Psyllid ID: psy17510
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 113 | 2.2.26 [Sep-21-2011] | |||||||
| P26990 | 175 | ADP-ribosylation factor 6 | yes | N/A | 0.991 | 0.64 | 0.982 | 6e-62 | |
| P62332 | 175 | ADP-ribosylation factor 6 | yes | N/A | 0.991 | 0.64 | 0.973 | 1e-61 | |
| Q007T5 | 175 | ADP-ribosylation factor 6 | yes | N/A | 0.991 | 0.64 | 0.973 | 1e-61 | |
| P62331 | 175 | ADP-ribosylation factor 6 | yes | N/A | 0.991 | 0.64 | 0.973 | 1e-61 | |
| P62330 | 175 | ADP-ribosylation factor 6 | yes | N/A | 0.991 | 0.64 | 0.973 | 1e-61 | |
| P40946 | 175 | ADP-ribosylation factor 3 | yes | N/A | 1.0 | 0.645 | 0.955 | 2e-60 | |
| P51645 | 175 | ADP-ribosylation factor 6 | N/A | N/A | 0.991 | 0.64 | 0.955 | 2e-60 | |
| P49076 | 181 | ADP-ribosylation factor O | N/A | N/A | 0.973 | 0.607 | 0.690 | 2e-43 | |
| Q9Y7Z2 | 184 | ADP-ribosylation factor 6 | yes | N/A | 1.0 | 0.614 | 0.690 | 2e-43 | |
| Q94650 | 181 | ADP-ribosylation factor 1 | yes | N/A | 0.964 | 0.602 | 0.697 | 3e-43 |
| >sp|P26990|ARF6_CHICK ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 235 bits (599), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 110/112 (98%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATT DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNYK 174
|
GTP-binding protein involved in protein trafficking; regulates endocytic recycling and cytoskeleton remodeling. May modulate vesicle budding and uncoating within the Golgi apparatus. May contribute to the regulation of dendritic branching, filopodia extension and dendritic spine development. Gallus gallus (taxid: 9031) |
| >sp|P62332|ARF6_RAT ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
|
GTP-binding protein involved in protein trafficking; regulates endocytic recycling and cytoskeleton remodeling. May modulate vesicle budding and uncoating within the Golgi apparatus Contributes to the regulation of dendritic branching and filopodia extension (By similarity). Involved in the regulation of dendritic spine development. Rattus norvegicus (taxid: 10116) |
| >sp|Q007T5|ARF6_PIG ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
|
GTP-binding protein involved in protein trafficking; regulates endocytic recycling and cytoskeleton remodeling. May modulate vesicle budding and uncoating within the Golgi apparatus. Contributes to the regulation of dendritic branching, filopodia extension and dendritic spine development. Sus scrofa (taxid: 9823) |
| >sp|P62331|ARF6_MOUSE ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
|
GTP-binding protein involved in protein trafficking; regulates endocytic recycling and cytoskeleton remodeling. May modulate vesicle budding and uncoating within the Golgi apparatus Contributes to the regulation of dendritic branching and filopodia extension (By similarity). Involved in the regulation of dendritic spine development. Mus musculus (taxid: 10090) |
| >sp|P62330|ARF6_HUMAN ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
|
GTP-binding protein involved in protein trafficking; regulates endocytic recycling and cytoskeleton remodeling. May modulate vesicle budding and uncoating within the Golgi apparatus. Functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in the regulation of dendritic spine development (By similarity). Contributes to the regulation of dendritic branching and filopodia extension. Homo sapiens (taxid: 9606) |
| >sp|P40946|ARF3_DROME ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/113 (95%), Positives = 109/113 (96%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR ELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGL EGL WLTSNHKL
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLTSNHKL 175
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Drosophila melanogaster (taxid: 7227) |
| >sp|P51645|ARF6_XENLA ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 109/112 (97%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDC DRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA + DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLTSNYK 174
|
GTP-binding protein involved in protein trafficking; regulates endocytic recycling and cytoskeleton remodeling. May modulate vesicle budding and uncoating within the Golgi apparatus. May contribute to the regulation of dendritic branching, filopodia extension and dendritic spine development. Xenopus laevis (taxid: 8355) |
| >sp|P49076|ARF_MAIZE ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 93/110 (84%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDLP+AM EI +KLGL +R R+WY+Q +CATT +GLYEGL WL+SN
Sbjct: 127 KQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSN 176
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Zea mays (taxid: 4577) |
| >sp|Q9Y7Z2|ARF6_SCHPO ADP-ribosylation factor 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arf6 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 93/113 (82%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+TGT+GLIFVVD AD +RI EARQELHRII+DREMRD ++L+ AN
Sbjct: 71 DVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLAN 130
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQDLP A+ P +I + L L +++DR W VQP+CA T DGL EGL WL+ N KL
Sbjct: 131 KQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAKL 183
|
GTP-binding protein that functions as a molecular switch for the activation of 'new end take off' (NETO), a process in which the directions of cell growth change from a monopolar manner to a bipolar manner in fission yeast. Involved in supplying membrane to the growing new end. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q94650|ARF1_PLAFA ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 76/109 (69%), Positives = 92/109 (84%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYY+ T GLIFVVD DR+RID+AR+ELHR+IN+ E++DAIIL+FAN
Sbjct: 67 DVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
KQDLP+AM E+ EKL L IR+RNW++Q +CAT DGLYEG WLT+
Sbjct: 127 KQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTT 175
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Plasmodium falciparum (taxid: 5833) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 113 | ||||||
| 322785548 | 180 | hypothetical protein SINV_14695 [Solenop | 1.0 | 0.627 | 0.991 | 2e-61 | |
| 340721293 | 175 | PREDICTED: ADP-ribosylation factor 6-lik | 1.0 | 0.645 | 0.991 | 3e-61 | |
| 291403824 | 507 | PREDICTED: mCG3164-like [Oryctolagus cun | 0.991 | 0.220 | 0.973 | 4e-61 | |
| 301773242 | 370 | PREDICTED: hypothetical protein LOC10047 | 0.991 | 0.302 | 0.973 | 6e-61 | |
| 242009948 | 175 | ADP-ribosylation factor, putative [Pedic | 1.0 | 0.645 | 0.982 | 7e-61 | |
| 170057334 | 175 | conserved hypothetical protein [Culex qu | 1.0 | 0.645 | 0.982 | 7e-61 | |
| 307192533 | 175 | ADP-ribosylation factor 6 [Harpegnathos | 0.991 | 0.64 | 0.991 | 8e-61 | |
| 357629652 | 175 | hypothetical protein KGM_17559 [Danaus p | 1.0 | 0.645 | 0.973 | 1e-60 | |
| 157107947 | 175 | adp-ribosylation factor, arf [Aedes aegy | 1.0 | 0.645 | 0.973 | 1e-60 | |
| 91076080 | 175 | PREDICTED: similar to ADP-ribosylation f | 1.0 | 0.645 | 0.973 | 2e-60 |
| >gi|322785548|gb|EFZ12210.1| hypothetical protein SINV_14695 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/113 (99%), Positives = 112/113 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 68 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 127
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATT DGLYEGLTWLTSNHKL
Sbjct: 128 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNHKL 180
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340721293|ref|XP_003399058.1| PREDICTED: ADP-ribosylation factor 6-like [Bombus terrestris] gi|345498024|ref|XP_003428126.1| PREDICTED: ADP-ribosylation factor 6-like isoform 2 [Nasonia vitripennis] gi|345498026|ref|XP_001603804.2| PREDICTED: ADP-ribosylation factor 6-like isoform 1 [Nasonia vitripennis] gi|350406774|ref|XP_003487878.1| PREDICTED: ADP-ribosylation factor 6-like [Bombus impatiens] gi|380019019|ref|XP_003693415.1| PREDICTED: ADP-ribosylation factor 6-like [Apis florea] gi|383847271|ref|XP_003699278.1| PREDICTED: ADP-ribosylation factor 6-like [Megachile rotundata] gi|307169171|gb|EFN61987.1| ADP-ribosylation factor 6 [Camponotus floridanus] gi|332017829|gb|EGI58489.1| ADP-ribosylation factor 6 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/113 (99%), Positives = 112/113 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATT DGLYEGLTWLTSNHKL
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNHKL 175
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|291403824|ref|XP_002718343.1| PREDICTED: mCG3164-like [Oryctolagus cuniculus] | Back alignment and taxonomy information |
|---|
Score = 238 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 395 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 454
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 455 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 506
|
Source: Oryctolagus cuniculus Species: Oryctolagus cuniculus Genus: Oryctolagus Family: Leporidae Order: Lagomorpha Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|301773242|ref|XP_002922050.1| PREDICTED: hypothetical protein LOC100473890 [Ailuropoda melanoleuca] | Back alignment and taxonomy information |
|---|
Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats.
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 258 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 317
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 318 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 369
|
Source: Ailuropoda melanoleuca Species: Ailuropoda melanoleuca Genus: Ailuropoda Family: Ursidae Order: Carnivora Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|242009948|ref|XP_002425743.1| ADP-ribosylation factor, putative [Pediculus humanus corporis] gi|212509647|gb|EEB13005.1| ADP-ribosylation factor, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 237 bits (604), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 111/113 (98%), Positives = 112/113 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMR+AIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMREAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATT DGLYEGLTWLTSNHKL
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNHKL 175
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170057334|ref|XP_001864438.1| conserved hypothetical protein [Culex quinquefasciatus] gi|94469094|gb|ABF18396.1| ADP-ribosylation factor 6 [Aedes aegypti] gi|167876760|gb|EDS40143.1| conserved hypothetical protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 237 bits (604), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 111/113 (98%), Positives = 112/113 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQDLP+AMKPHEIQEKLGLTRIRDRNWYVQPSCATT DGLYEGLTWLTSNHKL
Sbjct: 123 KQDLPEAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNHKL 175
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307192533|gb|EFN75721.1| ADP-ribosylation factor 6 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 237 bits (604), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 111/112 (99%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATT DGLYEGLTWLTSNHK
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNHK 174
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357629652|gb|EHJ78283.1| hypothetical protein KGM_17559 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 110/113 (97%), Positives = 112/113 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLT+NHKL
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTTNHKL 175
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157107947|ref|XP_001650010.1| adp-ribosylation factor, arf [Aedes aegypti] gi|108879449|gb|EAT43674.1| AAEL004913-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 110/113 (97%), Positives = 112/113 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD+IILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDSIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQDLP+AMKPHEIQEKLGLTRIRDRNWYVQPSCATT DGLYEGLTWLTSNHKL
Sbjct: 123 KQDLPEAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNHKL 175
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91076080|ref|XP_967713.1| PREDICTED: similar to ADP-ribosylation factor 6 [Tribolium castaneum] gi|270014695|gb|EFA11143.1| hypothetical protein TcasGA2_TC004744 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/113 (97%), Positives = 112/113 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQDLP+AMKPHEIQEKLGLTRIRDRNWYVQP+CATT DGLYEGLTWLTSNHKL
Sbjct: 123 KQDLPEAMKPHEIQEKLGLTRIRDRNWYVQPACATTGDGLYEGLTWLTSNHKL 175
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 113 | ||||||
| UNIPROTKB|P26990 | 175 | ARF6 "ADP-ribosylation factor | 0.991 | 0.64 | 0.982 | 5.1e-58 | |
| ZFIN|ZDB-GENE-030131-9056 | 160 | arf6b "ADP-ribosylation factor | 0.991 | 0.7 | 0.982 | 5.1e-58 | |
| UNIPROTKB|G3N3N1 | 175 | ARF6 "Uncharacterized protein" | 0.991 | 0.64 | 0.973 | 1.4e-57 | |
| UNIPROTKB|E2RHL4 | 175 | ARF6 "Uncharacterized protein" | 0.991 | 0.64 | 0.973 | 1.4e-57 | |
| UNIPROTKB|P62330 | 175 | ARF6 "ADP-ribosylation factor | 0.991 | 0.64 | 0.973 | 1.4e-57 | |
| UNIPROTKB|Q007T5 | 175 | ARF6 "ADP-ribosylation factor | 0.991 | 0.64 | 0.973 | 1.4e-57 | |
| MGI|MGI:99435 | 175 | Arf6 "ADP-ribosylation factor | 0.991 | 0.64 | 0.973 | 1.4e-57 | |
| RGD|621279 | 175 | Arf6 "ADP-ribosylation factor | 0.991 | 0.64 | 0.973 | 1.4e-57 | |
| UNIPROTKB|P51645 | 175 | arf6 "ADP-ribosylation factor | 0.991 | 0.64 | 0.955 | 1.6e-56 | |
| FB|FBgn0013750 | 175 | Arf51F "ADP ribosylation facto | 1.0 | 0.645 | 0.955 | 2e-56 |
| UNIPROTKB|P26990 ARF6 "ADP-ribosylation factor 6" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 110/112 (98%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATT DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNYK 174
|
|
| ZFIN|ZDB-GENE-030131-9056 arf6b "ADP-ribosylation factor 6b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 110/112 (98%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 48 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 107
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATT DGLYEGLTWLTSN+K
Sbjct: 108 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNYK 159
|
|
| UNIPROTKB|G3N3N1 ARF6 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
|
|
| UNIPROTKB|E2RHL4 ARF6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
|
|
| UNIPROTKB|P62330 ARF6 "ADP-ribosylation factor 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
|
|
| UNIPROTKB|Q007T5 ARF6 "ADP-ribosylation factor 6" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
|
|
| MGI|MGI:99435 Arf6 "ADP-ribosylation factor 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
|
|
| RGD|621279 Arf6 "ADP-ribosylation factor 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
|
|
| UNIPROTKB|P51645 arf6 "ADP-ribosylation factor 6" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 107/112 (95%), Positives = 109/112 (97%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDC DRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA + DGLYEGLTWLTSN+K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLTSNYK 174
|
|
| FB|FBgn0013750 Arf51F "ADP ribosylation factor at 51F" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 108/113 (95%), Positives = 109/113 (96%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR ELHRIINDREMRDAIILIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGL EGL WLTSNHKL
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLTSNHKL 175
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9Y7Z2 | ARF6_SCHPO | No assigned EC number | 0.6902 | 1.0 | 0.6141 | yes | N/A |
| P51645 | ARF6_XENLA | No assigned EC number | 0.9553 | 0.9911 | 0.64 | N/A | N/A |
| P36397 | ARF1_ARATH | No assigned EC number | 0.6727 | 0.9734 | 0.6077 | yes | N/A |
| P0DH91 | ARF2B_ARATH | No assigned EC number | 0.6727 | 0.9734 | 0.6077 | yes | N/A |
| P51823 | ARF2_ORYSJ | No assigned EC number | 0.6636 | 0.9734 | 0.6077 | yes | N/A |
| Q94650 | ARF1_PLAFA | No assigned EC number | 0.6972 | 0.9646 | 0.6022 | yes | N/A |
| Q007T5 | ARF6_PIG | No assigned EC number | 0.9732 | 0.9911 | 0.64 | yes | N/A |
| Q7KQL3 | ARF1_PLAF7 | No assigned EC number | 0.6972 | 0.9646 | 0.6022 | yes | N/A |
| P40946 | ARF3_DROME | No assigned EC number | 0.9557 | 1.0 | 0.6457 | yes | N/A |
| Q06396 | ARF1_ORYSJ | No assigned EC number | 0.6636 | 0.9734 | 0.6077 | yes | N/A |
| Q9LQC8 | ARF2A_ARATH | No assigned EC number | 0.6727 | 0.9734 | 0.6077 | yes | N/A |
| P62330 | ARF6_HUMAN | No assigned EC number | 0.9732 | 0.9911 | 0.64 | yes | N/A |
| P62331 | ARF6_MOUSE | No assigned EC number | 0.9732 | 0.9911 | 0.64 | yes | N/A |
| P62332 | ARF6_RAT | No assigned EC number | 0.9732 | 0.9911 | 0.64 | yes | N/A |
| P26990 | ARF6_CHICK | No assigned EC number | 0.9821 | 0.9911 | 0.64 | yes | N/A |
| Q75A26 | ARF_ASHGO | No assigned EC number | 0.6428 | 0.9911 | 0.6187 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 113 | |||
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 1e-79 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 3e-78 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 3e-67 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 2e-65 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 7e-64 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 5e-63 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 2e-60 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 2e-50 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 9e-46 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 2e-44 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 1e-41 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 9e-39 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 1e-36 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 2e-34 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 3e-33 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 2e-27 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 7e-27 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 2e-25 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 1e-23 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 2e-21 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 6e-19 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 2e-17 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 1e-12 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 3e-10 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 5e-10 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 7e-10 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 6e-07 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 1e-06 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 2e-06 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 4e-06 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 7e-06 | |
| smart00275 | 342 | smart00275, G_alpha, G protein alpha subunit | 7e-05 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 1e-04 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 2e-04 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 4e-04 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 4e-04 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 7e-04 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 7e-04 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 0.001 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 0.001 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 0.001 | |
| cd00066 | 315 | cd00066, G-alpha, Alpha subunit of G proteins (gua | 0.001 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 0.001 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 0.001 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 0.002 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 230 bits (589), Expect = 1e-79
Identities = 103/110 (93%), Positives = 108/110 (98%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVD ADRDRIDEARQELHRIINDREMRDA++L+FAN
Sbjct: 59 DVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFAN 118
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWL+SN
Sbjct: 119 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSSN 168
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 227 bits (580), Expect = 3e-78
Identities = 89/112 (79%), Positives = 101/112 (90%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYT TQGLIFVVD DRDRIDEAR+ELHR++N+ E+RDA+IL+FAN
Sbjct: 63 DVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFAN 122
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMK EI EKLGL IRDRNWY+QP+CAT+ DGLYEGLTWL++N K
Sbjct: 123 KQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNLK 174
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 3e-67
Identities = 74/110 (67%), Positives = 94/110 (85%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+RI EAR+EL R++N+ E+RDA++L+FAN
Sbjct: 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFAN 109
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDLP+AM E+ +KLGL +R+RNWY+Q +CAT+ DGLYEGL WL++N
Sbjct: 110 KQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNN 159
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 2e-65
Identities = 62/111 (55%), Positives = 82/111 (73%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQ+ +RPLWR+Y+ T +IFVVD ADRDRI+EA++ELH ++N+ E+ DA +LI AN
Sbjct: 64 DVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILAN 123
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111
KQDLP AM EI+E LGL ++DR W +Q A T +GL EGL WL++
Sbjct: 124 KQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 7e-64
Identities = 73/110 (66%), Positives = 91/110 (82%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDK+RPLWRHYY T GLIFVVD DR+RI +AR+EL R++++ E+RDA++L+FAN
Sbjct: 67 DVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDLP+AM E+ EKLGL +R RNWY+Q CATTA GLYEGL WL++N
Sbjct: 127 KQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSAN 176
|
Length = 182 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 5e-63
Identities = 65/110 (59%), Positives = 82/110 (74%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLW+HYY T GLIFVVD +DR+RI+EA+ ELH+++N+ E++ A +LI AN
Sbjct: 49 DVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILAN 108
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDLP A+ E+ E LGL I+ R W++QP A T DGL EGL WL
Sbjct: 109 KQDLPGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 2e-60
Identities = 74/110 (67%), Positives = 93/110 (84%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDLP+AM EI +KLGL +R R+WY+Q +CAT+ +GLYEGL WL++N
Sbjct: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
|
Length = 181 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 2e-50
Identities = 52/110 (47%), Positives = 74/110 (67%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+ +R W YYT T +I V+D DR+R+ ++EL++++ ++R A++L+ AN
Sbjct: 65 DIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLAN 124
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDL AM P EI E LGLT IRD W++Q CA T +GL EGL W+ S
Sbjct: 125 KQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 9e-46
Identities = 52/107 (48%), Positives = 77/107 (71%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ IRP WR YY+ T +I+VVD DRDR+ ++ ELH ++ + E++DA++L+FAN
Sbjct: 49 DLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFAN 108
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
KQD+P A+ E+ EKLGL+ ++DR W + + AT +GL EG+ WL
Sbjct: 109 KQDMPGALSEAEVAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWL 155
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 2e-44
Identities = 52/110 (47%), Positives = 72/110 (65%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ KIRP WR+Y+ T LI+V+D ADR R +EA QEL ++ + ++ +L+FAN
Sbjct: 65 DIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFAN 124
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDL A E+ E L L IRDR+W++Q A T +GL EG+ W+ N
Sbjct: 125 KQDLLTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVCKN 174
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-41
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQ+K+R +W+ Y T GL++VVD +D R+DE+++EL I+ + ++ +++ AN
Sbjct: 50 DVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLAN 109
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRD-RNWYVQPSCATTADGLYEGLTWLTS 109
KQDLP A+ EI + L + R+WYVQP A T +GL E L S
Sbjct: 110 KQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 9e-39
Identities = 46/107 (42%), Positives = 70/107 (65%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQ +R WR+Y+ T LI+VVD +DR R+++ ++EL +++ + + A +LIFAN
Sbjct: 64 DVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFAN 123
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
KQDLP A+ P EI+E L L I+ +W + A T + L +G+ WL
Sbjct: 124 KQDLPGALSPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWL 170
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 122 bits (306), Expect = 1e-36
Identities = 54/109 (49%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGG+ K+RPLW+HYY TQ ++FV+D + RDR+ EA EL +++ ++E+RDA++LIFAN
Sbjct: 49 DVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFAN 108
Query: 61 KQDLPDAMKPHEIQEKLGLTRI-RDRNWYVQPSCATTADGLYEGLTWLT 108
KQD+ A+ E+ E L L ++ R+WY+Q A + GLYEGL WL+
Sbjct: 109 KQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLS 157
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-34
Identities = 49/105 (46%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQ+K+RPLW+ Y T G++FVVD D +R++EA+ ELH+I E + +L+ AN
Sbjct: 58 DVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLAN 117
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRD-RNWYVQPSCATTADGLYEGL 104
KQDLP+A+ E+++ L L + W+VQP+CA +GL EGL
Sbjct: 118 KQDLPNALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGL 162
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-33
Identities = 50/111 (45%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN--DREMRDAIILIF 58
D+ GQ K R LW HYY QG+IFV+D +DR R+ A+ EL ++N D + R IL +
Sbjct: 51 DMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFY 110
Query: 59 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
ANK DLPDA+ +I + L L I+D+ W++ S A T +GL EG+ WL +
Sbjct: 111 ANKMDLPDALTAVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQA 161
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-27
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+++R LW YY + G+I+V+D DR+R +E++ ++IN+ + +L+ AN
Sbjct: 57 DLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLAN 116
Query: 61 KQDLPDAMKPHEIQE--KLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
KQDLPDA+ EI+E + I R+ VQP A +G+ EG+ WL
Sbjct: 117 KQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWL 165
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 7e-27
Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
++GG +R W+ Y +G+QGLIFVVD AD +R+ ARQELH+++ D +++ AN
Sbjct: 50 EIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQ--HPPDLPLVVLAN 107
Query: 61 KQDLPDAMKPHEIQEKLGLTRI-RDRNWYVQPSCATTA 97
KQDLP A EI ++L L I R R W +Q +
Sbjct: 108 KQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDD 145
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-25
Identities = 35/110 (31%), Positives = 57/110 (51%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ + R +W Y G +++VVD ADR++++ A+ ELH ++ + +L+ N
Sbjct: 50 DLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGN 109
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
K DLP A+ E+ E++ L I DR A + L WL +
Sbjct: 110 KNDLPGALSVDELIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIKH 159
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 1e-23
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG R +W +YY GL+FVVD +D DR+ E ++ L ++ + IL+ AN
Sbjct: 49 DLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLAN 108
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRN---WYVQPSCATTADG------LYEGLTWLTSN 110
KQD +A+ ++ E L L ++ + N +++P A G + EGL WL +
Sbjct: 109 KQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLAA 167
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-21
Identities = 32/81 (39%), Positives = 52/81 (64%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG ++ R +W+ Y+ G++F+VD AD +R E+++EL ++ND E+ + ILI N
Sbjct: 69 DLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGN 128
Query: 61 KQDLPDAMKPHEIQEKLGLTR 81
K D P A+ E++E LGL
Sbjct: 129 KIDKPGAVSEEELREALGLYG 149
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 6e-19
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG + R LW+ Y+ G++++VD D++R E+++EL +++D E+ LI N
Sbjct: 67 DLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRI--RDRNWYVQP----SCATT-ADGLYEGLTWLT 108
K D P A E++ LGLT V+P C+ G EG WL+
Sbjct: 127 KIDAPYAASEDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYGEGFKWLS 181
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 2e-17
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R L YY G G++ V D R+ DE +E + + D IL+ N
Sbjct: 60 DTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGN 119
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDR 85
K DL D E++ R+
Sbjct: 120 KIDLFDE---QSSSEEILNQLNREV 141
|
Length = 219 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-12
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFA 59
GQ++ + +W G G I +VD + R A II+ R+ I +++
Sbjct: 74 GTPGQERFKFMWEILSRGAVGAIVLVDSS-RPITFHAE----EIIDFLTSRNPIPVVVAI 128
Query: 60 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGL 104
NKQDL DA+ P +I+E L L + + V AT +G + L
Sbjct: 129 NKQDLFDALPPEKIREALKLELL---SVPVIEIDATEGEGARDQL 170
|
Length = 187 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-10
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 1 DVGGQDKIRPLW-----RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 55
D G D+ L R G ++ VVD DR+ ++A+ + R + + I
Sbjct: 53 DTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP---I 109
Query: 56 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
++ NK DL + + + V A T +G+ E L
Sbjct: 110 ILVGNKIDLLEE--REVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-10
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFA 59
D GQ+ + R YY + + V D ++E ++ + I I++
Sbjct: 57 DTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVG 116
Query: 60 NKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCAT 95
NK DL DA +K H L + S T
Sbjct: 117 NKIDLRDAKLKTHVAFLFAKLNGEP----IIPLSAET 149
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-10
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 1 DVGGQDKIRP-LWRHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMR-DAI-IL 56
DV G +K+R L + + ++FVVD A + I + + L+ I+ D E + I IL
Sbjct: 53 DVPGHEKLRDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPIL 112
Query: 57 IFANKQDLPDAMKPHEIQEKL--GLTRIRDR 85
I NKQDL A +I+E L + +R+
Sbjct: 113 IACNKQDLFTAKPAKKIKELLEKEINTLRES 143
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-07
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R L YY G QG+I V D RD D L+ + DA+ ++ N
Sbjct: 55 DTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGN 114
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRN 86
K D E+ + G R N
Sbjct: 115 KIDKE----NREVTREEGQKFARKHN 136
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-06
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + +IFVV ++ D R++E+ I N
Sbjct: 174 DVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEESLNLFEEICNSPWF 233
Query: 51 RDA-IILIFANKQDL 64
++ IIL NK+DL
Sbjct: 234 KNTPIILFL-NKKDL 247
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-06
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFA 59
D GQ++ R + YY G G+I V D D++ + +Q L I DR + + L+
Sbjct: 57 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVG 114
Query: 60 NKQDLPD--AMKPHEIQEK 76
NK DL D + E +E
Sbjct: 115 NKCDLTDKKVVDYTEAKEF 133
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 4e-06
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD---RIDEARQELHRIINDREMRDAIILI 57
D GQ++ R + YY G G I V D +R+ +D+ EL + I++
Sbjct: 55 DTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPP----NIPIIL 110
Query: 58 FANKQDLPD 66
NK DL D
Sbjct: 111 VGNKSDLED 119
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-06
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 1 DVGGQDKIRP--LWRHYYT-GTQGLIFVVD-CADRDRIDEARQELHRIINDRE-MRDAI- 54
D G K+R L + +G++FVVD A + + + L+ I++ E +++ I
Sbjct: 55 DFPGHVKLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGID 114
Query: 55 ILIFANKQDLPDAMKPHEIQEKL--GLTRIRDR 85
ILI NKQ+ A P +I++ L + IR+R
Sbjct: 115 ILIACNKQESFTARPPKKIKQALEKEINTIRER 147
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 7e-05
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + +IF V ++ D R+ E+ I N R
Sbjct: 190 DVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249
Query: 51 RDAIILIFANKQDL 64
+ I++F NK DL
Sbjct: 250 ANTSIILFLNKIDL 263
|
Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 1e-04
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + + YY G Q +I V D D ++ RQ L + + + ++ +
Sbjct: 55 DTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGT 114
Query: 61 KQDL 64
K+DL
Sbjct: 115 KKDL 118
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (89), Expect = 2e-04
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R L Y + I V D +R + + + I+N+R +D II + N
Sbjct: 35 DTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIALVGN 93
Query: 61 KQDLPDAMK 69
K DL D K
Sbjct: 94 KTDLGDLRK 102
|
Length = 176 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ R L YY G QG + V D RD + + +E+ R ++ + I++
Sbjct: 54 DTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE----NVPIVL 109
Query: 58 FANKQDLPD 66
NK DL D
Sbjct: 110 VGNKCDLED 118
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 4e-04
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMR--DAIILIF 58
D GQ++ L YY G I V D D D + ++ + + ++MR + ++I
Sbjct: 55 DTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKEL---KQMRGNNISLVIV 111
Query: 59 ANKQDLPDAMK 69
NK DL
Sbjct: 112 GNKIDLERQRV 122
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 7e-04
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D + + + R I++ D ++ N
Sbjct: 58 DTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWM-RNIDEHASEDVERMLVGN 116
Query: 61 KQDLPD 66
K D+ +
Sbjct: 117 KCDMEE 122
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 7e-04
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM---RDAIILI 57
D GQ++ R + R YY G G + V D R+ + L + D D +I++
Sbjct: 55 DTAGQERFRSVTRSYYRGAAGALLVYDITSRESFN----ALTNWLTDARTLASPDIVIIL 110
Query: 58 FANKQDLPD 66
NK+DL D
Sbjct: 111 VGNKKDLED 119
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ R L YY G I V D + ++A+ +EL + +I +
Sbjct: 56 DTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPP----NIVIAL 111
Query: 58 FANKQDLPD 66
NK DL
Sbjct: 112 AGNKADLES 120
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D GQ++ R + YY G G + V D +R + ++ +EL + + +I++
Sbjct: 55 DTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASP----NVVIML 110
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 111 VGNKSDLEE 119
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.001
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID-------EARQELHRIINDREMRDA 53
