cChHHHHHHHHHHHHHHhC---CCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCc
Confidence            7788999999999999986   5779999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCch--hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487         81 HPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNV  151 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~  151 (199)
                      ||||+..+|.||+++|.  ++|+|+++|++||.+|++||.+|++++|+|.+||++|++|+++|.++ ++++++
T Consensus        97 HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~  168 (169)
T 1yrv_A           97 HPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR  168 (169)
T ss_dssp             CTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred             cCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence            99994469999999997  89999999999999999999999999999999999999999999998 887753

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=7.2e-47  Score=297.25  Aligned_cols=154  Identities=29%  Similarity=0.525  Sum_probs=140.7

Q ss_pred             CchHHHHHHHHHHHHHHhcC-CC-----CCc--ceEEEe-cCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCC
Q psy17487          1 MANIAAQRIKREFKEVIKSE-EV-----AKC--AIKLEL-IDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPP   71 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~-~~-----~~~--~i~v~~-~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP   71 (199)
                      |++.+.+||++|+++|+++. ..     +..  ++.+.+ .++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus         3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP   82 (172)
T 2y9m_A            3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP   82 (172)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred             CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence            88889999999999998832 11     222  466677 6779999999999999999999999999999999999999


Q ss_pred             cccccc-ccccCCccCCCCeeeccCch-hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhh-CHHHHHHHHHHH
Q psy17487         72 KVKFLT-KIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE-NPEMFTLTARHW  148 (199)
Q Consensus        72 ~v~f~t-~i~HPnV~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~-d~~~f~~~ak~~  148 (199)
                      +|+|.| +||||||+..+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++ |+++|.++||+|
T Consensus        83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~  162 (172)
T 2y9m_A           83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYF  162 (172)
T ss_dssp             EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999 99999997569999999997 899999999999999999999999999999999999999 999999999999


Q ss_pred             HHHhcC
Q psy17487        149 TNVYAG  154 (199)
Q Consensus       149 ~~~~a~  154 (199)
                      +++++.
T Consensus       163 ~~~~~~  168 (172)
T 2y9m_A          163 LAERER  168 (172)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            999864

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=4.1e-47  Score=294.09  Aligned_cols=148  Identities=30%  Similarity=0.545  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEE-EecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKL-ELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP   82 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v-~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   82 (199)
                      .+.+||++|+++|+++   ++.|+.+ .+.++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         4 ~~~~RL~kEl~~l~~~---~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   79 (155)
T 1wzv_A            4 MASMRVVKELEDLQKK---PPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHP   79 (155)
T ss_dssp             -CHHHHHHHHHHHHHS---CCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             hHHHHHHHHHHHHHhC---CCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccC
Confidence            4689999999999986   5679998 778889999999999 9999999999999999999999999999999999999


Q ss_pred             CccCCCCeeeccCc-hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487         83 NISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP  156 (199)
Q Consensus        83 nV~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~  156 (199)
                      ||+. +|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..+
T Consensus        80 nV~~-~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~  153 (155)
T 1wzv_A           80 NVDE-NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDR  153 (155)
T ss_dssp             TBCT-TCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred             cCCC-CCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            9995 999999999 899999999999999999999999999999999999999999999999999999999754

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=1.7e-47  Score=295.31  Aligned_cols=147  Identities=26%  Similarity=0.613  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      .|.+||++|+++|++.      |+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus         2 sa~~Rl~kEl~~l~~~------~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   75 (152)
T 2onu_A            2 TSLTRKQCDFTKLIMA------GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPN   75 (152)
T ss_dssp             -CCCHHHHTHHHHHHH------TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             hHHHHHHHHHHhcCcC------CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCc
Confidence            3679999999999773      6778888899999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCchhhhhhcccHHHHHHH-HHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487         84 ISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP  156 (199)
Q Consensus        84 V~~~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~  156 (199)
                      |+..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||...
T Consensus        76 i~~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~  149 (152)
T 2onu_A           76 VDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKD  149 (152)
T ss_dssp             BCTTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGG
T ss_pred             CcCcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCc
Confidence            99658999999999999999999999999 68999999999999999999999999999999999999999763

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-46  Score=297.03  Aligned_cols=145  Identities=30%  Similarity=0.667  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      .+.+||++|+++|++      .|+.+.+. +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus        25 ~a~~RL~kEl~~l~~------~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPN   97 (179)
T 2z5d_A           25 PGKRRMDTDVIKLIE------SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPN   97 (179)
T ss_dssp             HHHHHHHHHHHHHHH------SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHhcCc------CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCc
Confidence            478999999999975      35677776 57899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCchhhhhhcccHHHHHHH-HHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         84 ISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        84 V~~~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                      |+..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        98 V~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~  170 (179)
T 2z5d_A           98 IDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE  170 (179)
T ss_dssp             BCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred             CCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence            99559999999999999999999999999 9999999999999999999999999999999999999999975

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=4.2e-46  Score=291.73  Aligned_cols=147  Identities=33%  Similarity=0.618  Sum_probs=138.4

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEec-CCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELI-DDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~-~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      +.+.+||++|+++|+++   ++.|+++.+. ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus        13 s~~~~RL~kEl~~l~~~---~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   88 (167)
T 3fn1_B           13 SVRDKLLVKEVAELEAN---LPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWH   88 (167)
T ss_dssp             CHHHHHHHHHHHHHGGG---SCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCC
T ss_pred             hHHHHHHHHHHHHHHhC---CCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCccc
Confidence            46889999999999886   6779999865 56899999998 8999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCchh------hhhhcccHHHHHHHHHHHHhc-CCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         82 PNISSVTGAICLDILKD------QWAAAMTLRTVLLSLQALMAA-AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        82 PnV~~~~G~icl~~l~~------~W~p~~~i~~il~~i~~ll~~-p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      |||+ .+|.||+++|..      +|+|+++|.+||.+|++||.+ ||+++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        89 Pnv~-~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~  167 (167)
T 3fn1_B           89 PNIT-ETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR  167 (167)
T ss_dssp             SSBC-TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCC-CCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            9999 599999999964      799999999999999999999 69999999999999999999999999999999984

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=9.1e-46  Score=293.64  Aligned_cols=148  Identities=29%  Similarity=0.570  Sum_probs=138.8

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEE-ecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLE-LIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~-~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      +.+.+||++||++|+++   ++.|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus         6 ~~a~kRL~kEl~~l~~~---~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (183)
T 3rz3_A            6 PSSQKALLLELKGLQEE---PVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH   82 (183)
T ss_dssp             CHHHHHHHHHHHHHHHS---CCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred             hHHHHHHHHHHHHHHhC---CCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence            56899999999999986   57799998 566799999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCch-------------hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhh------CHHHHH
Q psy17487         82 PNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE------NPEMFT  142 (199)
Q Consensus        82 PnV~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~------d~~~f~  142 (199)
                      |||+. +|.||+++|.             ++|+|+++|++||.+|++||.+||+++|+|.+||++|++      |+++|.
T Consensus        83 PnV~~-~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~  161 (183)
T 3rz3_A           83 PNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYT  161 (183)
T ss_dssp             TTBCT-TSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHH
T ss_pred             CCCCC-CCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHH
Confidence            99995 9999999995             789999999999999999999999999999999999998      789999


Q ss_pred             HHHHHHHHHhcC
Q psy17487        143 LTARHWTNVYAG  154 (199)
Q Consensus       143 ~~ak~~~~~~a~  154 (199)
                      ++||++++++..
T Consensus       162 ~~v~~~v~~s~~  173 (183)
T 3rz3_A          162 DIIRKQVLGTKV  173 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988643

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=6.3e-46  Score=291.82  Aligned_cols=142  Identities=32%  Similarity=0.684  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecC-CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELID-DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      +.+.+||++||++|+++   ++.|+.+.+.+ +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus        16 ~~~~~rL~kEl~~l~~~---~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~H   92 (172)
T 2awf_A           16 PRGSLLLRRQLAELNKN---PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWH   92 (172)
T ss_dssp             CTTHHHHHHHHHHHHHS---CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred             HHHHHHHHHHHHHHHhC---CCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCcc
Confidence            56799999999999986   67899999876 699999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCch-------------hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHH-HHHHHHHH
Q psy17487         82 PNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPE-MFTLTARH  147 (199)
Q Consensus        82 PnV~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~-~f~~~ak~  147 (199)
                      |||+. +|.||+++|.             ++|+|+++|++||.+|++||.+|++++|+|.+||++|++|++ +|.++||+
T Consensus        93 PNV~~-~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~  171 (172)
T 2awf_A           93 PNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR  171 (172)
T ss_dssp             TTBCT-TCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC----------------------------
T ss_pred             CCCCC-CCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHh
Confidence            99995 8999999995             689999999999999999999999999999999999999999 99999997


Q ss_pred             H
Q psy17487        148 W  148 (199)
Q Consensus       148 ~  148 (199)
                      |
T Consensus       172 ~  172 (172)
T 2awf_A          172 C  172 (172)
T ss_dssp             -
T ss_pred             C
Confidence            5

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-45  Score=289.60  Aligned_cols=145  Identities=26%  Similarity=0.551  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      .+.+||++|+++|+++   + .++   +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus        12 ~~~~RL~~El~~l~~~---~-~~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN   84 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNS---T-RKV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPN   84 (171)
T ss_dssp             -CCHHHHHHHHHHHSS---S-SCE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred             cHHHHHHHHHHHHHhC---C-CCC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCccccc
Confidence            4679999999999885   2 343   34789999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCchhhhhhcccHHHHHHHH-HHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         84 ISSVTGAICLDILKDQWAAAMTLRTVLLSL-QALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        84 V~~~~G~icl~~l~~~W~p~~~i~~il~~i-~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                      |+..+|.||+++|.++|+|+++|.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        85 i~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~  157 (171)
T 1yf9_A           85 VDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP  157 (171)
T ss_dssp             BCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred             CcccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCh
Confidence            995599999999999999999999999997 799999999999999999999999999999999999999975

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=4.2e-46  Score=288.16  Aligned_cols=147  Identities=33%  Similarity=0.659  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          5 AAQRIKREFKEVIKSEEVAKCAIKLEL-IDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~~~~~~i~v~~-~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      |.+||++|+++|+++   ++.|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         3 a~~RL~kEl~~l~~~---~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (154)
T 1c4z_D            3 ASRRLMKELEEIRKC---GMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN   78 (154)
T ss_dssp             -CTTHHHHHTTCSSS---CCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             HHHHHHHHHHHHHhC---CCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCcccc
Confidence            679999999999875   557887554 5679999999998 99999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCch-hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487         84 ISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP  156 (199)
Q Consensus        84 V~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~  156 (199)
                      |+. +|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||..+
T Consensus        79 v~~-~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~  151 (154)
T 1c4z_D           79 IDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKR  151 (154)
T ss_dssp             BCT-TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC----
T ss_pred             CCC-CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccC
Confidence            995 9999999995 89999999999999999999999999999999999999999999999999999999864

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6.4e-45  Score=283.07  Aligned_cols=142  Identities=30%  Similarity=0.577  Sum_probs=134.2

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEE-ecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLE-LIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~-~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      +.+.+||++|+++| +    ++.|+.+. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus         5 ~~~~~RL~kEl~~l-~----~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (160)
T 1y8x_A            5 SAAQLRIQKDINEL-N----LPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH   78 (160)
T ss_dssp             CHHHHHHHHHHHTC-C----CCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             cHHHHHHHHHHHhc-C----CCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCcc
Confidence            45899999999999 2    45789988 6778999999988 9999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487         82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNV  151 (199)
Q Consensus        82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~  151 (199)
                      |||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|++.
T Consensus        79 Pnv~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~  147 (160)
T 1y8x_A           79 PNIDL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  147 (160)
T ss_dssp             TTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred             CcCCC-CCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence            99995 8999999999999999999999999999999999999999999999999999999999999864

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=2.3e-44  Score=315.96  Aligned_cols=152  Identities=41%  Similarity=0.788  Sum_probs=146.8

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP   82 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   82 (199)
                      +.|.+||++|+++|+++   ++.|+++.|.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||
T Consensus         2 s~a~~RL~kEl~~l~~~---~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   78 (399)
T 4ddg_A            2 AMALKRIHKELNDLARD---PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP   78 (399)
T ss_dssp             HHHHHHHHHHHHHHHHS---CCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCT
T ss_pred             cHHHHHHHHHHHHHHhC---CCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccc
Confidence            57899999999999986   678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCC
Q psy17487         83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSK  158 (199)
Q Consensus        83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~  158 (199)
                      ||+. +|.||+++|.++|+|+++|.+||.+|++||.+||+++|+|.+||++|++|+++|.++||+|+++||.+...
T Consensus        79 nv~~-~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~v~  153 (399)
T 4ddg_A           79 NINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGSA  153 (399)
T ss_dssp             TBCT-TCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCTTH
T ss_pred             ccCC-CCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccccc
Confidence            9995 99999999999999999999999999999999999999999999999999999999999999999998765

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-44  Score=285.56  Aligned_cols=143  Identities=29%  Similarity=0.554  Sum_probs=135.1

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEE-ecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLE-LIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~-~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      ++.+.+||++|+++|  +   ++.|+.+. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        24 ~~~~~~RL~kEl~~l--~---~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~   97 (180)
T 2nvu_C           24 ASAAQLRIQKDINEL--N---LPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY   97 (180)
T ss_dssp             CCHHHHHHHHHHHTC--C---CCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred             ccHHHHHHHHHHHhc--C---CCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCc
Confidence            356899999999999  2   45789988 7788999999998 999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNV  151 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~  151 (199)
                      ||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++.
T Consensus        98 HPNV~~-~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~  167 (180)
T 2nvu_C           98 HPNIDL-EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  167 (180)
T ss_dssp             BTTBCT-TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred             cCCCCC-CCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence            999995 9999999999999999999999999999999999999999999999999999999999999864

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=3.5e-44  Score=285.89  Aligned_cols=142  Identities=29%  Similarity=0.525  Sum_probs=134.2

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEE----ecCCCcc---eeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccc
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLE----LIDDNYT---ELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKF   75 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~----~~~dn~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f   75 (199)
                      +.|.+||++||++|+     .+.|+.+.    +.++|++   +|+++|. |++|||+||.|++.|.||++||++||+|+|
T Consensus        28 s~a~~RL~kEl~~l~-----~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f  101 (190)
T 3o2u_A           28 SAARIRLKRDLDSLD-----LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVC  101 (190)
T ss_dssp             CHHHHHHHHHHHTCC-----CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred             cHHHHHHHHHHHhcc-----CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence            568999999999996     35688887    7788999   9999997 888999999999999999999999999999


Q ss_pred             ccccccCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487         76 LTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNV  151 (199)
Q Consensus        76 ~t~i~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~  151 (199)
                      .|+||||||+. +|.||+++|.++|+|+++|++||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|++.
T Consensus       102 ~t~i~HPnV~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~  176 (190)
T 3o2u_A          102 LKKIFHPNIDL-KGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSG  176 (190)
T ss_dssp             CSCCCCTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBT
T ss_pred             ecCcccCCCCC-CCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHh
Confidence            99999999995 9999999999999999999999999999999999999999999999999999999999999943

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=2.6e-43  Score=275.88  Aligned_cols=145  Identities=22%  Similarity=0.470  Sum_probs=133.2

Q ss_pred             CchHHHHHHHHHHHHHHhcC-------C--CCCcceEEEecCCCcceeeEEEeCCCCCCCC--CcEEEEEEEeCCCCCCC
Q psy17487          1 MANIAAQRIKREFKEVIKSE-------E--VAKCAIKLELIDDNYTELKGEIAGPPDTPYE--GGNFVLEIKVPETYPFN   69 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~-------~--~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~YP~~   69 (199)
                      ||+.+.+||++|+++|+++.       .  .++.++.+.+.++|+++|+++|.||++|||+  ||.|++.|.||++||++
T Consensus         5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~   84 (167)
T 4ds2_A            5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE   84 (167)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred             ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence            88889999999999999863       0  1257899999999999999999999999999  99999999999999999


Q ss_pred             CCccccccccccCCccCCCCeeeccCchhhhhhcccHHHHHH-HHHHHHhc--CCCCCchhHHHHHHHhhCHHHHHHHHH
Q psy17487         70 PPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLL-SLQALMAA--AEPDDPQDAVVAKQYKENPEMFTLTAR  146 (199)
Q Consensus        70 pP~v~f~t~i~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~-~i~~ll~~--p~~~~p~n~eaa~~~~~d~~~f~~~ak  146 (199)
                      ||+|+|.|+||||||+ .+|.||+++|.++|+|+++++++|+ .|++|+..  |++++|+|.+||++|++|+++|.++||
T Consensus        85 pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr  163 (167)
T 4ds2_A           85 PPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR  163 (167)
T ss_dssp             CCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred             CCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence            9999999999999999 5999999999999999999999765 56677764  899999999999999999999999998

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=282.56  Aligned_cols=154  Identities=25%  Similarity=0.427  Sum_probs=139.5

