Psyllid ID: psy17506

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MFGSSFGQASTSSAFGQSSFGKPAFSSPGFGATNNSLFGQTATQAPATSLFGGTQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAFGGFGGTTSGGGLFGQSTMFGQTNQAQPGTSSLFGGTTSAFGGAAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQATGSFFGTTPQPSMFGTNTSTAQPATSLFGIVTK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mfgssfgqastssafgqssfgkpafsspgfgatnnslfgqtatqapatslfggtqqqtttfgsglfgsqpqattsatsglfgnqqqpatnttgglfgasnttfgqskpafggfggttsggglfgqstmfgqtnqaqpgtsslfggttsafggaaatgttikfspvtgtdtmmrggssqtinTRHVCITCMKEyenksleelryedykanrkgpqqgtqatgsffgttpqpsmfgtntstaqpatslfgivtk
Flexible Loop (DISEMBL)
mfgssfgqastssafGQSSFGKPAFSSPGFGATNNSLFGQTATQAPATSLFGGTQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAFGGFGGTTSGGGLFGQSTMFGQTNQAQPGTSSLFGGTTSAFGGAAATGTTIKFSPVTGTDTmmrggssqtintrHVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQATGSFFGTTPQPSMFgtntstaqpatslfgivtk
Low Complexity Region (SEG)
MFGSSFGQASTSSAFGQSSFGKPAFSSPGFGATNNSLFGQTATQAPAtslfggtqqqtttfgsglfgsqPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAfggfggttsggglfgqstMFGQTNQAQPgtsslfggttsafggaaatgttIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQATGSFFGTTPQPSMFGTNTSTAQPATSLFGIVTK
Disordered region (IsUnstruct)
****************************************************************************************************************F**********************************SAFGGAAATGTTIKFSPVT************TINTRHVCITCMKEYEN*********************************************************
Disordered Region (DISOPRED)
MFG***************************************************************************************************************************************************************************************************************************************************F*****
Disordered Region (DISEMBL)
******************SFGKPAFSSPGFGATNNSLFGQTATQAPATSLFGGTQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAFGGFGGTTSGGGLFGQSTMFGQTNQAQPGTSSLFGGTTSAFGGAAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKA*********QATGSFFGTTPQPSMFGTNTSTAQPATSLFGIVTK
Disordered Region (DISPRO)
**********************************************************************************************************************************************************************************TINTRHVCITCMKEYENKSLEELRYEDYKAN*******************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFGSSFGQASTSSAFGQSSFGKPAFSSPGFGATNNSLFGQTATQAPATSLFGGTQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAFGGFGGTTSGGGLFGQSTMFGQTNQAQPGTSSLFGGTTSAFGGAAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQATGSFFGTTPQPSMFGTNTSTAQPATSLFGIVTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
P49793	1816	Nuclear pore complex prot	yes	N/A	0.706	0.098	0.464	4e-30
P52948	1817	Nuclear pore complex prot	yes	N/A	0.607	0.084	0.450	1e-29
G5EEH9	1678	Nuclear pore complex prot	yes	N/A	0.773	0.116	0.390	2e-25
Q02630	1113	Nucleoporin NUP116/NSP116	yes	N/A	0.515	0.116	0.365	2e-06
Q02629	959	Nucleoporin NUP100/NSP100	no	N/A	0.519	0.136	0.355	0.0004
P48837	541	Nucleoporin NUP57 OS=Sacc	no	N/A	0.25	0.116	0.457	0.0005
Q9UTK4	1778	Nucleoporin nup189 OS=Sch	yes	N/A	0.460	0.065	0.366	0.0008

>sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus GN=Nup98 PE=1 SV=2

 Score =  131 bits (330), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/224 (46%), Positives = 128/224 (57%), Gaps = 46/224 (20%)

Query: 24  AFSSPGFGATNNS--LFGQTATQAPATSLFGGTQQQTTTFGSGLFGSQPQATTSA----- 76
           AF +  FG++NN+  LFG + T+       GG       FG+  F SQP  +TS      
Sbjct: 36  AFGTSAFGSSNNTGGLFGNSQTKP------GGL------FGTSSF-SQPATSTSTGFGFG 82

Query: 77  -----TSGLFGNQQQPATNTTGGLFGASNTTFGQSKPA-FGGFGGTTSGGGLFGQ----S 126
                ++ LFG       NT   LF + N  F Q+KP  FG FG +TS GGLFG     S
Sbjct: 83  TSTGTSNSLFG-----TANTGTSLFSSQNNAFAQNKPTGFGNFGTSTSSGGLFGTTNTTS 137

Query: 127 TMFGQTNQAQPGTSSLFGGTTSAFGGAAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVC 186
             FG T      + SLFG   S+F  AA TGTTIKF+P TGTDTM++ G S  I+T+H C
Sbjct: 138 NPFGNT------SGSLFG--PSSFT-AAPTGTTIKFNPPTGTDTMVKAGVSTNISTKHQC 188

Query: 187 ITCMKEYENKSLEELRYEDYKANRKGPQQ--GTQATGSFFGTTP 228
           IT MKEYE+KSLEELR EDY+ANRKGPQ   G   T   FG++P
Sbjct: 189 ITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSP 232

Plays a role in the bidirectional transport across the nucleoporin complex (NPC). The repeat domain has a direct role in the transport.
Rattus norvegicus (taxid: 10116)

>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98 PE=1 SV=4

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/211 (45%), Positives = 115/211 (54%), Gaps = 58/211 (27%)

Query: 61  FGSGLFGSQPQATTSATSGLFGNQQ-------------QPATNTTGG------------- 94
           FG+  FGS     ++ T GLFGN Q             QPAT+T+ G             
Sbjct: 37  FGTSAFGS-----SNNTGGLFGNSQTKPGGLFGTSSFSQPATSTSTGFGFGTSTGTANTL 91

Query: 95  ---------LFGASNTTFGQSKPA-FGGFGGTTSGGGLFGQSTMFGQTNQAQPGTSSLFG 144
                    LF + N  F Q+KP  FG FG +TS GGLFG +            TS+ FG
Sbjct: 92  FGTASTGTSLFSSQNNAFAQNKPTGFGNFGTSTSSGGLFGTTNT----------TSNPFG 141

Query: 145 GTT-SAFGG----AAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLE 199
            T+ S FG     AA TGTTIKF+P TGTDTM++ G S  I+T+H CIT MKEYE+KSLE
Sbjct: 142 STSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLE 201

Query: 200 ELRYEDYKANRKGPQQ--GTQATGSFFGTTP 228
           ELR EDY+ANRKGPQ   G   T   FG++P
Sbjct: 202 ELRLEDYQANRKGPQNQVGAGTTTGLFGSSP 232

Nup98 and Nup96 play a role in the bidirectional transport across the nucleoporin complex (NPC). The repeat domain in Nup98 has a direct role in the transport.

Homo sapiens (taxid: 9606)

>sp|G5EEH9|NUP98_CAEEL Nuclear pore complex protein Nup98-Nup96 OS=Caenorhabditis elegans GN=npp-10 PE=2 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 124/246 (50%), Gaps = 51/246 (20%)

Query: 37  LFGQTATQAPATSLFGGTQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLF 96
           LFGQ A  +  T LFG  Q +       +FG+      S TS +FG+ QQP  N +  LF
Sbjct: 35  LFGQPANNSGTTGLFGAAQNKP---AGSIFGA-----ASNTSSIFGSPQQPQNNQSS-LF 85

Query: 97  GASNTTFGQSKPAFGGFGGTTSGGGLFGQSTMFGQTNQAQPGTSSLFGGTTSA------F 150
           G      GQ+      FG T+S       S++FG  N    GTSS+FG   +A      F
Sbjct: 86  GG-----GQNNANRSIFGSTSSAAP--ASSSLFG-NNANNTGTSSIFGSNNNAPSGGGLF 137

Query: 151 GGAAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANR 210
           G +  +GTT+KF P   +DTMMR G++QTI+T+H+CI+ M +Y+ KS+EELR EDY ANR
Sbjct: 138 GASTVSGTTVKFEPPISSDTMMRNGTTQTISTKHMCISAMSKYDGKSIEELRVEDYIANR 197

Query: 211 KGP-------------------QQGT---------QATGSFFGTTPQPSMFGTNTSTAQP 242
           K P                   Q G+         Q   S FG     S FG NTSTA  
Sbjct: 198 KAPGTGTTSTGGGLFGASNTTNQAGSSGLFGSSNAQQKTSLFGGASTSSPFGGNTSTANT 257

Query: 243 ATSLFG 248
            +SLFG
Sbjct: 258 GSSLFG 263

Nup98 and Nup96 play a role in the bidirectional transport across the nucleoporin complex (NPC). Has a role in P granule integrity; thought to promote the "liquid phase" of P granules by increasing the number of interacting RNA-protein complexes. Required for the accumulation of the nos-2 mRNA in P granules.