D+ G + + +Y TQG++ V D DR + E +QE N M +
Sbjct: 55 DLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGN---MENI 111
Query: 54 IILIFANKQDLP 65
++++ ANK DL
Sbjct: 112 VVVVCANKIDLT 123
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding) | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + +IFVV ++ D R+ E+ + I N R
Sbjct: 167 DVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDESVNRMQESLKLFDSICNSRWF 226
Query: 51 RDAIILIFANKQDL 64
+ I++F NK+DL
Sbjct: 227 ANTSIILFLNKKDL 240
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 36.4 bits (84), Expect = 0.001
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD-----AII 55
D GQ++ R + YY G G + V D R D ++ L RE+RD +I
Sbjct: 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWL------RELRDHADSNIVI 120
Query: 56 LIFANKQDL 64
++ NK DL
Sbjct: 121 MMAGNKSDL 129
|
Length = 216 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 19 TQGLIFVVDCADRDRIDEA----RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 74
T+ L+ V+D + D E R EL + + + ++ NK DL DA + E
Sbjct: 79 TRVLLHVIDLSGEDDPVEDYETIRNELEAY--NPGLAEKPRIVVLNKIDLLDAEERFEKL 136
Query: 75 EKL 77
++L
Sbjct: 137 KEL 139
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 36.0 bits (83), Expect = 0.002
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY GT G+I V D + + ++ L I + + +++ N
Sbjct: 61 DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLV--GN 118
Query: 61 KQDLPD 66
K D P+
Sbjct: 119 KNDDPE 124
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 113 | |||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.94 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.93 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.93 | |
| KOG0084|consensus | 205 | 99.93 | ||
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.93 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.92 | |
| KOG0078|consensus | 207 | 99.92 | ||
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.92 | |
| KOG0092|consensus | 200 | 99.92 | ||
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.92 | |
| KOG0070|consensus | 181 | 99.91 | ||
| KOG0094|consensus | 221 | 99.91 | ||
| KOG0075|consensus | 186 | 99.91 | ||
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.91 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.91 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.91 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.91 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.91 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.91 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.91 | |
| KOG0071|consensus | 180 | 99.91 | ||
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.9 | |
| PTZ00099 | 176 | rab6; Provisional | 99.9 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.9 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.9 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.89 | |
| KOG0087|consensus | 222 | 99.89 | ||
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.89 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.89 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.89 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.89 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.89 | |
| KOG0073|consensus | 185 | 99.89 | ||
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.89 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.89 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.88 | |
| KOG0098|consensus | 216 | 99.88 | ||
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.88 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.88 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.88 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.88 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.88 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.88 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.88 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.88 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.87 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.87 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.87 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.87 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.87 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.87 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.87 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.87 | |
| KOG0080|consensus | 209 | 99.87 | ||
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.86 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.86 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.86 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.86 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.86 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.86 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.86 | |
| KOG0091|consensus | 213 | 99.86 | ||
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.86 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.86 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.86 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.86 | |
| KOG0088|consensus | 218 | 99.86 | ||
| KOG0093|consensus | 193 | 99.86 | ||
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.86 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.86 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.86 | |
| KOG0079|consensus | 198 | 99.85 | ||
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.85 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.85 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.85 | |
| KOG0081|consensus | 219 | 99.85 | ||
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.85 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.85 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.85 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.85 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.84 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.84 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.84 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.84 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.84 | |
| KOG0394|consensus | 210 | 99.84 | ||
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.84 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.84 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.84 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.84 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.84 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.84 | |
| KOG0095|consensus | 213 | 99.84 | ||
| KOG0395|consensus | 196 | 99.84 | ||
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.84 | |
| KOG0076|consensus | 197 | 99.83 | ||
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.83 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.83 | |
| KOG0086|consensus | 214 | 99.83 | ||
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.83 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.83 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.83 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.83 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.82 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.82 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.82 | |
| KOG0072|consensus | 182 | 99.81 | ||
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.81 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.81 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.81 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.81 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.81 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.81 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.81 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.81 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.8 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.8 | |
| KOG0083|consensus | 192 | 99.8 | ||
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.79 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.78 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.78 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.78 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.78 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.78 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.78 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.77 | |
| KOG0393|consensus | 198 | 99.75 | ||
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.75 | |
| KOG0074|consensus | 185 | 99.74 | ||
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.74 | |
| KOG0097|consensus | 215 | 99.74 | ||
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.71 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.7 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.69 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.69 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.69 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.68 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.65 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.65 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.64 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.64 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.61 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.61 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.61 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.61 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.6 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.6 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.6 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.6 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.6 | |
| KOG4252|consensus | 246 | 99.6 | ||
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.6 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.59 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.59 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.58 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.56 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.56 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.56 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.56 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.55 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.55 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.55 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.55 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.54 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.54 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.54 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.53 | |
| KOG1673|consensus | 205 | 99.53 | ||
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.52 | |
| KOG3883|consensus | 198 | 99.52 | ||
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.52 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.51 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.51 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.51 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.5 | |
| KOG0096|consensus | 216 | 99.49 | ||
| PRK15494 | 339 | era GTPase Era; Provisional | 99.49 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.49 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.48 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.48 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.48 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.48 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.47 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.47 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.46 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.45 | |
| KOG1145|consensus | 683 | 99.44 | ||
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.44 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.44 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.43 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.43 | |
| KOG0077|consensus | 193 | 99.42 | ||
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.42 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.41 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.41 | |
| KOG4423|consensus | 229 | 99.4 | ||
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.39 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.39 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.39 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.39 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.38 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.38 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.38 | |
| KOG0462|consensus | 650 | 99.38 | ||
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.38 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.38 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.38 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.37 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.36 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.35 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.35 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.34 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.34 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.33 | |
| KOG0090|consensus | 238 | 99.32 | ||
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.31 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.31 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.28 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.28 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.27 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.25 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.25 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.25 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.24 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.22 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.21 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.21 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.19 | |
| PRK13768 | 253 | GTPase; Provisional | 99.19 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.19 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.19 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.17 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.17 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.16 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.16 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 99.15 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.14 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.13 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.13 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.13 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 99.12 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.12 | |
| KOG1489|consensus | 366 | 99.12 | ||
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.12 | |
| KOG0082|consensus | 354 | 99.11 | ||
| CHL00071 | 409 | tufA elongation factor Tu | 99.1 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 99.09 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 99.08 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.08 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.07 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.07 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.07 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.06 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.06 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.05 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.04 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.03 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.02 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.01 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.0 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 98.99 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 98.98 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 98.95 | |
| KOG1144|consensus | 1064 | 98.93 | ||
| KOG1707|consensus | 625 | 98.93 | ||
| COG2262 | 411 | HflX GTPases [General function prediction only] | 98.9 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 98.9 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.9 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 98.89 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.89 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 98.87 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 98.85 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.83 | |
| KOG1423|consensus | 379 | 98.8 | ||
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.79 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 98.78 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 98.76 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 98.76 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 98.7 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 98.68 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 98.66 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.65 | |
| KOG1490|consensus | 620 | 98.65 | ||
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.64 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.64 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 98.63 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 98.61 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 98.6 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 98.59 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 98.51 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 98.5 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 98.46 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.45 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 98.44 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 98.43 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.41 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.37 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 98.35 | |
| KOG0085|consensus | 359 | 98.3 | ||
| KOG0099|consensus | 379 | 98.29 | ||
| KOG0458|consensus | 603 | 98.26 | ||
| PTZ00416 | 836 | elongation factor 2; Provisional | 98.24 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 98.24 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 98.22 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.21 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.17 | |
| KOG1191|consensus | 531 | 98.15 | ||
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.15 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 98.06 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 98.03 | |
| KOG0461|consensus | 522 | 97.98 | ||
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 97.87 | |
| KOG0466|consensus | 466 | 97.84 | ||
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 97.84 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 97.82 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 97.82 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 97.8 | |
| KOG0460|consensus | 449 | 97.8 | ||
| KOG0468|consensus | 971 | 97.79 | ||
| KOG1707|consensus | 625 | 97.78 | ||
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 97.77 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 97.77 | |
| KOG1424|consensus | 562 | 97.76 | ||
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 97.68 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 97.68 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 97.64 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 97.64 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.57 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 97.5 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 97.43 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.38 | |
| KOG1532|consensus | 366 | 97.35 | ||
| KOG0465|consensus | 721 | 97.3 | ||
| KOG1143|consensus | 591 | 97.1 | ||
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 97.05 | |
| KOG2484|consensus | 435 | 96.95 | ||
| KOG0463|consensus | 641 | 96.95 | ||
| KOG3886|consensus | 295 | 96.76 | ||
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 96.57 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 96.53 | |
| KOG1954|consensus | 532 | 96.34 | ||
| KOG0448|consensus | 749 | 96.19 | ||
| KOG0705|consensus | 749 | 96.19 | ||
| KOG0467|consensus | 887 | 96.1 | ||
| KOG3905|consensus | 473 | 95.88 | ||
| KOG0464|consensus | 753 | 95.77 | ||
| KOG0459|consensus | 501 | 95.63 | ||
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 95.6 | |
| KOG2485|consensus | 335 | 95.41 | ||
| KOG2423|consensus | 572 | 95.16 | ||
| COG1149 | 284 | MinD superfamily P-loop ATPase containing an inser | 95.13 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 94.89 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 94.74 | |
| COG4963 | 366 | CpaE Flp pilus assembly protein, ATPase CpaE [Intr | 94.62 | |
| KOG0447|consensus | 980 | 94.56 | ||
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 94.46 | |
| KOG2486|consensus | 320 | 94.36 | ||
| cd03112 | 158 | CobW_like The function of this protein family is u | 94.29 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 93.74 | |
| KOG0410|consensus | 410 | 93.62 | ||
| PF14331 | 266 | ImcF-related_N: ImcF-related N-terminal domain | 93.6 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 93.29 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 93.09 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 92.94 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 92.65 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 92.44 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 92.25 | |
| KOG3887|consensus | 347 | 91.47 | ||
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 91.42 | |
| KOG0469|consensus | 842 | 90.74 | ||
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 89.15 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 88.44 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 88.21 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 87.84 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 87.74 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 87.52 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 86.56 | |
| CHL00175 | 281 | minD septum-site determining protein; Validated | 85.76 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 85.16 | |
| TIGR01968 | 261 | minD_bact septum site-determining protein MinD. Th | 84.4 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 84.0 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 83.94 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 83.87 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 82.93 | |
| PF02662 | 124 | FlpD: Methyl-viologen-reducing hydrogenase, delta | 82.59 | |
| KOG1486|consensus | 364 | 81.92 | ||
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 81.86 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 81.62 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 81.12 | |
| PRK13505 | 557 | formate--tetrahydrofolate ligase; Provisional | 80.94 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 80.68 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 80.51 |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=136.55 Aligned_cols=111 Identities=67% Similarity=1.236 Sum_probs=96.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..|++++|++|+|+|.+++.++.....++..+.......++|+++++||+|+++....+++.+.++..
T Consensus 67 D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~ 146 (181)
T PLN00223 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (181)
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999998999888888887655444679999999999998877778888888766
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+.+.++++||++|+|+.++|+||...+
T Consensus 147 ~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 5555677788999999999999999998765
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=133.66 Aligned_cols=111 Identities=79% Similarity=1.359 Sum_probs=96.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..|+++++++|+|+|.+++.+++....|+..+.+.....++|+++++||+|+.+..+..++.+.++..
T Consensus 63 D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 142 (175)
T smart00177 63 DVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLH 142 (175)
T ss_pred ECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999999999999998888665434578999999999998766777788877766
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
......+.++++||++|.|++++|+||...+
T Consensus 143 ~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 143 SIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 5556677888999999999999999998765
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=133.13 Aligned_cols=109 Identities=94% Similarity=1.520 Sum_probs=93.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+.++.......++|+++++||+|+.+..+.+++.+..+..
T Consensus 59 Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 138 (168)
T cd04149 59 DVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLT 138 (168)
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCC
Confidence 89999999999999999999999999999988999888888888765434678999999999997666667777766655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
......++++++||++|.|++++|+||.+
T Consensus 139 ~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 139 RIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred ccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 55556678999999999999999999975
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-26 Score=138.14 Aligned_cols=106 Identities=20% Similarity=0.342 Sum_probs=88.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
||+||+||+++..+||++||+||+|||+++.+||+....|+.++.+.. ..++|.++||||+|+.+.... .+.++.+.
T Consensus 64 DTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa- 141 (205)
T KOG0084|consen 64 DTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFA- 141 (205)
T ss_pred eccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHH-
Confidence 899999999999999999999999999999999999999999997764 366899999999999775321 22233333
Q ss_pred CccCCCCeE-EEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWY-VQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++ ++++||+++.+++++|..+...+
T Consensus 142 ---~~~~~~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 142 ---DELGIPIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred ---HhcCCcceeecccCCccCHHHHHHHHHHHH
Confidence 223445 88999999999999999988765
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=130.52 Aligned_cols=109 Identities=67% Similarity=1.260 Sum_probs=92.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..+|..|++++|++++|+|.+++.+++....|+..+.......+.|+++++||+|+.+.....++.+.++..
T Consensus 50 D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 129 (159)
T cd04150 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLH 129 (159)
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999988999988888887654334568999999999997655566776766655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
....+.+.++++||++|.|++++|+||.+
T Consensus 130 ~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 130 SLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred ccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 55556778899999999999999999975
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=130.68 Aligned_cols=111 Identities=66% Similarity=1.216 Sum_probs=95.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..|+.++|++|+|+|.+++.+++....++..+.......+.|+++++||.|+++.....++...++..
T Consensus 67 D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~ 146 (182)
T PTZ00133 67 DVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLH 146 (182)
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCC
Confidence 89999999999999999999999999999988999888888877654334578999999999997766667777777766
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
......++++++||++|.|++++|+||.+.+
T Consensus 147 ~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 147 SVRQRNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred cccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 5656678889999999999999999998754
|
|
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-25 Score=135.33 Aligned_cols=108 Identities=21% Similarity=0.353 Sum_probs=89.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+||++|+.+...|+.+|+++++|||+++..+++....|++.+.++. ..++|.++||||+|+..... +....+..
T Consensus 67 DtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~---V~~e~ge~ 142 (207)
T KOG0078|consen 67 DTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEKRQ---VSKERGEA 142 (207)
T ss_pred EcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeecccccccccc---ccHHHHHH
Confidence 899999999999999999999999999999999999999999997764 35899999999999976322 22222222
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.....+++++|+||++|.||.+.|-.|++.+.
T Consensus 143 lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 143 LAREYGIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HHHHhCCeEEEccccCCCCHHHHHHHHHHHHH
Confidence 22234567889999999999999999987653
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-24 Score=128.12 Aligned_cols=111 Identities=50% Similarity=0.942 Sum_probs=101.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|+..++.+|+.|+++++++|||+|.+++..+......+..+...+...++|+++++||+|+++..+..++.+.+...
T Consensus 64 d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~ 143 (175)
T PF00025_consen 64 DLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLE 143 (175)
T ss_dssp EESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGG
T ss_pred eccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhh
Confidence 67999999999999999999999999999999999999999999887767889999999999999888899998888877
Q ss_pred ccC-CCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIR-DRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~-~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+. ...+.++.|||.+|+|+.+.++||.+++
T Consensus 144 ~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 144 KLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp GTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred hcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 665 6889999999999999999999998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-25 Score=131.45 Aligned_cols=106 Identities=21% Similarity=0.337 Sum_probs=88.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||+|||||.++-+-||.+|+++|+|||+++.+||.....|++++.+... +++-+.++|||+|+.+. ...++...
T Consensus 60 DTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~--- 135 (200)
T KOG0092|consen 60 DTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQA--- 135 (200)
T ss_pred EcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHH---
Confidence 8999999999999999999999999999999999999999999976543 77888999999999762 23322221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+....+..++++||+++.|++++|..+.+.+.
T Consensus 136 --yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 136 --YAESQGLLFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred --HHHhcCCEEEEEecccccCHHHHHHHHHHhcc
Confidence 22235567999999999999999999988764
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=134.00 Aligned_cols=106 Identities=21% Similarity=0.265 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|+++|+.++..|+++||++|+|||++++.+++....|+..+.+. ...+.|+++|+||+|+.+.. ...+. +.+.
T Consensus 55 DtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~-~~~a 132 (202)
T cd04120 55 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQG-EKFA 132 (202)
T ss_pred eCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHH-HHHH
Confidence 89999999999999999999999999999999999999999877543 23578999999999986432 22221 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ..++.+++|||++|.|++++|+++++.+
T Consensus 133 ~~---~~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 133 QQ---ITGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred Hh---cCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 11 1246799999999999999999998754
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=125.05 Aligned_cols=112 Identities=60% Similarity=1.145 Sum_probs=105.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++||++++++|++|+++++++|||+|.+++.++.+....+..+..++...+.|+++.+||.|++++.+..++.+.+++.
T Consensus 67 DvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~ 146 (181)
T KOG0070|consen 67 DVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLH 146 (181)
T ss_pred ecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhh
Confidence 89999999999999999999999999999999999999999999888777899999999999999999999999999998
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+....|.+..|||.+|+|+.+.++|+...+.
T Consensus 147 ~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 147 SLRSRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred ccCCCCcEEeeccccccccHHHHHHHHHHHHh
Confidence 88889999999999999999999999987764
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=128.77 Aligned_cols=108 Identities=20% Similarity=0.359 Sum_probs=91.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|||||+.+...|+.++.++|+|||.++..+|+.+.+|++.+...+...+.-+++||||.||.++ .++....+..
T Consensus 77 DTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~ 153 (221)
T KOG0094|consen 77 DTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGER 153 (221)
T ss_pred ecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHH
Confidence 8999999999999999999999999999999999999999999998877667889999999999774 3443333333
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..+..++++||+.|.|+..+|..+...+
T Consensus 154 kAkel~a~f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 154 KAKELNAEFIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred HHHHhCcEEEEecccCCCCHHHHHHHHHHhc
Confidence 3333455789999999999999999987654
|
|
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=121.04 Aligned_cols=112 Identities=31% Similarity=0.644 Sum_probs=105.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|.|||.+|+++|+.|+.++++++||+|+++++.++.....+..++..+...++|+++.+||.|++++.+..++.+..++.
T Consensus 71 D~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~ 150 (186)
T KOG0075|consen 71 DLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLS 150 (186)
T ss_pred ecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcc
Confidence 78999999999999999999999999999999999999999999888888999999999999999999999999999988
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+..+.+-+|.+|++...+++-+.+||+++.+
T Consensus 151 sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 151 SITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred ccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 88888999999999999999999999998754
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=132.55 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=86.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||+|+++|+.+++.|++++|++++|||++++.+++.+..|+.++.+.. ++.|+++++||.|+... .+..+... +.