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCC-CcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccc-
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVA-KCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTK-   78 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~-~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~-   78 (199)
                      ||+.+.+||++|+++|+++.+.. ..++.+.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+ 
T Consensus        73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~  152 (323)
T 3ceg_A           73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTG  152 (323)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCST
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccC
Confidence            56789999999999999863221 1366778888999999999999999999999999999999999999999999998 


Q ss_pred             ----cccCCccCCCCeeeccCch-------hhhhhcc-cHHHHHHHHHHHHh--cCCCCCchhHHH--HHHHhhCHHHHH
Q psy17487         79 ----IWHPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALMA--AAEPDDPQDAVV--AKQYKENPEMFT  142 (199)
Q Consensus        79 ----i~HPnV~~~~G~icl~~l~-------~~W~p~~-~i~~il~~i~~ll~--~p~~~~p~n~ea--a~~~~~d~~~f~  142 (199)
                          ||||||+ .+|.||+++|.       ++|+|++ +|.+||.+|++||.  +|++++|+|.++  +.+|.+|++.|.
T Consensus       153 g~~~ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~  231 (323)
T 3ceg_A          153 GHSVRFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYD  231 (323)
T ss_dssp             TTTCCCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHH
T ss_pred             CCcccccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHH
Confidence                9999999 59999999996       7999999 89999999999997  566799999987  678999999999


Q ss_pred             HHHHHHHHHhcCC
Q psy17487        143 LTARHWTNVYAGG  155 (199)
Q Consensus       143 ~~ak~~~~~~a~~  155 (199)
                      ++|+.|+++||..
T Consensus       232 ~~vr~~t~k~A~~  244 (323)
T 3ceg_A          232 GNIRQATVKWAML  244 (323)
T ss_dssp             HHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHhhH
Confidence            9999999999865

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-39  Score=243.64  Aligned_cols=118  Identities=27%  Similarity=0.516  Sum_probs=104.2

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc-
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI-   79 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-   79 (199)
                      |+ .|.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ 
T Consensus         4 m~-~a~~RL~kEl~~l~~~---~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~   79 (125)
T 2fo3_A            4 MG-NANYRIQKELHNFLNN---PPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPP   79 (125)
T ss_dssp             ------CHHHHHHHHHHHS---CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCC
T ss_pred             ch-HHHHHHHHHHHHHHhC---CCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCC
Confidence            54 4789999999999986   567999999889999999999999999999999999999999999999999999997 


Q ss_pred             ccCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCC
Q psy17487         80 WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD  123 (199)
Q Consensus        80 ~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~  123 (199)
                      |||||+. +|.||+++|.++|+|+++|++||.+|++||.+|+.+
T Consensus        80 ~HPnv~~-~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~  122 (125)
T 2fo3_A           80 KHTHVYS-NGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK  122 (125)
T ss_dssp             CBTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred             CCCcCCC-CCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence            9999994 999999999999999999999999999999999864

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=3.4e-40  Score=255.20  Aligned_cols=131  Identities=27%  Similarity=0.411  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecC-C--CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELID-D--NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI   79 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-d--n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   79 (199)
                      ..+.+||++|+++|+++.  ++.|+.+.+.+ +  |++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|
T Consensus        20 ~~~~~RL~kEl~~l~~~~--~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i   97 (156)
T 2q0v_A           20 VPRSFRLLDELERGQKGN--VSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI   97 (156)
T ss_dssp             CCHHHHHHHHHHHHHCC---CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred             chHHHHHHHHHHHHHhCC--CCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccc
Confidence            357899999999998752  45788888854 2  699999999999999999999999999999999999999999999


Q ss_pred             ccCCccCCCCee---eccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhC
Q psy17487         80 WHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKEN  137 (199)
Q Consensus        80 ~HPnV~~~~G~i---cl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d  137 (199)
                      |||||+. +|.|   |+++|. +|+|+++|++||.+|++||.+|++++|+|.+||.+|++|
T Consensus        98 ~HPNV~~-~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n  156 (156)
T 2q0v_A           98 EMSCVDN-CGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN  156 (156)
T ss_dssp             CCTTBCT-TSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred             ccCCCcc-CCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence            9999995 8999   888886 599999999999999999999999999999999998765

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=2.1e-39  Score=251.42  Aligned_cols=127  Identities=28%  Similarity=0.418  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcc-eEEEec-CCC--cceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccc
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCA-IKLELI-DDN--YTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTK   78 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~-i~v~~~-~dn--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   78 (199)
                      ..+.+||++|+++|+++   ++.| +.+.+. ++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus        24 ~p~~~RL~kEl~~l~~~---~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~  100 (160)
T 2a4d_A           24 VPRNFRLLEELEEGQKG---VGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK  100 (160)
T ss_dssp             HHHHHHHHHHHHHHHSC---CTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             chHHHHHHHHHHHHHhC---CCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence            45789999999999885   3455 777764 344  8999999999999999999999999999999999999999999


Q ss_pred             cccCCccCCCCeeeccCch--hhhhhcccHHHHHHHHHHHHh-cCCCCCchhHHHHH
Q psy17487         79 IWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMA-AAEPDDPQDAVVAK  132 (199)
Q Consensus        79 i~HPnV~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~-~p~~~~p~n~eaa~  132 (199)
                      ||||||+..+|.||+++|.  ++|+|+++|++||.+|++||. .||+++|+|.|||.
T Consensus       101 i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa~  157 (160)
T 2a4d_A          101 INMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQC  157 (160)
T ss_dssp             CCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTCB
T ss_pred             ceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhcc
Confidence            9999999669999999996  899999999999999999996 59999999999873

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=3e-40  Score=250.95  Aligned_cols=131  Identities=29%  Similarity=0.463  Sum_probs=115.3

Q ss_pred             Cc-hHHHHHHHHHHHHHHhcCCCCCcceEEEecC-C--CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccc
Q psy17487          1 MA-NIAAQRIKREFKEVIKSEEVAKCAIKLELID-D--NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFL   76 (199)
Q Consensus         1 Ms-~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-d--n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   76 (199)
                      |+ ..+.+||++|+++|+++.  ++.|+.+.+.+ +  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus         2 m~~~~~~~RL~kEl~~l~~~~--~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   79 (138)
T 1jat_B            2 MSKVPRNFRLLEELEKGEKGF--GPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFI   79 (138)
T ss_dssp             -CCCCHHHHHHHHHHHHHC------CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             cchHHHHHHHHHHHHHHHhcC--CCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEE
Confidence            66 346799999999998752  45788888854 3  599999999999999999999999999999999999999999


Q ss_pred             cccccCCccCCCCee--eccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q psy17487         77 TKIWHPNISSVTGAI--CLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY  134 (199)
Q Consensus        77 t~i~HPnV~~~~G~i--cl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~  134 (199)
                      |+||||||+..+|.|  |+++|. +|+|+++|++||.+|++||.+|++++|+|.+||.+|
T Consensus        80 t~i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B           80 SKINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             BCCCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             cccccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence            999999999655999  899885 899999999999999999999999999999988654

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.6e-38  Score=240.82  Aligned_cols=115  Identities=26%  Similarity=0.517  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc-ccC
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI-WHP   82 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HP   82 (199)
                      .+.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||
T Consensus        20 ~~~~RL~kEl~~l~~~---~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP   96 (136)
T 2h2y_A           20 NANYRIQKELNNFLKN---PPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHT   96 (136)
T ss_dssp             SHHHHHHHHHHHHHHS---CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCT
T ss_pred             HHHHHHHHHHHHHHhC---CCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCC
Confidence            5789999999999986   567999999889999999999999999999999999999999999999999999997 999


Q ss_pred             CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCC
Q psy17487         83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP  122 (199)
Q Consensus        83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~  122 (199)
                      ||+. +|.||+++|.++|+|+++|.+||.+|++||.+|+.
T Consensus        97 nv~~-~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           97 HVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             TBCT-TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             cCCC-CCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            9995 99999999999999999999999999999999874

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=9.9e-39  Score=250.13  Aligned_cols=125  Identities=29%  Similarity=0.442  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcc-eEEEec-CCC--cceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCA-IKLELI-DDN--YTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI   79 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~-i~v~~~-~dn--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   79 (199)
                      .+.+||++|+++|+++   ++.| +.+.+. ++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus        35 p~~~RL~kEl~~l~~~---~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i  111 (170)
T 2hlw_A           35 PRNFRLLEELEEGQKG---VGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI  111 (170)
T ss_dssp             CHHHHHHHHHHHHHHC---CGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCC
T ss_pred             HHHHHHHHHHHHHHhC---CCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccc
Confidence            4789999999999986   4556 667763 444  99999999999999999999999999999999999999999999


Q ss_pred             ccCCccCCCCeeeccCch--hhhhhcccHHHHHHHHHHHHhc-CCCCCchhHHHH
Q psy17487         80 WHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAA-AEPDDPQDAVVA  131 (199)
Q Consensus        80 ~HPnV~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~-p~~~~p~n~eaa  131 (199)
                      |||||+..+|.||+++|.  ++|+|+++|++||.+|++||.+ ||+++|+|.|||
T Consensus       112 ~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  166 (170)
T 2hlw_A          112 NMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  166 (170)
T ss_dssp             CCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred             ccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence            999999569999999996  8999999999999999999985 999999999987

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.3e-38  Score=238.27  Aligned_cols=113  Identities=31%  Similarity=0.654  Sum_probs=104.6

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEE--ecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLE--LIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTK   78 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~--~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   78 (199)
                      |++. .+||++|+++|+++   ++.|+.+.  +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus        20 Ms~~-~~RL~kEl~~l~~~---~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~   95 (136)
T 2a7l_A           20 MASM-QKRLQKELLALQND---PPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE   95 (136)
T ss_dssp             GTTS-CHHHHHHHHHHHHS---CCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred             ccHH-HHHHHHHHHHHHhC---CCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC
Confidence            5553 49999999999986   56788865  778899999999999999999999999999999999999999999999


Q ss_pred             cc--cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHh
Q psy17487         79 IW--HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA  118 (199)
Q Consensus        79 i~--HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~  118 (199)
                      +|  ||||+. +|.||+++|.++|+|+++|++||.+|++||.
T Consensus        96 i~~~HPNV~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A           96 NIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             CCCCBTTBCT-TCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             CcCCCccCCC-CCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence            99  999995 9999999999999999999999999999974

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=100.00  E-value=1.4e-37  Score=247.00  Aligned_cols=142  Identities=20%  Similarity=0.469  Sum_probs=122.2

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCC-CCCCCCC-----------cEEEEEEEeCCCCCC
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGP-PDTPYEG-----------GNFVLEIKVPETYPF   68 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~fp~~YP~   68 (199)
                      |+..+.+||++||++|+++....+.++.+.+.++|+++|+++|.|| ++|||+|           |.|+++|.||++||+
T Consensus        24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~  103 (186)
T 1zuo_A           24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF  103 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCC
Confidence            6788999999999999885210156899999999999999999997 8999998           899999999999999


Q ss_pred             CCCccccccccccC-CccCCCCeeeccCch-hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHH
Q psy17487         69 NPPKVKFLTKIWHP-NISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTAR  146 (199)
Q Consensus        69 ~pP~v~f~t~i~HP-nV~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak  146 (199)
                      +||+|+|.|++||| ||+ .+|.||+++|. ++|+|+++|++||.+|++||.+|++..        .|+.++.+|.+.++
T Consensus       104 ~PP~V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~  174 (186)
T 1zuo_A          104 DPPFVRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARA  174 (186)
T ss_dssp             SCCEEEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHH
T ss_pred             CCCeEEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHH
Confidence            99999999999999 699 59999999995 799999999999999999999987633        24445666766666


Q ss_pred             HHHHH
Q psy17487        147 HWTNV  151 (199)
Q Consensus       147 ~~~~~  151 (199)
                      ..+.+
T Consensus       175 ~~~~~  179 (186)
T 1zuo_A          175 QQSYN  179 (186)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-35  Score=236.29  Aligned_cols=116  Identities=29%  Similarity=0.543  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP   82 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   82 (199)
                      +.+.+||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+  ||
T Consensus        13 ~~a~~RL~kEl~~l~~~---~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~   87 (187)
T 2f4w_A           13 TTATQRLKQDYLRIKKD---PVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NG   87 (187)
T ss_dssp             -CHHHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CS
T ss_pred             cHHHHHHHHHHHHHHhC---CCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cc
Confidence            46889999999999986   56799999999999999999999999999999999999999999999999999999  99


Q ss_pred             CccCCCCeeeccCc---hhhhhhcccHHHHHHHHHHHHhcCCCCC
Q psy17487         83 NISSVTGAICLDIL---KDQWAAAMTLRTVLLSLQALMAAAEPDD  124 (199)
Q Consensus        83 nV~~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~p~~~~  124 (199)
                      |++. +|.||+++|   .++|+|+++|.+||.+|++||.+|+++.
T Consensus        88 ~~~~-~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~  131 (187)
T 2f4w_A           88 RFKC-NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL  131 (187)
T ss_dssp             SBCT-TSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred             eecc-CCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence            9995 999999999   6899999999999999999999999864

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.94  E-value=1.2e-27  Score=183.70  Aligned_cols=113  Identities=20%  Similarity=0.301  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCc----------EEEEEEEeCCCCCCCCCcccc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG----------NFVLEIKVPETYPFNPPKVKF   75 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f   75 (199)
                      .+||++||+.|.+.         +.+..+|+..|.+.+.||.+|+|+||          .|.++|.||++||++||+|+|
T Consensus        34 ~~RL~eE~k~L~k~---------v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F  104 (172)
T 2z6o_A           34 VQRLKEEYQSLIRY---------VENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAV  104 (172)
T ss_dssp             HHHHHHHHHHHHHH---------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHH---------hccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeee
Confidence            89999999999883         34566799999999999999999999          999999999999999999999


Q ss_pred             ccc-cccCCccCCCCeeeccCc-hhhhh---hcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhh
Q psy17487         76 LTK-IWHPNISSVTGAICLDIL-KDQWA---AAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE  136 (199)
Q Consensus        76 ~t~-i~HPnV~~~~G~icl~~l-~~~W~---p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~  136 (199)
                      .+. +|||||+. +|+|||++| ...|+   |+++|.++|.-        -...++..|+..+...
T Consensus       105 ~~~~~~hpnmY~-~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~~  161 (172)
T 2z6o_A          105 PELDGKTAKMYR-GGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQK  161 (172)
T ss_dssp             GGGTTTCSSBCT-TSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCC-CCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHHc
Confidence            998 99999995 999999999 54455   99999999843        2334566666666543

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.80  E-value=1.2e-19  Score=140.30  Aligned_cols=116  Identities=22%  Similarity=0.314  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcE---EEEEEEeCCCCCCCCCccccccc-----
Q psy17487          7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGN---FVLEIKVPETYPFNPPKVKFLTK-----   78 (199)
Q Consensus         7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~-----   78 (199)
                      +|..+|..++.+.-........+...+|....+-+.+.|.-.++|+|+.   |.+.|.||.+||++||.|.|.++     
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~  110 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN  110 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence            5677888877664222223344455667666777777777779999998   88999999999999999988651     


Q ss_pred             -----cc-cCCccCCCCeeeccCchhhhhh-cccHHHHHHHHHHHHhcCCCCC
Q psy17487         79 -----IW-HPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALMAAAEPDD  124 (199)
Q Consensus        79 -----i~-HPnV~~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~p~~~~  124 (199)
                           |+ ||||| .+|+||+++| .+|+| +.++.++|.+|+++|.+|+++.
T Consensus       111 ~~~~~I~~hpnVD-~~G~I~lpyL-~~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          111 TISSSLPIQEYID-SNGWIALPIL-HAWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             TSCTTSTHHHHBC-TTSBBCCGGG-GSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             ccccccCCCCCCC-CCCcEeCccc-ccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence                 77 99999 4999999999 57999 6899999999999999999875

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.74  E-value=1.1e-18  Score=131.03  Aligned_cols=95  Identities=23%  Similarity=0.403  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCc----------EEEEEEEeCCCCCCCCCcccc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG----------NFVLEIKVPETYPFNPPKVKF   75 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f   75 (199)
                      .+||..||..|.+.         |....++-..|...+.|+.||+|.|+          .|.+++.||.+||.+||.|+|
T Consensus        36 ~~RlkeEy~alI~y---------v~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F  106 (168)
T 3kpa_A           36 TARLKEEYASLITY---------VEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL  106 (168)
T ss_dssp             HHHHHHHHHHHHHH---------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHH---------HHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeec
Confidence            68999999999763         22333445689999999999999999          999999999999999999999


Q ss_pred             ccc-cccCCccCCCCeeeccCc-hhhhh---hcccHHHHH
Q psy17487         76 LTK-IWHPNISSVTGAICLDIL-KDQWA---AAMTLRTVL  110 (199)
Q Consensus        76 ~t~-i~HPnV~~~~G~icl~~l-~~~W~---p~~~i~~il  110 (199)
                      .+. .+|||++. +|+|||+++ ..-|+   |.++|.+.|
T Consensus       107 p~ldgkt~kmYr-~GkICLdIhwkPlW~~n~P~fGiahal  145 (168)
T 3kpa_A          107 PELEGKTVKMYR-GGKICMTTHFFPLWARNVPYFGISHVL  145 (168)
T ss_dssp             GGGTTTCSSEET-TTEECCCTTHHHHHHHTTTTCCHHHHH
T ss_pred             ccccCcCccccC-CCcEEeccccchhhHhcCCchhHHHHH
Confidence            995 89999995 999999998 34443   445677665