Caenorhabditis elegans (taxid: 6239)

>sp|Q02630|NU116_YEAST Nucleoporin NUP116/NSP116 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP116 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 78/167 (46%), Gaps = 37/167 (22%)

Query: 68  SQPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAFGGFGGTTSGG--GLFGQ 125
           +QP  +T +T G    QQQP  NT+   FG S  T     PAFG FG  TS    G+ G 
Sbjct: 14  TQPFGSTGSTFGGQQQQQQPVANTSA--FGLSQQTNTTQAPAFGNFGNQTSNSPFGMSGS 71

Query: 126 STM----FGQTNQAQPGTS-SLFGG---TTSAFGGAAAT------GTTIK-------FSP 164
           +T     FGQ+       S S+FGG    T+   G+A+       GT+IK         P
Sbjct: 72  TTANGTPFGQSQLTNNNASGSIFGGMGNNTALSAGSASVVPNSTAGTSIKPFTTFEEKDP 131

Query: 165 VTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRK 211
            TG   + +             ITCM EY N S EELR++DY+A RK
Sbjct: 132 TTGVINVFQ------------SITCMPEYRNFSFEELRFQDYQAGRK 166

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Active directional transport is assured by both, a Phe-Gly (FG) repeat affinity gradient for these transport factors across the NPC and a transport cofactor concentration gradient across the nuclear envelope (GSP1 and GSP2 GTPases associated predominantly with GTP in the nucleus, with GDP in the cytoplasm). NUP116 plays an important role in several nuclear export and import pathways including poly(A)+ RNA, tRNA, pre-ribosome, and protein transport.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP100 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 81/180 (45%), Gaps = 49/180 (27%)

Query: 35  NSLFGQTATQAPAT------SLFGGTQQQTTTFG-----------SGLFGSQPQATT--- 74
           NSLFG T      T      SLFG T+     FG           + LFG++P +TT   
Sbjct: 416 NSLFGTTNVPTSNTQSQQGNSLFGATKLTNMPFGGNPTANQSGSGNSLFGTKPASTTGSL 475

Query: 75  ----------SATSGLFGNQQQPATNTTG-GLFGASNTTFGQSKPAFGGFGGTTSGGGLF 123
                      +T+GLFGN    +T+TT  GLFGA   +  QSKPA         GGGLF
Sbjct: 476 FGNNTASTTVPSTNGLFGNNANNSTSTTNTGLFGAKPDS--QSKPAL--------GGGLF 525

Query: 124 GQSTMFGQT-NQAQPGTSSLFGGTTSAFGGAAATGTTIKFSPVTGTDTMMRGGSSQTINT 182
           G S     T  Q +P    +FGGTT   G   ATGT    S   G+   + G ++ T+N 
Sbjct: 526 GNSNSNSSTIGQNKP----VFGGTTQNTGLFGATGTN---SSAVGSTGKLFGQNNNTLNV 578

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Active directional transport is assured by both, a Phe-Gly (FG) repeat affinity gradient for these transport factors across the NPC and a transport cofactor concentration gradient across the nuclear envelope (GSP1 and GSP2 GTPases associated predominantly with GTP in the nucleus, with GDP in the cytoplasm). NUP100 plays an important role in several nuclear export and import pathways including poly(A)+ RNA and protein transport.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P48837|NUP57_YEAST Nucleoporin NUP57 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP57 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 20/83 (24%)

Query: 49  SLFGG--TQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGA---SNTTF 103
           SL GG  TQ  +     GLFG++PQ TT+ T GLFG++ Q +T T GGLFG+   +N T 
Sbjct: 158 SLMGGNSTQNTSNMNAGGLFGAKPQNTTATTGGLFGSKPQGST-TNGGLFGSGTQNNNTL 216

Query: 104 GQSKPAFGGFGGTTSGGGLFGQS 126
           G              GGGLFGQS
Sbjct: 217 G--------------GGGLFGQS 225

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Active directional transport is assured by both, a Phe-Gly (FG) repeat affinity gradient for these transport factors across the NPC and a transport cofactor concentration gradient across the nuclear envelope (GSP1 and GSP2 GTPases associated predominantly with GTP in the nucleus, with GDP in the cytoplasm). NUP57 plays an important role in several nuclear transport pathways including poly(A)+ RNA, tRNA, and pre-ribosome transport.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup189 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 67/150 (44%), Gaps = 34/150 (22%)

Query: 3   GSSFGQAS---TSSAFGQSSFGKPAFSSPGFGATN----NSLFGQTATQAPATSLFGGTQ 55
           G  FG AS   T+SAFG         S+P FGA+      +L G T    P    FG + 
Sbjct: 224 GRRFGNASSTNTTSAFG---------STPAFGASTTPFGQNLSGTTNNATP----FGTSN 270

Query: 56  QQTTTFGSGLFGSQP------------QATTSATSGLFGNQQQPATNTTGGLFGASNTTF 103
              TT GSGLFG                 T +A+ GLFG      +  + GLFG S  TF
Sbjct: 271 ATNTTPGSGLFGGGSAFGSNTTNTGFGSGTNNASGGLFGQNNNTTSTPSTGLFGGS--TF 328

Query: 104 GQSKPAFGGFGGTTSGGGLFGQSTMFGQTN 133
            Q KPAF GFG TT+       + +FG  N
Sbjct: 329 NQQKPAFSGFGSTTNTTNTGTGTGLFGSNN 358

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Active directional transport is assured by both, a Phe-Gly (FG) repeat affinity gradient for these transport factors across the NPC and a transport cofactor concentration gradient across the nuclear envelope.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
393911418	1471	hypothetical protein LOAG_04654 [Loa loa	0.777	0.133	0.465	1e-32
327289441	1603	PREDICTED: nuclear pore complex protein	0.849	0.133	0.433	4e-32
312075039	1468	hypothetical protein LOAG_04654 [Loa loa	0.769	0.132	0.466	4e-32
345489778	264	PREDICTED: nuclear pore complex protein	0.865	0.825	0.484	5e-32
242024600	1779	nuclear pore complex protein nup98, puta	0.829	0.117	0.44	6e-32
194745831	1960	GF18736 [Drosophila ananassae] gi|190628	0.888	0.114	0.447	3e-31
170591414	1597	Nucleoporin autopeptidase family protein	0.821	0.129	0.459	1e-30
157167277	1892	nuclear pore complex protein nup98 [Aede	0.928	0.123	0.427	1e-30
198452122	1981	GA10149 [Drosophila pseudoobscura pseudo	0.916	0.116	0.440	3e-30
301627510	1650	PREDICTED: nuclear pore complex protein	0.777	0.118	0.495	3e-30

>gi|393911418|gb|EFO23830.2| hypothetical protein LOAG_04654 [Loa loa]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/243 (46%), Positives = 143/243 (58%), Gaps = 47/243 (19%)

Query: 20  FGKPAFSSP---GFGATNNSLFGQTATQAPATSLFGGTQQQTTTFG-SGLFGSQPQATTS 75
           FGK  FSS     FGA++ SLFG +A + P       T Q T  FG   +FGS  Q+T+ 
Sbjct: 2   FGKSPFSSSNTSAFGASS-SLFGSSANRPPTGFGTQTTTQSTGLFGQKSIFGSPGQSTS- 59

Query: 76  ATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAFGG--------FGGTTSGGGLFGQST 127
               LFG+ Q  ++        AS + FGQSKP FG         FGGTTS         
Sbjct: 60  ----LFGSTQPTSS--------ASTSIFGQSKPLFGASSTTQPTSFGGTTS--------- 98