T Consensus 61 Dt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~-~a 137 (189)
T cd04121 61 DTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQA-YA 137 (189)
T ss_pred eCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHH-HH
Confidence 899999999999999999999999999999999999999999996642 57999999999999653 23322222 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+..++++++|||++|.|++++|+++++.+
T Consensus 138 ----~~~~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 138 ----ERNGMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred ----HHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 23456799999999999999999998754
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=125.37 Aligned_cols=109 Identities=33% Similarity=0.650 Sum_probs=93.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..|+.++|++++|+|.+++.+++....|+..+.+.....++|+++++||+|+++..+..++.+.+...
T Consensus 49 D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~ 128 (167)
T cd04161 49 DLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLE 128 (167)
T ss_pred ECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcc
Confidence 89999999999999999999999999999988999999999988766444689999999999998877777777776654
Q ss_pred ccC---CCCeEEEeccccCC------CCHHHHHHHHHh
Q psy17510 81 RIR---DRNWYVQPSCATTA------DGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~---~~~~~~~~~sa~~~------~~i~~~~~~l~~ 109 (113)
.+. ...+++++|||++| +|+.+.|+||..
T Consensus 129 ~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 129 KLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred cccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 432 24578999999998 899999999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=124.88 Aligned_cols=111 Identities=50% Similarity=0.963 Sum_probs=91.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..++.++|++++|+|.+++.+++....|+..+.......+.|+++++||+|+.+..+..++.+.....
T Consensus 49 Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 128 (169)
T cd04158 49 DVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLH 128 (169)
T ss_pred ECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCc
Confidence 89999999999999999999999999999999999999999998765444568999999999997666666665544322
Q ss_pred cc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ....+.+++|||++|.|++++|+||.+.+
T Consensus 129 ~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 129 KLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred cccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 22 23356788999999999999999998764
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=125.15 Aligned_cols=109 Identities=48% Similarity=0.931 Sum_probs=92.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..+|..+++++|++++|+|.+++.++.....++..+.+.....++|+++++||+|+.+..+.+++.+.++..
T Consensus 65 D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~ 144 (174)
T cd04153 65 DIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLT 144 (174)
T ss_pred ECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999988888888888877665444679999999999997766667777777655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
......++++++||+++.|++++|++|.+
T Consensus 145 ~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 145 SIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 44456788999999999999999999975
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=124.77 Aligned_cols=109 Identities=45% Similarity=0.911 Sum_probs=91.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|.+++.++.....|+..+.......++|+++++||+|+.+.....++.+.+...
T Consensus 64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 143 (173)
T cd04154 64 DVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELD 143 (173)
T ss_pred ECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999988898888888887654444679999999999997765666666655543
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
......++++++||++|.|++++|++++.
T Consensus 144 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 144 KISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 33456789999999999999999999875
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=122.49 Aligned_cols=109 Identities=48% Similarity=0.980 Sum_probs=88.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|+.+++.++++++|+|.+++.++.....++..+.+.....++|+++++||+|+.+.....++.+.++..
T Consensus 49 Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~ 128 (158)
T cd04151 49 DLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLS 128 (158)
T ss_pred ECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999887777766666665544334579999999999997655556666666544
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
......++++++||+++.|+++++++|++
T Consensus 129 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 129 ELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred ccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 44445678999999999999999999975
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=122.34 Aligned_cols=110 Identities=45% Similarity=0.814 Sum_probs=89.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAMKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 78 (113)
||||+++++.+|..+++++|++++|+|.+++.++.....|+..+.+... ..++|+++++||+|+.+.....++...+.
T Consensus 51 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~ 130 (162)
T cd04157 51 DMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLG 130 (162)
T ss_pred ECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhC
Confidence 8999999999999999999999999999998888888888887765432 24799999999999976555555665555
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
........++++++||+++.|++++|++|.++
T Consensus 131 ~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~~ 162 (162)
T cd04157 131 LENIKDKPWHIFASNALTGEGLDEGVQWLQAQ 162 (162)
T ss_pred CccccCceEEEEEeeCCCCCchHHHHHHHhcC
Confidence 44333445779999999999999999999753
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=118.06 Aligned_cols=112 Identities=86% Similarity=1.383 Sum_probs=106.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|+++.+.+|++||.++.++|||+|..+++..++..+.+..+.+++++...|+++.+||.|++++.+++++...+.+.
T Consensus 67 dvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe 146 (180)
T KOG0071|consen 67 DVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELE 146 (180)
T ss_pred eccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999888999999999999999999999999999988
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.++...|-+..+||.+++|+.+.+.||...++
T Consensus 147 ~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 147 RIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence 88899999999999999999999999988764
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-24 Score=127.60 Aligned_cols=106 Identities=22% Similarity=0.257 Sum_probs=85.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||+++++.++..++..+|++++|||++++.+++....|+..+.+.....++|+++++||+|+.+.. +..+. ..+
T Consensus 56 Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~~- 133 (172)
T cd04141 56 DTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEG-RNL- 133 (172)
T ss_pred eCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHH-HHH-
Confidence 89999999999999999999999999999999999998887777554334679999999999986532 22221 111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+..++++++|||+++.|++++|+++++.+
T Consensus 134 ---a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 134 ---AREFNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ---HHHhCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 123457899999999999999999998754
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-24 Score=127.89 Aligned_cols=105 Identities=24% Similarity=0.368 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||+++++.++..|+.+||++|+|||++++.+++....|+..+.+.. ..+.|+++|+||+|+.+. .+..+....
T Consensus 35 Dt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~e~~~~-- 111 (176)
T PTZ00099 35 DTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRKVTYEEGMQK-- 111 (176)
T ss_pred ECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCCCHHHHHHH--
Confidence 899999999999999999999999999999999999999999886543 256899999999998642 233222221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....++.+++|||+++.|++++|+++++.+
T Consensus 112 ---~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 112 ---AQEYNTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred ---HHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 112345689999999999999999999765
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=123.40 Aligned_cols=110 Identities=33% Similarity=0.627 Sum_probs=94.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..|+.++|++++|+|.+++.++.....++..+.+.....++|+++++||+|++...+.+++.+.++..
T Consensus 67 D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~ 146 (184)
T smart00178 67 DLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLT 146 (184)
T ss_pred ECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCC
Confidence 89999999999999999999999999999988888888888887654444678999999999998777888888887754
Q ss_pred ccC-------CCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIR-------DRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~-------~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
... .+.+.+++|||++++|++++++||..+
T Consensus 147 ~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 147 NTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 321 256789999999999999999999865
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=119.57 Aligned_cols=109 Identities=43% Similarity=0.854 Sum_probs=90.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..+|..++.++|++++|+|.+++.++.....|+..+.+.....+.|+++++||+|+.......++...+...
T Consensus 50 D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~ 129 (160)
T cd04156 50 DVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLK 129 (160)
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCc
Confidence 89999999999999999999999999999988888888888888765444679999999999997655666666655433
Q ss_pred cc-CCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RI-RDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
.. ...++++++|||+++.|++++|++|.+
T Consensus 130 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 130 KYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 22 335678999999999999999999865
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=120.59 Aligned_cols=107 Identities=40% Similarity=0.737 Sum_probs=90.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..+++++|++++|+|.+++.++.....|+..+.... .++|+++++||+|+.+.....++.+.....
T Consensus 50 Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 127 (164)
T cd04162 50 EIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELE 127 (164)
T ss_pred ECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCCh
Confidence 899999999999999999999999999999888888888888886542 679999999999998776666666665544
Q ss_pred cc-CCCCeEEEeccccC------CCCHHHHHHHHHh
Q psy17510 81 RI-RDRNWYVQPSCATT------ADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~-~~~~~~~~~~sa~~------~~~i~~~~~~l~~ 109 (113)
.+ ...++++++|||++ ++|++++|+.++.
T Consensus 128 ~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 128 PIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 33 45678899999988 9999999998864
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=126.85 Aligned_cols=107 Identities=19% Similarity=0.366 Sum_probs=87.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+||+||++....||++|.+.++|||+++..+|+...+|+++++.+.. +++++++|+||+||..... +...-+..
T Consensus 69 DTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lra---V~te~~k~ 144 (222)
T KOG0087|consen 69 DTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRA---VPTEDGKA 144 (222)
T ss_pred cccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccc---cchhhhHh
Confidence 8999999999999999999999999999999999999999999988754 6899999999999865221 11111212
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....+++++++||+++.++++.|..+...+
T Consensus 145 ~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 145 FAEKEGLFFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred HHHhcCceEEEecccccccHHHHHHHHHHHH
Confidence 2223455688999999999999998877654
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=124.77 Aligned_cols=103 Identities=22% Similarity=0.290 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||+|+++|+.++..|+.+++++|+|||++++.+++....|+.++.+. ..++|+++|+||+|+.... ..+.. +
T Consensus 50 Dt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~---- 122 (200)
T smart00176 50 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKDRKVKAKSI-T---- 122 (200)
T ss_pred ECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccCCHHHH-H----
Confidence 89999999999999999999999999999999999999999999764 2579999999999985422 22211 1
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....++++++|||+++.|+.++|+++++.+
T Consensus 123 -~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 123 -FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred -HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1123467899999999999999999998754
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=123.80 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=83.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG- 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~- 78 (113)
||+|+++|+.++..|+.++|++|+|||++++.+++... .|...+... ..+.|+++|+||.|+.+.....+......
T Consensus 57 Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~ 134 (191)
T cd01875 57 DTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQ 134 (191)
T ss_pred ECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccC
Confidence 89999999999999999999999999999999999986 587777543 25799999999999965322111111111
Q ss_pred --------CCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 --------LTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 --------~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.......+ +++++|||++|.|++++|+++++.+
T Consensus 135 ~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 135 APITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 01111223 5899999999999999999998754
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-23 Score=125.92 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=84.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-------HH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKP-------HE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-------~~ 72 (113)
||+|+++|+.++..|+.+++++|+|||.+++.+++.. ..|+..+.+.. .+.|+++|+||+|+.+.... ..
T Consensus 55 Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~ 132 (176)
T cd04133 55 DTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASP 132 (176)
T ss_pred ECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCC
Confidence 8999999999999999999999999999999999998 68999886543 57999999999999653110 00
Q ss_pred HHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....+.......++ ++++|||+++.|++++|+.+++.+
T Consensus 133 v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 133 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 111111111122344 589999999999999999998754
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-23 Score=122.00 Aligned_cols=107 Identities=16% Similarity=0.236 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
||||+++|..++..|+++++++++|||.+++.+++....|+..+.+.....++|+++++||+|+.+.... .+....+..
T Consensus 55 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 134 (163)
T cd04136 55 DTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR 134 (163)
T ss_pred ECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH
Confidence 8999999999999999999999999999999999999999888876544467899999999998653221 111111111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|+.++|+++++.+
T Consensus 135 ----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 135 ----QWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ----HcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 1236799999999999999999998765
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-23 Score=122.95 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=86.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||++++..++..+++++|++++|||.+++.+++....|+..+.......+.|+++++||+|+.+... ..+. +.+.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~ 133 (164)
T cd04175 55 DTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLA 133 (164)
T ss_pred ECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHH
Confidence 899999999999999999999999999999999999999988887654446799999999999865322 2211 1111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...+++++++||+++.|++++|+++++.+.
T Consensus 134 ----~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 134 ----RQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred ----HHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 122357999999999999999999987653
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=116.45 Aligned_cols=111 Identities=40% Similarity=0.791 Sum_probs=100.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++||..++..|++||..+|++|+|+|.+++.++++....+..+.......+.|+++++||+|++++.+.+++...+.+.
T Consensus 66 DvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~ 145 (185)
T KOG0073|consen 66 DVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLE 145 (185)
T ss_pred EcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHH
Confidence 78999999999999999999999999999999999999888888776666789999999999999999999998888866
Q ss_pred cc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+ +...|+++.|||.+|+++.+.++||+..+
T Consensus 146 ~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 146 ELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred HhccccCceEEEEeccccccHHHHHHHHHHHH
Confidence 55 67889999999999999999999998653
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-22 Score=119.70 Aligned_cols=111 Identities=45% Similarity=0.804 Sum_probs=89.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.+|..++.++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.....++.......
T Consensus 58 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~ 137 (183)
T cd04152 58 DVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALH 137 (183)
T ss_pred ECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCcc
Confidence 89999999999999999999999999999988888888888877654334579999999999987655555555444432
Q ss_pred cc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ....++++++||+++.|+++++++|.+.+
T Consensus 138 ~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 138 ELSASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred ccCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 22 22346789999999999999999998754
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-23 Score=121.91 Aligned_cols=107 Identities=15% Similarity=0.229 Sum_probs=85.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH-HHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH-EIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~ 79 (113)
||+|+++|..++..|+.++|++++|+|.+++.+++....|+..+.+.....++|+++++||+|+.+..... .....+.
T Consensus 55 Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~- 133 (163)
T cd04176 55 DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA- 133 (163)
T ss_pred ECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH-
Confidence 89999999999999999999999999999999999999998888765434679999999999985432211 1112221
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|+.++|.++++.+
T Consensus 134 ---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 134 ---EEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred ---HHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 11235789999999999999999998765
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=117.41 Aligned_cols=109 Identities=38% Similarity=0.766 Sum_probs=90.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++.+..++..++++++++++|+|.+++.++.....|+..+.+.....++|+++++||+|+.+.....++.+.+...
T Consensus 56 Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~ 135 (167)
T cd04160 56 DLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDK 135 (167)
T ss_pred ECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccc
Confidence 89999999999999999999999999999888888888888888765445689999999999997766555555544322
Q ss_pred c--cCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 R--IRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~--~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
. .....++++++||++|.|++++++||+.
T Consensus 136 ~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 136 AEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred cccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 1 2234678999999999999999999975
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-23 Score=123.13 Aligned_cols=107 Identities=23% Similarity=0.383 Sum_probs=87.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+||++|++..+.||++|-++|+|||+++.++|.....|+..+.+.. ..++.+++++||+|+.... ++.++.+..
T Consensus 61 DtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR---~Vs~EEGea 136 (216)
T KOG0098|consen 61 DTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARR---EVSKEEGEA 136 (216)
T ss_pred ecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccc---cccHHHHHH
Confidence 899999999999999999999999999999999999999999998874 3789999999999996532 222222222
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.+..++.+.++||+++.|++++|.....++
T Consensus 137 FA~ehgLifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 137 FAREHGLIFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred HHHHcCceeehhhhhhhhhHHHHHHHHHHHH
Confidence 2233444577999999999999998776554
|
|
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=115.56 Aligned_cols=110 Identities=59% Similarity=1.081 Sum_probs=93.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..++..++.++|++++|+|+++++++.....|+..+.......+.|+++++||+|+.......++.+.....
T Consensus 49 D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~ 128 (158)
T cd00878 49 DVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLE 128 (158)
T ss_pred ECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChh
Confidence 89999999999999999999999999999998999988888888665445689999999999997766666777766654
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
......++++++||++|.|++++|++|..+
T Consensus 129 ~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~ 158 (158)
T cd00878 129 KILGRRWHIQPCSAVTGDGLDEGLDWLLQQ 158 (158)
T ss_pred hccCCcEEEEEeeCCCCCCHHHHHHHHhhC
Confidence 334467899999999999999999998753
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-23 Score=124.32 Aligned_cols=108 Identities=12% Similarity=0.139 Sum_probs=83.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKP--------- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------- 70 (113)
||+|+++|+.++..|+.++|++++|||++++.+++.. ..|+..+.+.. ++.|+++|+||+|+.+....
T Consensus 59 DtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~ 136 (182)
T cd04172 59 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQ 136 (182)
T ss_pred ECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCC
Confidence 8999999999999999999999999999999999997 78998886642 57899999999998642100
Q ss_pred HHHHHHhCCCccCCCC-eEEEeccccCCCC-HHHHHHHHHhh
Q psy17510 71 HEIQEKLGLTRIRDRN-WYVQPSCATTADG-LYEGLTWLTSN 110 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~-i~~~~~~l~~~ 110 (113)
..+....+..+.+..+ +++++|||+++.| ++++|+.+++.
T Consensus 137 ~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 137 TPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 0011111111222344 3799999999998 99999998874
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=119.22 Aligned_cols=111 Identities=33% Similarity=0.655 Sum_probs=92.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|+||+++++.+|..++.+++++++|+|.++..++.....|+..+.+.....+.|+++++||+|+.......++.+..+..
T Consensus 69 D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~ 148 (190)
T cd00879 69 DLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLY 148 (190)
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcc
Confidence 79999999999999999999999999999988888888888888765444679999999999997766777777766542
Q ss_pred cc-----------CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RI-----------RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~-----------~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ....+++++|||++++|++++|+||.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 149 GTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 21 12346799999999999999999998753
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=121.21 Aligned_cols=105 Identities=21% Similarity=0.321 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++++++++++|||++++.+++....|+..+.... ..+.|+++++||+|+.+.. +.++..+. .
T Consensus 57 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-~ 134 (166)
T cd04122 57 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQF-A 134 (166)
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHH-H
Confidence 899999999999999999999999999999999999999998875532 2568999999999986543 22332222 1
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|+.++|.++++.+
T Consensus 135 ----~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 135 ----DENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred ----HHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 12356899999999999999999998754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=123.06 Aligned_cols=106 Identities=17% Similarity=0.288 Sum_probs=85.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|||++++.++.....|+..+.......+.|+++|+||+|+.+. .+.++. ..+.
T Consensus 69 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~~ 147 (180)
T cd04127 69 DTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KALA 147 (180)
T ss_pred eCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHHH
Confidence 8999999999999999999999999999999999999999998866544457899999999998653 222222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 148 ----~~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 148 ----DKYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred ----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11245789999999999999999998653
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-22 Score=122.85 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=85.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||+++|..++..|+++++++++|||.+++.+++....|+..+.+.....+.|+++++||+|+.+.. ...+. ..+.
T Consensus 59 Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~-~~~~ 137 (189)
T PTZ00369 59 DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEG-QELA 137 (189)
T ss_pred eCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHH-HHHH
Confidence 89999999999999999999999999999999999999999888664334578999999999986432 22111 1111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|+.++|+++++.+
T Consensus 138 ----~~~~~~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 138 ----KSFGIPFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred ----HHhCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 11245799999999999999999998764
|
|
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-22 Score=119.34 Aligned_cols=106 Identities=19% Similarity=0.282 Sum_probs=85.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||++++..+++.+++++|++++|+|++++.+++....|+..+.+.....+.|+++++||+|+.+... ..+. ..+.
T Consensus 56 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~-~~~~ 134 (164)
T cd04145 56 DTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEG-QELA 134 (164)
T ss_pred ECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHH-HHHH
Confidence 899999999999999999999999999999999999999988886643345789999999999865322 2222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 135 ----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 135 ----RKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ----HHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 12345789999999999999999998765
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-22 Score=125.63 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=81.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---------H
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMK---------P 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---------~ 70 (113)
||+|+++|..++..|+.+|+++++|||++++.+++.. ..|+..+.+. .++.|+++|+||+|+.+... .
T Consensus 67 DTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~~~~ 144 (232)
T cd04174 67 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQ 144 (232)
T ss_pred eCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhccccC
Confidence 8999999999999999999999999999999999985 7899888654 25789999999999864210 0
Q ss_pred HHHHHHhCCCccCCCCe-EEEeccccCCC-CHHHHHHHHHhh
Q psy17510 71 HEIQEKLGLTRIRDRNW-YVQPSCATTAD-GLYEGLTWLTSN 110 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~sa~~~~-~i~~~~~~l~~~ 110 (113)
..+....+..+....++ ++++|||++|. |++++|..++..
T Consensus 145 ~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 145 APISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred CcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHH
Confidence 00111111112223344 58999999997 899999998764
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-22 Score=124.30 Aligned_cols=110 Identities=15% Similarity=0.250 Sum_probs=83.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA------------- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------- 67 (113)
||+|+++|..++..|+.++|++|+|||++++.+++....|+..+.+.. ..+.|+++|+||+|+.+.
T Consensus 50 Dt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~ 128 (220)
T cd04126 50 DTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDR 128 (220)
T ss_pred eCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccccccccccccccccc
Confidence 899999999999999999999999999999999999988888776532 356899999999998651
Q ss_pred --------CCHH---HHHHHhCC------CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 --------MKPH---EIQEKLGL------TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 --------~~~~---~~~~~~~~------~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+.+ .+++..+. +......+++++|||++|.|++++|..+++.+
T Consensus 129 ~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 129 VSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred ccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1111 12222110 00011236799999999999999999998654
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=119.55 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=84.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC---cCCCCCeEEEEEeCCCCCC--CCCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND---REMRDAIILIFANKQDLPD--AMKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D~~~--~~~~~~~~~ 75 (113)
||||+++++.+++.++++++++|+|||.+++.+++....|+..+... +...++|+++++||+|+.+ .....++.+
T Consensus 56 Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 135 (201)
T cd04107 56 DIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQ 135 (201)
T ss_pred ECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHH
Confidence 89999999999999999999999999999999999999898877532 1125789999999999963 333333332
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..... ..++++++||+++.|++++|+++++.+
T Consensus 136 ~~~~~----~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 136 FCKEN----GFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred HHHHc----CCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22211 124689999999999999999998754
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=115.32 Aligned_cols=106 Identities=18% Similarity=0.261 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||+|+++++.++..|+++++++++|+|.++..+++....|+..+.+.....+.|+++++||+|+.+.. ...+..+..
T Consensus 55 Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-- 132 (162)
T cd04138 55 DTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-- 132 (162)
T ss_pred ECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH--
Confidence 89999999999999999999999999999988999888888888765434678999999999986532 222222211
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 133 ---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 133 ---KSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ---HHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 12345789999999999999999998765
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-22 Score=122.33 Aligned_cols=106 Identities=20% Similarity=0.217 Sum_probs=84.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCCCC--CHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAM--KPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~--~~~~~~~~ 76 (113)
||||+++|..++..|++++|++++|||++++.+++....|+..+..... ..+.|+++++||+|+.+.. ...+. ..
T Consensus 53 Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~ 131 (190)
T cd04144 53 DTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG-AA 131 (190)
T ss_pred ECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH-HH
Confidence 8999999999999999999999999999999999999999888755322 2578999999999986432 22221 11
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+. ...+++++++||+++.|++++|+++++.+
T Consensus 132 ~~----~~~~~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 132 LA----RRLGCEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred HH----HHhCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 11 12345789999999999999999998754
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=121.89 Aligned_cols=103 Identities=19% Similarity=0.250 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||+|+++|+.++..|+++++++|+|||++++.++.....|+..+.+. ..+.|+++++||+|+.+.. ...++ + +
T Consensus 68 Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~-~-- 141 (219)
T PLN03071 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-T-F-- 141 (219)
T ss_pred ECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-H-H--
Confidence 89999999999999999999999999999999999999999998654 3679999999999985432 22222 1 1
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....++++++|||+++.|++++|++|++.+
T Consensus 142 --~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 142 --HRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred --HHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 122456799999999999999999998765
|
|
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-22 Score=119.41 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=82.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH--HHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH--EIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~ 78 (113)
||+|+++|..++..+++++|++++|||.+++.+++....|+..+.+... ...| ++|+||+|+....+.. .......
T Consensus 55 Dt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~ 132 (182)
T cd04128 55 DLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQA 132 (182)
T ss_pred eCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHHH
Confidence 8999999999999999999999999999999999999999998876432 3467 6789999985322111 0111111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.......++++++|||+++.|++++|+++++.+
T Consensus 133 ~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 133 RKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111222346899999999999999999998654
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-22 Score=117.52 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=85.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++++++++++|+|++++.+++....|...+.+.....++|+++++||+|+.+.. ...+. ..+.
T Consensus 54 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~-~~~~ 132 (164)
T smart00173 54 DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEG-KELA 132 (164)
T ss_pred ECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHH-HHHH
Confidence 89999999999999999999999999999999999998888877654444578999999999986532 22222 1111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. ..+.+++++||+++.|++++|+++++++.
T Consensus 133 ~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 133 R----QWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred H----HcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 1 12357999999999999999999997653
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-22 Score=121.48 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=83.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHH---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEK--- 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~--- 76 (113)
||+|+++|+.++..++.+++++++|||++++.+++... .|+..+... ..+.|+++|+||+|+.+.....+....