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.49  E-value=6.5e-14  Score=106.33  Aligned_cols=80  Identities=24%  Similarity=0.532  Sum_probs=71.0

Q ss_pred             CCcceeeEEEeCCCCCCCCCcEEE--EEEEeCCCCCCCCCccccccc------cccCCccCCCCeeeccCchhhhhh-cc
Q psy17487         34 DNYTELKGEIAGPPDTPYEGGNFV--LEIKVPETYPFNPPKVKFLTK------IWHPNISSVTGAICLDILKDQWAA-AM  104 (199)
Q Consensus        34 dn~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~------i~HPnV~~~~G~icl~~l~~~W~p-~~  104 (199)
                      .++..|.++|.    .+|+|+.|.  +.|.||.+||++||.| |.++      ..|||||. +|+||++.|. +|++ ..
T Consensus        51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~-~G~i~lpyL~-~W~~~~s  123 (146)
T 3obq_A           51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDA-NGKIYLPYLH-EWKHPQS  123 (146)
T ss_dssp             CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCT-TCBBCCHHHH-TCCTTTC
T ss_pred             heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCC-CCCEeccccc-ccCCCCC
Confidence            48899999997    679999998  5899999999999999 6665      48999995 9999999994 5997 89


Q ss_pred             cHHHHHHHHHHHHhcC
Q psy17487        105 TLRTVLLSLQALMAAA  120 (199)
Q Consensus       105 ~i~~il~~i~~ll~~p  120 (199)
                      ++.+++..++++|.+.
T Consensus       124 nL~~ll~~l~~~F~~e  139 (146)
T 3obq_A          124 DLLGLIQVMIVVFGDE  139 (146)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhhC
Confidence            9999999999999874

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=99.21  E-value=7.7e-12  Score=89.87  Aligned_cols=80  Identities=21%  Similarity=0.234  Sum_probs=36.9

Q ss_pred             CCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCC---CcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHH
Q psy17487        120 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSK---NPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATE  195 (199)
Q Consensus       120 p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~---~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e  195 (199)
                      .....|.+.++|++|.++++.|..+|+.|+.-+|.++..   ...++..+++|.+||| +.+.++.||+..+|+++.|+|
T Consensus        21 ~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~~~~~~~~e~~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe  100 (108)
T 2cwb_A           21 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALE  100 (108)
T ss_dssp             ------------------------------------------CCTTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred             cccCCchhHHHHHHHHhchhccccccccccccCcCCCCCCCcccchHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence            445669999999999999999999999999888876544   3568999999999999 557999999999999999999


Q ss_pred             hhhC
Q psy17487        196 AIFT  199 (199)
Q Consensus       196 ~~~~  199 (199)
                      .||+
T Consensus       101 ~L~~  104 (108)
T 2cwb_A          101 LIFA  104 (108)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9983

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.53  E-value=8.5e-08  Score=59.31  Aligned_cols=42  Identities=19%  Similarity=0.303  Sum_probs=38.9

Q ss_pred             CCcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        158 KNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      .+++++..+++|++|||+++.|+.||+.++|+++.|+|.|++
T Consensus         4 ~~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~   45 (49)
T 1ify_A            4 TGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT   45 (49)
T ss_dssp             CSHHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            356788999999999999999999999999999999999974

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=98.47  E-value=3.2e-07  Score=57.38  Aligned_cols=42  Identities=19%  Similarity=0.301  Sum_probs=39.0

Q ss_pred             CCcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        158 KNPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       158 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      .+..++..+++|.+||| +++.++.||+.++|+++.|+|.||+
T Consensus         8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~   50 (52)
T 2jy5_A            8 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG   50 (52)
T ss_dssp             TTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            36678999999999999 9999999999999999999999985

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=98.38  E-value=5.5e-07  Score=52.96  Aligned_cols=39  Identities=33%  Similarity=0.469  Sum_probs=36.1

Q ss_pred             cchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      ++++..|++|++|||+.+.|+.||+.++|+++.|++.|+
T Consensus         2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence            567889999999999999999999999999999999885

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=98.35  E-value=6.5e-07  Score=59.81  Aligned_cols=41  Identities=27%  Similarity=0.354  Sum_probs=38.8

Q ss_pred             CcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      .++++..|++|++|||+++.|+.||+.++|+++.|+|.||+
T Consensus        26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~   66 (73)
T 1vg5_A           26 VAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS   66 (73)
T ss_dssp             SCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             CcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            56789999999999999999999999999999999999985

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=98.35  E-value=3.3e-07  Score=57.53  Aligned_cols=41  Identities=20%  Similarity=0.311  Sum_probs=38.0

Q ss_pred             CcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        159 NPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +..++.++++|.+||| +.+.++.||+.++|+++.|+|.||+
T Consensus         8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~   49 (53)
T 2knz_A            8 EVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLG   49 (53)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            5568899999999999 9999999999999999999999973

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=98.28  E-value=1.1e-06  Score=53.49  Aligned_cols=40  Identities=18%  Similarity=0.333  Sum_probs=36.0

Q ss_pred             cchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        160 PDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       160 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ..++..+++|.+||| +..+++.||+..+|+++.|+|.||+
T Consensus         5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~   45 (46)
T 2bwb_A            5 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   45 (46)
T ss_dssp             HHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            457889999999999 5677899999999999999999985

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=98.25  E-value=1.3e-06  Score=52.25  Aligned_cols=37  Identities=32%  Similarity=0.591  Sum_probs=35.0

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +..|++|.+|||+.+.|+.||+.++|+++.|++.||+
T Consensus         5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~   41 (43)
T 2g3q_A            5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence            5789999999999999999999999999999999985

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.19  E-value=1.9e-06  Score=54.22  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=36.0

Q ss_pred             CcchHHHHHHHHhcCCC-hHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        159 NPDFDSKIQRLTDMGVM-SHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ...++..+++|.+|||. ..+++.||...+|+++.|+|.||+
T Consensus         6 ~~~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~   47 (54)
T 2dah_A            6 SGHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ   47 (54)
T ss_dssp             CCSSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            45689999999999994 556799999999999999999983

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.12  E-value=3.1e-06  Score=56.59  Aligned_cols=41  Identities=15%  Similarity=0.280  Sum_probs=37.5

Q ss_pred             CcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        159 NPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ...++.++++|.+||| ++++++.||...+|+++.|+|.||+
T Consensus        26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~   67 (74)
T 1vej_A           26 EGRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG   67 (74)
T ss_dssp             TTTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            5568999999999999 6788899999999999999999985

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=98.09  E-value=2.6e-06  Score=54.37  Aligned_cols=41  Identities=17%  Similarity=0.332  Sum_probs=36.4

Q ss_pred             CcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        159 NPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ...++..+++|.+||| +.++++.||+..+|+++.|+|.||+
T Consensus        14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~   55 (58)
T 1wr1_B           14 EERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   55 (58)
T ss_dssp             HHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            3457889999999999 5778899999999999999999984

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.07  E-value=3.3e-06  Score=57.66  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=36.0

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      .+..|++|++|||+++.|+.||+..+|+++.|+|.||+
T Consensus        29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~s   66 (83)
T 1veg_A           29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAH   66 (83)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            57899999999999999999999999999999999974

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.04  E-value=4.5e-06  Score=54.17  Aligned_cols=38  Identities=26%  Similarity=0.375  Sum_probs=35.5

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      -+..|++|++|||+.+.|+.||+.++|+++.|+|.||+
T Consensus         9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~   46 (63)
T 1wji_A            9 DEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT   46 (63)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            46789999999999999999999999999999999973

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=97.97  E-value=6.6e-06  Score=54.95  Aligned_cols=38  Identities=29%  Similarity=0.391  Sum_probs=35.7

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      -+.+|++|++|||+++.|+.||+.++|+++.|+|.||+
T Consensus        29 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~   66 (73)
T 1wiv_A           29 DQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN   66 (73)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            47789999999999999999999999999999999974

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.90  E-value=1.3e-05  Score=52.01  Aligned_cols=39  Identities=31%  Similarity=0.368  Sum_probs=36.0

Q ss_pred             chHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        161 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ..+..+++|++|||+.+.|+.||+.++|++++|+|.||+
T Consensus         8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~   46 (63)
T 2dak_A            8 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS   46 (63)
T ss_dssp             CCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            357889999999999999999999999999999999873

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=97.86  E-value=7.2e-06  Score=50.05  Aligned_cols=40  Identities=15%  Similarity=0.111  Sum_probs=36.2

Q ss_pred             cchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ++.+..|++|++|||+.+.|+.||..++|+.+.|.+.||+
T Consensus         2 ~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~   41 (47)
T 1dv0_A            2 SQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS   41 (47)
T ss_dssp             -CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            3457789999999999999999999999999999999985

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.85  E-value=1.7e-05  Score=56.18  Aligned_cols=41  Identities=27%  Similarity=0.551  Sum_probs=38.8

Q ss_pred             CcchHHHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        159 NPDFDSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       159 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +++++..|+.+++| |++.+.|+.||..++||+..|++.||.
T Consensus        36 d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lle   77 (104)
T 1wj7_A           36 DADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLE   77 (104)
T ss_dssp             CHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            57899999999999 999999999999999999999999984

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.79  E-value=3.7e-05  Score=46.74  Aligned_cols=37  Identities=35%  Similarity=0.448  Sum_probs=34.5

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      .+..+++|++|||+.+.|+.||+.++ +++.|+|.|++
T Consensus         9 ~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~   45 (47)
T 2ekk_A            9 NQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLT   45 (47)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence            47889999999999999999999998 99999999984

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.79  E-value=4.8e-05  Score=47.51  Aligned_cols=41  Identities=12%  Similarity=0.169  Sum_probs=37.1

Q ss_pred             CCcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        158 KNPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       158 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      +++.+..++.+|.+||| +...-+.||+..+|++++|+++|+
T Consensus         5 ~ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll   46 (54)
T 2cp8_A            5 SSGQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELL   46 (54)
T ss_dssp             SCTTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence            35567889999999999 888888999999999999999997

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.78  E-value=2.9e-05  Score=53.27  Aligned_cols=37  Identities=35%  Similarity=0.478  Sum_probs=35.1

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +..|++|++|||+++.|+.||+..+|++++|+|.||+
T Consensus        22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~   58 (85)
T 2dkl_A           22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLE   58 (85)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            7789999999999999999999999999999999984

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.70  E-value=4.2e-05  Score=49.66  Aligned_cols=48  Identities=19%  Similarity=0.176  Sum_probs=39.5

Q ss_pred             HHHHHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHhhcCC-chHHHHHhhhC
Q psy17487        147 HWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIFT  199 (199)
Q Consensus       147 ~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~e~~~~  199 (199)
                      .|+..|+..+     -+..|++|++|||+.+.|+.||+.++| +++.|+|.||+
T Consensus         9 ~~t~~ya~~~-----~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~   57 (64)
T 2cpw_A            9 NRQQRPGTIK-----HGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS   57 (64)
T ss_dssp             CSCCSSCSSS-----CCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             hhhhcccccC-----CHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            3555555541     245799999999999999999999999 99999999984

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.61  E-value=6.5e-05  Score=50.18  Aligned_cols=38  Identities=24%  Similarity=0.192  Sum_probs=34.7

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHhhcC-CchHHHHHhhhC
Q psy17487        162 FDSKIQRLTDMGVMSHDARVALSTYN-WELERATEAIFT  199 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~e~~~~  199 (199)
                      -+..|++|++|||+++.|+.||+.++ |++++|+|.||+
T Consensus         9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~   47 (74)
T 2dag_A            9 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMS   47 (74)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence            36789999999999999999999999 589999999873

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.59  E-value=7.7e-05  Score=50.93  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=35.3

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      -+..+++|++|||+.+.|+.||..++|+++.|++.||+
T Consensus        29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~   66 (83)
T 2dai_A           29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIE   66 (83)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            46789999999999999999999999999999999873

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.50  E-value=0.0001  Score=47.80  Aligned_cols=36  Identities=25%  Similarity=0.289  Sum_probs=33.5

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhc-CCchHHHHHhhh
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTY-NWELERATEAIF  198 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~e~~~  198 (199)
                      +..|++|++|||+...|+.||+.+ +|++++|++.||
T Consensus        10 ~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl   46 (64)
T 1whc_A           10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLM   46 (64)
T ss_dssp             CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            457899999999999999999999 699999999987

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=97.44  E-value=0.00012  Score=50.00  Aligned_cols=38  Identities=16%  Similarity=0.185  Sum_probs=34.9

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHhhcC-CchHHHHHhhhC
Q psy17487        162 FDSKIQRLTDMGVMSHDARVALSTYN-WELERATEAIFT  199 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~e~~~~  199 (199)
                      .+..|++|++|||+++.|+.||...+ |+++.|++.||+
T Consensus        29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~   67 (84)
T 1vek_A           29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLS   67 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            47889999999999999999999995 999999999873

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.42  E-value=0.00035  Score=43.12  Aligned_cols=41  Identities=24%  Similarity=0.283  Sum_probs=36.0

Q ss_pred             CCcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        158 KNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      ..+..+..|.+|+++||+.++|+.||...+++++.|..-|+
T Consensus         5 ~~~~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~   45 (53)
T 2d9s_A            5 SSGQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILR   45 (53)
T ss_dssp             CCSCSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CccchHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34556788999999999999999999999999999986654

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.37  E-value=0.00019  Score=46.88  Aligned_cols=41  Identities=17%  Similarity=0.218  Sum_probs=35.0

Q ss_pred             CcchHHHHHHHHhcCCCh-HHHHHHHhhcCCchHHHHHhhhC
Q psy17487        159 NPDFDSKIQRLTDMGVMS-HDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +..+...+.+|.+|||.. .+++.||...+.++++|+|.||+
T Consensus        16 e~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~   57 (67)
T 2dna_A           16 EVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKS   57 (67)
T ss_dssp             HHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            335788999999999854 45589999999999999999983

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.37  E-value=0.00014  Score=47.19  Aligned_cols=36  Identities=28%  Similarity=0.237  Sum_probs=33.2

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcCC-chHHHHHhhh
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIF  198 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~e~~~  198 (199)
                      +..+++|++|||+.+.|+.||..+++ ++++|++.||
T Consensus        10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~   46 (64)
T 2crn_A           10 PSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLH   46 (64)
T ss_dssp             CSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45789999999999999999999976 9999999987

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.31  E-value=0.00018  Score=45.86  Aligned_cols=41  Identities=15%  Similarity=0.225  Sum_probs=37.3

Q ss_pred             CcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      .+.....|..+++|||..+.|+.||...+-++|+|++-||+
T Consensus        16 s~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFS   56 (63)
T 1wgn_A           16 SPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA   56 (63)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            34567889999999999999999999999999999999984

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=97.12  E-value=0.00048  Score=50.49  Aligned_cols=39  Identities=33%  Similarity=0.377  Sum_probs=36.3

Q ss_pred             chHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        161 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ..+..+++|++|||+.+.|+.||..++|+++.|+|.|++
T Consensus        77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~  115 (126)
T 2lbc_A           77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFS  115 (126)
T ss_dssp             CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            357889999999999999999999999999999999985

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=97.07  E-value=0.00021  Score=61.60  Aligned_cols=75  Identities=16%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             chhHHHHHHHhhCHHHHHHHHHHHHHHhc-C-------------CC-----CCCcchHHHHHHHHhcCCChHHHHHHHhh
Q psy17487        125 PQDAVVAKQYKENPEMFTLTARHWTNVYA-G-------------GP-----SKNPDFDSKIQRLTDMGVMSHDARVALST  185 (199)
Q Consensus       125 p~n~eaa~~~~~d~~~f~~~ak~~~~~~a-~-------------~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  185 (199)
                      -.|++.++++++|.+.|.++..+.+..-. +             ..     ...++....|.+|++|||+.+.|+.||..
T Consensus       269 ~~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a  348 (368)
T 1oqy_A          269 QENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFA  348 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSS
T ss_pred             hhCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHH
Confidence            35889999999999999999865321100 0             00     11356788999999999999999999999


Q ss_pred             cCCchHHHHHhhhC
Q psy17487        186 YNWELERATEAIFT  199 (199)
Q Consensus       186 ~~~~~~~~~e~~~~  199 (199)
                      ++|+.+.|.+.||+
T Consensus       349 ~~~n~e~A~~~L~~  362 (368)
T 1oqy_A          349 CEKNENLAANFLLS  362 (368)
T ss_dssp             SSSCSSHHHHHHHH
T ss_pred             cCCCHHHHHHHHhh
Confidence            99999999999984

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=97.05  E-value=0.0011  Score=40.64  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=33.3

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      .+..|.+|+++||+.++|+.||...+++++.|.--|+
T Consensus        11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLl   47 (52)
T 2ooa_A           11 VDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILR   47 (52)
T ss_dssp             CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence            4589999999999999999999999999999986554