Query: 128 MFGQTNQAQPGTSSLFGGTTSAFGGAAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCI 187
           +FG    AQ  T  +FG   S FG +  +GTT+KF P T TDTM+R G++QTI+T+H+CI
Sbjct: 99  LFGSAQSAQ-QTGGVFG---SGFGTSTISGTTVKFEPPTSTDTMLRNGTNQTISTKHMCI 154

Query: 188 TCMKEYENKSLEELRYEDYKANRKGPQQGTQATGSFFGTTPQP--SMFGTNTSTAQPATS 245
           T MK+YENKSLEELR +DY ANRKGPQ G    G  FG T QP  S+FG++T+T Q  +S
Sbjct: 155 TAMKQYENKSLEELRCDDYLANRKGPQSG----GLVFGQTSQPSSSLFGSSTNTTQ--SS 208

Query: 246 LFG 248
           +FG
Sbjct: 209 IFG 211

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|327289441|ref|XP_003229433.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like, partial [Anolis carolinensis]

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 120/277 (43%), Positives = 149/277 (53%), Gaps = 63/277 (22%)

Query: 1   MFGSSFGQA--STSSAFGQSSFGKPAFSSPGFGATNNSLFGQTATQAPATSLFGGTQQQT 58
           MF  SFG      +  FG S+FG+ A    GFG T+   FG        TS FG      
Sbjct: 1   MFNKSFGTPFGGNTGGFGASTFGQNA----GFGTTSGGAFG--------TSAFGSNNNTG 48

Query: 59  TTFGS------GLFGS----QPQATTSAT-----------SGLFGNQQQPATNTTGGLFG 97
             FGS      GLFGS    QP  ++++T           +GLFG       +T GGLF 
Sbjct: 49  GLFGSAQTKPGGLFGSSTFSQPATSSTSTGFGFGTSTGTSTGLFGT-----ASTGGGLFS 103

Query: 98  ASNTTFGQSKPA-FGGFGGTTSGGGLFGQSTMFGQTNQAQPGTSSLFGGTT-SAFGGA-- 153
           + N  F Q+KP  FG FG +TS GGLFG +            TS+ FGGT+ S FG A  
Sbjct: 104 SQNNAFAQNKPVGFGNFGTSTSSGGLFGTTNT----------TSNPFGGTSGSLFGSASF 153

Query: 154 --AATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRK 211
               TGTTIKF+P TGTDTM++ G S  I+T+H CIT MKEYE+KSLEELR EDY+ANRK
Sbjct: 154 TAVPTGTTIKFNPPTGTDTMVKSGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRK 213

Query: 212 GPQQGTQATGSFFGTTPQPSMFGTNTSTAQPATSLFG 248
           GP     A  +       P +FG++ +T+  AT LFG
Sbjct: 214 GPTNPVGAVAA-------PGLFGSSPATSSAATGLFG 243

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|312075039|ref|XP_003140239.1| hypothetical protein LOAG_04654 [Loa loa]

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/242 (46%), Positives = 142/242 (58%), Gaps = 48/242 (19%)

Query: 20  FGKPAFSSP---GFGATNNSLFGQTATQAPATSLFGGTQQQTTTFG-SGLFGSQPQATTS 75
           FGK  FSS     FGA++ SLFG +A + P       T Q T  FG   +FGS  Q+T+ 
Sbjct: 2   FGKSPFSSSNTSAFGASS-SLFGSSANRPPTGFGTQTTTQSTGLFGQKSIFGSPGQSTS- 59

Query: 76  ATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAFGGFGGTTSGGGLFGQSTMFGQTNQA 135
               LFG+ Q  ++        AS + FGQSKP FG    T        Q T FG     
Sbjct: 60  ----LFGSTQPTSS--------ASTSIFGQSKPLFGASSTT--------QPTSFG----- 94

Query: 136 QPGTSSLFGGTTSA------FGGAA-ATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCIT 188
             GT+SLFG   SA      FG A+  +GTT+KF P T TDTM+R G++QTI+T+H+CIT
Sbjct: 95  --GTTSLFGSAQSAQQTGGVFGSASTISGTTVKFEPPTSTDTMLRNGTNQTISTKHMCIT 152

Query: 189 CMKEYENKSLEELRYEDYKANRKGPQQGTQATGSFFGTTPQP--SMFGTNTSTAQPATSL 246
            MK+YENKSLEELR +DY ANRKGPQ G    G  FG T QP  S+FG++T+T Q  +S+
Sbjct: 153 AMKQYENKSLEELRCDDYLANRKGPQSG----GLVFGQTSQPSSSLFGSSTNTTQ--SSI 206

Query: 247 FG 248
           FG
Sbjct: 207 FG 208

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|345489778|ref|XP_003426227.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like [Nasonia vitripennis]

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 128/264 (48%), Positives = 155/264 (58%), Gaps = 46/264 (17%)

Query: 6   FGQASTSSAFGQSSFGK--PAFS-----SPGFGATNNSLFGQTATQAPATSLFGGTQQQT 58
           F  A+ +S FGQS+FGK  P  S      P FG+ N SLF      +    LFG T   T
Sbjct: 12  FNAAAQNSPFGQSAFGKTIPTTSFGTTAPPVFGS-NTSLFNSKPNGSGPGGLFGNTTT-T 69

Query: 59  TTFGS--------GLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGASNTT--FGQ-SK 107
            TFGS        G FG+     TS T+ LFG+QQ   TN    LFG +N+T  FGQ +K
Sbjct: 70  PTFGSNSATSSSFGGFGN-----TSTTTPLFGSQQNANTN----LFGTTNSTSTFGQTNK 120

Query: 108 PAFGGFGGTTSGGGLFGQSTM-------FGQTNQAQPGTSSLFGGTTSAFGGAAA----T 156
           P   GFG +T G GLFGQ+         FGQ+N   P  + LFG +TS FGG  +    T
Sbjct: 121 PTTFGFGQST-GAGLFGQTQQTIQQSTPFGQSNA--PSNTGLFG-STSGFGGTNSVNNMT 176

Query: 157 GTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQG 216
           GT +KFSPVTGTDTM++ G++QTI+TRH CITCMKEYE+KSLEELR EDY A RKG  QG
Sbjct: 177 GTLVKFSPVTGTDTMVKNGTTQTISTRHHCITCMKEYESKSLEELRLEDYTAGRKGAVQG 236

Query: 217 TQATGSFFGTTPQPSMFGTNTSTA 240
             +T   FGT  Q + F T  S +
Sbjct: 237 QPST--MFGTLTQGTPFSTVVSNS 258

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024600|ref|XP_002432715.1| nuclear pore complex protein nup98, putative [Pediculus humanus corporis] gi|212518191|gb|EEB19977.1| nuclear pore complex protein nup98, putative [Pediculus humanus corporis]

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 121/275 (44%), Positives = 152/275 (55%), Gaps = 66/275 (24%)

Query: 1   MFGSSFGQAST------------SSAFGQS-SFGKPA---FSSPGFGAT-NNSLFGQTAT 43
           MF  +FGQ +T            ++ FGQ+  FGK     F+ P FGA+ + SLF  T +
Sbjct: 1   MFKPTFGQTNTTPGFGAFAGTANANPFGQTPVFGKTTNTGFAPPTFGASGSTSLFSNTLS 60

Query: 44  QAPA-------TSLFGGTQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLF 96
            + +       T  FG  Q    +FG   FG+ PQ TT+    LF  QQ    N   GLF
Sbjct: 61  SSGSLFGSSTNTPTFGQAQTTQPSFG---FGTTPQPTTN----LFSAQQ----NAGSGLF 109

Query: 97  GASNTT-FGQSKPAFGGFGGTTSGGGLFGQSTMFGQTNQAQPG--TSSLFGGTTSA---- 149
           G+  T+ FG +KP FG   GT +  GLFG           QP   ++SLFG TT+     
Sbjct: 110 GSGTTSAFGANKPPFGSAFGTGTNTGLFGAQ---------QPAQTSTSLFGQTTATTGTG 160

Query: 150 --------FGGA-AATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEE 200
                   FG +   TGT IKF+PVTGTD++++ G SQT+NTRH CITCMKEYE+KSLEE
Sbjct: 161 LFGGTTSTFGASNQQTGTVIKFNPVTGTDSLLKNGVSQTVNTRHFCITCMKEYESKSLEE 220