T Consensus 54 Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~ 131 (189)
T cd04134 54 DTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGK 131 (189)
T ss_pred ECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccC
Confidence 89999999999999999999999999999999998875 588888653 357899999999999764332211111
Q ss_pred ------hCCCccCC-CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 ------LGLTRIRD-RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ------~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+...... ..+++++|||+++.|++++|+++++.+
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 132 HTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 01111111 236899999999999999999998754
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-22 Score=118.59 Aligned_cols=108 Identities=25% Similarity=0.319 Sum_probs=90.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|||+|+.+...||.+|-++|+|||++.+++|.....|++++-.....+++-.++|+||+|..+ ...+..+.++.
T Consensus 66 DTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~k 142 (209)
T KOG0080|consen 66 DTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLK 142 (209)
T ss_pred eccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHH
Confidence 899999999999999999999999999999999999999999985544446677899999999643 34445555655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.+..++-+++|||++.+|++..|+.++..+
T Consensus 143 fAr~h~~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 143 FARKHRCLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred HHHhhCcEEEEcchhhhccHHHHHHHHHHHH
Confidence 6556677799999999999999999988764
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-21 Score=115.38 Aligned_cols=104 Identities=21% Similarity=0.284 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|++++..++..++..+|++|+|||.+++.++.....|+..+.... .++|+++++||+|+.+.....+..+ +.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-~~-- 129 (166)
T cd00877 55 DTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-FH-- 129 (166)
T ss_pred ECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-HH--
Confidence 899999999999999999999999999999999999999999986643 3799999999999864322222111 11
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....++++++||+++.|++++|++|++.+
T Consensus 130 --~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 130 --RKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred --HHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 23456799999999999999999998765
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=116.80 Aligned_cols=105 Identities=20% Similarity=0.280 Sum_probs=84.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
||+|++++..++..++.++|++++|||.+++.+++....|+..+.+.. ..+.|+++++||.|+.+.... .+....+.
T Consensus 55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~- 132 (161)
T cd04117 55 DTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA- 132 (161)
T ss_pred eCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH-
Confidence 899999999999999999999999999999999999999999886542 246899999999998654321 12222221
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...++++++|||+++.|++++|++|++.
T Consensus 133 ---~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 133 ---KEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ---HHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 1123578999999999999999999875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-22 Score=120.54 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=82.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKP--------- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------- 70 (113)
||+|+++|+.++..++.++|++++|||.+++.+++.. ..|+..+.+. .++.|+++|+||+|+.+....
T Consensus 55 Dt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~ 132 (178)
T cd04131 55 DTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQ 132 (178)
T ss_pred ECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCC
Confidence 8999999999999999999999999999999999996 7899888664 257899999999998642100
Q ss_pred HHHHHHhCCCccCCCCe-EEEeccccCCCC-HHHHHHHHHhh
Q psy17510 71 HEIQEKLGLTRIRDRNW-YVQPSCATTADG-LYEGLTWLTSN 110 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~-i~~~~~~l~~~ 110 (113)
..+....+..+....++ ++++|||+++.+ ++++|..+++.
T Consensus 133 ~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 133 APVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 00111111111223343 689999999995 99999998874
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=121.65 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|++++..++..++.++|++++|||++++.+++....|+..+.+.......|+++++||+|+.+.. ..++. ..+.
T Consensus 58 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~ 136 (211)
T cd04111 58 DTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLA 136 (211)
T ss_pred eCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHH
Confidence 89999999999999999999999999999999999999999988765333467899999999986532 22222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|++|++.+
T Consensus 137 ----~~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 137 ----KDLGMKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred ----HHhCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12336799999999999999999998754
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=117.47 Aligned_cols=107 Identities=20% Similarity=0.322 Sum_probs=83.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~ 77 (113)
||||+++|..++..+++++|++++|+|++++++++....|+..+.+.......|+++|+||+|+.+.... .+.....
T Consensus 55 Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~ 134 (170)
T cd04108 55 DTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL 134 (170)
T ss_pred eCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH
Confidence 8999999999999999999999999999999999999999998865432345789999999998553221 1111111
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...+.+++++||+++.|++++|+.+++.+
T Consensus 135 ~----~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 135 A----AEMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred H----HHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 12235689999999999999999998754
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-22 Score=119.38 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=81.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||+|+++|..++..++.++|++|+|||.+++.+++... .|+..+... ..++|+++++||+|+.+... ..+.+..
T Consensus 55 Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~---~~~~l~~ 129 (175)
T cd01874 55 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPS---TIEKLAK 129 (175)
T ss_pred ECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChh---hHHHhhh
Confidence 89999999999999999999999999999999999986 588777553 25789999999999854311 1111110
Q ss_pred ------------CccCCC-CeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 ------------TRIRDR-NWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ------------~~~~~~-~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...+.. .+++++|||++|.|++++|+.++..
T Consensus 130 ~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 130 NKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred ccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 011112 3689999999999999999999874
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=116.72 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=82.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc--CCCCCeEEEEEeCCCCCCCCC--HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR--EMRDAIILIFANKQDLPDAMK--PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~D~~~~~~--~~~~~~~ 76 (113)
||+|++++..++..++..++++++|||.+++.+++....|+..+.+.. ...++|+++++||+|+.+... ..+. ..
T Consensus 55 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~ 133 (165)
T cd04140 55 DTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG-AA 133 (165)
T ss_pred ECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH-HH
Confidence 899999999999999999999999999999999998888877664421 125789999999999865222 2211 11
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.. ...++++++|||++|.|++++|++|+..
T Consensus 134 ~~----~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 134 CA----TEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred HH----HHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 11 1234578999999999999999999864
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=114.52 Aligned_cols=107 Identities=21% Similarity=0.356 Sum_probs=86.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCCCCCCH-HHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA-IILIFANKQDLPDAMKP-HEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~~~-~~~~~~~~ 78 (113)
||+||++|++..+.||.++-++++|||+++..+++....|+++....-..+.+ .+++|++|+|+.+.... .+-+++++
T Consensus 64 dtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklA 143 (213)
T KOG0091|consen 64 DTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLA 143 (213)
T ss_pred eccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHH
Confidence 89999999999999999999999999999999999999999998776554444 45889999999764331 12222222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++.++++||+++.|+++.|..+++.+
T Consensus 144 ----a~hgM~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 144 ----ASHGMAFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred ----HhcCceEEEecccCCCcHHHHHHHHHHHH
Confidence 23456789999999999999999888754
|
|
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=110.20 Aligned_cols=109 Identities=31% Similarity=0.637 Sum_probs=90.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++..+|++++|+|.+++.++.....|+..+.......++|+++++||+|+.+.....++.+.....
T Consensus 50 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 129 (159)
T cd04159 50 DLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLK 129 (159)
T ss_pred ECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcc
Confidence 79999999999999999999999999999888888877888887665444678999999999987765555565655544
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
......++++++|++++.|++++++++.+
T Consensus 130 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 130 SITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 44445678999999999999999999875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=112.77 Aligned_cols=110 Identities=45% Similarity=0.862 Sum_probs=92.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|+.++...+..+++.++++++|+|.++..++.....++..+.......++|+++++||+|+.+....+++.+.++..
T Consensus 64 D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~ 143 (173)
T cd04155 64 DIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLH 143 (173)
T ss_pred ECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCc
Confidence 79999999999999999999999999999888888877777777654434579999999999997766667777777665
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
......++++++||++++|++++|+||+++
T Consensus 144 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 173 (173)
T cd04155 144 DLRDRTWHIQACSAKTGEGLQEGMNWVCKN 173 (173)
T ss_pred ccCCCeEEEEEeECCCCCCHHHHHHHHhcC
Confidence 555566788999999999999999999863
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=121.37 Aligned_cols=106 Identities=16% Similarity=0.240 Sum_probs=83.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCCCC--CHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAM--KPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~--~~~~~~~~ 76 (113)
||+|++.+..++..|+.++|++|+|||++++.+++....|+..+.+... ..+.|+++|+||+|+.+.. ...+ ...
T Consensus 56 Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~-~~~ 134 (215)
T cd04109 56 DIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDK-HAR 134 (215)
T ss_pred ECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHH-HHH
Confidence 8999999999999999999999999999999999999999888865422 2356899999999986432 2221 111
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+. ...+++++++||++|.|++++|+++++.+
T Consensus 135 ~~----~~~~~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 135 FA----QANGMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred HH----HHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 11 11235788999999999999999998764
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=120.11 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=78.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMK---------- 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---------- 69 (113)
||+|+++ .+...|+.++|++++|||++++.+++... .|+..+... ..+.|+++|+||+|+.+...
T Consensus 72 DTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~ 147 (195)
T cd01873 72 DTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPL 147 (195)
T ss_pred eCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhccccc
Confidence 8999976 35567899999999999999999999886 588887553 25789999999999864100
Q ss_pred ------HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 70 ------PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 70 ------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...+....+....+..++++++|||+++.|++++|+.+++.
T Consensus 148 ~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 148 ARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 01111111222223345689999999999999999999875
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-22 Score=116.40 Aligned_cols=104 Identities=25% Similarity=0.350 Sum_probs=83.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||+||++|.++-+.||.+++++++|||+++.++|+....|+.++.+.. ...+.+++|+||+|+.+... .++ ++.+
T Consensus 68 DTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qe-Ae~Y- 144 (218)
T KOG0088|consen 68 DTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQVTRQE-AEAY- 144 (218)
T ss_pred eccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHH-HHHH-
Confidence 899999999999999999999999999999999999999999997652 35678999999999965422 211 1111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...-+..++++||+.+.||.++|+.|...
T Consensus 145 ---AesvGA~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 145 ---AESVGALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred ---HHhhchhheecccccccCHHHHHHHHHHH
Confidence 11233357799999999999999988754
|
|
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-22 Score=113.78 Aligned_cols=102 Identities=19% Similarity=0.345 Sum_probs=85.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-----PHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-----~~~~~~ 75 (113)
||+|+|+|+.+.-.|+.+|+++|++||.++.+++.....|..++.... ..++|+++++||+|+.++.. ...+++
T Consensus 76 DTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktys-w~naqvilvgnKCDmd~eRvis~e~g~~l~~ 154 (193)
T KOG0093|consen 76 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS-WDNAQVILVGNKCDMDSERVISHERGRQLAD 154 (193)
T ss_pred ecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeee-ccCceEEEEecccCCccceeeeHHHHHHHHH
Confidence 899999999999999999999999999999999999999999885542 47899999999999976432 233444
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.++. .+|++||+.+.+++++|+.++..+
T Consensus 155 ~LGf--------efFEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 155 QLGF--------EFFETSAKENINVKQVFERLVDII 182 (193)
T ss_pred HhCh--------HHhhhcccccccHHHHHHHHHHHH
Confidence 4443 477999999999999999887653
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=114.01 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=81.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHH--
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEK-- 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~-- 76 (113)
||+|++++..++..+++++|++|+|||.+++.+++... .|+..+... ..+.|+++++||+|+.+... .+.+.+.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~ 132 (174)
T cd01871 55 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKL 132 (174)
T ss_pred ECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccC
Confidence 89999999999999999999999999999999999985 587777543 25789999999999864221 1111111
Q ss_pred ------hCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhh
Q psy17510 77 ------LGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 77 ------~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+.......+ +++++|||++|.|++++|+.+++.
T Consensus 133 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 133 TPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 0000111122 478999999999999999999874
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-21 Score=116.00 Aligned_cols=105 Identities=25% Similarity=0.376 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..+++++|++++|||.+++.++.....|+..+.+.. ..+.|+++++||+|+.+.. ..++... +.
T Consensus 57 D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~-~~ 134 (166)
T cd01869 57 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQE-FA 134 (166)
T ss_pred ECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHH-HH
Confidence 899999999999999999999999999999999999999999886542 2568999999999986532 2222222 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 135 ----~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 135 ----DELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred ----HHcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 12356799999999999999999998865
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=116.15 Aligned_cols=105 Identities=18% Similarity=0.295 Sum_probs=84.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|++++..++..++++++++++|+|.+++.+++....|+..+.+.. ....|+++++||+|+.+.. ...+..+ +.
T Consensus 56 Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~ 133 (165)
T cd01865 56 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQ-LA 133 (165)
T ss_pred ECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHH-HH
Confidence 899999999999999999999999999999999999999999886532 2468999999999986532 2222211 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 134 ----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 134 ----DQLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred ----HHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 12345799999999999999999998754
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-22 Score=114.08 Aligned_cols=104 Identities=21% Similarity=0.344 Sum_probs=86.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~ 79 (113)
||+|+|+|+.+...|+.+.|++++|||+++.++|.....|++++.+. +...|-++|+||.|.++..- ..+-+..+.
T Consensus 63 DtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A- 139 (198)
T KOG0079|consen 63 DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFA- 139 (198)
T ss_pred ecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc--CccccceecccCCCCccceeeehHHHHHHH-
Confidence 89999999999999999999999999999999999999999999765 46889999999999876322 112222222
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+++.+|++||+...+++..|.-|.++
T Consensus 140 ---~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 140 ---LQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred ---HhcCchheehhhhhcccchHHHHHHHHH
Confidence 2456679999999999999999877764
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-21 Score=118.57 Aligned_cols=104 Identities=21% Similarity=0.331 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++++.++..++.+++++++|||++++.+++....|+..+... ....|+++++||+|+.+... ..+..+ +.
T Consensus 61 D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~-~~ 137 (199)
T cd04110 61 DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYK-FA 137 (199)
T ss_pred eCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHH-HH
Confidence 89999999999999999999999999999999999999999988653 35689999999999865322 222222 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 138 ----~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 138 ----GQMGISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred ----HHcCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 12346799999999999999999998754
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-21 Score=115.63 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|++++..++..+++++|++++|||++++.+++....|+..+.+.. ..+.|+++++||+|+.+.. ..++..+...
T Consensus 58 D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 136 (167)
T cd01867 58 DTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALAD 136 (167)
T ss_pred eCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886542 2578999999999997532 2222222211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 137 -----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 137 -----EYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred -----HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2345789999999999999999998865
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-21 Score=115.24 Aligned_cols=106 Identities=23% Similarity=0.362 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC----CCCCeEEEEEeCCCCCCC--CCHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE----MRDAIILIFANKQDLPDA--MKPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~~--~~~~~~~ 74 (113)
||+|++++..++..++.+++++|+|+|.+++.+++....|+..+.+... ..+.|+++++||+|+.+. .+..+..
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 134 (168)
T cd04119 55 DLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGR 134 (168)
T ss_pred ECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHH
Confidence 8999999999999999999999999999999999999999988865432 246899999999998632 2232222
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. . ...+++++++||+++.|++++|+++.+.+
T Consensus 135 ~~-~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 135 LW-A----ESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HH-H----HHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 21 1 12335789999999999999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-21 Score=113.57 Aligned_cols=107 Identities=18% Similarity=0.252 Sum_probs=86.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|||+|+++.-.++.+|.+++++||.++..+|-....|+.++..+.-+.+-.+++++||+|+.+.... .+.....
T Consensus 73 DTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V---s~~qa~~ 149 (219)
T KOG0081|consen 73 DTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV---SEDQAAA 149 (219)
T ss_pred ccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh---hHHHHHH
Confidence 8999999999999999999999999999999999999999999988877788889999999999764221 1111111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
....-++|+|++||.+|.++++..+.|...
T Consensus 150 La~kyglPYfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 150 LADKYGLPYFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred HHHHhCCCeeeeccccCcCHHHHHHHHHHH
Confidence 122345679999999999999888776643
|
|
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=117.60 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=87.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc--------CCCCCeEEEEEeCCCCCC--CCCH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR--------EMRDAIILIFANKQDLPD--AMKP 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~D~~~--~~~~ 70 (113)
||+|++.|..++..++.++|++|+|||++++.+++....|+.++.... ...++|+++++||+|+.. ....
T Consensus 54 Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~ 133 (247)
T cd04143 54 DTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQR 133 (247)
T ss_pred ECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCH
Confidence 899999999999999999999999999999999999999988886431 225789999999999864 3344
Q ss_pred HHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 71 HEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.++.+..+. ...+.++++||+++.|++++|++|++...
T Consensus 134 ~ei~~~~~~----~~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 134 DEVEQLVGG----DENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 555444332 13567999999999999999999987653
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-21 Score=114.12 Aligned_cols=105 Identities=19% Similarity=0.326 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++.+++++++|+|++++.+++....|+..+.+.. ..+.|+++++||+|+.+.. ..++......
T Consensus 58 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~ 136 (165)
T cd01868 58 DTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE 136 (165)
T ss_pred eCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886643 2468999999999986532 2222222211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++...+
T Consensus 137 -----~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 137 -----KNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred -----HcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 1346799999999999999999998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-21 Score=115.57 Aligned_cols=108 Identities=17% Similarity=0.288 Sum_probs=86.1
Q ss_pred CCCCccCch-hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhC
Q psy17510 1 DVGGQDKIR-PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~-~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~ 78 (113)
||+|+++++ .++..+++++|++++|||++++.++.....|+..+.......++|+++++||+|+...... .+....+.
T Consensus 57 Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 136 (170)
T cd04115 57 DTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA 136 (170)
T ss_pred eCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH
Confidence 899999987 5789999999999999999999999999999988876544467999999999998653321 12222222
Q ss_pred CCccCCCCeEEEeccccC---CCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATT---ADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~---~~~i~~~~~~l~~~~~ 112 (113)
. ...++++++||++ +.+++++|.++++.++
T Consensus 137 ~----~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 137 D----AHSMPLFETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred H----HcCCcEEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence 1 2336799999999 8899999999998764
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-21 Score=114.17 Aligned_cols=105 Identities=15% Similarity=0.254 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH-HHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE-IQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~-~~~~~~~ 79 (113)
||||++++..+++.++.++|++++|+|.+++.+++....|+..+.+.. .+.|+++|+||+|+.+...... ..+.+.
T Consensus 58 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~- 134 (164)
T cd04101 58 DSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA- 134 (164)
T ss_pred ECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH-
Confidence 899999999999999999999999999999999998899998886542 5689999999999865432111 112121
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 135 ---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 135 ---QANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ---HHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 12345789999999999999999998864
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-21 Score=114.05 Aligned_cols=107 Identities=16% Similarity=0.224 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++|..+++.+++.++++++|+|.+++.+++....|...+.+.....+.|+++++||+|+.+... ..+... +.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~ 133 (168)
T cd04177 55 DTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LS 133 (168)
T ss_pred eCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HH
Confidence 899999999999999999999999999999999999998888886544446799999999999865322 222111 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ...++++++||+++.|++++|++++.++
T Consensus 134 ~~---~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 134 QQ---WGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred HH---cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 11 1225799999999999999999998754
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-21 Score=116.80 Aligned_cols=105 Identities=22% Similarity=0.371 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+.+.. ..+.|+++++||+|+... ....+. +.+.
T Consensus 56 Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~-~~l~ 133 (191)
T cd04112 56 DTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDG-ERLA 133 (191)
T ss_pred eCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHH-HHHH
Confidence 899999999999999999999999999999999999999998886542 247899999999998532 222222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 134 ----~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 134 ----KEYGVPFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred ----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11345799999999999999999998764
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=110.67 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=82.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|+++|..++..+++++|++++|+|.+++.+++....|+..+.+. ..++|+++++||+|+.+.. ..+ ...+.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~-~~~~~-- 128 (161)
T cd04124 55 DTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQK-KFNFA-- 128 (161)
T ss_pred eCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHH-HHHHH--
Confidence 89999999999999999999999999999998999888999888653 2578999999999984321 111 11111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+.+++.+
T Consensus 129 --~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 129 --EKHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred --HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12346799999999999999999998754
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-20 Score=110.93 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC---CCCCeEEEEEeCCCCCCC-CCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPDA-MKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~-~~~~~~~~~ 76 (113)
||||+++++.++..+++.+|++++|||++++.+++....|...+..... ..+.|+++++||+|+.+. ...++..+.
T Consensus 60 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 139 (170)
T cd04116 60 DTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAW 139 (170)
T ss_pred eCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHH
Confidence 8999999999999999999999999999999999998889887755321 246899999999998642 333333332
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... ...++++++||+++.|+.++|+++++.+
T Consensus 140 ~~~----~~~~~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 140 CRE----NGDYPYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred HHH----CCCCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 211 1224689999999999999999998753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-21 Score=113.92 Aligned_cols=105 Identities=13% Similarity=0.242 Sum_probs=77.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|++. ..|++.+|++++|||.+++.+++....|+..+.......+.|+++++||.|+.... ..++....+..
T Consensus 53 D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~ 126 (158)
T cd04103 53 DEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQ 126 (158)
T ss_pred ECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHH
Confidence 7889875 34678899999999999999999999999999765444678999999999974211 11111111111
Q ss_pred ccCC-CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRD-RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+. ..+++++|||+++.|++++|+.+++.+
T Consensus 127 ~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~~ 158 (158)
T cd04103 127 LCADMKRCSYYETCATYGLNVERVFQEAAQKI 158 (158)
T ss_pred HHHHhCCCcEEEEecCCCCCHHHHHHHHHhhC
Confidence 1111 246899999999999999999998753
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-21 Score=113.86 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=85.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCC---CCCeEEEEEeCCCCCCCCCHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM---RDAIILIFANKQDLPDAMKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~ 77 (113)
||+|||||+++.-.+|.+||.+++|||++++.+++....|-++++..+.. ..-|++++|||+|+.+..+. .+....
T Consensus 64 DTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r-~VS~~~ 142 (210)
T KOG0394|consen 64 DTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR-QVSEKK 142 (210)
T ss_pred ecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc-eeeHHH
Confidence 89999999999999999999999999999999999999999988765332 34699999999998653211 111111
Q ss_pred CCCcc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..... ....+|+|++|||...++.+.|..+++..
T Consensus 143 Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 143 AQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred HHHHHHhcCCceeEEecccccccHHHHHHHHHHHH
Confidence 11111 23567999999999999999999887653
|
|
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-21 Score=113.14 Aligned_cols=103 Identities=18% Similarity=0.307 Sum_probs=83.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..+++++|++++|+|++++.+++....|+..+.+. ..++|+++++||+|+.+.. +.++.... .
T Consensus 57 D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~-~ 133 (162)
T cd04106 57 DTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEAL-A 133 (162)
T ss_pred eCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHH-H
Confidence 89999999999999999999999999999999999999998888543 3579999999999986532 22222211 1
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...+++++++||+++.|++++++++...
T Consensus 134 ----~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 134 ----KRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred ----HHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 1234579999999999999999999864
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=117.18 Aligned_cols=108 Identities=10% Similarity=0.148 Sum_probs=80.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HH------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKP-HE------ 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~------ 72 (113)
||+|+++|..++..++.++|++|+|||.+++.+++... .|...+... .++.|+++|+||+|+.+.... ..
T Consensus 55 Dt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~ 132 (222)
T cd04173 55 DTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRL 132 (222)
T ss_pred eCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccC
Confidence 89999999999999999999999999999999999985 566655432 367999999999999653211 11
Q ss_pred --HHHHhCCCccCCCC-eEEEeccccCCC-CHHHHHHHHHhh
Q psy17510 73 --IQEKLGLTRIRDRN-WYVQPSCATTAD-GLYEGLTWLTSN 110 (113)
Q Consensus 73 --~~~~~~~~~~~~~~-~~~~~~sa~~~~-~i~~~~~~l~~~ 110 (113)
+....+.......+ +++++|||+++. |++++|+.++..
T Consensus 133 ~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 133 IPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred CccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 11111111112234 479999999988 599999988764
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=9e-21 Score=115.34 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=81.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCC------CHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAM------KPHEI 73 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------~~~~~ 73 (113)
||||++++..++..+++++|++++|||.+++.+++... .|+..+... ..+.|+++++||+|+.+.. ...+.
T Consensus 55 Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~ 132 (187)
T cd04132 55 DTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQA 132 (187)
T ss_pred ECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHH
Confidence 89999999999999999999999999999999999885 587777543 2578999999999986532 12211
Q ss_pred HHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 74 QEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 74 ~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.+. ...++ +++++||+++.|+.++|+++++.+
T Consensus 133 -~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 133 -ESVA----KKQGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred -HHHH----HHcCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 1111 11223 689999999999999999998754
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=113.48 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=81.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHH----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQ---- 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~---- 74 (113)
||||++++..++..++.++|++++|||.+++.+++... .|+..+... ..++|+++++||+|+.+... ..++.