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=96.83  E-value=0.0012  Score=47.99  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=35.5

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +.+.+..|.+|||+...|+.||..++.+.+.|+|.|++
T Consensus        76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~  113 (118)
T 4ae4_A           76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA  113 (118)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            56789999999999999999999999999999999974

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=96.74  E-value=0.0012  Score=56.84  Aligned_cols=42  Identities=19%  Similarity=0.303  Sum_probs=39.1

Q ss_pred             CCcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        158 KNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ...+++..|.+|.+|||+++.|+.||+..+|+.++|+|+|++
T Consensus       164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~  205 (368)
T 1oqy_A          164 TGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT  205 (368)
T ss_dssp             CTTTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             CCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            356789999999999999999999999999999999999985

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=96.69  E-value=0.004  Score=37.10  Aligned_cols=39  Identities=23%  Similarity=0.264  Sum_probs=35.4

Q ss_pred             cchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      ++.+..+..|++|||+.++++.||....-+++.|..-|+
T Consensus         2 ~~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~   40 (46)
T 2oo9_A            2 SQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR   40 (46)
T ss_dssp             CHHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence            457889999999999999999999999999999987664

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=96.31  E-value=0.0069  Score=37.45  Aligned_cols=40  Identities=25%  Similarity=0.325  Sum_probs=35.4

Q ss_pred             CcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      .+..+..|.+|.+|||+.++++.||....-|++.|+--|+
T Consensus         4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLl   43 (56)
T 2juj_A            4 SPQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR   43 (56)
T ss_dssp             CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred             CCCChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHH
Confidence            3456889999999999999999999999999999986654

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.79  E-value=0.03  Score=40.45  Aligned_cols=67  Identities=12%  Similarity=0.200  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLT   77 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   77 (199)
                      ..+...|+..|..-   .+..+.+  ..+....+.+.|....+..-..-.+.+.|.||++||..||.+.+.+
T Consensus        12 ~e~q~~EleaL~sI---y~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           12 GEEQRNELEALESI---YPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHH---CSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             HHHHHHHHHHHHHH---ccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            56677899888652   2333333  2223355666665222222233478899999999999999987654

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=95.77  E-value=0.014  Score=42.13  Aligned_cols=40  Identities=15%  Similarity=0.234  Sum_probs=36.5

Q ss_pred             CcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      .+.-...+..+++|||....|+.||...|.++++|+|.|+
T Consensus         5 ~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~   44 (118)
T 4ae4_A            5 SPSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLF   44 (118)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence            4556788999999999999999999999999999999987

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=95.25  E-value=0.12  Score=40.13  Aligned_cols=85  Identities=18%  Similarity=0.348  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCccC
Q psy17487          7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISS   86 (199)
Q Consensus         7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   86 (199)
                      .+|.+|+.++-=+        .+.-.++++....+.+...     .|....++|.++.+||.+||.+...-|+  |.   
T Consensus         4 ~~li~Ei~~iGW~--------~l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~---   65 (186)
T 3zqs_A            4 SSLIEEIGTLGWD--------KLVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--PF---   65 (186)
T ss_dssp             CSHHHHHHHHCGG--------GEEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--CC---
T ss_pred             HHHHHHHHHhCCc--------eeeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc---
Confidence            4678888888221        1223356788999888843     3678999999999999999988766543  11   


Q ss_pred             CCCeeeccCchhhhhhcccHHHHHHHHHHHHhc
Q psy17487         87 VTGAICLDILKDQWAAAMTLRTVLLSLQALMAA  119 (199)
Q Consensus        87 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~  119 (199)
                           .     -.|+|..++.+++.+.+..+.+
T Consensus        66 -----~-----~~w~~~ssL~~v~~qF~~~Le~   88 (186)
T 3zqs_A           66 -----C-----ASWTPQSSLISIYSQFLAAIES   88 (186)
T ss_dssp             -----C-----CCCCTTCCHHHHHHHHHHHHHH
T ss_pred             -----c-----cccCCCccHHHHHHHHHHHHHH
Confidence                 0     2588888999998887777664

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=95.19  E-value=0.092  Score=37.80  Aligned_cols=69  Identities=13%  Similarity=0.116  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhcCCCCCcceEEEecC--CCcceeeEEEeCCCCCCC--CCcEEEEEEEeCCCCCCCCCccccccc
Q psy17487          7 QRIKREFKEVIKSEEVAKCAIKLELID--DNYTELKGEIAGPPDTPY--EGGNFVLEIKVPETYPFNPPKVKFLTK   78 (199)
Q Consensus         7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~--dn~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t~   78 (199)
                      .+...|+..|.--   .+..+.+....  .....+.+.|..+.+..-  ..-.+.+.|.||++||..+|.|...+.
T Consensus        11 e~~~~EleaL~SI---Y~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~   83 (128)
T 2day_A           11 WVLPSEVEVLESI---YLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   83 (128)
T ss_dssp             CHHHHHHHHHHHH---STTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHH---CCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence            3567888888652   33344433221  123445555542222111  124788999999999999999987763

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=95.07  E-value=0.039  Score=34.03  Aligned_cols=39  Identities=26%  Similarity=0.124  Sum_probs=33.7

Q ss_pred             cchHHHHHHHHhcCCChHHHHHHHhhcCC-chHHHHHhhh
Q psy17487        160 PDFDSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIF  198 (199)
Q Consensus       160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~e~~~  198 (199)
                      +.-.+.++.|++|||+.+.|..||+..|- .+++|+|-|+
T Consensus         7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~   46 (54)
T 2cos_A            7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS   46 (54)
T ss_dssp             SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence            44567789999999999999999999987 6899988774

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=94.39  E-value=0.21  Score=36.35  Aligned_cols=68  Identities=9%  Similarity=0.112  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecC------CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELID------DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLT   77 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~------dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   77 (199)
                      ..+-..|+..|.-   ..+..+.+....      +....+.+.|.+..+ .-..-.+.+.|.+|++||..||.|.+.+
T Consensus        12 ~e~q~~EleaL~S---IY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           12 YEIQCNELEAIRS---IYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             HHHHHHHHHHHHT---TSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             HHHHHHHHHHHHH---HChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            3456677877754   122233221110      124566777763222 1123478899999999999999998765

>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}

Probab=94.31  E-value=0.052  Score=32.39  Aligned_cols=37  Identities=22%  Similarity=0.412  Sum_probs=31.3

Q ss_pred             chHHHHHHHHhc-CCCh-HHHHHHHhhcCCchHHHHHhh
Q psy17487        161 DFDSKIQRLTDM-GVMS-HDARVALSTYNWELERATEAI  197 (199)
Q Consensus       161 ~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~e~~  197 (199)
                      +-+.++.++++. |.+. ..|+.-|..++||++.|+...
T Consensus         4 d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f   42 (45)
T 3e21_A            4 DREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGV   42 (45)
T ss_dssp             CHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC
T ss_pred             cHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence            346778888888 8886 999999999999999998654

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.90  E-value=0.24  Score=35.59  Aligned_cols=67  Identities=10%  Similarity=0.070  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhcCCCCCc--ceEEEe-cCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccc
Q psy17487          7 QRIKREFKEVIKSEEVAKC--AIKLEL-IDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLT   77 (199)
Q Consensus         7 ~RL~~E~~~l~~~~~~~~~--~i~v~~-~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   77 (199)
                      .+...|+..|.--   .+.  .+.+.. ...+...+.+.|.. .+..-..-.+.+.|.+|++||..||.+.+.+
T Consensus        10 e~q~~EleaL~SI---y~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           10 EPVQEELSVLAAI---FCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             HHHHHHHHHHHHH---HCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             HHHHHHHHHHHHH---cCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            3456788777541   111  222211 11224577777763 2211112478999999999999999987653

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=91.10  E-value=0.32  Score=31.16  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=30.3

Q ss_pred             HHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        164 SKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       164 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      ..|+.|.++ |..-.+|..||...+||++.|++.|.
T Consensus        11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr   46 (64)
T 2cp9_A           11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH   46 (64)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            456677666 88999999999999999999999875

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=90.87  E-value=0.68  Score=34.53  Aligned_cols=23  Identities=17%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             EEEEEEEeCCCCCCCCCcccccc
Q psy17487         55 NFVLEIKVPETYPFNPPKVKFLT   77 (199)
Q Consensus        55 ~f~~~i~fp~~YP~~pP~v~f~t   77 (199)
                      .+.++|.+|.+||..+|.|...+
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~   98 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRS   98 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEEC
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEe
Confidence            79999999999999999997654

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=90.85  E-value=0.4  Score=28.05  Aligned_cols=36  Identities=19%  Similarity=0.476  Sum_probs=28.9

Q ss_pred             HHHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        163 DSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       163 ~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      +..+.++++. |.+...|+.-|...+|+++.|+...+
T Consensus         6 ~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff   42 (46)
T 1v92_A            6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFY   42 (46)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3456666665 78899999999999999999996543

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=89.60  E-value=0.17  Score=36.79  Aligned_cols=68  Identities=19%  Similarity=0.186  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCC-----CcceeeEEEeCCCC-C-CCCCcEEEEEEEeCCCCCCCCCcccccc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDD-----NYTELKGEIAGPPD-T-PYEGGNFVLEIKVPETYPFNPPKVKFLT   77 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-----n~~~w~~~i~Gp~~-t-py~gg~f~~~i~fp~~YP~~pP~v~f~t   77 (199)
                      ..+...|+..|.--   .+..+.+.....     ......+.|. +.+ . .-..-.+.+.|.||++||..||.|.+..
T Consensus        12 ~e~q~~EleaL~SI---Y~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   86 (137)
T 1ukx_A           12 SQRQDHELQALEAI---YGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             HHHHHHHHHHHHHH---TSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             HHHHHHHHHHHHHH---CcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence            45667888888652   233333321111     1344555554 221 1 0012468999999999999999998753

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=88.75  E-value=0.3  Score=36.24  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             EEEEEEEeCCCCCCCCCcccccc
Q psy17487         55 NFVLEIKVPETYPFNPPKVKFLT   77 (199)
Q Consensus        55 ~f~~~i~fp~~YP~~pP~v~f~t   77 (199)
                      .+.+.|.+|.+||..||.+....
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~   96 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRS   96 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEEC
T ss_pred             eEEEEEECCCCCCCCCCeEEEEc
Confidence            68899999999999999997664

>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.60  E-value=0.69  Score=29.73  Aligned_cols=39  Identities=23%  Similarity=0.451  Sum_probs=31.3

Q ss_pred             cchHHHHHHHHhc-C-CChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        160 PDFDSKIQRLTDM-G-VMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       160 ~~~~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      .+-+.++.+++.. | -+...|+..|...+|+++.|+...|
T Consensus        16 ~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff   56 (67)
T 2dam_A           16 QEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRL   56 (67)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3445677777776 6 6888999999999999999996543

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=87.89  E-value=1.2  Score=27.79  Aligned_cols=38  Identities=13%  Similarity=0.190  Sum_probs=34.3

Q ss_pred             chHHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        161 DFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       161 ~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      ..+..+..|.+|  +++...+..+|..+++++++|+..||
T Consensus         8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL   47 (59)
T 1wgl_A            8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLL   47 (59)
T ss_dssp             SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            357888899999  88999999999999999999999987

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.69  E-value=1.3  Score=28.46  Aligned_cols=40  Identities=8%  Similarity=0.199  Sum_probs=36.1

Q ss_pred             CcchHHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        159 NPDFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       159 ~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      ..+++..++.|.+|  .++...+..+|..+++++++|++.||
T Consensus        15 ~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL   56 (67)
T 2dhy_A           15 RLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLL   56 (67)
T ss_dssp             CCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            45689999999999  88888888999999999999999987

>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}

Probab=87.65  E-value=1.1  Score=28.40  Aligned_cols=38  Identities=29%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             chHHHHHHHHhc-CCChHHHHHHHhhcCCchHHHH---Hhhh
Q psy17487        161 DFDSKIQRLTDM-GVMSHDARVALSTYNWELERAT---EAIF  198 (199)
Q Consensus       161 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~---e~~~  198 (199)
                      +++.++.++++. |-+..-++-.|...+||+.+|+   |+|+
T Consensus        16 dmdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~eqLr   57 (73)
T 2l2d_A           16 DMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYEQLR   57 (73)
T ss_dssp             CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhHHHHH
Confidence            567788888776 8999999999999999999998   6553

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.02  E-value=1  Score=28.32  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=31.6

Q ss_pred             cchHHHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        160 PDFDSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       160 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      +..+..|.+++.. |-+...|+..|...+|+++.|+...|
T Consensus        13 ~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff   52 (62)
T 2dal_A           13 SALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFL   52 (62)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3446677777776 88899999999999999999996543

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.75  E-value=2.4  Score=27.05  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=28.7

Q ss_pred             HHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        164 SKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       164 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      ..+.+++.. |-+...|+..|...+|+++.|+...+
T Consensus        19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff   54 (66)
T 2dzl_A           19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFF   54 (66)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            456666666 88999999999999999999996544

>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}

Probab=80.67  E-value=9.6  Score=28.61  Aligned_cols=62  Identities=13%  Similarity=0.132  Sum_probs=42.0

Q ss_pred             hhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhh
Q psy17487        126 QDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAI  197 (199)
Q Consensus       126 ~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~  197 (199)
                      .-.||.+.+....-.-.+-++++.+.          -.+|++++.+.|| +.+.+.-||..++.|++.|+-+|
T Consensus        76 s~~EAr~Aw~~~~Gd~~~Av~~ci~~----------R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL  138 (162)
T 4dbg_B           76 SCQEARRAWLDRHGNLDEAVEECVRT----------RRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL  138 (162)
T ss_dssp             CHHHHHHHHHHTTTCHHHHHHHHHHH----------HHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHccCChHHHHHHHHHH----------HHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence            33666666654333333444444433          4678899999984 56667799999999999998554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	2e-49
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	8e-42
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	9e-41
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	4e-39
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	6e-37
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-36
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	2e-35
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-35
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	3e-34
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	6e-34
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	8e-34
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	1e-33
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	2e-33
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	2e-33
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	7e-33
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	2e-32
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	2e-32
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	4e-32
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	7e-32
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-31
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	3e-31
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	5e-31
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	9e-31
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	1e-30
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	2e-30
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	3e-30
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	2e-29
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	6e-29
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	2e-28
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	1e-27
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	7e-24
d1oqya1	41	a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Hum	2e-07
d1wgna_	63	a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1	4e-05
d1wiva_	73	a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress	6e-04
d3e46a1	42	a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E	0.001
d1wjia_	63	a.5.2.1 (A:) Tudor domain containing protein 3, TD	0.002
d1vg5a_	73	a.5.2.1 (A:) Rhomboid family protein At3g58460 {Th	0.004

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  156 bits (394), Expect = 2e-49
 Identities = 128/154 (83%), Positives = 143/154 (92%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MANIA QRIKREFKEV+KSEE +K  IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 1   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 61  KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 120

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 154
           EPDDPQDAVVA QYK+NPEMF  TAR W +VYAG
Sbjct: 121 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 154

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score =  136 bits (343), Expect = 8e-42
 Identities = 73/147 (49%), Positives = 99/147 (67%)

Query: 7   QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           Q+++R       +       +  +++  +    +G IAGP  TPYEGG+F L+I +P  Y
Sbjct: 14  QQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDY 73

Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
           P+NPPK+KF+TKIWHPNISS TGAICLDILK +W+ A+T+RT LLS+QA++A   P DPQ
Sbjct: 74  PYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQ 133

Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
           DA VAK   EN  +F  TA+ WT  +A
Sbjct: 134 DAEVAKMMIENHPLFVQTAKLWTETFA 160

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score =  133 bits (335), Expect = 9e-41
 Identities = 62/150 (41%), Positives = 91/150 (60%), Gaps = 4/150 (2%)

Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           +A +RI++E +++ +             + D+    +  I GPP++PY+GG F L I  P
Sbjct: 1   MALKRIQKELQDLGRDPPAQ---CSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFP 57

Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+  VLLS+ +L+    PD
Sbjct: 58  TDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPD 116

Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP    +A+ YK + E +   AR WT  YA
Sbjct: 117 DPLVPEIARIYKTDRERYNQLAREWTQKYA 146

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score =  129 bits (324), Expect = 4e-39
 Identities = 63/149 (42%), Positives = 81/149 (54%), Gaps = 4/149 (2%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           +A+RI++E  E+                 DN  E +  I GPP + YEGG F L+I    
Sbjct: 3   SAKRIQKELAEITLDPP---PNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSP 59

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YPF PPKV F T+I+H NI+S  G ICLDILKD W+ A+T+  VLLS+ +L+    P D
Sbjct: 60  DYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 118

Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P    +A QY  N       AR WT  YA
Sbjct: 119 PLVGSIATQYMTNRAEHDRMARQWTKRYA 147

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score =  123 bits (310), Expect = 6e-37
 Identities = 78/150 (52%), Positives = 103/150 (68%), Gaps = 4/150 (2%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
            A+RI +E + V          I LE + + +   LKG   GPP TPYEGG FV++I+VP
Sbjct: 2   RAKRIMKEIQAVKDDPA---AHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVP 58

Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
             YPF PPK++F TK++HPNISSVTGAICLDILK+ W+  +TL++ L+SLQAL+ + EP+
Sbjct: 59  MEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPN 118

Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DPQDA VA+ Y  + E F  TA  WT +YA
Sbjct: 119 DPQDAEVAQHYLRDRESFNKTAALWTRLYA 148

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score =  121 bits (304), Expect = 5e-36
 Identities = 64/146 (43%), Positives = 89/146 (60%), Gaps = 4/146 (2%)

Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
           RI +E ++++         I  E  DDN    +  I GP  +PYE G F LE+ +P+ YP
Sbjct: 7   RIIKETEKLVSDP---VPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYP 63

Query: 68  FNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQD 127
              PKV+FLTKI+HPNI    G ICLD+LK  W+ A+ +RTVLLS+QAL+A+  P+DP  
Sbjct: 64  MEAPKVRFLTKIYHPNIDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLA 122

Query: 128 AVVAKQYKENPEMFTLTARHWTNVYA 153
             VA+ + +N +     AR WT +YA
Sbjct: 123 NDVAEDWIKNEQGAKAKAREWTKLYA 148

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score =  119 bits (300), Expect = 2e-35
 Identities = 70/146 (47%), Positives = 93/146 (63%), Gaps = 4/146 (2%)

Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
           RI +E + ++         IK E  + N       IAGP D+P+EGG F LE+ +PE YP
Sbjct: 6   RIIKETQRLLAEP---VPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYP 62

Query: 68  FNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQD 127
              PKV+F+TKI+HPN+    G ICLDILKD+W+ A+ +RTVLLS+QAL++A  PDDP  
Sbjct: 63  MAAPKVRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 121

Query: 128 AVVAKQYKENPEMFTLTARHWTNVYA 153
             VA+Q+K N      TAR WT +YA
Sbjct: 122 NDVAEQWKTNEAQAIETARAWTRLYA 147

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score =  119 bits (298), Expect = 5e-35
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 4/149 (2%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           A +R+ R+FK + +        +    + DN       I GP DTPYE G F L ++  E
Sbjct: 4   ARRRLMRDFKRMKEDAP---PGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDE 60

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YP  PP VKFL++++HPN+ +  G ICLDIL+++W     + ++L S+Q+L     P  
Sbjct: 61  EYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPAS 119

Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P +   A  +K++   +    +       
Sbjct: 120 PANVEAATLFKDHKSQYVKRVKETVEKSW 148

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 3e-34
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           MA+   +R+++E    ++++      +  + + ++ T+   ++ G P T YEG  F L  
Sbjct: 1   MAS-MQKRLQKELLA-LQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLF 58

Query: 61  KVPETYPFNPPKVKFLTKIW--HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 118
           K    YPF+ P+V F  +    HP++ S  G ICL IL + W+ A+++++V LS+ ++++
Sbjct: 59  KFSSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 117

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score =  116 bits (291), Expect = 6e-34
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 18/159 (11%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
           ++  +K++  ++ +            L+DD +  + +  + GPPDT YEGG F   +  P
Sbjct: 1   SSLLLKKQLADMRRVPV---DGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFP 57

Query: 64  ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD-------------QWAAAMTLRTVL 110
             YP  PPK+KF+++IWHPNI    G +C+ IL D             +W    T+ T+L
Sbjct: 58  RDYPQKPPKMKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETIL 116

Query: 111 LSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
           LS+ +++     + P +   AK  +EN   F        
Sbjct: 117 LSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCV 155

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score =  115 bits (288), Expect = 1e-33
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 6/126 (4%)

Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           R+  E +E  K       +  LE  +D   T   G I GPP T YE   + L+I+    Y
Sbjct: 9   RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 68

Query: 67  PFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALMAAAE-P 122
           P  PP V+F+TKI    ++S  G +    + +L  +W  + +++ VL  L+ LM + E  
Sbjct: 69  PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENM 127

Query: 123 DDPQDA 128
             PQ  
Sbjct: 128 KLPQPP 133

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score =  114 bits (287), Expect = 2e-33
 Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 1   MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
           M   A   + R+F ++ ++       I  + + ++  E + EI G  ++ ++G  F L I
Sbjct: 1   MHGRAYLLLHRDFCDLKENNY---KGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTI 57

Query: 61  KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMA 118
                Y + PP VKF+T  +HPN+   TG  C+D L   ++W    TL ++LL+LQ +++
Sbjct: 58  HFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLS 117

Query: 119 AAEPDDPQDAVVAKQYKENPEMFTLTARHW 148
               ++P +   A+   ++  ++    R +
Sbjct: 118 NPVLENPVNLEAARILVKDESLYRTILRLF 147

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score =  115 bits (288), Expect = 2e-33
 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
           A+ A  RI+++  E+   +    C I      D+    K  I  P +  Y+ G FV   K
Sbjct: 1   ASAAQLRIQKDINELNLPKT---CDISFSD-PDDLLNFKLVI-CPDEGFYKSGKFVFSFK 55

Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
           V + YP +PPKVK  T ++HPNI  + G +CL+IL++ W   +T+ +++  LQ L     
Sbjct: 56  VGQGYPHDPPKVKCETMVYHPNID-LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPN 114

Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQ 167
           P+DP +   A+  + N  +F    +       GG   +  F+  ++
Sbjct: 115 PEDPLNKEAAEVLQNNRRLFEQNVQRSMR---GGYIGSTYFERCLK 157

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score =  113 bits (283), Expect = 7e-33
 Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 1/150 (0%)

Query: 3   NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKV 62
           N+    I+  +KEV          IK+   +++ T+L+  I GP  TPY GG F +++ +
Sbjct: 2   NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 61

Query: 63  PETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 122
            + +P +PPK  FLTKI+HPN+ +  G IC+++LK  W A + +R VLL+++ L+    P
Sbjct: 62  GKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNP 120

Query: 123 DDPQDAVVAKQYKENPEMFTLTARHWTNVY 152
           +   +    +   EN E +   AR  T ++
Sbjct: 121 ESALNEEAGRLLLENYEEYAARARLLTEIH 150

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score =  112 bits (280), Expect = 2e-32
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 3/149 (2%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           A+ R+ +E +++ K        ++    DD    +   +  P   PY    F L I  P 
Sbjct: 1   ASMRVVKELEDLQKKPP---PYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPP 57

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YPF PP +KF TKI+HPN+          I  + W        VL +L  L+      +
Sbjct: 58  EYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIRE 117

Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P    +A    +NPE+F   A  +T  + 
Sbjct: 118 PLRMDLADLLTQNPELFRKNAEEFTLRFG 146

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score =  112 bits (280), Expect = 2e-32
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 5/154 (3%)

Query: 4   IAAQRIKREFKEVIKSEEVAKCAIKLELID--DNYTELKGEIAGPPDTPYEGGNFVLEIK 61
           IA  R+ +E K   K       A+  +  D   N    +  I G   TP+EGG F L + 
Sbjct: 2   IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 61

Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAA 119
             + YP +PPK KF   ++HPN+      + L IL++   W  A+T++ +LL +Q L+  
Sbjct: 62  FKDDYPSSPPKCKFEPPLFHPNVYPSGT-VSLSILEEDKDWRPAITIKQILLGIQELLNE 120

Query: 120 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
               DP  A     Y +N   +    R     +A
Sbjct: 121 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 154

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score =  111 bits (278), Expect = 4e-32
 Identities = 45/145 (31%), Positives = 83/145 (57%), Gaps = 4/145 (2%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           + +R+ R+FK++ +        +     +DN    +  I GP +TP+E G F L ++  E
Sbjct: 4   SRRRLMRDFKKLQEDP---PAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTE 60

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YP  PP VKF++K++HPN+ +  G+ICLDIL+++W+    +  +L S+Q+L+    P+ 
Sbjct: 61  EYPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 119

Query: 125 PQDAVVAKQYKENPEMFTLTARHWT 149
           P +++ A+ Y+EN   +    +   
Sbjct: 120 PANSLAAQLYQENRREYEKRVQQIV 144

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score =  110 bits (277), Expect = 7e-32
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 8/150 (5%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           + +R + ++  +  S              D   E   E  GP  TPYE G ++L +++P 
Sbjct: 1   SNRRREMDYMRLCNSTRKVY-------PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPS 53

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRT-VLLSLQALMAAAEPD 123
            YPF  P + F  +I HPN+   +G++CLD++   W     L     + L  L+    P 
Sbjct: 54  DYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPS 113

Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           DP +   A     +   F    R   + +A
Sbjct: 114 DPLNVQAAHLLHADRVGFDALLREHVSTHA 143

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score =  109 bits (273), Expect = 2e-31
 Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 5/149 (3%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
             +R+++E   ++ S +     I      DN  +  G I G   T YE   + L ++ P 
Sbjct: 2   VGKRLQQELMTLMMSGD---KGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 58

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YP+N P VKFLT  +HPN+ +  G I LDILK++W+A   +RT+LLS+Q+L+     D 
Sbjct: 59  GYPYNAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDS 117

Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
           P +   A+ +K NP  F    +   +   
Sbjct: 118 PLNTHAAELWK-NPTAFKKYLQETYSKQV 145

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score =  109 bits (272), Expect = 3e-31
 Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 6   AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPET 65
           ++R+ +E +E+ K        I+++  + N    +G I  P + PY+ G F +EI  P  
Sbjct: 1   SRRLMKELEEIRKCGMKNFRNIQVD--EANLLTWQGLI-VPDNPPYDKGAFRIEINFPAE 57

Query: 66  YPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP 125
           YPF PPK+ F TKI+HPNI          I  + W  A     V+ SL AL+   +P+ P
Sbjct: 58  YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 117

Query: 126 QDAVVAKQYKENPEMFTLTARHWTNVY 152
             A +A++Y ++ + F   A  +T  Y
Sbjct: 118 LRADLAEEYSKDRKKFCKNAEEFTKKY 144

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score =  107 bits (267), Expect = 5e-31
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
           RI++E    + +         L++  +N      +  G  +T Y    + L+I  P+ YP
Sbjct: 2   RIQKELHNFLNNPP---INCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 58

Query: 68  FNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 118
             PP V FL K          G ICL +L D +  ++++  ++LS+ ++++
Sbjct: 59  LKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 109

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score =  108 bits (270), Expect = 9e-31
 Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 16/161 (9%)

Query: 2   ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
           +  A +R+ +E +++IK       A      ++N       I GPPDTPY  G F  +++
Sbjct: 1   SKTAQKRLLKELQQLIKDSPPGIVAGPKS--ENNIFIWDCLIQGPPDTPYADGVFNAKLE 58

Query: 62  VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRT 108
            P+ YP +PPK+ F   I HPNI    G +C+ IL             +++W+   ++  
Sbjct: 59  FPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEK 117

Query: 109 VLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
           +LLS+ ++++    +   +      +++N   F    +   
Sbjct: 118 ILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 158

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score =  107 bits (268), Expect = 1e-30
 Identities = 62/153 (40%), Positives = 85/153 (55%), Gaps = 8/153 (5%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
            A R+KRE   +          I      D   +L+ +I G  +TPYE G F LE+ +PE
Sbjct: 3   RASRLKRELHMLATEPP---PGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 59

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD----QWAAAMTLRTVLLSLQALMAAA 120
            YPF PP+++FLT I+HPNI S  G ICLD+LK      W  ++ + TVL S+Q LM+  
Sbjct: 60  RYPFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 118

Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
            PDDP  A ++ ++K N   F   AR WT  +A
Sbjct: 119 NPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score =  106 bits (265), Expect = 2e-30
 Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 18/125 (14%)

Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
            ++R+  E+ K+           LIDD +    +  I GPPDT YEGG F   +  P+ Y
Sbjct: 3   LLRRQLAELNKNPV---EGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDY 59

Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSL 113
           P  PPK+KF+T+IWHPN+    G +C+ IL             +++W    T+ T+++S+
Sbjct: 60  PLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 118

Query: 114 QALMA 118
            +++A
Sbjct: 119 ISMLA 123

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score =  106 bits (266), Expect = 3e-30
 Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 13/166 (7%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
           A QR+K+++  + K        I  E +  N  E    + GP  TPYEGG +  ++  P 
Sbjct: 2   ATQRLKQDYLRIKKDPV---PYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPR 58

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            +PF PP +  +T       ++       D   D W  A ++ T+L  L + M    P  
Sbjct: 59  EFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL 118

Query: 125 P---QDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQ 167
                     +Q       F L  + +  ++       P+   +I+
Sbjct: 119 GSIETSDFTKRQLAVQSLAFNLKDKVFCELF-------PEVVEEIK 157

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score =  103 bits (259), Expect = 2e-29
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
           R+  E ++  K      C+  L   DD   T+  G I GPP + +E   + L I     Y
Sbjct: 8   RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 67

Query: 67  PFNPPKVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDP 125
           P +PPKV F++KI  P ++  TG +  D      W  A T+ T+LL L+  MA       
Sbjct: 68  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKL 127

Query: 126 Q 126
           +
Sbjct: 128 R 128

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 6e-29
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVL--EIKVPET 65
              RE   VI   +  K  +   + +D  +     + G    PY G  + +   + + +T
Sbjct: 18  LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 77

Query: 66  YPFNPPKVKFLTK-----IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
           YP+NPP                ++ +  G I L  L +       L  ++  +  +    
Sbjct: 78  YPYNPPICFVKPTSSMTIKTGKHVDA-NGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE 136

Query: 121 EP 122
            P
Sbjct: 137 PP 138

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score =  101 bits (253), Expect = 2e-28
 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
            ++R+++E + ++ S +     I      DN  +    + GP DT YE   + L ++ P 
Sbjct: 10  VSKRLQQELRTLLMSGD---PGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66

Query: 65  TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
            YP+ PP VKF T  WHPN+   +G ICLDILK+ W A+  +RT+LLSLQ+L+       
Sbjct: 67  DYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNAS 125

Query: 125 PQDAVVAKQYKENPE 139
           P +A  A  +    E
Sbjct: 126 PLNAQAADMWSNQTE 140

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-27
 Identities = 27/156 (17%), Positives = 67/156 (42%), Gaps = 14/156 (8%)

Query: 5   AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAG-PPDTPYEGG--------- 54
           A+ R+ +E +++ +S+        +ELI+D+  +   ++    PD+P             
Sbjct: 5   ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEG 64

Query: 55  --NFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLL 111
               +L     + +PF+PP V+ +  +         GA+C+++L K  W++A ++ +V++
Sbjct: 65  IEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIM 124

Query: 112 SLQALMAAAEPDDPQDAVVAK-QYKENPEMFTLTAR 146
            + A +   +      A   +       + +    +
Sbjct: 125 QINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ 160

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.4 bits (224), Expect = 7e-24
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 16/131 (12%)

Query: 8   RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG---NFVLEIKVPE 64
               +   ++ +    +   ++    D   +L   I G   T  +G    +  + + VP 
Sbjct: 23  TTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPS 82

Query: 65  TYPFNPPKVKFLTK-----------IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSL 113
            YP  PP +    +                I S  G I L IL     AAM L  V+  L
Sbjct: 83  MYPVKPPFISINLENFDMNTISSSLPIQEYIDS-NGWIALPILHCWDPAAMNLIMVVQEL 141

Query: 114 QALMAAAEPDD 124
            +L+    P D
Sbjct: 142 MSLL-HEPPQD 151

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (103), Expect = 2e-07
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
            ++++ +  +  MG        AL        RA E + T
Sbjct: 2   SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 41

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 4e-05
 Identities = 7/48 (14%), Positives = 18/48 (37%)

Query: 152 YAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
           Y+     +P     ++ + +MG        A+      +E+  + +F 
Sbjct: 9   YSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA 56

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.8 bits (80), Expect = 6e-04
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
            S +  L   G     AR AL     ++E+AT+ +F 
Sbjct: 30  QSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN 66

>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 0.001
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198
           +P++  KI+ L   G   +   VALS+ +W++E ATE + 
Sbjct: 3   SPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLL 42

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
           +  ++ +T+MG     +R AL      LE A   + T
Sbjct: 10  EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT 46

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.0 bits (75), Expect = 0.004
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 156 PSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
             +    + +IQ+L  MG       VAL+  + +L  A E + +
Sbjct: 23  QGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.82
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.75
d3e46a1	42	Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal	98.97
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	98.8
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	98.38
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	98.03
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	97.98
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	97.98
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	97.96
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	97.78
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	97.52
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	97.03
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	96.99
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.97
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	96.79
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	96.78
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	96.66
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	96.38
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	95.97
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	95.81
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	93.93
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	93.13
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	92.13
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	91.62
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	91.58
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	91.48
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	91.38
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	90.0
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	89.83
d1ttea1	55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	89.71
d1oqya2	44	DNA repair protein Hhr23a {Human (Homo sapiens) [T	86.84
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	85.97
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	85.16
d1vega_	83	NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculu	85.0

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.3e-50  Score=308.19  Aligned_cols=154  Identities=83%  Similarity=1.323  Sum_probs=148.2