Query: 201 LRYEDYKANRKGPQQGTQATGSFFGT-TPQPSMFG 234
           LR EDY ANRKGPQQ      + FGT T QPS+FG
Sbjct: 221 LRLEDYMANRKGPQQ-----SNLFGTPTQQPSLFG 250

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194745831|ref|XP_001955388.1| GF18736 [Drosophila ananassae] gi|190628425|gb|EDV43949.1| GF18736 [Drosophila ananassae]

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 128/286 (44%), Positives = 154/286 (53%), Gaps = 62/286 (21%)

Query: 9   ASTSSAFGQSSFGKPAFSSPGFGATNN--------SLFGQTATQA-PATSLFGG------ 53
           A+ S+ FGQS+FGKPA  +P FG+T+         SLFG  AT A PA  LFG       
Sbjct: 24  ANASTPFGQSAFGKPA--APAFGSTSTFAAQPAQPSLFGAAATPAQPAGGLFGAGTSSAF 81

Query: 54  ---TQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGASNT-TFGQSKPA 109
              T  Q +TFG+    SQPQ T    S +FG  Q   T +   LFG S    FG +KP 
Sbjct: 82  GSNTTAQPSTFGAF---SQPQQT----SNIFGTTQAAPTTS---LFGQSTLPAFGAAKPG 131

Query: 110 FGGFGGTTSGG---GLFGQSTM------FGQTNQAQPGTSSLFG-GTTSAF--------- 150
              FG   +      LFGQ         FG   QA P T+S+FG GT SAF         
Sbjct: 132 ITAFGQAATAQPTTSLFGQPAAATSTSGFGSFGQAAPATTSVFGSGTASAFAQPQAAGVA 191

Query: 151 GGAAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANR 210
           GG  A     K+ P  GTDT+M+ G    +NT+  CIT MKEYE KSLEELR EDY ++R
Sbjct: 192 GGVNAGTAVAKYQPTIGTDTLMKSGQPNNVNTKQHCITAMKEYELKSLEELRMEDYLSSR 251

Query: 211 KGPQQGTQATGSF-FGT---TP-QP---SMFGTNTSTAQPATSLFG 248
           KGPQ G+ A G+F FG+   TP QP   S+FG   STAQP+T LFG
Sbjct: 252 KGPQAGS-APGAFGFGSQVATPAQPAATSLFG---STAQPSTGLFG 293

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170591414|ref|XP_001900465.1| Nucleoporin autopeptidase family protein [Brugia malayi] gi|158592077|gb|EDP30679.1| Nucleoporin autopeptidase family protein [Brugia malayi]

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 142/237 (59%), Gaps = 30/237 (12%)

Query: 15  FGQSSFGKPAFSSPGFGATNNSLFGQTATQAPATSLFGGTQQQTTTFG-SGLFGSQPQAT 73
           FG+S FG    S+ G G+   SLFG +  +         T Q T  FG   +FGS  Q+T
Sbjct: 2   FGKSPFGSSNTSAFGAGS---SLFGSSTNRPTTGFGTQTTTQSTGLFGQKSIFGSPGQST 58

Query: 74  TSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAFGGFGGTTSGGGLFGQSTMFGQTN 133
           +     LFG+ Q PA++       AS + FGQSKP FG    TT      G +++FG   
Sbjct: 59  S-----LFGSAQ-PASS-------ASTSIFGQSKPLFGA-SSTTQSTSFAGTTSLFGSAQ 104

Query: 134 QAQPGTSSLFGGTTSAFGGAAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEY 193
             Q  T  +FG   S+FG +  +GTT+KF P T TDTM+R G++QTI+T+H+CIT MK+Y
Sbjct: 105 STQ-QTGGVFG---SSFGTSNISGTTLKFEPPTSTDTMLRNGTNQTISTKHMCITAMKQY 160

Query: 194 ENKSLEELRYEDYKANRKGPQQGTQATGSFFGTTPQP--SMFGTNTSTAQPATSLFG 248
           E KSLEELR EDY ANRKGPQ G    G  FG T QP  S+FG++T+TAQ  +S+FG
Sbjct: 161 ETKSLEELRCEDYLANRKGPQSG----GLVFGQTSQPSSSLFGSSTTTAQ--SSVFG 211

Source: Brugia malayi

Species: Brugia malayi

Genus: Brugia

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|157167277|ref|XP_001658483.1| nuclear pore complex protein nup98 [Aedes aegypti] gi|108876474|gb|EAT40699.1| AAEL007586-PA [Aedes aegypti]

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 123/288 (42%), Positives = 153/288 (53%), Gaps = 54/288 (18%)

Query: 2   FGSSFGQA-STSSAFGQSS-FGKPAF-----SSPGFGA-TNNSLFGQTATQAPATSLFGG 53
           FGS+FG   +T+S FGQ+S FGKPA      ++P FG     SLFGQT  Q  A  LFG 
Sbjct: 18  FGSTFGSTTATASPFGQTSTFGKPATTGAFGATPAFGQQATPSLFGQT--QPAAGGLFGA 75

Query: 54  TQQQTTTFGS--------GLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGASN--TTF 103
           +      FG+        G FG   Q TTS    LFG Q   A +T+  LFG +N  + F
Sbjct: 76  STTAAPAFGAPATTQSGFGAFGQPQQQTTS----LFGTQNNTAPSTS--LFGTNNNNSAF 129

Query: 104 GQSKPA-FGGFGGTTSGGGLFGQST--------MFGQTNQAQPGTSSLFGGTTSAFGGAA 154
           G +KPA FGGFG   +   LFGQ++         FGQT Q    +  LFG    AFGG A
Sbjct: 130 GAAKPAGFGGFGQPAAQTSLFGQASTSQTTTGGFFGQTAQ----SGGLFGAQKPAFGGVA 185

Query: 155 ATGT-----TIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKAN 209
             G        K+     TDT+++ G + T+ T+  CIT MKEYENKS+EELR EDY+AN
Sbjct: 186 PIGAGNGTAVAKYQQTASTDTLVKNGQTTTVQTKQHCITFMKEYENKSVEELRIEDYQAN 245

Query: 210 RKGPQQGTQATGSFFGTTPQP---------SMFGTNTSTAQPATSLFG 248
           RKGPQ G           P P         S+FG  T+T+QP+T LFG
Sbjct: 246 RKGPQAGAAGGFFGAQPAPTPFGAQATQPQSLFG-QTTTSQPSTGLFG 292

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198452122|ref|XP_001358641.2| GA10149 [Drosophila pseudoobscura pseudoobscura] gi|198131796|gb|EAL27782.2| GA10149 [Drosophila pseudoobscura pseudoobscura]

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 127/288 (44%), Positives = 155/288 (53%), Gaps = 57/288 (19%)

Query: 5   SFGQASTSSAFGQSSFGKPAFSSPGFGATNN--------SLFGQTATQA-PATSLFGGTQ 55
           SF   + ++ FGQS+FGKPA  +P FG T+         SLFG  AT A PA  +FG + 
Sbjct: 20  SFSNTAATTPFGQSAFGKPA--APAFGNTSTFAAQPAQPSLFGAAATPAQPAGGMFGAST 77

Query: 56  QQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGASNTT-FGQSK-PAFGGF 113
                  S  FGS   A TS   G F   QQPA N  G    ASNT+ FGQ+  PAFG  
Sbjct: 78  -------SSAFGSTGAAPTSF--GAFSQPQQPA-NIFGSTPAASNTSLFGQAATPAFGAA 127

Query: 114 GGTTSGGGLFGQ-------STMFGQTN------------QAQPGTSSLFG-GTTSAFG-- 151
              T G   FGQ       S++FGQT             QA P T+++FG GT SAF   
Sbjct: 128 KPATLGMTAFGQTPAAQPTSSLFGQTAAATSASAFGSFGQAAPTTTNVFGSGTASAFAQP 187

Query: 152 --GAAATGT-----TIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYE 204
             GA A+G        K+ P  GTDT+M+GG   +++T+  CIT MKEYE KSLEELR E
Sbjct: 188 QPGAVASGVNPGSAVAKYQPTMGTDTLMKGGQPNSVSTKQHCITAMKEYELKSLEELRME 247