T Consensus 52 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 129 (174)
T smart00174 52 DTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQ 129 (174)
T ss_pred ECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccC
Confidence 89999999999999999999999999999999999885 588887653 25799999999999865221 10110
Q ss_pred ----HHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 ----EKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ----~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...........+ .++++|||+++.|++++|+.+++.+
T Consensus 130 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 130 EPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred CCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 000000111122 3789999999999999999998754
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=113.13 Aligned_cols=105 Identities=22% Similarity=0.317 Sum_probs=85.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||+|++++..++..+++.+|++++|+|++++.+++....|+..+.+.. .+++|+++++||+|+.+. .+..+......
T Consensus 59 Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T cd01866 59 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK 137 (168)
T ss_pred ECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886542 257899999999998643 23333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|.++++.+
T Consensus 138 -----~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 138 -----EHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred -----HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2345799999999999999999998764
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=112.15 Aligned_cols=105 Identities=21% Similarity=0.311 Sum_probs=84.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..+++++|++++|+|++++.++.....|+..+.... ..++|+++++||+|+.+.. +..+......
T Consensus 55 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 133 (161)
T cd04113 55 DTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ 133 (161)
T ss_pred ECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999988875432 3678999999999986532 2333322222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++++.+
T Consensus 134 -----~~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 134 -----ENGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred -----HcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 1236799999999999999999998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-21 Score=111.35 Aligned_cols=105 Identities=25% Similarity=0.396 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~ 79 (113)
||+||+||++....|+..||++|+|+|++-+++|+...+|+.++.+... .++--++|+||+|+.+... .+++.+.++
T Consensus 62 dtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qigeefs- 139 (213)
T KOG0095|consen 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIGEEFS- 139 (213)
T ss_pred eccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHHHHHH-
Confidence 8999999999999999999999999999999999999999999966532 4566799999999866322 334444444
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
....+.++++||+..++++.+|..++-.
T Consensus 140 ---~~qdmyfletsakea~nve~lf~~~a~r 167 (213)
T KOG0095|consen 140 ---EAQDMYFLETSAKEADNVEKLFLDLACR 167 (213)
T ss_pred ---HhhhhhhhhhcccchhhHHHHHHHHHHH
Confidence 2244568899999999999999877643
|
|
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=115.02 Aligned_cols=109 Identities=22% Similarity=0.309 Sum_probs=89.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|++.|..+...|+.++|++++||+++++.+|+....+...+.+.+.....|+++||||+|+... .++....+..
T Consensus 57 Dt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~ 133 (196)
T KOG0395|consen 57 DTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKA 133 (196)
T ss_pred cCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHH
Confidence 8999999999999999999999999999999999999999999966665567899999999999763 1222222222
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.....+++++++||+...+++++|..|++.++
T Consensus 134 la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~ 165 (196)
T KOG0395|consen 134 LARSWGCAFIETSAKLNYNVDEVFYELVREIR 165 (196)
T ss_pred HHHhcCCcEEEeeccCCcCHHHHHHHHHHHHH
Confidence 23345667999999999999999999988654
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-20 Score=110.03 Aligned_cols=106 Identities=18% Similarity=0.296 Sum_probs=83.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+.. ...+..+...
T Consensus 58 D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 136 (165)
T cd01864 58 DTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE 136 (165)
T ss_pred ECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886532 3578999999999986532 2222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .....++++||+++.|++++|+++++.+
T Consensus 137 -~---~~~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 137 -K---NGMLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred -H---cCCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 1 1124688999999999999999998753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-21 Score=112.97 Aligned_cols=111 Identities=37% Similarity=0.766 Sum_probs=99.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL- 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~- 79 (113)
|.+||+..+++|..||.-||++|+++|++++++++.....++.+..+....++|+++.+||.|+.+....+++...++.
T Consensus 75 dlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~ 154 (197)
T KOG0076|consen 75 DLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLA 154 (197)
T ss_pred EcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhh
Confidence 6899999999999999999999999999999999999988888887777789999999999999988888888777773
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+.+++..+||.+|.|+++...|++..+
T Consensus 155 e~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 155 ELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred hhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 34456788999999999999999999998764
|
|
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=114.12 Aligned_cols=106 Identities=24% Similarity=0.335 Sum_probs=84.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
||+|++++..++..+++++|++++|||++++.+++....|+..+.... ..+.|+++++||+|+.+.... .+....+.
T Consensus 55 Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~- 132 (188)
T cd04125 55 DTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC- 132 (188)
T ss_pred ECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH-
Confidence 899999999999999999999999999999999999999999886542 245899999999998753321 12222221
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 133 ---~~~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 133 ---DSLNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred ---HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12345799999999999999999998764
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=116.81 Aligned_cols=106 Identities=21% Similarity=0.317 Sum_probs=85.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
||+|++++..++..++++++++++|||.+++.+++....|+..+.+.. ..+.|+++++||+|+.+.... .+....+..
T Consensus 67 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~ 145 (216)
T PLN03110 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAE 145 (216)
T ss_pred ECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999998886542 257899999999998653321 222232221
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|++++..+
T Consensus 146 ----~~~~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 146 ----KEGLSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred ----HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2356899999999999999999998654
|
|
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-20 Score=107.38 Aligned_cols=106 Identities=20% Similarity=0.292 Sum_probs=85.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+||++|++..+.||.+|.+.++|+|+++.++|+....|+..++... .+++-+++++||.|+.++.... -...-.
T Consensus 64 DTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL~~~R~Vt---flEAs~ 139 (214)
T KOG0086|consen 64 DTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDLDPEREVT---FLEASR 139 (214)
T ss_pred ecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhcChhhhhh---HHHHHh
Confidence 899999999999999999999999999999999999999999997643 4788999999999997643322 111112
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+...+.+-++++||++|.++++.|-..++.
T Consensus 140 FaqEnel~flETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 140 FAQENELMFLETSALTGENVEEAFLKCART 169 (214)
T ss_pred hhcccceeeeeecccccccHHHHHHHHHHH
Confidence 223345568899999999999988766543
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-20 Score=113.61 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=82.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC------CHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------KPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------~~~~~~ 74 (113)
||+|++++..++..++.++|++++|||.+++.+++....|+..+.+. ..+.|+++|+||+|+.+.. ...+..
T Consensus 56 D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~ 133 (193)
T cd04118 56 DTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQ 133 (193)
T ss_pred ECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHH
Confidence 89999999999999999999999999999999999888899888653 2478999999999985421 111111
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+ +. ...+++++++||+++.|++++|+++++.+
T Consensus 134 ~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 134 D-FA----DEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred H-HH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 11 12345789999999999999999998754
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=111.78 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-C--CHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-M--KPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~--~~~~~~~~~ 77 (113)
||+|+++|..++..++..+|++++|+|++++.+++....|+..+.+.....++|+++++||+|+.+. . ...+..+..
T Consensus 53 D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~ 132 (198)
T cd04147 53 DTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTV 132 (198)
T ss_pred ECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHH
Confidence 8999999999999999999999999999999999999999888876544457999999999998652 1 122222211
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.. ..+.+++++||++|.|++++|+++++.+.
T Consensus 133 ~~----~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 133 EL----DWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred Hh----hcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 11 12346889999999999999999988653
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-20 Score=110.02 Aligned_cols=105 Identities=24% Similarity=0.343 Sum_probs=84.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..+++++|++++|+|.+++.+++....|+..+.... ..+.|+++++||+|+.+.. ...+......
T Consensus 55 D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~ 133 (161)
T cd01861 55 DTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK 133 (161)
T ss_pred ECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886542 2369999999999985422 2222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 134 -----~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 134 -----ELNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred -----HhCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1246789999999999999999998753
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=107.21 Aligned_cols=105 Identities=26% Similarity=0.376 Sum_probs=85.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~ 79 (113)
||||++++..++..+++.+|++++|+|.+++.+++....|+..+.......+.|+++++||+|+... ....+..+...
T Consensus 55 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~- 133 (161)
T cd01863 55 DTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR- 133 (161)
T ss_pred ECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-
Confidence 8999999999999999999999999999999999999889888876554568999999999998632 23332222111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+++++++||++|.|++++++++.+.
T Consensus 134 ----~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 134 ----KHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ----HcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 235679999999999999999998865
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-20 Score=114.33 Aligned_cols=106 Identities=21% Similarity=0.291 Sum_probs=81.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHH-HHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ-ELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~ 77 (113)
||||+++|..++..++.++|++++|||.+++.++..... |...+.......+.|+++|+||+|+..... ..+... +
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-~ 146 (211)
T PLN03118 68 DTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-L 146 (211)
T ss_pred ECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-H
Confidence 899999999999999999999999999999989988865 544443322235679999999999865322 222211 1
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...+++++++||+++.|++++|++|.+.+
T Consensus 147 ~----~~~~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 147 A----KEHGCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred H----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 12345789999999999999999998754
|
|
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-20 Score=109.84 Aligned_cols=105 Identities=24% Similarity=0.354 Sum_probs=85.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
|+||++++..++..+++++|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+.. +..+..+...
T Consensus 56 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 134 (163)
T cd01860 56 DTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYAD 134 (163)
T ss_pred eCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886653 2678999999999986432 3333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|+.++++++++.+
T Consensus 135 -----~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 135 -----ENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred -----HcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 1235799999999999999999998865
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-20 Score=111.80 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=79.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKP--------- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------- 70 (113)
||||++++..++..+++++|++++|||.+++.+++... .|+..+.+. ..+.|+++++||+|+.+....
T Consensus 54 Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 131 (173)
T cd04130 54 DTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGE 131 (173)
T ss_pred ECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCC
Confidence 89999999999999999999999999999999998875 688777543 256899999999998643210
Q ss_pred ----HHHHHHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHh
Q psy17510 71 ----HEIQEKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 71 ----~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
.+-...+. ...+ +++++|||+++.|++++|+.++.
T Consensus 132 ~~v~~~~~~~~a----~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 132 KPVSQSRAKALA----EKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCcCHHHHHHHH----HHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 00111111 1122 37999999999999999998875
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=103.49 Aligned_cols=112 Identities=42% Similarity=0.792 Sum_probs=101.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|.+|+-..+.+|+.||.+.+++|||+|.++.+...-....+..++++++.++..+++++||.|........++...+++.
T Consensus 68 dLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~ 147 (182)
T KOG0072|consen 68 DLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQ 147 (182)
T ss_pred EccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChH
Confidence 67899999999999999999999999999988888777788888888888889999999999998877888888888888
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.++..-|.++++||.+|.|++.+.+||.+.++
T Consensus 148 ~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 148 KLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred HHhhheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 88778899999999999999999999998654
|
|
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-20 Score=109.84 Aligned_cols=106 Identities=23% Similarity=0.250 Sum_probs=80.2
Q ss_pred CCCCccCc-hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-CCCCeEEEEEeCCCCCCCC--CHHHHHHH
Q psy17510 1 DVGGQDKI-RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDAM--KPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~--~~~~~~~~ 76 (113)
||||++++ ...+..++..+|++++|+|++++.+++....|+..+..... ..+.|+++++||+|+.+.. +..+. ..
T Consensus 53 D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~ 131 (165)
T cd04146 53 DTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEG-EK 131 (165)
T ss_pred ECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHH-HH
Confidence 89999863 45677789999999999999999999998888877765432 3579999999999985432 22221 11
Q ss_pred hCCCccCCCCeEEEeccccCC-CCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTA-DGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~-~~i~~~~~~l~~~~ 111 (113)
+. ...+++++++||+++ .|++++|+++++.+
T Consensus 132 ~~----~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 132 LA----SELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred HH----HHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 11 112357999999999 59999999998765
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-20 Score=108.59 Aligned_cols=105 Identities=22% Similarity=0.407 Sum_probs=85.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
|+||++++..++..+++.+|++++|||++++.+++....|+..+..... .++|+++++||+|+.+. ...+...+ +.
T Consensus 55 D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~~ 132 (164)
T smart00175 55 DTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-FA 132 (164)
T ss_pred ECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-HH
Confidence 8999999999999999999999999999999999998889988865432 57999999999998652 22222222 22
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..+++++++|++++.|++++++++.+.+
T Consensus 133 ~----~~~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 133 E----EHGLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred H----HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 2345799999999999999999998765
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=8e-20 Score=114.06 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=79.9
Q ss_pred CCCCccCchhhHHhhhc-CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYT-GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~-~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~ 77 (113)
||+|++ ......++. ++|++++|||++++.+++....|+..+.+.....++|+++|+||+|+.+... .++. ..+
T Consensus 56 Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~ 132 (221)
T cd04148 56 DHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RAC 132 (221)
T ss_pred eCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHH
Confidence 899998 334455666 9999999999999999999989988886654346799999999999865322 2211 111
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. ...+++++++||+++.|++++|+++++.+.
T Consensus 133 a----~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 133 A----VVFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred H----HHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1 123457899999999999999999998764
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-20 Score=108.02 Aligned_cols=105 Identities=24% Similarity=0.305 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
|++|++++..++..+++++|++++|+|.+++.+++....|+..+..... .++|+++++||+|+.+.. ..+++.+...
T Consensus 55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~ 133 (162)
T cd04123 55 DTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK 133 (162)
T ss_pred ECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH
Confidence 8999999999999999999999999999999999988888888765422 378999999999986532 2223222211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++|++++.|++++++++.+.+
T Consensus 134 -----~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 134 -----SVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred -----HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 2345789999999999999999998764
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-19 Score=106.45 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=80.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-----CHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-----KPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-----~~~~~~~ 75 (113)
|++|++++..++..|+.++|++++|+|.+++.+++....|+..+... .++|+++|+||+|+.+.. ..+++.+
T Consensus 60 d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 136 (169)
T cd01892 60 EVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCR 136 (169)
T ss_pred ecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHH
Confidence 78999999999999999999999999999998998888888876332 478999999999985432 1234444
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.++.. +++++||+++.|++++|+.+++.+
T Consensus 137 ~~~~~-------~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 137 KLGLP-------PPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred HcCCC-------CCEEEEeccCccHHHHHHHHHHHh
Confidence 33321 247999999999999999998754
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-19 Score=104.52 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..+++.++++++|+|.+++.++.....|+..+.......++|+++++||+|+.+. ....+......
T Consensus 54 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~ 133 (164)
T cd04139 54 DTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR 133 (164)
T ss_pred ECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH
Confidence 7999999999999999999999999999999999999888888876544467999999999998652 22222111111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+++
T Consensus 134 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 134 -----QWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred -----HhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1235789999999999999999998764
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=112.75 Aligned_cols=105 Identities=22% Similarity=0.347 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||+|++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+. .+..+..+..
T Consensus 61 Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~- 138 (210)
T PLN03108 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA- 138 (210)
T ss_pred eCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-
Confidence 899999999999999999999999999999999999888988775432 257899999999998653 2333222221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++++.+
T Consensus 139 ----~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 139 ----KEHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12346799999999999999999998654
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-19 Score=105.48 Aligned_cols=106 Identities=23% Similarity=0.320 Sum_probs=86.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC--CCCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD--AMKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~ 78 (113)
|++|++++..++..++.++|++|+|||++++.+++....|+..+..... .+.|+++++||.|+.+ ..+.++..+...
T Consensus 54 D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~ 132 (162)
T PF00071_consen 54 DTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK 132 (162)
T ss_dssp EETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH
Confidence 7899999999999999999999999999999999999999999876532 4689999999999875 334433322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+.++++|||+++.|+.++|..+++.+.
T Consensus 133 -----~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 133 -----ELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp -----HTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred -----HhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 12367999999999999999999998763
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=103.71 Aligned_cols=107 Identities=15% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC---CCCCeEEEEEeCCCCCC--CCCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPD--AMKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~--~~~~~~~~~ 75 (113)
|+||++.+..++..+++++|++|+|+|++++.+++....|...+..... ..++|+++++||+|+.. ....++...
T Consensus 55 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 134 (172)
T cd01862 55 DTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQ 134 (172)
T ss_pred eCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHH
Confidence 8999999999999999999999999999998888888788776644321 23789999999999973 223333322
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... ...++++++||+++.|++++++++.+.+
T Consensus 135 ~~~~----~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 135 WCQS----NGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred HHHH----cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 2221 1235799999999999999999988654
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=108.66 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=81.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHH----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE---- 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~---- 75 (113)
||||++.+..++..++.++|++++|+|.+++.+++... .|+..+... ..++|+++++||+|+.+.........
T Consensus 54 Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~ 131 (174)
T cd04135 54 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKE 131 (174)
T ss_pred eCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccC
Confidence 89999999999999999999999999999999988885 577776543 36799999999999865321111000
Q ss_pred -----HhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 -----KLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 -----~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+.......+ .++++|||+++.|++++|+.++..+
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 132 KPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 00000111223 3689999999999999999998754
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-20 Score=103.76 Aligned_cols=102 Identities=20% Similarity=0.346 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-----CCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-----MKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~ 75 (113)
||+||++|++....|+.+||++++++|+.+..+|+.+..|+.++.+... ..+.+.+++||+|+... ...+.+++
T Consensus 53 dtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~ 131 (192)
T KOG0083|consen 53 DTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAE 131 (192)
T ss_pred eccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHH
Confidence 8999999999999999999999999999999999999999999865421 35678999999998442 22445666
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.++++ +.++||++|.+++..|-.+...+
T Consensus 132 ~y~ip--------fmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 132 AYGIP--------FMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred HHCCC--------ceeccccccccHhHHHHHHHHHH
Confidence 66654 55999999999999998887654
|
|
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-19 Score=106.37 Aligned_cols=106 Identities=20% Similarity=0.288 Sum_probs=82.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
|++|++.+...+..++..+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+.... .+..+.+..
T Consensus 62 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~ 140 (169)
T cd04114 62 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFSD 140 (169)
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH
Confidence 799999999999999999999999999999888888888887775432 246899999999998653321 222222221
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++++++||+++.|+.++|+++.+.+
T Consensus 141 ----~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 141 ----AQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred ----HcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1235789999999999999999998754
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=103.12 Aligned_cols=107 Identities=16% Similarity=0.070 Sum_probs=80.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~ 76 (113)
||||++++...+..++..+|++++|+|++++.+++... .|+..+.... .+.|+++++||+|+.+.... .+....
T Consensus 53 Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~ 130 (166)
T cd01893 53 DTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLP 130 (166)
T ss_pred eCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHH
Confidence 89999999888888899999999999999999998875 5777665432 47899999999999764432 111111
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... +. ...++++|||+++.|++++|+.+.+.+
T Consensus 131 ~~~~-~~-~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 131 IMNE-FR-EIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HHHH-Hh-cccEEEEeccccccCHHHHHHHHHHHh
Confidence 1100 00 112688999999999999999988764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.5e-19 Score=106.29 Aligned_cols=106 Identities=23% Similarity=0.303 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||+++++.++..++..++++++|+|.++..+++....|+..+.+.....+.|+++++||+|+... ....+... +.
T Consensus 55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~ 133 (180)
T cd04137 55 DTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE-LA 133 (180)
T ss_pred ECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH-HH
Confidence 8999999999999999999999999999999999999888888876543457899999999998642 22222211 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|+.+++.++.+.+
T Consensus 134 ----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 134 ----ESWGAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred ----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11235789999999999999999998764
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-18 Score=105.02 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=78.3
Q ss_pred CCCCccCchh--------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc--CCCCCeEEEEEeCCCCCCCC--
Q psy17510 1 DVGGQDKIRP--------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR--EMRDAIILIFANKQDLPDAM-- 68 (113)
Q Consensus 1 D~~G~~~~~~--------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~D~~~~~-- 68 (113)
||||++++.. ....+++.+|++++|||++++.+++....|+..+.+.. ...++|+++++||+|+.+..
T Consensus 55 Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~ 134 (198)
T cd04142 55 DVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA 134 (198)
T ss_pred eCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc
Confidence 7888765421 23346789999999999999999999999988886543 13578999999999996532
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+..+... +..++++++|||++|.|++++|+.+++.+
T Consensus 135 ~~~~~~~~~~----~~~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 135 PRHVLSVLVR----KSWKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred cHHHHHHHHH----HhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 2222211111 11356799999999999999999998654
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-18 Score=101.84 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=76.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
||||++++..++..++..+|++|+|+|+++..+......|.... . .++|+++++||+|+.+... .+++.+.+
T Consensus 73 Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~ 147 (179)
T cd01890 73 DTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSADPERVKQQIEDVL 147 (179)
T ss_pred ECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 89999999999999999999999999998765555444443322 2 4689999999999864321 12333333
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+. ...+++++||++|.|++++++++.+.+.
T Consensus 148 ~~-----~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 148 GL-----DPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CC-----CcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 32 1235889999999999999999988753
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-18 Score=102.37 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=79.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~ 78 (113)
||+|++++..++..++.++|++++|+|.+++.+++... .|+..+.+. ..++|+++++||+|+.+.... .++.....
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~ 132 (175)
T cd01870 55 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQ 132 (175)
T ss_pred eCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccC
Confidence 89999999999888999999999999999988888875 577766543 257899999999998643211 11110000
Q ss_pred --------CCccCC-CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 --------LTRIRD-RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 --------~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...... ..+++++|||+++.|++++|+++++..
T Consensus 133 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 133 EPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred CCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 000001 234789999999999999999998754
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=103.04 Aligned_cols=106 Identities=20% Similarity=0.279 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
|+||++.+..++..+++.+|++++|+|.+++.+++....|+..+.+.....+.|+++++||+|+.+. ...++......
T Consensus 53 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 132 (160)
T cd00876 53 DTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK 132 (160)
T ss_pred ECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH
Confidence 7999999999999999999999999999999899998888888866543357999999999998652 22222222211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++|++++.|+++++++|.+.+
T Consensus 133 -----~~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 133 -----EWGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred -----HcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 1225789999999999999999998753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=98.00 Aligned_cols=103 Identities=23% Similarity=0.371 Sum_probs=83.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC--CCCCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP--DAMKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~--~~~~~~~~~~~~~ 78 (113)
|+||++.+...+..+++++|++++|+|.+++.+++....|+..+.... ..+.|+++++||+|+. ......++.+...
T Consensus 55 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 133 (159)
T cd00154 55 DTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK 133 (159)
T ss_pred ecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH
Confidence 899999999999999999999999999999888998888998886642 2468999999999995 2233333333222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
...++++++||+++.|++++++++.+
T Consensus 134 -----~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 134 -----ENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred -----HcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 13567999999999999999999863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-18 Score=102.79 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=84.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||+||+.|..++...|.++|.++++|++.++.+++.. ..|+.++... .++.|+++||+|.|++++....+-....+.
T Consensus 59 DTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~ 136 (198)
T KOG0393|consen 59 DTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGL 136 (198)
T ss_pred ecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccC
Confidence 8999999999998899999999999999999999986 6899999776 489999999999999853321111111111
Q ss_pred Ccc---------CC-CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRI---------RD-RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~---------~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... .. ....+++|||++..|++++|+..++..
T Consensus 137 ~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 137 EPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred CcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHH
Confidence 111 11 225699999999999999999887653
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-18 Score=104.28 Aligned_cols=105 Identities=13% Similarity=0.195 Sum_probs=79.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-H--------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMK-P-------- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~-------- 70 (113)
||+|++++...+..++.+++++++++|.+++.+++... .|+..+.+. ..+.|+++++||+|+.+... .
T Consensus 55 Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~ 132 (187)
T cd04129 55 DTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRF 132 (187)
T ss_pred ECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCc
Confidence 78999999888777889999999999999988998886 588887653 25699999999999854211 0
Q ss_pred --HHHHHHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 71 --HEIQEKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 71 --~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+....+. +..+ +++++|||+++.|++++|+++.+.+
T Consensus 133 ~~~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 133 VPIQQGKRVA----KEIGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred CCHHHHHHHH----HHhCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 01111111 1122 3689999999999999999998764
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-18 Score=97.63 Aligned_cols=111 Identities=42% Similarity=0.798 Sum_probs=100.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++||...+..|..||.+.|++|||+|.++...+++....+.+++........|+++..||.|+..+...++++.+....
T Consensus 68 DiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~ 147 (185)
T KOG0074|consen 68 DIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLA 147 (185)
T ss_pred ecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchh
Confidence 78999999999999999999999999988888899888888888777666789999999999998888888998888888
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.++.+.|++.+|||+++.|+.+..+|+.+..
T Consensus 148 ~lrdRswhIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 148 GLRDRSWHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred hhhhceEEeeeCccccccCccCcchhhhcCC
Confidence 8888899999999999999999999887654
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-18 Score=101.92 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=78.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH-------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHE------- 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~------- 72 (113)
||||++++...+..++..+|++++|+|++++.++.... .|+..+... ..++|+++++||+|+.+......