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      ||+.|.+||++|+++|.++......++.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus         1 Ms~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (154)
T d2bepa1           1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   80 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCC
Confidence            99999999999999998864445678999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      ||||++.+|.||++++.+.|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++|||
T Consensus        81 Hpni~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~t~k~A~  154 (154)
T d2bepa1          81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  154 (154)
T ss_dssp             BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CCCeeCCCCccccccccccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            99999779999999999999999999999999999999999999999999999999999999999999999997

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=7.1e-48  Score=294.43  Aligned_cols=147  Identities=43%  Similarity=0.741  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      .+.|||++|+++|+++   ++.|+++.+.++|++.|+++|.||++|||+||+|++.|.||++||++||+|+|.|+|||||
T Consensus         2 ~~~kRi~~E~~~l~~~---~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPn   78 (148)
T d1y6la_           2 TSAKRIQKELAEITLD---PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCN   78 (148)
T ss_dssp             HHHHHHHHHHHHHHHS---CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             hHHHHHHHHHHHHhhC---CCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCce
Confidence            5799999999999986   6889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         84 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        84 V~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      |+. +|.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|++|||.
T Consensus        79 v~~-~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~A~  148 (148)
T d1y6la_          79 INS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  148 (148)
T ss_dssp             BCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ECC-CCeEEEEecCCcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence            995 9999999999999999999999999999999999999999999999999999999999999999984

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=1.2e-47  Score=294.02  Aligned_cols=149  Identities=30%  Similarity=0.588  Sum_probs=144.1

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      |++.+.|||++||++|+++   ++.|+++.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|
T Consensus         3 ~~~~~~kRl~kEl~~l~~~---~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   79 (151)
T d1zdna1           3 LPPHIIRLVYKEVTTLTAD---PPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIF   79 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHS---CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCC
Confidence            6788999999999999986   5779999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA  153 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a  153 (199)
                      ||||+. +|.||++++.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++|.
T Consensus        80 HPnI~~-~G~ic~~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~~~~~~g  151 (151)
T d1zdna1          80 HPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  151 (151)
T ss_dssp             CTTBCT-TSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CceecC-CCCcccccccccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence            999995 999999999999999999999999999999999999999999999999999999999999999984

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=3.1e-47  Score=290.38  Aligned_cols=147  Identities=41%  Similarity=0.828  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      +|.|||++|+++|+++   ++.|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         1 ~a~kRL~~E~~~l~~~---~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   77 (147)
T d1z2ua1           1 MALKRIQKELQDLGRD---PPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   77 (147)
T ss_dssp             HHHHHHHHHHHHHHHS---CCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             CHHHHHHHHHHHHHhC---CCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceee
Confidence            3799999999999996   6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         84 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        84 V~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      |+ .+|.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus        78 V~-~~G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~k~A~  147 (147)
T d1z2ua1          78 IN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  147 (147)
T ss_dssp             BC-TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             EC-CCCCEeeehhcccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence            99 59999999999999999999999999999999999999999999999999999999999999999984

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=8.7e-47  Score=290.06  Aligned_cols=148  Identities=42%  Similarity=0.741  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      ++.+||++|+++|.++   ++.|+++.+.++|++.|+++|.||+||||+||+|++.|.||++||++||+|+|.|++||||
T Consensus         2 ~~~~Rl~kE~~~l~~~---~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPn   78 (154)
T d1yh2a1           2 QRASRLKRELHMLATE---PPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN   78 (154)
T ss_dssp             HHHHHHHHHHHHHHHS---CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             cHHHHHHHHHHHHHHC---cCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCC
Confidence            4689999999999996   6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCch----hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         84 ISSVTGAICLDILK----DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        84 V~~~~G~icl~~l~----~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                      |+. +|.||++++.    ++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        79 V~~-~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~k~a~~  153 (154)
T d1yh2a1          79 IDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ  153 (154)
T ss_dssp             BCT-TCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             cCC-CCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence            995 9999999994    6899999999999999999999999999999999999999999999999999999975

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=9.9e-48  Score=294.83  Aligned_cols=148  Identities=43%  Similarity=0.767  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      .+.|||++|+++|+++   ++.|+.+.+.++|++.|+++|.||.+|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus         3 ~~~rRl~~E~~~l~~~---~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPn   79 (152)
T d1jata_           3 SLPKRIIKETEKLVSD---PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPN   79 (152)
T ss_dssp             SCCHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             cHHHHHHHHHHHHHhC---CCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCc
Confidence            4679999999999996   6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         84 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        84 V~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                      |+. +|.+|++++...|+|+++|.+||.+|++||.+|++++|+|.+||++|.+|+++|.++||+|+++||..
T Consensus        80 I~~-~G~icl~~~~~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~~~~~a~~  150 (152)
T d1jata_          80 IDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK  150 (152)
T ss_dssp             BCT-TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred             CCC-CCCeeeccccccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence            995 99999999999999999999999999999999999999999999999999999999999999999874

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=4.8e-47  Score=290.10  Aligned_cols=146  Identities=48%  Similarity=0.808  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCcc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNIS   85 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   85 (199)
                      .|||++|+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         4 ~kRl~kEl~~l~~~---~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~   80 (149)
T d1j7db_           4 PRRIIKETQRLLAE---PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD   80 (149)
T ss_dssp             CHHHHHHHHHHTTS---CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred             cHHHHHHHHHHHhC---CCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceEC
Confidence            48999999999886   678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         86 SVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        86 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                       .+|.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        81 -~~G~icl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~~~kyA~~  149 (149)
T d1j7db_          81 -KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN  149 (149)
T ss_dssp             -TTCBBCCGGGTTSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             -CCCcEehHHhcCCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence             599999999999999999999999999999999999999999999999999999999999999999863

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=7.1e-47  Score=291.15  Aligned_cols=148  Identities=30%  Similarity=0.516  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEecCC-----CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccc
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDD-----NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTK   78 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-----n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   78 (199)
                      +|.+||++|+++|.++   ++.|+++.|..+     |+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+
T Consensus         2 ~a~~Rl~~E~~~~~~~---~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~   78 (156)
T d2uyza1           2 IALSRLAQERKAWRKD---HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP   78 (156)
T ss_dssp             HHHHHHHHHHHHHHHS---CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             hHHHHHHHHHHHHHHC---CCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeeccc
Confidence            5899999999999997   678999988765     99999999999999999999999999999999999999999999


Q ss_pred             cccCCccCCCCeeeccCc--hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         79 IWHPNISSVTGAICLDIL--KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        79 i~HPnV~~~~G~icl~~l--~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                      +|||||+. +|.+|+++|  .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        79 i~HPnV~~-~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~k~A~~  156 (156)
T d2uyza1          79 LFHPNVYP-SGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS  156 (156)
T ss_dssp             CCSTTBCT-TSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCCC
T ss_pred             cccccccc-cceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHCCC
Confidence            99999994 999999999  35899999999999999999999999999999999999999999999999999999973

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=8.3e-47  Score=288.79  Aligned_cols=146  Identities=31%  Similarity=0.669  Sum_probs=140.8

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP   82 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   82 (199)
                      +.|.|||++|+++|+++   ++.|+++.+.++|+++|+++|.||++|||+||+|++.|.||++||+.||+|+|.|++|||
T Consensus         2 ~pa~rRl~~E~~~l~~~---~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HP   78 (149)
T d1z3da1           2 TPSRRRLMRDFKKLQED---PPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHP   78 (149)
T ss_dssp             CHHHHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             CHHHHHHHHHHHHHhhC---CCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccce
Confidence            45789999999999986   678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHh
Q psy17487         83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVY  152 (199)
Q Consensus        83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~  152 (199)
                      ||+. +|.||+++|.+.|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++.
T Consensus        79 nI~~-~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~ks  147 (149)
T d1z3da1          79 NVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS  147 (149)
T ss_dssp             TBCT-TCBBCCGGGTTSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             eEcC-CCCEEeccccccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9995 99999999999999999999999999999999999999999999999999999999999999874

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=1.5e-46  Score=287.37  Aligned_cols=147  Identities=53%  Similarity=0.964  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEec-CCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          5 AAQRIKREFKEVIKSEEVAKCAIKLELI-DDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~-~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      +.|||++|+++|+++   ++.|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         2 ~~kRL~~El~~l~~~---~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   78 (149)
T d1fzya_           2 RAKRIMKEIQAVKDD---PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   78 (149)
T ss_dssp             HHHHHHHHHHHHHTC---GGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHHC---CCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCc
Confidence            579999999999986   6789999764 569999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         84 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        84 V~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      |+..+|.+|++++.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        79 I~~~~~~~~~~~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~k~A~  149 (149)
T d1fzya_          79 ISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             BCTTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ccCCcceeechhhcccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            99778999999999999999999999999999999999999999999999999999999999999999984

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=8.9e-47  Score=288.17  Aligned_cols=145  Identities=26%  Similarity=0.511  Sum_probs=140.1

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      |++.|.+||++|+++++++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||+.||+|+|.|++|
T Consensus         1 m~~~a~~~L~kE~~~l~~~---~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~   77 (148)
T d1yrva1           1 MHGRAYLLLHRDFCDLKEN---NYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPF   77 (148)
T ss_dssp             GGCHHHHHHHHHHHHHHHH---CCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCC
T ss_pred             CCHHHHHHHHHHHHHHHHC---CCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccc
Confidence            8999999999999999997   5789999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCc--hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHH
Q psy17487         81 HPNISSVTGAICLDIL--KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHW  148 (199)
Q Consensus        81 HPnV~~~~G~icl~~l--~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~  148 (199)
                      ||||++.+|.||+++|  .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||.+
T Consensus        78 HpnV~~~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          78 HPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF  147 (148)
T ss_dssp             CTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHHH
T ss_pred             cCceecCcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHhh
Confidence            9999977899999999  4789999999999999999999999999999999999999999999999975

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=1.6e-46  Score=288.21  Aligned_cols=148  Identities=32%  Similarity=0.628  Sum_probs=142.7

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      |..|.|||++||++|+++   ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         1 st~A~kRl~~El~~l~~~---~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H   77 (153)
T d1ayza_           1 STPARRRLMRDFKRMKED---APPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH   77 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CCHHHHHHHHHHHHHhHC---CCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCc
Confidence            456899999999999997   67899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487         82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA  153 (199)
Q Consensus        82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a  153 (199)
                      |||+. +|.||++++.+.|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++
T Consensus        78 PnI~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~~~ks~  148 (153)
T d1ayza_          78 PNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW  148 (153)
T ss_dssp             TTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cCCCC-CCccccccccccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99995 999999999999999999999999999999999999999999999999999999999999999875

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=1.9e-46  Score=291.05  Aligned_cols=149  Identities=27%  Similarity=0.550  Sum_probs=140.7

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEEec-CCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELI-DDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW   80 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~-~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (199)
                      |..|+|||++|+++|+++   ++.|+++.+. ++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++|
T Consensus         1 s~~a~kRL~~E~~~l~~~---~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   77 (164)
T d2ucza_           1 SKTAQKRLLKELQQLIKD---SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSIL   77 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHS---CCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCS
T ss_pred             CHHHHHHHHHHHHHHhhC---CCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCce
Confidence            567999999999999986   5689999985 469999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCeeeccCch-------------hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHH
Q psy17487         81 HPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARH  147 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~  147 (199)
                      ||||+. +|.||+++|.             +.|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+
T Consensus        78 HPnv~~-~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~~r~  156 (164)
T d2ucza_          78 HPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKL  156 (164)
T ss_dssp             CTTBCT-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHH
T ss_pred             eceEcC-CCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHH
Confidence            999995 9999999983             46999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q psy17487        148 WTNVYAG  154 (199)
Q Consensus       148 ~~~~~a~  154 (199)
                      +++++.+
T Consensus       157 ~~~k~~~  163 (164)
T d2ucza_         157 SILKSLG  163 (164)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            9999865

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=2.1e-46  Score=285.57  Aligned_cols=145  Identities=34%  Similarity=0.583  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487          5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI   84 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   84 (199)
                      +.|||++|+++|+++   ++.|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         2 ~~kRl~~El~~l~~~---~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   78 (146)
T d1i7ka_           2 VGKRLQQELMTLMMS---GDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNV   78 (146)
T ss_dssp             HHHHHHHHHHHHHHH---CCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTB
T ss_pred             HHHHHHHHHHHHhhC---CCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccC
Confidence            579999999999997   67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         85 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        85 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      +. +|.||++++.++|+|++++.+||.+|+++|.+|++++|+|.+||++|+ |+++|.++|+++++|||.
T Consensus        79 ~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~~-n~~~f~k~~~~~~~K~~~  146 (146)
T d1i7ka_          79 DT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQVT  146 (146)
T ss_dssp             CT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHTT-SHHHHHHHHHHHHHTTCC
T ss_pred             CC-CCccccccccccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHhh-CHHHHHHHHHHHHHccCC
Confidence            95 999999999999999999999999999999999999999999999995 999999999999999873

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=4.6e-46  Score=287.88  Aligned_cols=150  Identities=49%  Similarity=0.893  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHhcCC----------CCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccc
Q psy17487          5 AAQRIKREFKEVIKSEE----------VAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVK   74 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~----------~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   74 (199)
                      ..+||+||+++|++...          ....|+.+.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~   81 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK   81 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEE
Confidence            47899999999977321          24468999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487         75 FLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG  154 (199)
Q Consensus        75 f~t~i~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~  154 (199)
                      |.|++|||||+..+|.||++++.+.|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        82 F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y~~~v~~~t~~~a~  161 (161)
T d2f4za1          82 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK  161 (161)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ecCCCCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhC
Confidence            99999999998789999999999999999999999999999999999999999999999999999999999999999984

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=7.4e-46  Score=283.76  Aligned_cols=147  Identities=30%  Similarity=0.529  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEecC-CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487          5 AAQRIKREFKEVIKSEEVAKCAIKLELID-DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN   83 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (199)
                      |.+||++|+++|+++   ++.|+.+.+.+ +|++.|++.| ||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus         1 a~~Rl~kE~~~l~~~---~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   76 (150)
T d1wzva1           1 ASMRVVKELEDLQKK---PPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPN   76 (150)
T ss_dssp             CHHHHHHHHHHHHHS---CCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             CHHHHHHHHHHHHHC---CCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcce
Confidence            579999999999996   67899887775 4899999866 899999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeccCc-hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487         84 ISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP  156 (199)
Q Consensus        84 V~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~  156 (199)
                      |+ .+|.||+++| .++|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||..+
T Consensus        77 I~-~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~~kya~~~  149 (150)
T d1wzva1          77 VD-ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDR  149 (150)
T ss_dssp             BC-TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred             EC-CCCCcccccccccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhcccC
Confidence            99 4999999999 678999999999999999999999999999999999999999999999999999999653

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=9.5e-45  Score=279.18  Aligned_cols=145  Identities=33%  Similarity=0.623  Sum_probs=137.5

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487          3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP   82 (199)
Q Consensus         3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   82 (199)
                      +.+.|||++|+++|+++   ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         8 ~~~~kRl~kEl~~l~~~---~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   84 (156)
T d2e2ca_           8 HSVSKRLQQELRTLLMS---GDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHP   84 (156)
T ss_dssp             CCHHHHHHHHHHHHHHH---CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             chHHHHHHHHHHHHhHC---CCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCC
Confidence            35789999999999996   678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHh
Q psy17487         83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVY  152 (199)
Q Consensus        83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~  152 (199)
                      ||+. +|.||+++|.+.|+|+++|.+||.+|+++|.+|++++|+|.+||++|+ |..+|.++|++.+++.
T Consensus        85 nv~~-~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~-n~~~y~k~~~e~~~~~  152 (156)
T d2e2ca_          85 NVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKTA  152 (156)
T ss_dssp             TBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             CCCC-CCCccccccCCCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-CHHHHHHHHHHHHHHH
Confidence            9995 999999999999999999999999999999999999999999999996 6678999999988764

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=2.3e-44  Score=278.41  Aligned_cols=145  Identities=30%  Similarity=0.608  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI   84 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   84 (199)
                      ..||++|+++|+++   ++.|+.+.+.++ |+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||||
T Consensus         2 ~~~L~kE~~~l~~~---~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI   78 (161)
T d1pzva_           2 SLLLKKQLADMRRV---PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNI   78 (161)
T ss_dssp             HHHHHHHHHHHHHS---CCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTB
T ss_pred             ChHHHHHHHHHHhC---CCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCccc
Confidence            57999999999997   678999998654 79999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeccCch-------------hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487         85 SSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNV  151 (199)
Q Consensus        85 ~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~  151 (199)
                      +. +|.||+++|.             ..|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|+++
T Consensus        79 ~~-~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~v~k  157 (161)
T d1pzva_          79 DK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRR  157 (161)
T ss_dssp             CT-TSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CC-CCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            94 9999999993             259999999999999999999999999999999999999999999999999998


Q ss_pred             hcC
Q psy17487        152 YAG  154 (199)
Q Consensus       152 ~a~  154 (199)
                      +..
T Consensus       158 ~~e  160 (161)
T d1pzva_         158 SQE  160 (161)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            753