Query: 205 DYKANRKGPQQGTQATGSF-FG---TTPQPSMFGTNTSTAQPATSLFG 248
           DY ++RKGPQ G+  TG+F FG   T  QP   G   ST QP+  LFG
Sbjct: 248 DYLSSRKGPQAGS-TTGAFGFGSAATAAQPPASGLFGSTVQPSAGLFG 294

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301627510|ref|XP_002942917.1| PREDICTED: nuclear pore complex protein Nup98-Nup96 [Xenopus (Silurana) tropicalis]

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/228 (49%), Positives = 136/228 (59%), Gaps = 32/228 (14%)

Query: 2   FGSSFGQAS----TSSAFGQSS-FG---KPAFSSPGFGATNNS---LFGQTATQAPATSL 50
           FGS FG  +     +S FGQ++ FG     AF S GFG TN S   LFG T T+     L
Sbjct: 6   FGSPFGTGNGAFGATSTFGQTTGFGTTPATAFGSAGFG-TNTSTGGLFGNTQTKP--GGL 62

Query: 51  FGGTQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPA- 109
           FG T        S   G    A+T  T+ LFG     +TNT  GLF   +  FGQ+KP  
Sbjct: 63  FGSTTFNQPATSSSSSGFGFGASTGTTNSLFG-----STNTGSGLFATQSNAFGQAKPTT 117

Query: 110 FGGFGGTTSGGGLFGQSTMFGQTNQAQP---GTSSLFGGTTSAFGGAAATGTTIKFSPVT 166
           FG FG +TS GGLFG       TN A P    ++SLFG +T +   AA TGTTIKF+P +
Sbjct: 118 FGNFGTSTSTGGLFGN------TNTANPFGGASASLFGASTFS---AAPTGTTIKFNPPS 168

Query: 167 GTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQ 214
           GTDTM +GG +  I+T+H CIT MKEYE+KSLEELR EDY+ANRKGPQ
Sbjct: 169 GTDTMAKGGVTTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQ 216

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
UNIPROTKB|E1BYU8	1731	NUP98 "Uncharacterized protein	0.916	0.133	0.388	2e-31
ZFIN|ZDB-GENE-040426-1180	1807	nup98 "nucleoporin 98" [Danio	0.932	0.130	0.384	2.4e-30
UNIPROTKB|E1BCV4	1816	NUP98 "Uncharacterized protein	0.896	0.124	0.345	7.7e-30
UNIPROTKB|E2R4V6	1800	NUP98 "Uncharacterized protein	0.896	0.125	0.345	1.2e-29
UNIPROTKB|J3KP29	1638	NUP98 "Nuclear pore complex pr	0.896	0.137	0.349	1.5e-29
UNIPROTKB|P52948	1817	NUP98 "Nuclear pore complex pr	0.896	0.124	0.349	2e-29
RGD|71033	1816	Nup98 "nucleoporin 98" [Rattus	0.896	0.124	0.345	8.7e-28
WB|WBGene00003796	1678	npp-10 [Caenorhabditis elegans	0.904	0.135	0.346	2e-24
UNIPROTKB|G5EEH9	1678	npp-10 "Nuclear pore complex p	0.904	0.135	0.346	2e-24
FB|FBgn0039120	1960	Nup98-96 "Nucleoporin 98-96kD"	0.912	0.117	0.352	1.3e-23

UNIPROTKB|E1BYU8 NUP98 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 360 (131.8 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 101/260 (38%), Positives = 126/260 (48%)

Query:     2 FGSSFGQAS---TSSAFGQSS-FGKP---AFSSPGFGATNNS--LFGQTATQAPAXXXXX 52
             FG+ FG  +   T+S FGQ++ FG     AF +  FGA NN+  LFG T  QA       
Sbjct:     6 FGTPFGGNTGFGTTSTFGQNAGFGTTGGGAFGTSAFGANNNTGGLFGNT--QAKPGGLFS 63

Query:    53 XXXXXXXXXXXXXXXXXPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAXXX 112
                                 +T  +S LFG      T+T GGLF + +  F QSKPA   
Sbjct:    64 SNAFNQPATSSTSTGFGFGTSTGTSSSLFGT-----TSTGGGLFSSQSNAFAQSKPAGFG 118

Query:   113 XXXXXXXXXXXXXXXMFGQTNQ-AQPXXXXXXXXXXXXXXXXXXXXXXIKFSPVTGTDTM 171
                            +FG TN  + P                      IKF+P TGTD+M
Sbjct:   119 NFGTSTSSGG-----LFGTTNTTSNPFGNPSGSLFGPTSFTATPTGTTIKFNPPTGTDSM 173

Query:   172 MRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQATGSFFGTTPQPS 231
             ++ G S TINT+H CIT MKEYE+KSLEELR EDY ANRKGP     A G+   TT    
Sbjct:   174 VKSGVSTTINTKHQCITAMKEYESKSLEELRLEDYMANRKGPSNPVGA-GA---TT---G 226

Query:   232 MFGTNTSTAQPATSLFGIVT 251
             +FGT+T+T+  AT LFG  T
Sbjct:   227 LFGTSTATSSTATGLFGSST 246

GO:0005643 "nuclear pore" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

ZFIN|ZDB-GENE-040426-1180 nup98 "nucleoporin 98" [Danio rerio (taxid:7955)]

 Score = 350 (128.3 bits), Expect = 2.4e-30, P = 2.4e-30
 Identities = 100/260 (38%), Positives = 118/260 (45%)

Query:     2 FGSSFGQASTSSAFGQ--SSFGK-PA-FSSPGFGATNNS--LFGQTATQAPAXXXXXXXX 55
             FG   G   TSS FGQ  S FG  P  F S  FG TNN+  LFG T  + P         
Sbjct:    10 FGGGTGGFGTSSTFGQPNSGFGATPGGFGSSAFGTTNNTGGLFGNTQNK-PGGLFGSSTF 68

Query:    56 XXXXXXXXXXXXXXPQATTSATSGLFGNQQQPATNTTGG-LFGASNTTFGQSKPAXXXXX 114
                             AT+  ++ LFG+     TNT GG LF   N  FG +KPA     
Sbjct:    69 SQPVTSSTSSGFGFG-ATSGTSNSLFGS-----TNTGGGGLFSQQNNAFGANKPAAFGNF 122

Query:   115 XXXXXXXXXXXXXMFGQTNQAQ-PXXXXXXXXXXXXXXXXXXXXXXIKFSPVTGTDTMMR 173
                          +FG TN A  P                      IKF+P TG+DTM++
Sbjct:   123 GTSTSSGG-----LFGTTNTASNPFGGTSGSLFGSSSFTAAPPGTTIKFNPPTGSDTMVK 177

Query:   174 GGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQA--TGSFFGTT-PQP 230
             GG + +INT+H CIT MKEYENKSLEELR EDY+A RKGP     A  TG  FG   P  
Sbjct:   178 GGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPSNLPMAAGTGGLFGAAAPAT 237

Query:   231 SMFGTNT-STAQPATSL-FG 248
                GT    ++ P T   FG
Sbjct:   238 PSTGTGLFGSSAPNTGFNFG 257

GO:0005643 "nuclear pore" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E1BCV4 NUP98 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 323 (118.8 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
 Identities = 87/252 (34%), Positives = 119/252 (47%)

Query:     2 FGSSFGQASTSSAFGQSS-FGKP---AFSSPGFGATNNS--LFGQTATQAPAXXXXXXXX 55
             FG   G   T+S FGQ++ FG     AF +  FG++NN+  LFG + T+ P         
Sbjct:    10 FGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNNTGGLFGNSQTK-PGGLFGTNSF 68

Query:    56 XXXXXXXXXXXXXXPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAXXXXXX 115
                              +T  ++ LFG     +T T+  LF + N  F Q+KP       
Sbjct:    69 SQPATSTSTGFGFG--TSTGTSNSLFGTA---STGTS--LFSSQNNAFAQNKPTGFGNFG 121

Query:   116 XXXXXXXXXXXXMFGQTNQ-AQPXXXXXXXXXXXXXXXXXXXXXXIKFSPVTGTDTMMRG 174
                         +FG TN  + P                      IKF+P TGTDTM++ 
Sbjct:   122 TSTSSGG-----LFGTTNTTSNPFGSTSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKA 176