T Consensus 54 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 131 (171)
T cd00157 54 DTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKE 131 (171)
T ss_pred eCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCC
Confidence 89999999888888999999999999999988887764 466666543 24799999999999865432210
Q ss_pred -HHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHh
Q psy17510 73 -IQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 73 -~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
+............++ +++++||+++.|++++++++++
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 132 PITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred ccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 001111111111223 7999999999999999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=95.12 Aligned_cols=105 Identities=21% Similarity=0.330 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH-HHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH-EIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~ 79 (113)
||+||++|+...+.|+.++.+.+.|+|++.+.++.....|+....... .++..+++++||.|+....+.. +-.+.+..
T Consensus 66 dtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~fae 144 (215)
T KOG0097|consen 66 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAE 144 (215)
T ss_pred ecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHh
Confidence 899999999999999999999999999999999999999999886542 3677899999999997654422 33333332
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+++-++++||++|+++++.|-....+
T Consensus 145 ----engl~fle~saktg~nvedafle~akk 171 (215)
T KOG0097|consen 145 ----ENGLMFLEASAKTGQNVEDAFLETAKK 171 (215)
T ss_pred ----hcCeEEEEecccccCcHHHHHHHHHHH
Confidence 356678899999999999988765544
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=98.33 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=82.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|++++..++..++..++++++|+|.++..++.....|+..+... ..+.|+++++||+|+.+.....+....
T Consensus 64 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~~~---- 137 (215)
T PTZ00132 64 DTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQITF---- 137 (215)
T ss_pred ECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHHHH----
Confidence 79999999999999999999999999999999999999998888643 357899999999998543221111111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....++.++++||+++.|++++|.++++.+
T Consensus 138 -~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 138 -HRKKNLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred -HHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112345789999999999999999998764
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=94.73 Aligned_cols=108 Identities=23% Similarity=0.175 Sum_probs=74.7
Q ss_pred CCCCcc----CchhhHHh---hhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCc-CCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQD----KIRPLWRH---YYTGTQGLIFVVDCADR-DRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~----~~~~~~~~---~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||||+. ..+.+... .+..+|++++|+|++++ .+++....|.+.+.... ...++|+++++||+|+.+.....
T Consensus 54 DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 133 (170)
T cd01898 54 DIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELF 133 (170)
T ss_pred ecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhH
Confidence 899963 22223333 34569999999999988 67888788877775432 12468999999999986644333
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....+... ....+++++||+++.|++++++++.+.+
T Consensus 134 ~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 134 ELLKELLKE---LWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred HHHHHHHhh---CCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 222222111 0245689999999999999999998753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.6e-16 Score=91.98 Aligned_cols=103 Identities=26% Similarity=0.344 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|||||+||+.||+-+.+++.+.|+++|.+.+..+ .....++.+... ..+|+++++||+|+.+..+.+++.+.+...
T Consensus 74 gtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~ 149 (187)
T COG2229 74 GTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFDALPPEKIREALKLE 149 (187)
T ss_pred cCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCCCCCHHHHHHHHHhc
Confidence 6999999999999999999999999999988777 344555555321 239999999999999999999888887754
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
. ...+++..+|..+.+..+.++.+...
T Consensus 150 ~---~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 150 L---LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred c---CCCceeeeecccchhHHHHHHHHHhh
Confidence 2 35679999999999998888877654
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-16 Score=95.76 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=58.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc------------------CCCCCeEEEEEeCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR------------------EMRDAIILIFANKQ 62 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~p~ilv~nK~ 62 (113)
||+|+++|+.++..|+.++|++|+|||++++.+++....|+.++.+.. ...++|+++|+||.
T Consensus 60 DtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~ 139 (202)
T cd04102 60 DVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKL 139 (202)
T ss_pred ecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECc
Confidence 899999999999999999999999999999999999999999986521 12468999999999
Q ss_pred CCCC
Q psy17510 63 DLPD 66 (113)
Q Consensus 63 D~~~ 66 (113)
|+.+
T Consensus 140 Dl~~ 143 (202)
T cd04102 140 DQIP 143 (202)
T ss_pred cchh
Confidence 9865
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=94.31 Aligned_cols=103 Identities=24% Similarity=0.177 Sum_probs=69.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~ 76 (113)
||||+++|......++..+|++++|+|+++.. .......+..+... ...|+++++||+|+.+... .+++.+.
T Consensus 57 DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~-~~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~ 132 (164)
T cd04171 57 DVPGHEKFIKNMLAGAGGIDLVLLVVAADEGI-MPQTREHLEILELL---GIKRGLVVLTKADLVDEDWLELVEEEIREL 132 (164)
T ss_pred ECCChHHHHHHHHhhhhcCCEEEEEEECCCCc-cHhHHHHHHHHHHh---CCCcEEEEEECccccCHHHHHHHHHHHHHH
Confidence 89999999877777889999999999997621 12222222222111 2249999999999865321 1222222
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
+.... ...++++++||+++.|++++++.+.+
T Consensus 133 ~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 133 LAGTF--LADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHhcC--cCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 22110 13567999999999999999998864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-16 Score=92.22 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=74.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHH---h
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEK---L 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~---~ 77 (113)
||||++.+..++..++..+|++++|+|+++... ......+..+.. .++|+++++||+|+.+.. ...+... +
T Consensus 56 DtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~-~~~~~~~~~~~~----~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~ 129 (168)
T cd01887 56 DTPGHEAFTNMRARGASLTDIAILVVAADDGVM-PQTIEAIKLAKA----ANVPFIVALNKIDKPNAN-PERVKNELSEL 129 (168)
T ss_pred eCCCcHHHHHHHHHHHhhcCEEEEEEECCCCcc-HHHHHHHHHHHH----cCCCEEEEEEceeccccc-HHHHHHHHHHh
Confidence 899999999999999999999999999987432 122223333322 468999999999986432 2222221 1
Q ss_pred CCCc--cCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTR--IRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~--~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... .....++++++||+++.|+.++++++.+..
T Consensus 130 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 130 GLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred hccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 1111 112456899999999999999999998754
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=91.21 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=62.4
Q ss_pred CCcEEEEEEECCChhh--HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecccc
Q psy17510 18 GTQGLIFVVDCADRDR--IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 95 (113)
.+|++++|+|++++.+ .+....|+..+... ..+.|+++++||+|+.+.....+. +.+ .....+++++|||+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~-~~~----~~~~~~~~~~~Sa~ 151 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEI-EEE----EELEGEEVLKISTL 151 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHH-HHh----hhhccCceEEEEec
Confidence 3689999999987654 35555677776442 247899999999998653322221 111 12245679999999
Q ss_pred CCCCHHHHHHHHHhhc
Q psy17510 96 TADGLYEGLTWLTSNH 111 (113)
Q Consensus 96 ~~~~i~~~~~~l~~~~ 111 (113)
++.|++++++++.+.+
T Consensus 152 ~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 152 TEEGVDEVKNKACELL 167 (168)
T ss_pred ccCCHHHHHHHHHHHh
Confidence 9999999999998765
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=94.43 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=71.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||+++|...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+.+..... ++.+.
T Consensus 89 DtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~ 165 (203)
T cd01888 89 DCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENYEQIKKF 165 (203)
T ss_pred ECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHHHHHHHH
Confidence 89999999888888888999999999998632111222223333221 235799999999986532211 12221
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+.. .....++++++||+++.|++++++++.+.+.
T Consensus 166 ~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 166 VKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred Hhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 111 1123567999999999999999999988654
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=100.35 Aligned_cols=107 Identities=21% Similarity=0.118 Sum_probs=76.2
Q ss_pred CCCCccC-------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC-cCCCCCeEEEEEeCCCCCCCCCHH-
Q psy17510 1 DVGGQDK-------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMKPH- 71 (113)
Q Consensus 1 D~~G~~~-------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~- 71 (113)
||||.-. +...+..++++++++++|+|+++..+++....|..++... +...++|+++|+||+|+.+.....
T Consensus 212 D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~ 291 (335)
T PRK12299 212 DIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEERE 291 (335)
T ss_pred eCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHH
Confidence 7888632 3334445678899999999999877788888888877543 223478999999999986543221
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+..+.+. ....++++++||+++.|++++++++.+.+
T Consensus 292 ~~~~~~~----~~~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 292 KRAALEL----AALGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred HHHHHHH----HhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 1112111 12235789999999999999999998765
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-15 Score=88.84 Aligned_cols=107 Identities=23% Similarity=0.218 Sum_probs=78.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP----HEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~ 76 (113)
||||+..+...+..++..+|++++|+|.+.+.... ...++..+.. .++|+++++||+|+...... .++.+.
T Consensus 68 DtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~ 142 (189)
T cd00881 68 DTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKEL 142 (189)
T ss_pred eCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHH
Confidence 89999999999999999999999999998654332 2344444432 47899999999998753222 223333
Q ss_pred hCCCcc---------CCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 77 LGLTRI---------RDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 77 ~~~~~~---------~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+..... .....+++++||+++.|++++++++.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 322111 224678999999999999999999988764
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=88.40 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=64.1
Q ss_pred CCCCc-----cCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHHHHH
Q psy17510 1 DVGGQ-----DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQ 74 (113)
Q Consensus 1 D~~G~-----~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~ 74 (113)
||||+ +.++.+.. .++++|++++|+|++++.++.. ..|.... ..|+++++||+|+.+. ...++..
T Consensus 41 Dt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~~~~~~~~~~ 111 (142)
T TIGR02528 41 DTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF-------VKPVIGLVTKIDLAEADVDIERAK 111 (142)
T ss_pred cCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-------cCCeEEEEEeeccCCcccCHHHHH
Confidence 89997 23444444 5889999999999998876543 2343321 2499999999998652 2222222
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHH
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 108 (113)
+..... ...+++++||+++.|++++|+++.
T Consensus 112 ~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 112 ELLETA----GAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHc----CCCcEEEEecCCCCCHHHHHHHHh
Confidence 211110 112688999999999999999885
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-15 Score=96.70 Aligned_cols=107 Identities=22% Similarity=0.194 Sum_probs=74.9
Q ss_pred CCCCccC-------chhhHHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHcC-cCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDK-------IRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~-------~~~~~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||+.+ +...+..++.+++++++|+|+++. .+++....|.+++... +...++|+++|+||+|+.+...
T Consensus 211 D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~ 290 (329)
T TIGR02729 211 DIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE 290 (329)
T ss_pred eCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH
Confidence 8898742 223334456789999999999875 5666666676666432 2235789999999999876433
Q ss_pred HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..++.+.+.. ..+++++++||+++.|++++++++.+.+
T Consensus 291 ~~~~~~~l~~----~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 291 LAELLKELKK----ALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHH----HcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 3333333321 1235789999999999999999998765
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.2e-15 Score=102.22 Aligned_cols=102 Identities=24% Similarity=0.226 Sum_probs=76.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~ 77 (113)
||||+..|...+..++..||++++|+|+++..+......|.... . .++|+++++||+|+.+.... +++.+.+
T Consensus 76 DTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~l 150 (595)
T TIGR01393 76 DTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVI 150 (595)
T ss_pred ECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHh
Confidence 89999999999999999999999999999865555444444333 2 36899999999998653211 2333333
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+.. ...++++||++|.|++++++++.+.+.
T Consensus 151 g~~-----~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 151 GLD-----ASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred CCC-----cceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 321 124789999999999999999987653
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.7e-15 Score=84.84 Aligned_cols=105 Identities=30% Similarity=0.466 Sum_probs=79.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHH--HHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI--QEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~--~~~~~ 78 (113)
|++|+..+...+..++..+|++++|+|.+++.+......|...........++|+++++||+|+.+....... .....
T Consensus 51 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~ 130 (157)
T cd00882 51 DTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA 130 (157)
T ss_pred ecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH
Confidence 7899999988888899999999999999998887777766333322333468999999999998764433322 11111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
....++++++|+.++.|+.++++++.+
T Consensus 131 ----~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 131 ----KELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred ----hhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 124567999999999999999999863
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=89.31 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=65.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
||||+++|..++..++.++|++++|+|+++.. ......++..+.. .++|+++++||+|+.+... ..++.+.+
T Consensus 71 DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 145 (194)
T cd01891 71 DTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLF 145 (194)
T ss_pred ECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999998642 2333444554432 4689999999999865322 12222222
Q ss_pred C-CC-ccCCCCeEEEeccccCCCCH
Q psy17510 78 G-LT-RIRDRNWYVQPSCATTADGL 100 (113)
Q Consensus 78 ~-~~-~~~~~~~~~~~~sa~~~~~i 100 (113)
. .. .....+++++++||++|.|+
T Consensus 146 ~~~~~~~~~~~~~iv~~Sa~~g~~~ 170 (194)
T cd01891 146 IELGATEEQLDFPVLYASAKNGWAS 170 (194)
T ss_pred HHhCCccccCccCEEEeehhccccc
Confidence 1 00 11224678999999999775
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=89.65 Aligned_cols=88 Identities=22% Similarity=0.154 Sum_probs=63.2
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccc
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 94 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 94 (113)
.+..+|++++|+|.+++.+......|...+... ...++|+++|+||+|+.+..... .. ......+++++||
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa 187 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISA 187 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEc
Confidence 366899999999999877766655555544332 22468999999999986532221 11 1223457899999
Q ss_pred cCCCCHHHHHHHHHhhc
Q psy17510 95 TTADGLYEGLTWLTSNH 111 (113)
Q Consensus 95 ~~~~~i~~~~~~l~~~~ 111 (113)
+++.|+++++++|...+
T Consensus 188 ~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 188 KTGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 99999999999998753
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-15 Score=86.27 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=70.1
Q ss_pred CCCCccCchh------hHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRP------LWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~------~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++.+.. ++..++. .+|++++|+|.+++.. ...++..+.. .++|+++++||+|+.+......
T Consensus 49 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~---~~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~ 121 (158)
T cd01879 49 DLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLER---NLYLTLQLLE----LGLPVVVALNMIDEAEKRGIKI 121 (158)
T ss_pred ECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchh---HHHHHHHHHH----cCCCEEEEEehhhhcccccchh
Confidence 8999987764 3566665 9999999999987533 2344444433 3689999999999865432211
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+.+. ...+++++++||.++.|+.++++++.+.+.
T Consensus 122 ~~~~~~----~~~~~~~~~iSa~~~~~~~~l~~~l~~~~~ 157 (158)
T cd01879 122 DLDKLS----ELLGVPVVPTSARKGEGIDELKDAIAELAE 157 (158)
T ss_pred hHHHHH----HhhCCCeEEEEccCCCCHHHHHHHHHHHhc
Confidence 111111 112356899999999999999999987653
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-15 Score=99.52 Aligned_cols=105 Identities=16% Similarity=0.096 Sum_probs=71.4
Q ss_pred CCCCccCchhhH-----------HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC-CCC
Q psy17510 1 DVGGQDKIRPLW-----------RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP-DAM 68 (113)
Q Consensus 1 D~~G~~~~~~~~-----------~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~ 68 (113)
||||+.++.... ..++..+|++++|+|++++.+..+. .++..+.+ .++|+++++||+|+. +..
T Consensus 226 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~ 300 (429)
T TIGR03594 226 DTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEK 300 (429)
T ss_pred ECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHH
Confidence 899986654321 3468899999999999976554443 44444433 468999999999987 222
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...++.+...........++++++||++|.|++++++++.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 301 TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 222333333211111245689999999999999999988764
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-15 Score=100.24 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=70.9
Q ss_pred CCCCcc----------CchhhH-HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQD----------KIRPLW-RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~----------~~~~~~-~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||.. .|..+. ..++.++|++++|+|+++..+..+. .++..+.. .++|+++|+||+|+.+...
T Consensus 265 DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~----~~~piIiV~NK~Dl~~~~~ 339 (472)
T PRK03003 265 DTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQ-RVLSMVIE----AGRALVLAFNKWDLVDEDR 339 (472)
T ss_pred ECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCChhH
Confidence 899953 333332 2367899999999999987666654 34554433 4789999999999965322
Q ss_pred HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+.+............+++++||++|.|++++|+.+.+.+
T Consensus 340 ~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 340 RYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 222222221111111335789999999999999999988654
|
|
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-16 Score=91.57 Aligned_cols=104 Identities=16% Similarity=0.301 Sum_probs=83.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||+||++|......||.+|.+.++||..++..+|+....|.+.+... ...+|.++|-||+|+.++.. ..++.. +.
T Consensus 75 dtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~-la 151 (246)
T KOG4252|consen 75 DTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEG-LA 151 (246)
T ss_pred HhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHH-HH
Confidence 79999999999999999999999999999999999999999999654 47899999999999976422 222211 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+...+.++.+|++...++..+|..|+..+
T Consensus 152 ----k~l~~RlyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 152 ----KKLHKRLYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred ----HHhhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 11223467999999999999999887643
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=87.03 Aligned_cols=107 Identities=21% Similarity=0.160 Sum_probs=72.1
Q ss_pred CCCCccC----chhh---HHhhhcCCcEEEEEEECCCh------hhHHHHHHHHHHHHcCcC------CCCCeEEEEEeC
Q psy17510 1 DVGGQDK----IRPL---WRHYYTGTQGLIFVVDCADR------DRIDEARQELHRIINDRE------MRDAIILIFANK 61 (113)
Q Consensus 1 D~~G~~~----~~~~---~~~~~~~~~~vi~v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~p~ilv~nK 61 (113)
||||... .+.+ +..++.++|++++|+|.++. .+++....|...+..... ..++|+++++||
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 129 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNK 129 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEc
Confidence 8999632 2222 23357789999999999887 466666666666654321 146899999999
Q ss_pred CCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 62 QDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 62 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+|+.+.....+.. ..........+++++||+++.|++++++++...
T Consensus 130 ~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 130 IDLDDAEELEEEL---VRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhcCchhHHHHHH---HHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 9986543322221 001111234568999999999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.5e-15 Score=92.96 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=75.2
Q ss_pred cCchhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH-HHHHHhCCCccC
Q psy17510 6 DKIRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH-EIQEKLGLTRIR 83 (113)
Q Consensus 6 ~~~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~ 83 (113)
++++.+.+.+++++|++++|+|++++. +++....|+..+.. .++|+++++||+|+.+..... +..+.+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 788888999999999999999999876 88888899886643 579999999999996432211 222222 1
Q ss_pred CCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 84 DRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 84 ~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+++++++||+++.|++++|+.+...
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcCC
Confidence 245679999999999999999987653
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=85.91 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=66.9
Q ss_pred CCCCccCchhhH----HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHH
Q psy17510 1 DVGGQDKIRPLW----RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~----~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~ 76 (113)
||||.......+ ...++.+|++++|+|+++..+. ...|+..+ ..++|+++++||+|+.+ .+...+.+.
T Consensus 43 DtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~--~~~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~ 114 (158)
T PRK15467 43 DTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESR--LPAGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKL 114 (158)
T ss_pred cCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccc--cCHHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHH
Confidence 899973222212 2347899999999999876543 22344443 13579999999999854 333333332
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... ....|++++||++++|++++++.+.+.+
T Consensus 115 ~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 115 LLET---GFEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred HHHc---CCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 2111 1225899999999999999999998764
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-15 Score=90.42 Aligned_cols=106 Identities=25% Similarity=0.202 Sum_probs=75.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||+..|...+......+|++|+|+|+.+... ....+.+..+.. .++|+++++||+|+.. .... ++...
T Consensus 76 DtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~----~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~ 149 (188)
T PF00009_consen 76 DTPGHEDFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILRE----LGIPIIVVLNKMDLIE-KELEEIIEEIKEK 149 (188)
T ss_dssp EESSSHHHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHH----TT-SEEEEEETCTSSH-HHHHHHHHHHHHH
T ss_pred ccccccceeecccceecccccceeeeecccccc-cccccccccccc----cccceEEeeeeccchh-hhHHHHHHHHHHH
Confidence 899999999988889999999999999986532 223444555543 5789999999999862 1111 22212
Q ss_pred h-CCCccCC-CCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 77 L-GLTRIRD-RNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 77 ~-~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+ ....... ..++++.+||++|.|+.++++.+.+.++
T Consensus 150 l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 150 LLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred hccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 2 1111222 3689999999999999999999998765
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-14 Score=86.54 Aligned_cols=107 Identities=22% Similarity=0.197 Sum_probs=68.5
Q ss_pred CCCC-----------ccCchhhHHhhhc----CCcEEEEEEECCChhhH----------HHHHHHHHHHHcCcCCCCCeE
Q psy17510 1 DVGG-----------QDKIRPLWRHYYT----GTQGLIFVVDCADRDRI----------DEARQELHRIINDREMRDAII 55 (113)
Q Consensus 1 D~~G-----------~~~~~~~~~~~~~----~~~~vi~v~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~p~ 55 (113)
|||| +++++.++..|+. .++++++|+|.+..... .....++..+.. .++|+
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~p~ 133 (201)
T PRK04213 58 DLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE----LGIPP 133 (201)
T ss_pred eCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----cCCCe
Confidence 8999 6778877776664 35788999998643211 011222333321 47899
Q ss_pred EEEEeCCCCCCCC--CHHHHHHHhCCC-ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 56 LIFANKQDLPDAM--KPHEIQEKLGLT-RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 56 ilv~nK~D~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
++++||+|+.+.. ...++.+.++.. .......+++++||++| |+++++++|.+.+.
T Consensus 134 iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 134 IVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred EEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 9999999986533 233444444431 11111236899999999 99999999987653
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=88.40 Aligned_cols=109 Identities=26% Similarity=0.361 Sum_probs=77.6
Q ss_pred CCCCccCchhhHHhhhcCC-cEEEEEEECCCh-hhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCCCCCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGT-QGLIFVVDCADR-DRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAMKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~-~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~ 76 (113)
||||+++++.++..+++.+ +++|||+|.++. .++.....++..+..... ..++|+++++||+|+..+.....+.+.
T Consensus 54 D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~ 133 (203)
T cd04105 54 DVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQ 133 (203)
T ss_pred ECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHH
Confidence 8999999999999999999 999999999986 677777777666543321 257999999999998765332221110
Q ss_pred h-----------CCC----------------------cc--CCCCeEEEeccccCCC-CHHHHHHHHHh
Q psy17510 77 L-----------GLT----------------------RI--RDRNWYVQPSCATTAD-GLYEGLTWLTS 109 (113)
Q Consensus 77 ~-----------~~~----------------------~~--~~~~~~~~~~sa~~~~-~i~~~~~~l~~ 109 (113)
+ ... .+ ....+.+.++|++.+. |++.+.+|+..
T Consensus 134 le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 134 LEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred HHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0 000 00 1134678999998776 69999998864
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=93.77 Aligned_cols=66 Identities=20% Similarity=0.348 Sum_probs=58.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-----------CCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-----------MRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~D~~~ 66 (113)
||+|+++|+.++..|+.+++++|+|||+++..+++.+..|+..+..... ..++|+++|+||+|+.+
T Consensus 89 DTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 89 DVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 8999999999999999999999999999999999999999999875421 12589999999999865
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-14 Score=97.87 Aligned_cols=102 Identities=22% Similarity=0.218 Sum_probs=74.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~ 77 (113)
||||+..|...+..++..+|++|+|+|+++.........|.... . .++|+++++||+|+.+.... .++.+.+
T Consensus 80 DTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~l 154 (600)
T PRK05433 80 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAADPERVKQEIEDVI 154 (600)
T ss_pred ECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCcccHHHHHHHHHHHh
Confidence 89999999999999999999999999998754433333333222 2 46899999999998653221 2333333
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+.. ...++.+||++|.|+.++++++.+.+.
T Consensus 155 g~~-----~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 155 GID-----ASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CCC-----cceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 321 234889999999999999999987653
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-14 Score=82.78 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=66.2
Q ss_pred CCCCccCchh--------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRP--------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~--------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||+..+.. .+..++..+|++++|+|..+..+... ..+...+ +. .+.|+++++||+|+.+....