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=7.6e-45  Score=276.36  Aligned_cols=141  Identities=34%  Similarity=0.688  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHhcCCCCCcceEEEec-CCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCcc
Q psy17487          7 QRIKREFKEVIKSEEVAKCAIKLELI-DDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNIS   85 (199)
Q Consensus         7 ~RL~~E~~~l~~~~~~~~~~i~v~~~-~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   85 (199)
                      |||++||++|+++   ++.|+.+.+. ++|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|++|||||+
T Consensus         2 rRl~kEl~~l~~~---~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   77 (144)
T d1c4zd_           2 RRLMKELEEIRKC---GMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID   77 (144)
T ss_dssp             TTHHHHHTTCSSS---CCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHhC---CCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCc
Confidence            8999999999875   5678876665 56999999998 99999999999999999999999999999999999999999


Q ss_pred             CCCCeeeccCch-hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHh
Q psy17487         86 SVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVY  152 (199)
Q Consensus        86 ~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~  152 (199)
                       .+|.||+++|. +.|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++|
T Consensus        78 -~~G~icl~~l~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_          78 -EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             -TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC
T ss_pred             -cCCccccccccCCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             49999999994 6799999999999999999999999999999999999999999999999999986

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=1.3e-43  Score=273.04  Aligned_cols=146  Identities=31%  Similarity=0.570  Sum_probs=133.0

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      |+.|.+||++|+++|++.   +.+++. .+.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.+++||
T Consensus         1 ~~~a~~Rl~kEl~~l~~~---~~~~i~-~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~H   75 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNLP---KTCDIS-FSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH   75 (157)
T ss_dssp             CCHHHHHHHHHHHTCCCC---TTEEEE-CSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             CCHHHHHHHHHHHHhCCC---CCCcEE-EcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCC
Confidence            578999999999999642   333433 23457999999988 8999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487         82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA  153 (199)
Q Consensus        82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a  153 (199)
                      |||+. +|.||++++.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++.+.
T Consensus        76 Pnv~~-~G~ic~~~~~~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~~~~~  146 (157)
T d1y8xa1          76 PNIDL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY  146 (157)
T ss_dssp             TTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEE
T ss_pred             ccccc-cceeeeeecccCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHHcCCC
Confidence            99995 999999999999999999999999999999999999999999999999999999999999997543

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=1.2e-42  Score=267.88  Aligned_cols=143  Identities=27%  Similarity=0.564  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCcc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNIS   85 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   85 (199)
                      .|||++|+++|+++.      ..+.+ .||+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus         2 ~rr~~~e~~~l~~~~------~~~~~-~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~   74 (158)
T d1yf9a1           2 NRRREMDYMRLCNST------RKVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVD   74 (158)
T ss_dssp             CHHHHHHHHHHHSSS------SCEEE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             chHHHHHHHHHhcCC------CcCCC-CCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCc
Confidence            589999999998742      22455 47999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeccCchhhhhhcccHHHHHHH-HHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487         86 SVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG  155 (199)
Q Consensus        86 ~~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~  155 (199)
                      ..+|.||+++|.++|+|++++.++|.. |+.||.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        75 ~~~G~vcl~il~~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~~~k~a~~  145 (158)
T d1yf9a1          75 ERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP  145 (158)
T ss_dssp             TTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred             cCcccccccccccccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHHCCh
Confidence            778999999999999999999999975 6778899999999999999999999999999999999999866

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=3.7e-38  Score=242.41  Aligned_cols=145  Identities=24%  Similarity=0.404  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487          5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI   84 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   84 (199)
                      |.|||++||++|+++   ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|||+
T Consensus         2 A~kRl~kE~~~l~~~---p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~   78 (157)
T d2f4wa1           2 ATQRLKQDYLRIKKD---PVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKC   78 (157)
T ss_dssp             HHHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCT
T ss_pred             HHHHHHHHHHHHHhC---CCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCC
Confidence            789999999999986   67899999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCC--ch-hHHHHHHHhhCHHHHHHHHHHHHHHh
Q psy17487         85 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD--PQ-DAVVAKQYKENPEMFTLTARHWTNVY  152 (199)
Q Consensus        85 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~--p~-n~eaa~~~~~d~~~f~~~ak~~~~~~  152 (199)
                      +...+..|++++.++|+|+++|.+||.+|++||.+|+++.  +. +..+.+.|..+..+|.++++.|+++|
T Consensus        79 ~g~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f~~k~~~~~~~~  149 (157)
T d2f4wa1          79 NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELF  149 (157)
T ss_dssp             TSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCHHHHHHC
T ss_pred             CCCeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7422333444557899999999999999999999999864  23 34445678888999999999999886

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=232.70  Aligned_cols=113  Identities=31%  Similarity=0.640  Sum_probs=103.2

Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCcceEEEe--cCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccc
Q psy17487          1 MANIAAQRIKREFKEVIKSEEVAKCAIKLEL--IDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTK   78 (199)
Q Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~--~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   78 (199)
                      |++ +.|||++|+++|+++   ++.|+.+.+  .++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         1 m~~-~~kRL~kEl~~l~~~---~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~   76 (117)
T d2a7la1           1 MAS-MQKRLQKELLALQND---PPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE   76 (117)
T ss_dssp             GTT-SCHHHHHHHHHHHHS---CCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred             CCc-HHHHHHHHHHHHhhC---CCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCC
Confidence            666 579999999999986   456776654  55799999999999999999999999999999999999999999998


Q ss_pred             c--ccCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHh
Q psy17487         79 I--WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA  118 (199)
Q Consensus        79 i--~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~  118 (199)
                      +  |||||+. +|.||+++|.++|+|+++|++||.+|++||.
T Consensus        77 ~~~~Hpnv~~-~G~iCl~~l~~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          77 NIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             CCCCBTTBCT-TCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             CccccccCcC-CCeEEeecCcCCCCCcCcHHHHHHHHHHHhC
Confidence            7  9999995 9999999999999999999999999999874

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=7.9e-37  Score=221.55  Aligned_cols=107  Identities=26%  Similarity=0.537  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc-ccCCccC
Q psy17487          8 RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI-WHPNISS   86 (199)
Q Consensus         8 RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnV~~   86 (199)
                      ||+||+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||+ 
T Consensus         2 Rl~kEl~~l~~~---~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~-   77 (109)
T d2fo3a1           2 RIQKELHNFLNN---PPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY-   77 (109)
T ss_dssp             HHHHHHHHHHHS---CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC-
T ss_pred             HHHHHHHHHHhC---CCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceEC-
Confidence            999999999996   678999999999999999999999999999999999999999999999999999986 899999 


Q ss_pred             CCCeeeccCchhhhhhcccHHHHHHHHHHHHh
Q psy17487         87 VTGAICLDILKDQWAAAMTLRTVLLSLQALMA  118 (199)
Q Consensus        87 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~  118 (199)
                      .+|.||+++|.++|+|++|+++||.+|++||.
T Consensus        78 ~~G~iCl~il~~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          78 SNGDICLSLLGDDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred             CCCeEEeecccCCCCccCCHHHHHHHHHHHhC
Confidence            59999999999999999999999999999984

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=224.27  Aligned_cols=110  Identities=36%  Similarity=0.783  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHhcCCCCCcceEEEecC-CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCcc
Q psy17487          7 QRIKREFKEVIKSEEVAKCAIKLELID-DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNIS   85 (199)
Q Consensus         7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~-dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   85 (199)
                      .||+||+++|+++   ++.|+.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 ~~L~kEl~~l~~~---~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~   78 (125)
T d2awfa1           2 LLLRRQLAELNKN---PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD   78 (125)
T ss_dssp             HHHHHHHHHHHHS---CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred             chHHHHHHHHHhC---CCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccC
Confidence            5999999999997   67899998755 5899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeccCc-------------hhhhhhcccHHHHHHHHHHHHhcC
Q psy17487         86 SVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAAA  120 (199)
Q Consensus        86 ~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~ll~~p  120 (199)
                       .+|.||+++|             .++|+|++|+++||++|++||.+|
T Consensus        79 -~~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          79 -KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             -TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             -CCCEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence             5999999998             356999999999999999999876

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-38  Score=243.37  Aligned_cols=145  Identities=18%  Similarity=0.422  Sum_probs=124.9

Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeC-CCCCCCCCcE-----------EEEEEEeCCCCCCC
Q psy17487          2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAG-PPDTPYEGGN-----------FVLEIKVPETYPFN   69 (199)
Q Consensus         2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~G-p~~tpy~gg~-----------f~~~i~fp~~YP~~   69 (199)
                      |..|.+||++||++|+++.......+.+.+.+||+++|++.|.| |++|||++|.           |+++|.||++||++
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~   81 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD   81 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhh
Confidence            57899999999999987532222335678888999999999999 8999999986           99999999999999


Q ss_pred             CCccccccccccCCccCCCCeeeccCc-hhhhhhcccHHHHHHHHHHHHhcCCC--CCchhHHHHHHHhhCHHHHHHHHH
Q psy17487         70 PPKVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEP--DDPQDAVVAKQYKENPEMFTLTAR  146 (199)
Q Consensus        70 pP~v~f~t~i~HPnV~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~--~~p~n~eaa~~~~~d~~~f~~~ak  146 (199)
                      ||+|+|.|++||||+...+|.||+++| .++|+|++||++||.+|+++|.+|++  +.+.|.+++.+ .+++++|.+.||
T Consensus        82 PP~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y~~-~~~~~~y~~~~~  160 (162)
T d1zuoa1          82 PPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNL-ARAQQSYNSIVQ  160 (162)
T ss_dssp             CCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCH-HHHHHHHHHHHH
T ss_pred             cceEEEEEEeeccccccCCceeecccccCCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHHHH-HHhHHHHHHHHh
Confidence            999999999999996556899999999 66799999999999999999999876  55667666664 457788999988


Q ss_pred             H
Q psy17487        147 H  147 (199)
Q Consensus       147 ~  147 (199)
                      .
T Consensus       161 ~  161 (162)
T d1zuoa1         161 I  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=4.3e-36  Score=226.30  Aligned_cols=124  Identities=28%  Similarity=0.384  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcceEEEec----CCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc
Q psy17487          4 IAAQRIKREFKEVIKSEEVAKCAIKLELI----DDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI   79 (199)
Q Consensus         4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~----~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   79 (199)
                      -+.+||+|||++++++   ++.++...+.    ++|+++|+++|.||.+|||+||.|+++|.||++||++||+|+|.|++
T Consensus         5 ~r~~RL~kEl~~l~k~---~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i   81 (139)
T d2a4da1           5 PRNFRLLEELEEGQKG---VGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI   81 (139)
T ss_dssp             HHHHHHHHHHHHHHSC---CTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred             chhHHHHHHHHHHhhC---CCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCc
Confidence            3679999999999986   3344333332    23799999999999999999999999999999999999999999999


Q ss_pred             ccCCccCCCCeeeccCc--hhhhhhcccHHHHHHHHHHHHhcC-CCCCchhHHH
Q psy17487         80 WHPNISSVTGAICLDIL--KDQWAAAMTLRTVLLSLQALMAAA-EPDDPQDAVV  130 (199)
Q Consensus        80 ~HPnV~~~~G~icl~~l--~~~W~p~~~i~~il~~i~~ll~~p-~~~~p~n~ea  130 (199)
                      |||||+..+|.+|...+  .++|+|++||++||.+|+++|.+| |+++|.|+|.
T Consensus        82 ~HpnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~~e~  135 (139)
T d2a4da1          82 NMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG  135 (139)
T ss_dssp             CCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTT
T ss_pred             ccccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCCCCc
Confidence            99999987888988776  378999999999999999999997 7888998874

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=6.4e-37  Score=229.89  Aligned_cols=125  Identities=29%  Similarity=0.435  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEecCC---CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487          5 AAQRIKREFKEVIKSEEVAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH   81 (199)
Q Consensus         5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d---n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (199)
                      +.+||.+||++++++.  ++.++.+...++   |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++||
T Consensus         5 ~~~RL~kEl~~~~k~~--~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (136)
T d1jatb_           5 RNFRLLEELEKGEKGF--GPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL   82 (136)
T ss_dssp             HHHHHHHHHHHHHC------CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             hHHHHHHHHHHHhccC--CCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccc
Confidence            5789999999999863  345565555443   59999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCeeeccCc-hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHH
Q psy17487         82 PNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA  131 (199)
Q Consensus        82 PnV~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa  131 (199)
                      |||+..+|.||++++ .++|+|+++|.+||.+|+++|.+|+.....+++++
T Consensus        83 pnV~~~~G~icl~~l~~~~Wsp~~ti~~IL~~i~~lL~~P~n~~~~q~~~g  133 (136)
T d1jatb_          83 PCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEG  133 (136)
T ss_dssp             TTBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTT
T ss_pred             cccccCCCeEECCCCcccCcCccCcHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            999977899999998 47899999999999999999999876555544443

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.5e-21  Score=142.62  Aligned_cols=114  Identities=19%  Similarity=0.281  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEE--EEEeCCCCCCCCCccccccc-----cc
Q psy17487          8 RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVL--EIKVPETYPFNPPKVKFLTK-----IW   80 (199)
Q Consensus         8 RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~-----i~   80 (199)
                      ++.+|+.++.+.-....++..+...+|+...|.+.|.|+.+++|+||.|.+  .|.||.+||++||.|.|.+.     ++
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~   97 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKT   97 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccC
Confidence            455677777665333335666777888899999999999999999999998  66689999999999988753     68


Q ss_pred             cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCC
Q psy17487         81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP  122 (199)
Q Consensus        81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~  122 (199)
                      ||||+. +|+||+++|.+.|.+..++.+++..|+.+|.+..|
T Consensus        98 h~~V~~-~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~e~P  138 (141)
T d1s1qa_          98 GKHVDA-NGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP  138 (141)
T ss_dssp             SSSBCT-TCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSCS
T ss_pred             CCeECC-CCCCcchhhcCCCcccccHHHHHHHHHHHhCCCCC
Confidence            999995 99999999965445678999999999999997543

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.3e-18  Score=131.70  Aligned_cols=117  Identities=23%  Similarity=0.250  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcE---EEEEEEeCCCCCCCCCccccccc----
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGN---FVLEIKVPETYPFNPPKVKFLTK----   78 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~----   78 (199)
                      .+|+.+|...+.+.-........+...+|....+.+.+.|.-..+|+|+.   |.+.|.||++||+.||.|.|.++    
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~  100 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  100 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCS
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccc
Confidence            46788888888775322223444556667677888889998889999996   78889999999999999999765    


Q ss_pred             -------cccCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCC
Q psy17487         79 -------IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD  123 (199)
Q Consensus        79 -------i~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~  123 (199)
                             ++|||||. +|+||+++|.+.|.|+.++.++|..|+.+|.++.+|
T Consensus       101 ~~~~~~i~~hp~Vd~-~G~V~lp~L~~W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_         101 NTISSSLPIQEYIDS-NGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             CC----CGGGGGBCT-TSCBCCHHHHSCCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             cCCCcccccCCCCCC-CCcEehHHhcCCCCccCcHHHHHHHHHHHhcCCCCC
Confidence                   57999995 999999999766778999999999999999887543

>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.2e-10  Score=62.23  Aligned_cols=41  Identities=34%  Similarity=0.625  Sum_probs=38.8

Q ss_pred             CCcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        158 KNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      +.|++.++++++..|||+.+++++|||..+||+|-|.|.||
T Consensus         2 sspeyt~kidklca~gf~knavi~alsskswdvetatelll   42 (42)
T d3e46a1           2 SSPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLL   42 (42)
T ss_dssp             CCHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHccccccceeeeeccCccchhhHHHhhC
Confidence            46889999999999999999999999999999999999886

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.4e-09  Score=62.27  Aligned_cols=40  Identities=20%  Similarity=0.314  Sum_probs=38.5

Q ss_pred             cchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ++++..|++|++|||+++.|+.||+..+|+++.|+|.|||
T Consensus         2 ~~~e~~i~~L~~MGF~~~~a~~AL~~~~~N~e~A~~~LlS   41 (41)
T d1oqya1           2 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT   41 (41)
T ss_dssp             TTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             hhHHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            5789999999999999999999999999999999999997

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=98.38  E-value=2.2e-07  Score=53.16  Aligned_cols=37  Identities=32%  Similarity=0.591  Sum_probs=34.3

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ...|+++++|||+++.|+.||.+++|++++|+-.||.
T Consensus         5 ~~ai~eL~~MGF~e~~A~~AL~k~~wnleaAtN~LLd   41 (43)
T d2g3qa1           5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            4678999999999999999999999999999998873

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.4e-06  Score=54.98  Aligned_cols=41  Identities=15%  Similarity=0.225  Sum_probs=37.5

Q ss_pred             CcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      .+..++.|.+|++|||+++.|+.||..+++++++|++.||+
T Consensus        16 ~~~de~~v~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Lls   56 (63)
T d1wgna_          16 SPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA   56 (63)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            34557899999999999999999999999999999999984

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.98  E-value=3.6e-06  Score=54.60  Aligned_cols=39  Identities=28%  Similarity=0.389  Sum_probs=36.6

Q ss_pred             chHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        161 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ..+..|++|++|||+++.|+.||..+++++++|++.||+
T Consensus        28 ~~ee~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Ll~   66 (73)
T d1vg5a_          28 ASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS   66 (73)
T ss_dssp             CCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             cCHHHHHHHHHhCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            357899999999999999999999999999999999985