Query:   175 GSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQ--GTQATGSFFGTTPQPS- 231
             G S  I+T+H CIT MKEYE+KSLEELR EDY+ANRKGPQ   G   T   FG++P  S 
Sbjct:   177 GVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSPATSS 236

Query:   232 ---MFGTNTSTA 240
                +F ++T+ +
Sbjct:   237 ATGLFSSSTTNS 248

GO:0006260 "DNA replication" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|E2R4V6 NUP98 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 325 (119.5 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 87/252 (34%), Positives = 119/252 (47%)

Query:     2 FGSSFGQASTSSAFGQSS-FGKP---AFSSPGFGATNNS--LFGQTATQAPAXXXXXXXX 55
             FG   G   T+S FGQ++ FG     AF +  FG++NN+  LFG + T+ P         
Sbjct:    10 FGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNNTGGLFGNSQTK-PGGLFGTNSF 68

Query:    56 XXXXXXXXXXXXXXPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAXXXXXX 115
                              +T  ++ LFG     +T T+  LF + N  F Q+KP       
Sbjct:    69 SQPATSTSTGFGFG--TSTGTSNSLFGTA---STGTS--LFSSQNNAFAQNKPTGFGNFG 121

Query:   116 XXXXXXXXXXXXMFGQTNQ-AQPXXXXXXXXXXXXXXXXXXXXXXIKFSPVTGTDTMMRG 174
                         +FG TN  + P                      IKF+P TGTDTM++ 
Sbjct:   122 TSTSSGG-----LFGTTNTTSNPFGSTSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKA 176

Query:   175 GSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQ--GTQATGSFFGTTPQPS- 231
             G S  I+T+H CIT MKEYE+KSLEELR EDY+ANRKGPQ   G   T   FG++P  S 
Sbjct:   177 GVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTAGLFGSSPATSS 236

Query:   232 ---MFGTNTSTA 240
                +F ++T+ +
Sbjct:   237 ATGLFSSSTTNS 248

GO:0006810 "transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|J3KP29 NUP98 "Nuclear pore complex protein Nup98-Nup96" [Homo sapiens (taxid:9606)]

 Score = 322 (118.4 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
 Identities = 88/252 (34%), Positives = 118/252 (46%)

Query:     2 FGSSFGQASTSSAFGQSS-FGKP---AFSSPGFGATNNS--LFGQTATQAPAXXXXXXXX 55
             FG   G   T+S FGQ++ FG     AF +  FG++NN+  LFG + T+ P         
Sbjct:    10 FGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNNTGGLFGNSQTK-PGGLFGTSSF 68

Query:    56 XXXXXXXXXXXXXXPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAXXXXXX 115
                               T+ T  LFG     +T T+  LF + N  F Q+KP       
Sbjct:    69 SQPATSTSTGFGFGTSTGTANT--LFGTA---STGTS--LFSSQNNAFAQNKPTGFGNFG 121

Query:   116 XXXXXXXXXXXXMFGQTNQ-AQPXXXXXXXXXXXXXXXXXXXXXXIKFSPVTGTDTMMRG 174
                         +FG TN  + P                      IKF+P TGTDTM++ 
Sbjct:   122 TSTSSGG-----LFGTTNTTSNPFGSTSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKA 176

Query:   175 GSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQ--GTQATGSFFGTTPQPS- 231
             G S  I+T+H CIT MKEYE+KSLEELR EDY+ANRKGPQ   G   T   FG++P  S 
Sbjct:   177 GVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSPATSS 236

Query:   232 ---MFGTNTSTA 240
                +F ++T+ +
Sbjct:   237 ATGLFSSSTTNS 248

GO:0005643 "nuclear pore" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|P52948 NUP98 "Nuclear pore complex protein Nup98-Nup96" [Homo sapiens (taxid:9606)]

 Score = 322 (118.4 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
 Identities = 88/252 (34%), Positives = 118/252 (46%)

Query:     2 FGSSFGQASTSSAFGQSS-FGKP---AFSSPGFGATNNS--LFGQTATQAPAXXXXXXXX 55
             FG   G   T+S FGQ++ FG     AF +  FG++NN+  LFG + T+ P         
Sbjct:    10 FGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNNTGGLFGNSQTK-PGGLFGTSSF 68

Query:    56 XXXXXXXXXXXXXXPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAXXXXXX 115
                               T+ T  LFG     +T T+  LF + N  F Q+KP       
Sbjct:    69 SQPATSTSTGFGFGTSTGTANT--LFGTA---STGTS--LFSSQNNAFAQNKPTGFGNFG 121

Query:   116 XXXXXXXXXXXXMFGQTNQ-AQPXXXXXXXXXXXXXXXXXXXXXXIKFSPVTGTDTMMRG 174
                         +FG TN  + P                      IKF+P TGTDTM++ 
Sbjct:   122 TSTSSGG-----LFGTTNTTSNPFGSTSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKA 176

Query:   175 GSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQ--GTQATGSFFGTTPQPS- 231
             G S  I+T+H CIT MKEYE+KSLEELR EDY+ANRKGPQ   G   T   FG++P  S 
Sbjct:   177 GVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSPATSS 236

Query:   232 ---MFGTNTSTA 240
                +F ++T+ +
Sbjct:   237 ATGLFSSSTTNS 248

GO:0019048 "virus-host interaction" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0005643 "nuclear pore" evidence=IDA;NAS

GO:0031965 "nuclear membrane" evidence=IDA

GO:0031080 "nuclear pore outer ring" evidence=NAS;IDA

GO:0006999 "nuclear pore organization" evidence=NAS

GO:0000059 "protein import into nucleus, docking" evidence=NAS

GO:0006913 "nucleocytoplasmic transport" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0017056 "structural constituent of nuclear pore" evidence=IMP;NAS

GO:0006260 "DNA replication" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IDA;TAS

GO:0000776 "kinetochore" evidence=IDA

GO:0034399 "nuclear periphery" evidence=IDA

GO:0042405 "nuclear inclusion body" evidence=IDA

GO:0044615 "nuclear pore nuclear basket" evidence=IDA

GO:0051292 "nuclear pore complex assembly" evidence=IMP

GO:0005215 "transporter activity" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

RGD|71033 Nup98 "nucleoporin 98" [Rattus norvegicus (taxid:10116)]

 Score = 326 (119.8 bits), Expect = 8.7e-28, P = 8.7e-28
 Identities = 87/252 (34%), Positives = 117/252 (46%)

Query:     2 FGSSFGQASTSSAFGQSS-FGKP---AFSSPGFGATNNS--LFGQTATQAPAXXXXXXXX 55
             FG   G   T+S FGQ++ FG     AF +  FG++NN+  LFG + T+ P         
Sbjct:    10 FGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNNTGGLFGNSQTK-PGGLFGTSSF 68

Query:    56 XXXXXXXXXXXXXXPQATTSATSGLFGNQQQPATNTTGGLFGASNTTFGQSKPAXXXXXX 115
                              +T  ++ LFG       NT   LF + N  F Q+KP       
Sbjct:    69 SQPATSTSTGFGFG--TSTGTSNSLFGT-----ANTGTSLFSSQNNAFAQNKPTGFGNFG 121

Query:   116 XXXXXXXXXXXXMFGQTNQ-AQPXXXXXXXXXXXXXXXXXXXXXXIKFSPVTGTDTMMRG 174
                         +FG TN  + P                      IKF+P TGTDTM++ 
Sbjct:   122 TSTSSGG-----LFGTTNTTSNPFGNTSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKA 176

Query:   175 GSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQ--GTQATGSFFGTTPQPS- 231
             G S  I+T+H CIT MKEYE+KSLEELR EDY+ANRKGPQ   G   T   FG++P  S 
Sbjct:   177 GVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSPATSS 236

Query:   232 ---MFGTNTSTA 240
                +F ++T+ +
Sbjct:   237 ATGLFSSSTTNS 248

GO:0000059 "protein import into nucleus, docking" evidence=IMP

GO:0000776 "kinetochore" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005635 "nuclear envelope" evidence=ISO

GO:0005643 "nuclear pore" evidence=IEA;ISO;ISS;IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0006260 "DNA replication" evidence=IEA;ISO