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~-~~---~~~piiiv~nK~D~~~~~~~-- 123 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPAD-EEIAKYL-RK---SKKPVILVVNKVDNIKEEDE-- 123 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccH-HHHHHHH-Hh---cCCCEEEEEECcccCChHHH--
Confidence 8999988654 34557889999999999976433222 1222222 21 35899999999998653222
Q ss_pred HHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..... ..+. +++++|++++.|++++++++.+.+
T Consensus 124 -~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 124 -AAEFY-----SLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred -HHHHH-----hcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 11111 0112 478999999999999999998753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-14 Score=95.73 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCCCccC--------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDK--------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~--------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++. +...+..+++.||++|+|+|+++..+..+ ..+...+.. .++|+++|+||+|+..... +
T Consensus 92 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~~--~ 164 (472)
T PRK03003 92 DTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGEA--D 164 (472)
T ss_pred eCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccch--h
Confidence 8999763 44456678999999999999997654432 233333322 4789999999999864221 1
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..... .+ ..+++||++|.|+++++++++..+
T Consensus 165 ~~~~~~~g----~~-~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 165 AAALWSLG----LG-EPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred hHHHHhcC----CC-CeEEEEcCCCCCcHHHHHHHHhhc
Confidence 11211111 11 236899999999999999998765
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-14 Score=85.82 Aligned_cols=107 Identities=19% Similarity=0.047 Sum_probs=68.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~ 76 (113)
||||+..+..........+|++++|+|+++.........+. .. .. .++|+++++||+|+..... .+++.+.
T Consensus 74 DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 148 (192)
T cd01889 74 DCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI---LCKKLIVVLNKIDLIPEEERERKIEKMKKK 148 (192)
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH---cCCCEEEEEECcccCCHHHHHHHHHHHHHH
Confidence 89999665444334556789999999998743333222221 11 11 3579999999999864322 1222222
Q ss_pred hCCCc--cCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 77 LGLTR--IRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 77 ~~~~~--~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+.... .....++++++||+++.|++++++++..++.
T Consensus 149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 21110 1124568999999999999999999998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-14 Score=98.12 Aligned_cols=103 Identities=20% Similarity=0.276 Sum_probs=72.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|||||+.|..++..++..+|++++|+|+++.. .....+.+.... ..++|+++++||+|+++. +..++.+.+...
T Consensus 141 DTPGhe~F~~~r~rga~~aDiaILVVda~dgv-~~qT~e~i~~~~----~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~ 214 (587)
T TIGR00487 141 DTPGHEAFTSMRARGAKVTDIVVLVVAADDGV-MPQTIEAISHAK----AANVPIIVAINKIDKPEA-NPDRVKQELSEY 214 (587)
T ss_pred ECCCCcchhhHHHhhhccCCEEEEEEECCCCC-CHhHHHHHHHHH----HcCCCEEEEEECcccccC-CHHHHHHHHHHh
Confidence 89999999999999999999999999988632 122223333332 247899999999998652 333333322111
Q ss_pred cc----CCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 81 RI----RDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 81 ~~----~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
.+ -...++++++||++|.|++++++++..
T Consensus 215 g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 215 GLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred hhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 00 012357999999999999999998864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=80.72 Aligned_cols=106 Identities=25% Similarity=0.202 Sum_probs=74.2
Q ss_pred CCCCccCchh-------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHH
Q psy17510 1 DVGGQDKIRP-------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI 73 (113)
Q Consensus 1 D~~G~~~~~~-------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 73 (113)
||||+..+.. .+..++..+|++++|+|.++........ +...... .+.|+++++||+|+.........
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~ 125 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEEL 125 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHH
Confidence 7899876643 4445889999999999999865544433 3334322 57899999999998764444333
Q ss_pred HHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 74 QEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+............+++++||+++.|+.++++++.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 126 LELRLLILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred HHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 22112122234567899999999999999999998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-14 Score=98.90 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=74.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++.|..++..++..+|++++|+|+++.... ...+.+..+. ..++|+++++||+|+.+. +..++.+.+...
T Consensus 301 DTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~-QT~E~I~~~k----~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~ 374 (742)
T CHL00189 301 DTPGHEAFSSMRSRGANVTDIAILIIAADDGVKP-QTIEAINYIQ----AANVPIIVAINKIDKANA-NTERIKQQLAKY 374 (742)
T ss_pred ECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCCh-hhHHHHHHHH----hcCceEEEEEECCCcccc-CHHHHHHHHHHh
Confidence 8999999999999999999999999999864221 2222333332 257899999999998652 233333332211
Q ss_pred -cc---CCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 -RI---RDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 -~~---~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.. .+..++++++||++|.|+.++++++...
T Consensus 375 ~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 375 NLIPEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred ccchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 11 1234789999999999999999998764
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.4e-14 Score=91.96 Aligned_cols=99 Identities=23% Similarity=0.144 Sum_probs=67.5
Q ss_pred CCCCc---------cCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQ---------DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~---------~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||+|. +.|++.+. ++..||++++|+|++++.+.+....|...+... ...++|+++|+||+|+.+. .
T Consensus 243 DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~~~piIlV~NK~Dl~~~---~ 317 (351)
T TIGR03156 243 DTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GAEDIPQLLVYNKIDLLDE---P 317 (351)
T ss_pred ecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccCCCCEEEEEEeecCCCh---H
Confidence 89997 23333333 578999999999999887666554444333221 1246899999999998652 2
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
++..... ...+++.+||+++.|++++++++...
T Consensus 318 ~v~~~~~------~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 318 RIERLEE------GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred hHHHHHh------CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 2211111 11247899999999999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=98.68 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=72.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL- 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~- 79 (113)
|||||+.|..++..++..+|++|+|+|+++... ..+...+.... ..++|+++++||+|+.+. +...+...+..
T Consensus 343 DTPGhe~F~~m~~rga~~aDiaILVVdAddGv~-~qT~e~i~~a~----~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~ 416 (787)
T PRK05306 343 DTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM-PQTIEAINHAK----AAGVPIIVAINKIDKPGA-NPDRVKQELSEY 416 (787)
T ss_pred ECCCCccchhHHHhhhhhCCEEEEEEECCCCCC-HhHHHHHHHHH----hcCCcEEEEEECcccccc-CHHHHHHHHHHh
Confidence 899999999999999999999999999986321 22222233332 257899999999999652 33333222211
Q ss_pred Ccc---CCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 80 TRI---RDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 80 ~~~---~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
... ....++++++||++|.|++++++++..
T Consensus 417 ~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 417 GLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred cccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 111 123478999999999999999998864
|
|
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-14 Score=82.90 Aligned_cols=108 Identities=11% Similarity=0.118 Sum_probs=81.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
|.+|++++..+..-.++++-+++|+||.+.+.+++....|+++.+..+. ..+| +++|+|.|.--... .++-.....
T Consensus 75 dlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qa 152 (205)
T KOG1673|consen 75 DLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQA 152 (205)
T ss_pred ecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999977532 3355 78899999532222 222222222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+.+..+.+++.||+....+++++|+-+...
T Consensus 153 r~YAk~mnAsL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 153 RKYAKVMNASLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred HHHHHHhCCcEEEeeccccccHHHHHHHHHHH
Confidence 22333355578999999999999999976543
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=79.93 Aligned_cols=103 Identities=22% Similarity=0.296 Sum_probs=75.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCCh-hhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR-DRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 78 (113)
|+||+.+++.++..+...++++++++|.... .++.... .|...+..... .+.|+++++||+|+..........+.+.
T Consensus 56 D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 134 (161)
T TIGR00231 56 DTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFA 134 (161)
T ss_pred ECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHh
Confidence 8999999999999999999999999999876 5555554 55555544322 2789999999999865332223333222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHH
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLT 108 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 108 (113)
.. ...+++++||+++.|+.++++++.
T Consensus 135 ~~----~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KL----NGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hc----cCCceEEeecCCCCCHHHHHHHhh
Confidence 21 234589999999999999999874
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.1e-14 Score=80.89 Aligned_cols=108 Identities=19% Similarity=0.297 Sum_probs=82.4
Q ss_pred CCCCccCc-hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKI-RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||+|...+ ..+-++|++-+|++++||++.++.+|+....+-+.+-+...-+.+|+++.+||.|+.++.. +......
T Consensus 66 DTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~---vd~d~A~ 142 (198)
T KOG3883|consen 66 DTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE---VDMDVAQ 142 (198)
T ss_pred ecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh---cCHHHHH
Confidence 79998887 5678899999999999999999999888766555565555556789999999999865322 2222222
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.......+..++++|.+...+-+.|..+...+
T Consensus 143 ~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 143 IWAKREKVKLWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred HHHhhhheeEEEEEeccchhhhhHHHHHHHhc
Confidence 33345567789999999999999998887643
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=87.38 Aligned_cols=103 Identities=18% Similarity=0.138 Sum_probs=67.5
Q ss_pred CCCCccCch-h-------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIR-P-------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~-~-------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||..... . ....++.++|++++|+|+++..+.. ..++..+.. .+.|+++++||+|+.+......
T Consensus 54 DTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~~~ 127 (270)
T TIGR00436 54 DTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKDKLLP 127 (270)
T ss_pred ECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHHHHHH
Confidence 899975431 1 1345788999999999999765543 333444422 4689999999999864221111
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
....+... ....+++++||++|.|++++++++.+.+.
T Consensus 128 ~~~~~~~~---~~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 128 LIDKYAIL---EDFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred HHHHHHhh---cCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 11111110 11126899999999999999999987653
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=84.44 Aligned_cols=110 Identities=26% Similarity=0.309 Sum_probs=79.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH-HHHHHh-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH-EIQEKL- 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~- 77 (113)
||+|+++++.++..|+.+++++++++|.++. ...+....|...+..... .+.|+++++||+|+....... .+...+
T Consensus 60 Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~ 138 (219)
T COG1100 60 DTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLN 138 (219)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhh
Confidence 8999999999999999999999999999984 455556788888766422 468999999999997653211 111110
Q ss_pred ---------CCCcc-CCCCeEEEecccc--CCCCHHHHHHHHHhhc
Q psy17510 78 ---------GLTRI-RDRNWYVQPSCAT--TADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ---------~~~~~-~~~~~~~~~~sa~--~~~~i~~~~~~l~~~~ 111 (113)
..... ......++++|++ ++.++.++|..+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 139 REVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred cCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence 00000 0122338899999 9999999999887654
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.3e-14 Score=94.62 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=67.9
Q ss_pred CCCCccCchhh--------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPL--------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~--------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++.+... ...++..+|++++|+|.+++.+.+....|. . ..++|+++|+||+|+.+.....
T Consensus 269 DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~-~------~~~~piiiV~NK~DL~~~~~~~- 340 (449)
T PRK05291 269 DTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILE-E------LKDKPVIVVLNKADLTGEIDLE- 340 (449)
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHH-h------cCCCCcEEEEEhhhccccchhh-
Confidence 89998765543 223788999999999999876665433332 2 2568999999999986532221
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++||+++.|++++++++.+.+
T Consensus 341 ----------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 341 ----------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred ----------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 12234688999999999999999998754
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=93.41 Aligned_cols=106 Identities=18% Similarity=0.138 Sum_probs=72.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP----HEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~ 76 (113)
||||+++|.+.+......+|++++|+|+++........+.+..+.. ....|+++++||+|+.+.... .++.+.
T Consensus 86 DtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~---~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~ 162 (406)
T TIGR03680 86 DAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI---IGIKNIVIVQNKIDLVSKEKALENYEEIKEF 162 (406)
T ss_pred ECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH---cCCCeEEEEEEccccCCHHHHHHHHHHHHhh
Confidence 8999999998888888899999999999864212222333333321 123579999999998653221 112111
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+. .. ....++++++||+++.|+++++++|...+
T Consensus 163 l~-~~-~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 163 VK-GT-VAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred hh-hc-ccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 11 11 12357899999999999999999998754
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-13 Score=79.34 Aligned_cols=94 Identities=19% Similarity=0.081 Sum_probs=67.5
Q ss_pred CCCCccCchhh--------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPL--------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~--------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||...+... ...++.++|++++|+|++++.+......+.. ..++|+++++||+|+.+....
T Consensus 55 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-- 125 (157)
T cd04164 55 DTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-- 125 (157)
T ss_pred ECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc--
Confidence 78997665321 2346779999999999997655554332222 257899999999998653222
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.......+++++||+++.|+.++++++...+
T Consensus 126 --------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 --------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred --------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 1122345799999999999999999998764
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-14 Score=85.77 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=88.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|+|++..+...|+-.+-+.|++||++..-++....+|.+.+.+. ..++|+++.+||.|..... .+.....
T Consensus 65 dtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv--~~NiPiv~cGNKvDi~~r~-----~k~k~v~ 137 (216)
T KOG0096|consen 65 DTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRV--RENIPIVLCGNKVDIKARK-----VKAKPVS 137 (216)
T ss_pred ecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHH--hcCCCeeeeccceeccccc-----cccccce
Confidence 79999999999999999999999999999888999999999999765 4679999999999975522 2333445
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+...+.+.++++||+++.+.+.-|-|+.+.+
T Consensus 138 ~~rkknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 138 FHRKKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred eeecccceeEEeecccccccccchHHHhhhh
Confidence 5567888999999999999999999998765
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=89.29 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=67.5
Q ss_pred CCCCcc-CchhhH-------HhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQD-KIRPLW-------RHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~-~~~~~~-------~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||||+. .+..+. ..++.+||++++|+|.+++ +... ..|+..+.. .+.|.++++||+|+.+. ...
T Consensus 106 DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~-~~~ 178 (339)
T PRK15494 106 DTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--FDDITHNILDKLRS----LNIVPIFLLNKIDIESK-YLN 178 (339)
T ss_pred ECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc-cHH
Confidence 899984 333222 1347799999999998653 3333 344554432 34677899999998653 233
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+..+..... ....+++++||++|.|++++++++...+.
T Consensus 179 ~~~~~l~~~---~~~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 179 DIKAFLTEN---HPDSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred HHHHHHHhc---CCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 333332211 12357899999999999999999988654
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-13 Score=90.80 Aligned_cols=101 Identities=22% Similarity=0.276 Sum_probs=73.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 77 (113)
|||||+-|.+|+..-.+-+|.+|+|+|+++. ++.+. ++... ..+.|+++++||+|+++.. ...+...+
T Consensus 61 DTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEA----I~hak----~a~vP~iVAiNKiDk~~~n-p~~v~~el 131 (509)
T COG0532 61 DTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEA----INHAK----AAGVPIVVAINKIDKPEAN-PDKVKQEL 131 (509)
T ss_pred cCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHH----HHHHH----HCCCCEEEEEecccCCCCC-HHHHHHHH
Confidence 8999999999999999999999999999873 33332 23332 2689999999999998543 33232222
Q ss_pred CCCcc----CCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 78 GLTRI----RDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 78 ~~~~~----~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
....+ -...+.++.+||++|+|+.+++..+...
T Consensus 132 ~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 132 QEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred HHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence 21112 1245789999999999999999977643
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-13 Score=84.01 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=69.3
Q ss_pred CCCCccCchhhHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~ 74 (113)
||||+++|.+.....+. .+|++++|+|+..... ....+++..+.. .++|+++++||+|+.+..... ++.
T Consensus 90 DtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~~~~~~~~l~ 164 (224)
T cd04165 90 DLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANILQETLKDLK 164 (224)
T ss_pred ECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHHHHHHHHHHH
Confidence 89999999765555554 6899999999876432 333445555533 468999999999985532222 222
Q ss_pred HHhCCCc---------------------cCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 75 EKLGLTR---------------------IRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 75 ~~~~~~~---------------------~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
+.+.... .....+|++.+||.+|.|++++.+.|..
T Consensus 165 ~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 165 RILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 2222110 0123458999999999999999887754
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=9e-13 Score=78.67 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=62.4
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhCCCccCCCCeEEEe
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQP 91 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 91 (113)
.++..+|++++|+|++++.+... ..++..... .+.|+++++||+|+.+. ....++.+............++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQD-LRIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhH-HHHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 35678999999999988755433 234444432 46899999999998664 223333333322111113457999
Q ss_pred ccccCCCCHHHHHHHHHhh
Q psy17510 92 SCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 92 ~sa~~~~~i~~~~~~l~~~ 110 (113)
+||+++.|+.++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.8e-13 Score=89.55 Aligned_cols=103 Identities=26% Similarity=0.265 Sum_probs=69.5
Q ss_pred CCCCccC----c---hhhHHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHcC-cCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDK----I---RPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~----~---~~~~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||.-. . ...+...+.+++++++|+|+++. .++++...|..++... +...++|+++|+||+|+.+...
T Consensus 212 D~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e 291 (424)
T PRK12297 212 DIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE 291 (424)
T ss_pred ECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH
Confidence 7888632 2 22233346679999999999754 4566666666666442 2235789999999999853211
Q ss_pred -HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 -PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+++.+.+. ++++++||++++|++++++++.+.+
T Consensus 292 ~l~~l~~~l~--------~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 292 NLEEFKEKLG--------PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred HHHHHHHHhC--------CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122222222 4688999999999999999988654
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=96.80 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=71.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCHHH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKPHE----IQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~----~~~ 75 (113)
||||+++|...+..++.++|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+...... +.+
T Consensus 56 DtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~-~~qT~ehl~il~~----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~ 130 (581)
T TIGR00475 56 DVPGHEKFISNAIAGGGGIDAALLVVDADEGV-MTQTGEHLAVLDL----LGIPHTIVVITKADRVNEEEIKRTEMFMKQ 130 (581)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999988888999999999999998732 1222333333321 3577 999999999865322111 111
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+....+ ...++++++||++|.|++++++++...+
T Consensus 131 ~l~~~~~-~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 131 ILNSYIF-LKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred HHHHhCC-CCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 1111101 1257899999999999999998886543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-13 Score=90.09 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=67.4
Q ss_pred CCCCccCchhhH--------HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPLW--------RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~--------~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++.+...+ ..+++.+|++++|+|.+++.+.+.. |+..+.. .++|+++|+||+|+.+. +..+
T Consensus 257 DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~ 329 (442)
T TIGR00450 257 DTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEF 329 (442)
T ss_pred eCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhh
Confidence 899997665432 3578899999999999987666554 6665532 46899999999998653 2222
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.+. .+++++.+||++ .|++++++.+.+.+
T Consensus 330 ~~~~--------~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 330 FVSS--------KVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred hhhh--------cCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 2221 234578999997 68888888777654
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-13 Score=90.78 Aligned_cols=104 Identities=15% Similarity=0.088 Sum_probs=69.7
Q ss_pred CCCCccCchhh-----------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKIRPL-----------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~~~~-----------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||..+.... ...++..+|++++|+|++++.+..+ ..+...+.+ .++|+++++||+|+.+...
T Consensus 227 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~-~~i~~~~~~----~~~~~ivv~NK~Dl~~~~~ 301 (435)
T PRK00093 227 DTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQD-LRIAGLALE----AGRALVIVVNKWDLVDEKT 301 (435)
T ss_pred ECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH----cCCcEEEEEECccCCCHHH
Confidence 89996543322 1246789999999999997655443 234444433 4689999999999864322
Q ss_pred HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
..++.+............+++++||+++.|++++++.+.+
T Consensus 302 ~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~ 341 (435)
T PRK00093 302 MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDE 341 (435)
T ss_pred HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 3333333321111124568999999999999999998765
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.1e-13 Score=92.34 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=70.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------------ 68 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------ 68 (113)
||||++.|..++..++..+|++++|+|+++..... ....+..+.. .++|+++++||+|+.+..
T Consensus 75 DTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~q-t~e~i~~l~~----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~s 149 (590)
T TIGR00491 75 DTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQ-TQEALNILRM----YKTPFVVAANKIDRIPGWRSHEGRPFMESF 149 (590)
T ss_pred ECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHh-HHHHHHHHHH----cCCCEEEEEECCCccchhhhccCchHHHHH
Confidence 89999999999999999999999999998632111 1222222322 468999999999986421
Q ss_pred --CHHHHHH-----------HhCCCcc----------CCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 69 --KPHEIQE-----------KLGLTRI----------RDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 69 --~~~~~~~-----------~~~~~~~----------~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
....+.. .+....+ -...++++++||++|+|++++..++..
T Consensus 150 ak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 150 SKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0111100 1111101 123578999999999999999998753
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.2e-13 Score=94.97 Aligned_cols=93 Identities=11% Similarity=0.010 Sum_probs=63.7
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecc
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
.++..+|++++|+|+++..+..+. .++..+.. .++|+++++||+|+.+....+.+.+............+++.+|
T Consensus 528 ~~i~~advvilViDat~~~s~~~~-~i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iS 602 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDL-KVMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLS 602 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEE
Confidence 357899999999999987666654 34444433 4689999999999975433333332222111111334678999
Q ss_pred ccCCCCHHHHHHHHHhhc
Q psy17510 94 ATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~~~ 111 (113)
|++|.|++++++.+.+..
T Consensus 603 Aktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 603 AKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887653
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-13 Score=90.39 Aligned_cols=105 Identities=18% Similarity=0.126 Sum_probs=75.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|||||.-|.+|+..--+.+|.+++|+.+.+. -...+.+-+... ...+.|+++++||+|.+++....-..+.....
T Consensus 207 DTPGHaAF~aMRaRGA~vtDIvVLVVAadDG-VmpQT~EaIkhA----k~A~VpiVvAinKiDkp~a~pekv~~eL~~~g 281 (683)
T KOG1145|consen 207 DTPGHAAFSAMRARGANVTDIVVLVVAADDG-VMPQTLEAIKHA----KSANVPIVVAINKIDKPGANPEKVKRELLSQG 281 (683)
T ss_pred cCCcHHHHHHHHhccCccccEEEEEEEccCC-ccHhHHHHHHHH----HhcCCCEEEEEeccCCCCCCHHHHHHHHHHcC
Confidence 8999999999999999999999999988763 122222223333 33689999999999987644333333322211
Q ss_pred cc---CCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RI---RDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~---~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.. -+.+++++++||++|.|++.+-+.+..+
T Consensus 282 i~~E~~GGdVQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 282 IVVEDLGGDVQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred ccHHHcCCceeEEEeecccCCChHHHHHHHHHH
Confidence 11 2467899999999999999988877644
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=88.02 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=68.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP----HEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~ 76 (113)
||||+++|..........+|++++|+|++++.........+..+... ...|+++++||+|+.+.... +++.+.
T Consensus 91 DtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~ 167 (411)
T PRK04000 91 DAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII---GIKNIVIVQNKIDLVSKERALENYEQIKEF 167 (411)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence 89999988776665666789999999998642111222222222211 23478999999998653221 112221
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.. . ....++++++||+++.|+++++++|...+
T Consensus 168 l~~-~-~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 168 VKG-T-VAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred hcc-c-cCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 111 1 12356899999999999999999998754
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-12 Score=86.33 Aligned_cols=99 Identities=23% Similarity=0.127 Sum_probs=66.3
Q ss_pred CCCCccCc--hhhHH------hhhcCCcEEEEEEECCChhhHHHHH---HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKI--RPLWR------HYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~--~~~~~------~~~~~~~~vi~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||+|..+. ..+++ ..+..||++++|+|++++.+.+... .++..+. ..++|+++|+||+|+.+...
T Consensus 251 DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~----~~~~pvIiV~NKiDL~~~~~ 326 (426)
T PRK11058 251 DTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEID----AHEIPTLLVMNKIDMLDDFE 326 (426)
T ss_pred ecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhc----cCCCCEEEEEEcccCCCchh
Confidence 89997432 23333 2468899999999999876666543 3444442 24689999999999864211
Q ss_pred HHHHHHHhCCCccCCCCeE-EEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRNWY-VQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+.. .. .+.+ ++.+||++|.|++++++++...+
T Consensus 327 -~~~~~-~~------~~~~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 327 -PRIDR-DE------ENKPIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred -HHHHH-Hh------cCCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 11111 11 1112 47899999999999999998765
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=91.71 Aligned_cols=107 Identities=12% Similarity=0.147 Sum_probs=78.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
||||+..|...+..+++.+|++++|+|+++. .......|+..+.. .++|+++++||+|+.+... ..++.+.+
T Consensus 70 DTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~ 144 (594)
T TIGR01394 70 DTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLF 144 (594)
T ss_pred ECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHH
Confidence 8999999999999999999999999999863 34555667777654 4689999999999865321 12233333
Q ss_pred CCCcc--CCCCeEEEeccccCCC----------CHHHHHHHHHhhcC
Q psy17510 78 GLTRI--RDRNWYVQPSCATTAD----------GLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~--~~~~~~~~~~sa~~~~----------~i~~~~~~l~~~~~ 112 (113)
..... ....++++.+||+++. |+..+++.++..+.