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.98  E-value=2.9e-06  Score=55.05  Aligned_cols=39  Identities=28%  Similarity=0.348  Sum_probs=36.4

Q ss_pred             chHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        161 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ..++.|+.|++|||++..|+.||..+++++++|++.||+
T Consensus        28 ~d~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~Av~~Lls   66 (73)
T d1wiva_          28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN   66 (73)
T ss_dssp             SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            347889999999999999999999999999999999984

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=3e-06  Score=60.99  Aligned_cols=99  Identities=24%  Similarity=0.351  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhc----CCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCc--EEEEEEEeCCCCCCCCCcccccccc
Q psy17487          6 AQRIKREFKEVIKS----EEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG--NFVLEIKVPETYPFNPPKVKFLTKI   79 (199)
Q Consensus         6 ~~RL~~E~~~l~~~----~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg--~f~~~i~fp~~YP~~pP~v~f~t~i   79 (199)
                      .+||..||..|.+.    .......+.++. +.+=+.|.+.---    .+.--  .|.+++.+|..||..||.|..-.--
T Consensus        27 ~~RLKEEy~aLI~Yv~nNK~~dndWF~les-n~~GT~W~GkCWy----ihnl~kYeFd~eFdIP~tYP~t~pEi~lPeLd  101 (162)
T d2in1a1          27 VQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWY----IHDLLKYEFDIEFDIPITYPTTAPEIAVPELD  101 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-CTTSSEEEEEEEE----EETTEEEEEEEEEECCTTTTTSCCCCBCGGGS
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCeeeceeeE----EEeeeEEEEEEEeccCCCCCCCCcceeccccC
Confidence            58999999998652    111233455553 3333455444331    01122  4556667799999999999763210


Q ss_pred             -ccCCccCCCCeeeccCc-hhhhh---hcccHHHHH
Q psy17487         80 -WHPNISSVTGAICLDIL-KDQWA---AAMTLRTVL  110 (199)
Q Consensus        80 -~HPnV~~~~G~icl~~l-~~~W~---p~~~i~~il  110 (199)
                       -..-.+ -+|+||++.. ..-|.   |.++|.+.|
T Consensus       102 GKTaKMY-RGGkIClt~HFkPLWarN~PkfGIaHal  136 (162)
T d2in1a1         102 GKTAKMY-RGGKICLTDHFKPLWARNVPKFGLAHLM  136 (162)
T ss_dssp             SSCSSSC-GGGBCCCCTTSHHHHHTTTTSCCHHHHH
T ss_pred             Cchhhhh-cCceeeccccchhhhhhcCCchhHHHHH
Confidence             001122 3899999987 67786   677888775

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.1e-05  Score=50.74  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=35.2

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      ++.|++|++|||++..|+.||...+.++++|++.||+
T Consensus        10 ~~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~~wL~~   46 (63)
T d1wjia_          10 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT   46 (63)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            7889999999999999999999999999999999973

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=5.1e-05  Score=45.49  Aligned_cols=38  Identities=24%  Similarity=0.313  Sum_probs=34.7

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHhhcCC-chHHHHHhhhC
Q psy17487        162 FDSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIFT  199 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~e~~~~  199 (199)
                      -+..+..|++|||+...|+.||...+. ++++|++-||+
T Consensus        12 ~~~~l~~L~~MGF~~~~a~~AL~~t~n~~ve~A~~WLl~   50 (51)
T d2cpwa1          12 HGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS   50 (51)
T ss_dssp             CCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence            466799999999999999999999888 89999999985

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00053  Score=42.25  Aligned_cols=41  Identities=20%  Similarity=0.366  Sum_probs=35.8

Q ss_pred             CcchHHHHHHHHhcCCChHHH-HHHHhhcCCchHHHHHhhhC
Q psy17487        159 NPDFDSKIQRLTDMGVMSHDA-RVALSTYNWELERATEAIFT  199 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +..|...+..|.+|||..+++ +.||...+.|+++|+|.||+
T Consensus        19 e~ry~~QL~qL~eMGF~d~~~Nl~AL~~t~Gdv~~Aie~Ll~   60 (61)
T d1veja1          19 EGRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG   60 (61)
T ss_dssp             TTTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            456889999999999965555 79999999999999999985

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.00023  Score=44.53  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=33.7

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcCC-chHHHHHhhhC
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIFT  199 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~e~~~~  199 (199)
                      ++.+++|++|||+++.|+.||...+- ++++|++.||+
T Consensus        10 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~   47 (64)
T d1whca_          10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLME   47 (64)
T ss_dssp             CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            56899999999999999999999976 79999999873

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.00062  Score=39.19  Aligned_cols=39  Identities=21%  Similarity=0.449  Sum_probs=33.4

Q ss_pred             chHHHHHHHHhcCCChHHH-HHHHhhcCCchHHHHHhhhC
Q psy17487        161 DFDSKIQRLTDMGVMSHDA-RVALSTYNWELERATEAIFT  199 (199)
Q Consensus       161 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~e~~~~  199 (199)
                      .|...+..|.+|||..+++ +.||..+++|+.+|+|.||+
T Consensus         4 ry~~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~   43 (44)
T d2bwba1           4 RYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   43 (44)
T ss_dssp             HTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHhC
Confidence            4677889999999955555 59999999999999999985

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00061  Score=40.27  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=34.2

Q ss_pred             CcchHHHHHHHHhcCCChH-HHHHHHhhcCCchHHHHHhhhC
Q psy17487        159 NPDFDSKIQRLTDMGVMSH-DARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       159 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +..|...+..|.+|||..+ ..+.||..++.|+++|+|.|++
T Consensus         5 e~ry~~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~   46 (50)
T d2dnaa1           5 EVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKS   46 (50)
T ss_dssp             HHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            3457788999999999555 5559999999999999999873

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00086  Score=38.02  Aligned_cols=37  Identities=24%  Similarity=0.446  Sum_probs=33.5

Q ss_pred             hHHHHHHHHhcCCChHHHH-HHHhhcCCchHHHHHhhh
Q psy17487        162 FDSKIQRLTDMGVMSHDAR-VALSTYNWELERATEAIF  198 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~e~~~  198 (199)
                      |.+.+..|.+|||..+... .||...+.++++|+|.|+
T Consensus         2 y~~QL~~L~~MGF~d~~~Ni~AL~~t~Gdv~~Aie~Ll   39 (41)
T d2daha1           2 FQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLR   39 (41)
T ss_dssp             SHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            6778999999999877776 999999999999999986

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0011  Score=39.47  Aligned_cols=34  Identities=26%  Similarity=0.218  Sum_probs=30.7

Q ss_pred             HHHHHHhcCCChHHHHHHHhhcC-CchHHHHHhhh
Q psy17487        165 KIQRLTDMGVMSHDARVALSTYN-WELERATEAIF  198 (199)
Q Consensus       165 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~e~~~  198 (199)
                      .+.+|++|||.+..|+.||...+ -++++|++-||
T Consensus         5 ~v~~L~~MGF~~~~a~~Al~~t~n~~ve~A~~Wl~   39 (51)
T d2crna1           5 LLEPLLAMGFPVHTALKALAATGRKTAEEALAWLH   39 (51)
T ss_dssp             SHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            48899999999999999999875 49999999887

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.38  E-value=0.0022  Score=42.05  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=33.4

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhc-CCchHHHHHhhhC
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTY-NWELERATEAIFT  199 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~e~~~~  199 (199)
                      +..|.+|++|||++..|+.||... +.++++|++.||+
T Consensus        30 ~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~   67 (84)
T d1veka_          30 EEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLS   67 (84)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            678999999999999999999886 4799999999873

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.018  Score=39.18  Aligned_cols=67  Identities=16%  Similarity=0.197  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeC-CC---CCCCCCcEEEEEEEeCCCCCCCCCccccccc
Q psy17487          9 IKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAG-PP---DTPYEGGNFVLEIKVPETYPFNPPKVKFLTK   78 (199)
Q Consensus         9 L~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~G-p~---~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   78 (199)
                      +..|+..|+.-   .+..+.+...++....+.+.|.- |.   +..-......+.+.||++||..+|.+.+.+.
T Consensus         6 ~~~EleaL~SI---Y~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1           6 LPSEVEVLESI---YLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             HHHHHHHHHHH---STTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHhH---CCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeecc
Confidence            56788888652   34455554444444444444432 11   1112234688999999999999999987654

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.81  E-value=0.012  Score=31.04  Aligned_cols=36  Identities=33%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhh
Q psy17487        162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAI  197 (199)
Q Consensus       162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~  197 (199)
                      +++++.++++|||+.-.+..||..-+.|++.|..-|
T Consensus         2 lnskiaqlvsmgfdpleaaqaldaangdldvaasfl   37 (38)
T d1z96a1           2 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL   37 (38)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             cchHHHHHHHcCCCHHHHHHHHhhhcCcHHHHHHhh
Confidence            578999999999999999999999999999876544

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.93  E-value=0.14  Score=35.40  Aligned_cols=70  Identities=17%  Similarity=0.108  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEecCC---Ccc--eeeEEEeCCC-CCCCCCcEEEEEEEeCCCCCCCCCccccccc
Q psy17487          6 AQRIKREFKEVIKSEEVAKCAIKLELIDD---NYT--ELKGEIAGPP-DTPYEGGNFVLEIKVPETYPFNPPKVKFLTK   78 (199)
Q Consensus         6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~d---n~~--~w~~~i~Gp~-~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   78 (199)
                      ..+-..|+..|.--   .+..+.+.....   ...  ...+.|.... +.......+.+.|.||.+||..+|.+.+...
T Consensus        12 ~E~Q~~EleaL~SI---Y~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~~   87 (137)
T d1ukxa_          12 SQRQDHELQALEAI---YGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA   87 (137)
T ss_dssp             HHHHHHHHHHHHHH---TSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE
T ss_pred             HHHHHHHHHHHHHH---cCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEecC
Confidence            44557788888542   223333322111   111  2333443211 2223445789999999999999999988654

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.13  E-value=0.075  Score=31.64  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             HHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        164 SKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       164 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      +.|++|.+. |..-.+|..||...+||++.|+|.|.
T Consensus         6 ~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~Lr   41 (56)
T d1xb2b1           6 ELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLH   41 (56)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            456666666 88899999999999999999999875

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.13  E-value=0.12  Score=30.41  Aligned_cols=35  Identities=29%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             HHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        164 SKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       164 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      ..|++|.+. |..-.+|..||...+||++.|+|.|.
T Consensus         6 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~Lr   41 (54)
T d1efub3           6 SLVKELRERTGAGMMDCKKALTEANGDIELAIENMR   41 (54)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            456666666 88899999999999999999999874

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.32  Score=33.51  Aligned_cols=67  Identities=10%  Similarity=0.163  Sum_probs=40.1

Q ss_pred             cEEEEEEEeCCCCCCCCCccccccccccCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q psy17487         54 GNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ  133 (199)
Q Consensus        54 g~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~  133 (199)
                      -.+.+.+.+|++||..+|.|...++                     |-+......+...+...+.+-....+.=-++...
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~~---------------------~l~~~~~~~l~~~l~~~~~e~~~Ge~mif~lv~~  126 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRSS---------------------ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQW  126 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEECS---------------------SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHH
T ss_pred             ceEEEEEEeCCCCCCCCCCceeecc---------------------ccCHHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            3578889999999999998865431                     2233445566666666665433333444444444


Q ss_pred             HhhCHHHH
Q psy17487        134 YKENPEMF  141 (199)
Q Consensus       134 ~~~d~~~f  141 (199)
                      .+++-..|
T Consensus       127 lqe~~~~~  134 (141)
T d2dawa1         127 LQDNSASY  134 (141)
T ss_dssp             HHHTTHHH
T ss_pred             HHHHHHHH
Confidence            44444433

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.58  E-value=0.16  Score=29.69  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=29.7

Q ss_pred             HHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        164 SKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       164 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      ..|++|.+. |..-.+|..||...++|++.|.|-|.
T Consensus         4 elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~Lr   39 (52)
T d1aipc1           4 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLR   39 (52)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            356666666 88999999999999999999998774

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.48  E-value=0.13  Score=33.49  Aligned_cols=41  Identities=27%  Similarity=0.558  Sum_probs=37.7

Q ss_pred             CCcchHHHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        158 KNPDFDSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       158 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      .++++..+|+.+.++ |-..+.|++||-.++-|+..|+..||
T Consensus        28 ~D~~i~~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lL   69 (91)
T d1wj7a1          28 NDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL   69 (91)
T ss_dssp             CCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHHHH
Confidence            477899999999999 88999999999999999999999887

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.25  Score=33.95  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=20.9

Q ss_pred             CCcEEEEEEEeCCCCCCCCCccccc
Q psy17487         52 EGGNFVLEIKVPETYPFNPPKVKFL   76 (199)
Q Consensus        52 ~gg~f~~~i~fp~~YP~~pP~v~f~   76 (199)
                      ....+.+.+.+|.+||..+|.|.+.
T Consensus        64 ~~~~l~L~~~lP~~YP~~~P~i~l~   88 (140)
T d2daxa1          64 KMAMFSLACILPFKYPAVLPEITVR   88 (140)
T ss_dssp             CEEEEEEEEEECSSTTSSCCCCEEE
T ss_pred             cCceEEEEEEecCcCCCcCCceecc
Confidence            3456889999999999999998764

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.00  E-value=0.22  Score=26.72  Aligned_cols=35  Identities=29%  Similarity=0.253  Sum_probs=29.8

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcC-CchHHHHHhh
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYN-WELERATEAI  197 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~e~~  197 (199)
                      ...+++++..|++.+-++-||...| -.+|+|+|++
T Consensus         3 RQMlqdl~~aG~D~~m~iral~qt~~rsieaaie~i   38 (41)
T d2cosa1           3 RQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYI   38 (41)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHH
Confidence            3567889999999999999999876 4689999986

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.83  E-value=0.27  Score=27.85  Aligned_cols=34  Identities=21%  Similarity=0.444  Sum_probs=29.1

Q ss_pred             HHHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHh
Q psy17487        163 DSKIQRLTDM-GVMSHDARVALSTYNWELERATEA  196 (199)
Q Consensus       163 ~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~  196 (199)
                      +..|.++++. |.+...|+.-|...+|+++.|+..
T Consensus         6 ~~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~   40 (46)
T d1v92a_           6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALAS   40 (46)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHH
Confidence            4567777776 899999999999999999999854

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-protein ligase ubc1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.71  E-value=0.34  Score=28.38  Aligned_cols=36  Identities=14%  Similarity=0.193  Sum_probs=29.3

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcCCc---------hHHHHHhhh
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYNWE---------LERATEAIF  198 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~~e~~~  198 (199)
                      ...|.++++|||.++-++.+|++.|-.         ....+|+||
T Consensus        10 ~~~V~~f~~mGF~rdKvI~VLrrlgik~~~~~~~~~~n~ilEELL   54 (55)
T d1ttea1          10 HDLIDEFESQGFEKDKIVEVLRRLGVKSLDPNDNNTANRIIEELL   54 (55)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHSCCSSCCSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHhCcCCCCcccchHHHHHHHHHh
Confidence            567899999999999999999998876         234557776

>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.84  E-value=0.23  Score=27.86  Aligned_cols=39  Identities=18%  Similarity=0.162  Sum_probs=32.4

Q ss_pred             cchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      ++....|++|.+.||+++.|+.|+-.+.=+-+-|-..||
T Consensus         2 ~ee~~aIeRL~~LGF~r~~viqay~ACdKNEelAaN~L~   40 (44)
T d1oqya2           2 PQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLL   40 (44)
T ss_dssp             TTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence            455778999999999999999999888877777766665

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.97  E-value=0.58  Score=27.37  Aligned_cols=39  Identities=10%  Similarity=0.144  Sum_probs=33.6

Q ss_pred             chHHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487        161 DFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIFT  199 (199)
Q Consensus       161 ~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~~  199 (199)
                      +.++.++.|.+|  +++.+.....|...+|+++.|+++||.
T Consensus        11 e~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~   51 (54)
T d1mn3a_          11 ERKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            456677888888  888888889999999999999999973

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=0.75  Score=27.37  Aligned_cols=36  Identities=14%  Similarity=0.256  Sum_probs=32.5

Q ss_pred             HHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487        163 DSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF  198 (199)
Q Consensus       163 ~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~  198 (199)
                      ++.++.|.+|  .++...+...|..++++++.|+++||
T Consensus        10 Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL   47 (59)
T d1wgla_          10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLL   47 (59)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            5568889998  88988888999999999999999997

>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: NEDD8 ultimate buster-1 (Nub1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.00  E-value=0.74  Score=28.79  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=31.2

Q ss_pred             HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhh
Q psy17487        163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAI  197 (199)
Q Consensus       163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~  197 (199)
                      ..+|.+|+-|||+.++|-.||+.-..++..|..-|
T Consensus        30 QesidqLvYMGF~~~~Ae~ALRvfrGnVQlAaQtL   64 (83)
T d1vega_          30 QESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTL   64 (83)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHhcccHHHHHHHH
Confidence            67899999999999999999999999998886443