GO:0006810 "transport" evidence=IEA

GO:0017056 "structural constituent of nuclear pore" evidence=ISO;ISS

GO:0031080 "nuclear pore outer ring" evidence=ISO;ISS

GO:0031965 "nuclear membrane" evidence=ISO;ISS;IDA

GO:0034399 "nuclear periphery" evidence=ISO;ISS;IDA

GO:0042277 "peptide binding" evidence=IDA

GO:0042405 "nuclear inclusion body" evidence=ISO;IDA

GO:0044615 "nuclear pore nuclear basket" evidence=ISO;IDA

GO:0051028 "mRNA transport" evidence=IEA

GO:0051292 "nuclear pore complex assembly" evidence=ISO;ISS

WB|WBGene00003796 npp-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 294 (108.6 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 90/260 (34%), Positives = 111/260 (42%)

Query:     1 MFGS--SFGQASTSSAFGQSSFGKPAFSSPGFGATNNSLFGQTATQAPAXXXXXXXXXXX 58
             MFG   SFG    SS+FG  S G   F        N  LFGQ A  +             
Sbjct:     1 MFGQNKSFG----SSSFGGGSSGSGLFGQNNQNNQNKGLFGQPANNSGTTGLFGAAQNKP 56

Query:    59 XXXXXXXXXXXPQATTSATSGLFGNQQQPATNTT----GGLFGASNTTFGQ-SKPAXXXX 113
                             S TS +FG+ QQP  N +    GG   A+ + FG  S  A    
Sbjct:    57 AGSIF--------GAASNTSSIFGSPQQPQNNQSSLFGGGQNNANRSIFGSTSSAAPASS 108

Query:   114 XXXXXXXXXXXXXXMFGQTNQAQPXXXXXXXXXXXXXXXXXXXXXXIKFSPVTGTDTMMR 173
                           +FG  N A P                      +KF P   +DTMMR
Sbjct:   109 SLFGNNANNTGTSSIFGSNNNA-PSGGGLFGASTVSGTT-------VKFEPPISSDTMMR 160

Query:   174 GGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQATGS-FFG---TTPQ 229
              G++QTI+T+H+CI+ M +Y+ KS+EELR EDY ANRK P  GT +TG   FG   TT Q
Sbjct:   161 NGTTQTISTKHMCISAMSKYDGKSIEELRVEDYIANRKAPGTGTTSTGGGLFGASNTTNQ 220

Query:   230 PSMFGT-NTSTAQPATSLFG 248
                 G   +S AQ  TSLFG
Sbjct:   221 AGSSGLFGSSNAQQKTSLFG 240

GO:0005643 "nuclear pore" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040039 "inductive cell migration" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0006997 "nucleus organization" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0043186 "P granule" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

UNIPROTKB|G5EEH9 npp-10 "Nuclear pore complex protein Nup98-Nup96" [Caenorhabditis elegans (taxid:6239)]

 Score = 294 (108.6 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 90/260 (34%), Positives = 111/260 (42%)

Query:     1 MFGS--SFGQASTSSAFGQSSFGKPAFSSPGFGATNNSLFGQTATQAPAXXXXXXXXXXX 58
             MFG   SFG    SS+FG  S G   F        N  LFGQ A  +             
Sbjct:     1 MFGQNKSFG----SSSFGGGSSGSGLFGQNNQNNQNKGLFGQPANNSGTTGLFGAAQNKP 56

Query:    59 XXXXXXXXXXXPQATTSATSGLFGNQQQPATNTT----GGLFGASNTTFGQ-SKPAXXXX 113
                             S TS +FG+ QQP  N +    GG   A+ + FG  S  A    
Sbjct:    57 AGSIF--------GAASNTSSIFGSPQQPQNNQSSLFGGGQNNANRSIFGSTSSAAPASS 108

Query:   114 XXXXXXXXXXXXXXMFGQTNQAQPXXXXXXXXXXXXXXXXXXXXXXIKFSPVTGTDTMMR 173
                           +FG  N A P                      +KF P   +DTMMR
Sbjct:   109 SLFGNNANNTGTSSIFGSNNNA-PSGGGLFGASTVSGTT-------VKFEPPISSDTMMR 160

Query:   174 GGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQATGS-FFG---TTPQ 229
              G++QTI+T+H+CI+ M +Y+ KS+EELR EDY ANRK P  GT +TG   FG   TT Q
Sbjct:   161 NGTTQTISTKHMCISAMSKYDGKSIEELRVEDYIANRKAPGTGTTSTGGGLFGASNTTNQ 220

Query:   230 PSMFGT-NTSTAQPATSLFG 248
                 G   +S AQ  TSLFG
Sbjct:   221 AGSSGLFGSSNAQQKTSLFG 240

GO:0015031 "protein transport" evidence=NAS

GO:0051028 "mRNA transport" evidence=NAS

GO:0005643 "nuclear pore" evidence=NAS

GO:0030719 "P granule organization" evidence=IMP

GO:0043186 "P granule" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

FB|FBgn0039120 Nup98-96 "Nucleoporin 98-96kD" [Drosophila melanogaster (taxid:7227)]

 Score = 287 (106.1 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 94/267 (35%), Positives = 115/267 (43%)

Query:     5 SFGQASTSSA--FGQSSFGK---PAFSSPG-FGATNNSLFGQTATQAPAXXXXXXXXXXX 58
             +FG  ST +A    QS FG    PA  + G FGA  ++ FG TAT  P            
Sbjct:    42 AFGNTSTFAAQPAQQSLFGAAATPAQPAGGLFGANTSTGFGSTATAQPTAFGAFSQPQQT 101

Query:    59 XXXXXXXXXXXPQATTSATSGLFGNQQQPA------TNTTGGLFGASNTT---FGQSKPA 109
                            T+A++ LFG    PA      T T  G   A+  T   FGQ   A
Sbjct:   102 SNIFGSTQ-------TAASTSLFGQSTLPAFGAAKPTMTAFGQTAAAQPTGSLFGQPAAA 154

Query:   110 XXXXXXXXXXXXXXXXXXMFGQTNQ---AQPXXXXXXXXXXXXXXXXXXXXXXIKFSPVT 166
                               +FG       AQP                       K+ P  
Sbjct:   155 TSTTGFGGFGTSAPTTTNVFGSGTASAFAQPQATAVGASGVNTGTAVA------KYQPTI 208

Query:   167 GTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQATGSF-FG 225
             GTDT+M+ G + ++NT+  CIT MKE+E KSLEELR EDY   RKGPQ G  A G+F FG
Sbjct:   209 GTDTLMKSGQANSVNTKQHCITAMKEFEGKSLEELRLEDYMCGRKGPQAGN-APGAFGFG 267

Query:   226 ---TTP-QPSMFGTNTSTAQPATSLFG 248
                T P QP+  G   STAQP+T LFG
Sbjct:   268 AQVTQPAQPASGGLFGSTAQPSTGLFG 294

GO:0005643 "nuclear pore" evidence=ISS;IPI

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005487 "nucleocytoplasmic transporter activity" evidence=ISS

GO:0044613 "nuclear pore central transport channel" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0007184 "SMAD protein import into nucleus" evidence=IMP

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
KOG0845|consensus	903		97.6
PF13634	113	Nucleoporin_FG: Nucleoporin FG repeat region	97.41
PF13634	113	Nucleoporin_FG: Nucleoporin FG repeat region	97.1
KOG3091|consensus	508		95.86
KOG3091|consensus	508		95.31
KOG1428|consensus	3738		90.27

>KOG0845|consensus

Probab=97.60  E-value=0.0006  Score=71.44  Aligned_cols=84  Identities=49%  Similarity=0.844  Sum_probs=67.0

Q ss_pred             CCCcccccCcccccCCccccCccccCCCcCccccceeeeeecccccccChhhhhhHHHHhcCCCCCCCCCCCCcccccCC
Q psy17506        149 AFGGAAATGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRKGPQQGTQATGSFFGTTP  228 (252)
Q Consensus       149 ~fG~~~~~GTav~f~p~~~~d~~~~~~i~~nis~~~qSIT~Mp~y~~~S~EELR~eDY~~grKg~~~g~~~~~~~fg~~~  228 (252)
                      .|+.+.+.++.+  .|...+|++.+.+...++...++||..|.+|+.+++|++|.+||..+ +.+..+..-.. +||+..
T Consensus       114 ~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~fg~~~  189 (903)
T KOG0845|consen  114 LFGSATPAGTTV--NPGFGTSTTMKFGVSNTISTKHICITAPGAYTTKGLEGLRLEDYMAG-KGPGFGSGNTG-LFGSSP  189 (903)
T ss_pred             cccccccccccc--cCCccccccccccccCCccceeeeccCcccccccccccccccccccc-cCccccCCCcc-cccccc
Confidence            455445566666  88888899999999999999999999999999999999999999999 88844443334 888744


Q ss_pred             ----CCCCCCCCC
Q psy17506        229 ----QPSMFGTNT  237 (252)
Q Consensus       229 ----~~~~fg~~~  237 (252)
                          .. +||+..
T Consensus       190 ~~~~~~-~fg~s~  201 (903)
T KOG0845|consen  190 ATSSST-LFGSSK  201 (903)
T ss_pred             CCcccc-cccccC
Confidence                24 787764

>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region

Probab=97.41  E-value=0.0011  Score=53.57  Aligned_cols=8  Identities=88%  Similarity=1.485  Sum_probs=3.8

Q ss_pred             CCccCCcc
Q psy17506        120 GGLFGQST  127 (252)
Q Consensus       120 gglFG~~~  127 (252)
                      ++|||+..
T Consensus        87 ~~lFG~~~   94 (113)
T PF13634_consen   87 GGLFGQSQ   94 (113)
T ss_pred             CcccCCCC
Confidence            34555543

>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region

Probab=97.10  E-value=0.0039  Score=50.41  Aligned_cols=63  Identities=38%  Similarity=0.690  Sum_probs=26.6

Q ss_pred             CCccCCcc---CCCcccccccccCc-cccccccccCCCCC-CCCCcCcCCCCCCCC-CCCCCcccccCC
Q psy17506         36 SLFGQTAT---QAPATSLFGGTQQQ-TTTFGSGLFGSQPQ-ATTSATSGLFGNQQQ-PATNTTGGLFGA   98 (252)
Q Consensus        36 ~lFG~~~~---~~~~gglFG~~~~~-~~~~gfg~fg~~~~-~~~~~~~~lFG~~~~-~~~~~~gGLFG~   98 (252)
                      +|||....   ....++|||+.... ......+|||.... .......+|||.... ......++|||+
T Consensus        24 ~lFG~~~~~~~~~~~~~LFG~~~~~~~~~~~~~LFG~~~~~~~~~~~~~lFG~~~~~~~~~~~~~lFG~   92 (113)
T PF13634_consen   24 SLFGSSTPQTTSTSSGSLFGSTSTQTQATTTGGLFGSSNNTQQQPSSGSLFGSTTATQQATPSGGLFGQ   92 (113)
T ss_pred             CCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcccCCCCCCCCcCCCCcccCC
Confidence            56665431   11235566654431 22333445553221 122334556665431 112223566664

>KOG3091|consensus

Probab=95.86  E-value=0.093  Score=52.37  Aligned_cols=19  Identities=26%  Similarity=0.518  Sum_probs=9.2

Q ss_pred             cCCCccCCccCCCccccccccc
Q psy17506         34 NNSLFGQTATQAPATSLFGGTQ   55 (252)
Q Consensus        34 ~~~lFG~~~~~~~~gglFG~~~   55 (252)
                      ++++||..+.   .+++||...
T Consensus        49 Tt~~fG~~~~---g~~~fG~~~   67 (508)
T KOG3091|consen   49 TTGLFGANQA---GGTGFGTAS   67 (508)
T ss_pred             cccccccccC---CCCCccCCC
Confidence            3456665442   244566433

>KOG3091|consensus

Probab=95.31  E-value=0.056  Score=53.89  Aligned_cols=55  Identities=33%  Similarity=0.616  Sum_probs=24.5

Q ss_pred             CCccCCcc-CCCcccccccccCccccccccccCCCCCCCCCcCcCCCCCCCCCCCCCcccccCCC
Q psy17506         36 SLFGQTAT-QAPATSLFGGTQQQTTTFGSGLFGSQPQATTSATSGLFGNQQQPATNTTGGLFGAS   99 (252)
Q Consensus        36 ~lFG~~~~-~~~~gglFG~~~~~~~~~gfg~fg~~~~~~~~~~~~lFG~~~~~~~~~~gGLFG~~   99 (252)
                      ++||..+. ...+.+|||.+..     ++++||.. .. ..+.+++||...+.+  .++|+||+.
T Consensus        37 ~~fgs~p~~~taTt~~fG~~~~-----g~~~fG~~-~~-~~~~gs~~~~s~~t~--~g~g~fgs~   92 (508)
T KOG3091|consen   37 GAFGSQPTTGTATTGLFGANQA-----GGTGFGTA-ST-GTAAGSGFGTSTATG--AGGGFFGSQ   92 (508)
T ss_pred             cccccCCCCCCccccccccccC-----CCCCccCC-CC-CcccccccccCCccC--CccCccccc
Confidence            45654432 1223566774432     44455421 11 122333666543322  346777753

>KOG1428|consensus

Probab=90.27  E-value=0.076  Score=59.07  Aligned_cols=34  Identities=41%  Similarity=0.574  Sum_probs=30.1

Q ss_pred             cceeeeeecccccccChhhhhhHHHHhcCCCCCC
Q psy17506        182 TRHVCITCMKEYENKSLEELRYEDYKANRKGPQQ  215 (252)
Q Consensus       182 ~~~qSIT~Mp~y~~~S~EELR~eDY~~grKg~~~  215 (252)
                      .+|+.|+.||.|+++|+||||+.....+|....-
T Consensus      2065 aRYiaIt~M~vYeNYS~EElRf~~~~~k~~se~m 2098 (3738)
T KOG1428|consen 2065 ARYIAITMMKVYENYSFEELRFASPTPKRPSENM 2098 (3738)
T ss_pred             hhhhhhhhhhhhhcccHhhhcccCCCcccccccc
Confidence            4889999999999999999999998888877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	252
3mmy_B	56	Structural And Functional Analysis Of The Interacti		1e-16

>pdb|3MMY|B Chain B, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 56

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 160 IKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRK 211
           IKF+P TGTDTM++ G S  I+T+H CIT MKEYE+KSLEELR EDY+ANRK
Sbjct: 5   IKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRK 56
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
3mmy_B	56	Nuclear pore complex protein NUP98; mRNA export, n	9e-24

>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 56

 Score = 89.7 bits (222), Expect = 9e-24
 Identities = 41/56 (73%), Positives = 48/56 (85%)

Query: 156 TGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRK 211
           TGTTIKF+P TGTDTM++ G S  I+T+H CIT MKEYE+KSLEELR EDY+ANRK
Sbjct: 1   TGTTIKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRK 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
3mmy_B	56	Nuclear pore complex protein NUP98; mRNA export, n	99.85

>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.85  E-value=1.4e-22  Score=143.70  Aligned_cols=56  Identities=73%  Similarity=1.098  Sum_probs=49.6

Q ss_pred             cCcccccCCccccCccccCCCcCccccceeeeeecccccccChhhhhhHHHHhcCC
Q psy17506        156 TGTTIKFSPVTGTDTMMRGGSSQTINTRHVCITCMKEYENKSLEELRYEDYKANRK  211 (252)
Q Consensus       156 ~GTav~f~p~~~~d~~~~~~i~~nis~~~qSIT~Mp~y~~~S~EELR~eDY~~grK  211 (252)
                      +||+|||+|+.++|+|++++.+.++.+++|||++||+|++||+|||||+||+++||
T Consensus         1 ~gt~vkf~p~~~tdt~~~~g~~~~~~~~~qsIs~M~~Y~~~S~EELR~eDY~~grk   56 (56)
T 3mmy_B            1 TGTTIKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRK   56 (56)
T ss_dssp             CCSCSCCCCCEEEEEC-----CCEEEEEECCGGGSTTTTTSCHHHHHHHHHHTTCC
T ss_pred             CCccccccccccccchhhcCCCCccceeEEEEecchhhhcCCHHHHHHHHHHccCC
Confidence            58999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00