T Consensus 145 ~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 145 AELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred HhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 21111 1235689999999995 79999999887653
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.2e-13 Score=82.47 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh------hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CC---H
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD------RIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MK---P 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~---~ 70 (113)
||||+..|...+...+..+|++++|+|+++.. ........+..... ...+|+++++||+|+.+. .+ .
T Consensus 83 DtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 83 DAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART---LGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred ECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH---cCCCeEEEEEEccccccccccHHHH
Confidence 89999888777777788999999999998741 11112222222211 133689999999998742 11 1
Q ss_pred HHHHHH----hCCCccCCCCeEEEeccccCCCCHH
Q psy17510 71 HEIQEK----LGLTRIRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 71 ~~~~~~----~~~~~~~~~~~~~~~~sa~~~~~i~ 101 (113)
.++.+. +.........++++.+||++|.|+.
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 222222 2211223346889999999999976
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-13 Score=78.61 Aligned_cols=111 Identities=29% Similarity=0.566 Sum_probs=91.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|.+||.--+..|..|+..+|++++.+|+-+.+++.+....+..+.........|+++.+||+|.+.+.+.++..-.++..
T Consensus 70 DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~ 149 (193)
T KOG0077|consen 70 DLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLS 149 (193)
T ss_pred ccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHH
Confidence 77888888899999999999999999999999999998888888776666889999999999999988877776655422
Q ss_pred c------------cCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 R------------IRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~------------~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...+.+.++-||...+.|..+.|.|+...+
T Consensus 150 ~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 150 NFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred HHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 1 112345688999999999889999987654
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.9e-13 Score=90.07 Aligned_cols=106 Identities=25% Similarity=0.266 Sum_probs=67.8
Q ss_pred CCCCccC----c---hhhHHhhhcCCcEEEEEEECCCh----hhHHHHHHHHHHHHcCc----------CCCCCeEEEEE
Q psy17510 1 DVGGQDK----I---RPLWRHYYTGTQGLIFVVDCADR----DRIDEARQELHRIINDR----------EMRDAIILIFA 59 (113)
Q Consensus 1 D~~G~~~----~---~~~~~~~~~~~~~vi~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~p~ilv~ 59 (113)
||||.-. . ......++.+|+++++|+|+++. +.+++...+..++.... ...++|+++|+
T Consensus 212 DtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVl 291 (500)
T PRK12296 212 DVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVL 291 (500)
T ss_pred ECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEE
Confidence 7888532 1 11223357889999999999752 24444444443332211 23568999999
Q ss_pred eCCCCCCCCCHHHH-HHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 60 NKQDLPDAMKPHEI-QEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 60 nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
||+|+++.....+. ...+ ...+++++++||+++.|+++++.+|.+.+
T Consensus 292 NKiDL~da~el~e~l~~~l-----~~~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 292 NKIDVPDARELAEFVRPEL-----EARGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred ECccchhhHHHHHHHHHHH-----HHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 99998653222211 1111 12356899999999999999999988754
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.4e-13 Score=92.78 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=66.8
Q ss_pred CCCCccCchhh------HHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPL------WRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~------~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||+.++... .+.|+ ..+|++++|+|.++.+ ....+..++.+ .++|+++++||+|+.+......
T Consensus 47 DtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~ 119 (591)
T TIGR00437 47 DLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIRI 119 (591)
T ss_pred ECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCChh
Confidence 89999887653 34444 3789999999998632 23344444433 4689999999999854322111
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+.+.. ..+++++++||++++|++++++++.+.
T Consensus 120 d~~~L~~----~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 120 DEEKLEE----RLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred hHHHHHH----HcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 1111111 123578999999999999999998764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.41 E-value=6e-13 Score=90.27 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=62.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC------HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAMK------PHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~~~ 72 (113)
||||+++|......++..+|++++|+|+++..+.. ....++..... ....|+++++||+|+.+... ..+
T Consensus 91 DtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~---~~~~~iIVviNK~Dl~~~~~~~~~~~~~e 167 (426)
T TIGR00483 91 DCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART---LGINQLIVAINKMDSVNYDEEEFEAIKKE 167 (426)
T ss_pred ECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH---cCCCeEEEEEEChhccCccHHHHHHHHHH
Confidence 89999998776666788999999999998763221 11122222211 12358999999999864211 112
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHH
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
+.+......+....++++++||+++.|+.+
T Consensus 168 i~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 168 VSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHcCCCcccceEEEeeccccccccc
Confidence 222222112222457899999999999875
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.8e-13 Score=79.81 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=82.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC---cCCCCCeEEEEEeCCCCCCCC-C--HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND---REMRDAIILIFANKQDLPDAM-K--PHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D~~~~~-~--~~~~~ 74 (113)
|++||++|..|.+.|++.+++..+|||.+++.+++....|...+..- +.....|+++..||+|..... + ...+.
T Consensus 81 dIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d 160 (229)
T KOG4423|consen 81 DIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFD 160 (229)
T ss_pred cchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHH
Confidence 78999999999999999999999999999999999999998887432 333467899999999975421 1 12333
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....+. ....+++|++.+.++.++-..++..+
T Consensus 161 ~f~keng----f~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 161 NFKKENG----FEGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred HHHhccC----ccceeeeccccccChhHHHHHHHHHH
Confidence 3222221 22478999999999999988887654
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.9e-12 Score=78.93 Aligned_cols=107 Identities=21% Similarity=0.185 Sum_probs=76.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
||||+..|...+..++..+|++++|+|+++... .....+++.+.. .++|+++++||+|+..... ..++.+.+
T Consensus 70 DTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~-~~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~ 144 (237)
T cd04168 70 DTPGHMDFIAEVERSLSVLDGAILVISAVEGVQ-AQTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKL 144 (237)
T ss_pred eCCCccchHHHHHHHHHHhCeEEEEEeCCCCCC-HHHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999987533 234455555533 4789999999999865210 11222222
Q ss_pred CCC------------------------------------------c--------------cCCCCeEEEeccccCCCCHH
Q psy17510 78 GLT------------------------------------------R--------------IRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 78 ~~~------------------------------------------~--------------~~~~~~~~~~~sa~~~~~i~ 101 (113)
+.. . ..+.-+|++-.||.++.|+.
T Consensus 145 ~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~ 224 (237)
T cd04168 145 SSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIE 224 (237)
T ss_pred CCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHH
Confidence 110 0 01234689999999999999
Q ss_pred HHHHHHHhhcC
Q psy17510 102 EGLTWLTSNHK 112 (113)
Q Consensus 102 ~~~~~l~~~~~ 112 (113)
.+++.+++.+.
T Consensus 225 ~ll~~~~~~~p 235 (237)
T cd04168 225 ELLEGITKLFP 235 (237)
T ss_pred HHHHHHHHhcC
Confidence 99999998764
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=85.39 Aligned_cols=109 Identities=26% Similarity=0.410 Sum_probs=82.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
|++|+...++.|.+|+.+++++|||+|.++ ...+.++..+++.+...+...++|++++.||.|+...
T Consensus 190 DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~ 269 (342)
T smart00275 190 DVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIK 269 (342)
T ss_pred ecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhC
Confidence 899999999999999999999999999996 3468888889999988877789999999999996321
Q ss_pred --------------CCHHH----HHHHhCCCcc--CCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 68 --------------MKPHE----IQEKLGLTRI--RDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 68 --------------~~~~~----~~~~~~~~~~--~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
.+... +.+.+....- .++.+..+.++|.+..++..+|+.+..
T Consensus 270 ~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~ 331 (342)
T smart00275 270 KVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKD 331 (342)
T ss_pred CCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHH
Confidence 01111 2222221111 234577889999999999988876654
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-12 Score=85.00 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=71.1
Q ss_pred CCCCccCc-------hhhHHhhhcCCcEEEEEEECC---ChhhHHHHHHHHHHHHcC-cCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKI-------RPLWRHYYTGTQGLIFVVDCA---DRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~-------~~~~~~~~~~~~~vi~v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||.-+- ......++.+++++++|+|++ .....+....|++++... +...++|+++|+||+|+.+...
T Consensus 213 DtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e 292 (390)
T PRK12298 213 DIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE 292 (390)
T ss_pred eCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH
Confidence 78996431 222234688999999999988 344566666666666442 1224689999999999865322
Q ss_pred HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..+.+... . ....+++.+||+++.|++++++++...+
T Consensus 293 l~~~l~~l~~~-~-~~~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 293 AEERAKAIVEA-L-GWEGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred HHHHHHHHHHH-h-CCCCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 22222221111 0 1112578999999999999999998765
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=91.00 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=69.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCHHH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKPHE----IQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~----~~~ 75 (113)
||||+++|...+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+...... +.+
T Consensus 57 DtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~-~~qT~ehl~il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~ 131 (614)
T PRK10512 57 DVPGHEKFLSNMLAGVGGIDHALLVVACDDGV-MAQTREHLAILQL----TGNPMLTVALTKADRVDEARIAEVRRQVKA 131 (614)
T ss_pred ECCCHHHHHHHHHHHhhcCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEECCccCCHHHHHHHHHHHHH
Confidence 89999999777777889999999999998632 2223333333322 2455 579999999865322222 222
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+.... ....+++++||++|.|++++++.|...
T Consensus 132 ~l~~~~--~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 132 VLREYG--FAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred HHHhcC--CCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 221111 124679999999999999999998754
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-12 Score=88.62 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=76.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
||||+..|...+..+++.+|++++|+|+++.. ......++..+.. .++|.++++||+|+.+... ..++...+
T Consensus 74 DTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~ 148 (607)
T PRK10218 74 DTPGHADFGGEVERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLF 148 (607)
T ss_pred ECCCcchhHHHHHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHH
Confidence 89999999999999999999999999998642 2233444555433 4789999999999875432 22333333
Q ss_pred CC-Ccc-CCCCeEEEeccccCCC----------CHHHHHHHHHhhcC
Q psy17510 78 GL-TRI-RDRNWYVQPSCATTAD----------GLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~-~~~-~~~~~~~~~~sa~~~~----------~i~~~~~~l~~~~~ 112 (113)
.. ... ....+|++.+||++|. |+..+++.++..+.
T Consensus 149 ~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 149 VNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred hccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 21 111 1245789999999998 57888888877653
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-12 Score=86.24 Aligned_cols=94 Identities=23% Similarity=0.258 Sum_probs=64.3
Q ss_pred CCCCccC--------chhhHHhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH
Q psy17510 1 DVGGQDK--------IRPLWRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAMKP 70 (113)
Q Consensus 1 D~~G~~~--------~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 70 (113)
||||++. +......++..+|++++|+|++++.+.. ....|+.. .++|+++++||+|+.+. .
T Consensus 55 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~D~~~~--~ 125 (435)
T PRK00093 55 DTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK-------SNKPVILVVNKVDGPDE--E 125 (435)
T ss_pred ECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCcEEEEEECccCccc--h
Confidence 8999987 3344556789999999999998753322 22333332 36899999999997541 1
Q ss_pred HHHHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHh
Q psy17510 71 HEIQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
....+.... ++ .++++||+++.|+.++++++..
T Consensus 126 ~~~~~~~~l------g~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 ADAYEFYSL------GLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred hhHHHHHhc------CCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 122222111 11 2679999999999999999876
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-12 Score=82.63 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=67.2
Q ss_pred CCCCccCch--------hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHH
Q psy17510 1 DVGGQDKIR--------PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPH 71 (113)
Q Consensus 1 D~~G~~~~~--------~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~ 71 (113)
||||..... ......+..+|++++|+|+++.. .....++...... .+.|+++++||+|+... ....
T Consensus 59 DTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~--~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~ 133 (292)
T PRK00089 59 DTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKI--GPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELL 133 (292)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCC--ChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHH
Confidence 899975432 23344678999999999998732 2222333333221 46899999999998632 2222
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+.+... ....+++.+||+++.|++++++++...+
T Consensus 134 ~~~~~l~~~---~~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 134 PLLEELSEL---MDFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred HHHHHHHhh---CCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 222222211 1245789999999999999999998765
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.6e-12 Score=86.10 Aligned_cols=102 Identities=19% Similarity=0.135 Sum_probs=76.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~ 77 (113)
|||||-.|+.-..+.+.-|+++|+|+|++...--+-...++..+ + .+..++.|+||+|++.+... .++.+.|
T Consensus 131 DTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF 205 (650)
T KOG0462|consen 131 DTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADPERVENQLFELF 205 (650)
T ss_pred cCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999999999998642222223333333 2 57889999999999875432 2333444
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
... .-+++.+||++|.|+.++++.+++.+.
T Consensus 206 ~~~-----~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 206 DIP-----PAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred cCC-----ccceEEEEeccCccHHHHHHHHHhhCC
Confidence 432 226899999999999999999998653
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=84.27 Aligned_cols=110 Identities=28% Similarity=0.437 Sum_probs=83.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR----------DRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
|++||+..++.|.+|+.++++++||+|.++. ..+.++...++.+...+...++|+++++||.|+...
T Consensus 167 DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~ 246 (317)
T cd00066 167 DVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIK 246 (317)
T ss_pred CCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhc
Confidence 8999999999999999999999999999863 568888889999988877789999999999995221
Q ss_pred ---------------CCHHH----HHHHhCCC-ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 68 ---------------MKPHE----IQEKLGLT-RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 68 ---------------~~~~~----~~~~~~~~-~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+..+ +.+++... ...++.+..+.++|.+..++..+|+.+...
T Consensus 247 ~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~ 309 (317)
T cd00066 247 KSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDI 309 (317)
T ss_pred CCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHH
Confidence 11111 12222110 012356778899999999999988876543
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.6e-12 Score=87.96 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=68.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-----------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----------- 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----------- 69 (113)
||||++.|..++..++..+|++++|+|+++... ......+..+.. .++|+++++||+|+.+...
T Consensus 77 DTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~-~qt~e~i~~~~~----~~vpiIvviNK~D~~~~~~~~~~~~~~e~~ 151 (586)
T PRK04004 77 DTPGHEAFTNLRKRGGALADIAILVVDINEGFQ-PQTIEAINILKR----RKTPFVVAANKIDRIPGWKSTEDAPFLESI 151 (586)
T ss_pred ECCChHHHHHHHHHhHhhCCEEEEEEECCCCCC-HhHHHHHHHHHH----cCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence 899999999999989999999999999986211 112222333322 4689999999999853111
Q ss_pred ---HHHHH-----------HHhCCCccC----------CCCeEEEeccccCCCCHHHHHHHHH
Q psy17510 70 ---PHEIQ-----------EKLGLTRIR----------DRNWYVQPSCATTADGLYEGLTWLT 108 (113)
Q Consensus 70 ---~~~~~-----------~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~l~ 108 (113)
...+. ..+....+. ...++++++||++|.|+.++++.+.
T Consensus 152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 01111 111111110 1357899999999999999888765
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.9e-12 Score=89.43 Aligned_cols=99 Identities=17% Similarity=0.100 Sum_probs=65.9
Q ss_pred CCCCccC--------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDK--------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~--------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||.+. +......++..+|++++|+|.++..... ...|...+.. .++|+++|+||+|+.... ..
T Consensus 329 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~----~~~pvIlV~NK~D~~~~~--~~ 401 (712)
T PRK09518 329 DTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTST-DERIVRMLRR----AGKPVVLAVNKIDDQASE--YD 401 (712)
T ss_pred eCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh----cCCCEEEEEECcccccch--hh
Confidence 8999764 3345566889999999999997642211 1234444432 578999999999985421 11
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..... .. ..+++||++|.|+.+++++++..+
T Consensus 402 ~~~~~~lg----~~-~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 402 AAEFWKLG----LG-EPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred HHHHHHcC----CC-CeEEEECCCCCCchHHHHHHHHhc
Confidence 12211111 11 246899999999999999998765
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-12 Score=85.37 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=66.4
Q ss_pred CCCCc--------cCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQ--------DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~--------~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||. +.+..+...+++.+|++++|+|..+..+..+ ..+...+.+ .++|+++++||+|+.+....
T Consensus 53 DTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~----~~~piilVvNK~D~~~~~~~-- 125 (429)
T TIGR03594 53 DTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED-EEIAKWLRK----SGKPVILVANKIDGKKEDAV-- 125 (429)
T ss_pred ECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH----hCCCEEEEEECccCCccccc--
Confidence 89996 3445556678899999999999986433322 122222222 36899999999998653221
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+.... ...+++++||.++.|+.++++++...+
T Consensus 126 ~~~~~~l-----g~~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 126 AAEFYSL-----GFGEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred HHHHHhc-----CCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence 1111111 111478999999999999999988765
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=90.70 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=69.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-----------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----------- 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----------- 69 (113)
|||||+.|..++...+..+|++++|+|+++.-. ......+..+.. .++|+++++||+|+.+...
T Consensus 532 DTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~-~qT~e~I~~lk~----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~ 606 (1049)
T PRK14845 532 DTPGHEAFTSLRKRGGSLADLAVLVVDINEGFK-PQTIEAINILRQ----YKTPFVVAANKIDLIPGWNISEDEPFLLNF 606 (1049)
T ss_pred ECCCcHHHHHHHHhhcccCCEEEEEEECcccCC-HhHHHHHHHHHH----cCCCEEEEEECCCCccccccccchhhhhhh
Confidence 899999999998888899999999999986311 112223333322 3689999999999853211
Q ss_pred -------HHHHHH-------HhCCCcc----------CCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 70 -------PHEIQE-------KLGLTRI----------RDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 70 -------~~~~~~-------~~~~~~~----------~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
.+++.. .+....+ -...++++++||++|.|++++..++..
T Consensus 607 ~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 607 NEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 011110 0111100 024578999999999999999988753
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-12 Score=85.40 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=70.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||++.|-+.+......+|++++|+|+..........+.+..+... .-.|+++++||+|+.+..... ++.+.
T Consensus 123 DtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l---gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~ 199 (460)
T PTZ00327 123 DCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLVKEAQAQDQYEEIRNF 199 (460)
T ss_pred eCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc---CCCcEEEEEecccccCHHHHHHHHHHHHHH
Confidence 89999999777667788999999999998632122223333322111 234789999999986522211 22221
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.. . ....++++.+||++|.|++.+++.|...+
T Consensus 200 l~~-~-~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 200 VKG-T-IADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHh-h-ccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 111 1 12467899999999999999999988544
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-12 Score=85.93 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=61.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhH-HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC------HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI-DEARQELHRIINDREMRDAIILIFANKQDLPDAMK------PHEI 73 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~~~~ 73 (113)
||||+++|.......+..+|++++|+|++++... .....++...... ...|+++++||+|+.+... .+++
T Consensus 90 DtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~~~i 166 (425)
T PRK12317 90 DCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL---GINQLIVAINKMDAVNYDEKRYEEVKEEV 166 (425)
T ss_pred ECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc---CCCeEEEEEEccccccccHHHHHHHHHHH
Confidence 8999998876555667899999999999862111 1122233322211 2247999999999865211 1122
Q ss_pred HHHhCCCccCCCCeEEEeccccCCCCHHH
Q psy17510 74 QEKLGLTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
.+.+....+....++++++||++|.|+.+
T Consensus 167 ~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 167 SKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 22222112222346899999999999986
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-12 Score=77.32 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=65.5
Q ss_pred CCCCc----------cCchhhHHhhhcCC---cEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQ----------DKIRPLWRHYYTGT---QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~----------~~~~~~~~~~~~~~---~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||. +++..+...++..+ +++++++|.+.+.+... ..+...+ .. .++|+++++||+|+.+.
T Consensus 76 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~i~~~l-~~---~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 76 DLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELD-LQMIEWL-KE---YGIPVLIVLTKADKLKK 150 (196)
T ss_pred CCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHH-HHHHHHH-HH---cCCcEEEEEECcccCCH
Confidence 88994 45555666666655 67888898876533222 1112222 21 46899999999998653
Q ss_pred CCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 68 MKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...+...+... ..+.....+++++||+++.|++++++.+...++
T Consensus 151 ~~~~~~~~~i~-~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 151 GERKKQLKKVR-KALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHHH-HHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 22222221111 111111456889999999999999999987653
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.1e-12 Score=74.13 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=62.6
Q ss_pred chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCe
Q psy17510 8 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 87 (113)
Q Consensus 8 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 87 (113)
++.++++..+++|++++|+|++++....+ ..+...+ .. .++|+++++||+|+.+........ .+. ...+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~-~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~~----~~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV-LE---LGKKLLIVLNKADLVPKEVLEKWK-SIK----ESEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH-Hh---CCCcEEEEEEhHHhCCHHHHHHHH-HHH----HhCCC
Confidence 56788899999999999999986532221 1222222 21 468999999999985421111111 111 11234
Q ss_pred EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 88 YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 88 ~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+++.+||+++.|++++++.+.+.+
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHH
Confidence 688999999999999999987653
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.9e-12 Score=73.75 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=66.9
Q ss_pred CCCCccCchh--------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC-CCCHH
Q psy17510 1 DVGGQDKIRP--------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD-AMKPH 71 (113)
Q Consensus 1 D~~G~~~~~~--------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~ 71 (113)
||||...... ....++..+|++++|+|++++. .....++...... .+.|+++++||+|+.. .....
T Consensus 57 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~ 131 (168)
T cd04163 57 DTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLL 131 (168)
T ss_pred ECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHH
Confidence 7899754432 3455688999999999998762 2222233222221 3589999999999863 22223
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+....+... ....+++.+|++++.|+++++++|.+.
T Consensus 132 ~~~~~~~~~---~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 132 PLLEKLKEL---GPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred HHHHHHHhc---cCCCceEEEEeccCCChHHHHHHHHhh
Confidence 333332211 123578999999999999999999765
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-11 Score=73.39 Aligned_cols=110 Identities=24% Similarity=0.400 Sum_probs=75.0
Q ss_pred CCCCccCchhhHHhhhc---CCcEEEEEEECCC-hhhHHHHHHHHHHHHcCc--CCCCCeEEEEEeCCCCCCCCCHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYT---GTQGLIFVVDCAD-RDRIDEARQELHRIINDR--EMRDAIILIFANKQDLPDAMKPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~---~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~D~~~~~~~~~~~ 74 (113)
|.|||.|.+.....|++ .+-+++||+|..- +....+..+++..+.... ...+.|+++++||.|+..+.+.+-+.
T Consensus 88 D~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir 167 (238)
T KOG0090|consen 88 DLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIR 167 (238)
T ss_pred eCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHH
Confidence 89999999987777777 7999999999874 334555555555554433 23567999999999986654432221
Q ss_pred HHh-----------C------------------------CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKL-----------G------------------------LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~-----------~------------------------~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.+ + ...+....+.+.++|++++ +++++.+|+.+.+
T Consensus 168 ~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 168 QQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 100 0 0011124567899999888 8999999998753
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=82.22 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=76.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
|||||=.|.--..+.+..|.+.++|+|++..-.-+-..+.+..+ ..+..++.|+||+|++.+.. .+++...+
T Consensus 82 DTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-----e~~LeIiPViNKIDLP~Adpervk~eIe~~i 156 (603)
T COG0481 82 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENNLEIIPVLNKIDLPAADPERVKQEIEDII 156 (603)
T ss_pred CCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-----HcCcEEEEeeecccCCCCCHHHHHHHHHHHh
Confidence 89999988877777889999999999998652222223333333 25789999999999987543 34555555
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
++... ..+.+||++|.|++++++.++..+.
T Consensus 157 Gid~~-----dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 157 GIDAS-----DAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred CCCcc-----hheeEecccCCCHHHHHHHHHhhCC
Confidence 65433 3669999999999999999998763
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-11 Score=74.05 Aligned_cols=95 Identities=22% Similarity=0.171 Sum_probs=62.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCH-H----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-H----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~-~----~~~ 74 (113)
||||+..|.......+..+|++++|+|+..... ....+++..+.. .++| +++++||+|+...... + ++.
T Consensus 71 DtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~ 145 (195)
T cd01884 71 DCPGHADYIKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVR 145 (195)
T ss_pred ECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHH
Confidence 899999888777778899999999999976422 223344444433 3566 7799999998532211 1 222
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCH
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGL 100 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i 100 (113)
+.+....++...++++.+||++|.++
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCC
Confidence 22222222334678999999998874
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=75.64 Aligned_cols=97 Identities=19% Similarity=0.044 Sum_probs=61.9
Q ss_pred chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHh---CCCccC
Q psy17510 8 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKL---GLTRIR 83 (113)
Q Consensus 8 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~---~~~~~~ 83 (113)
++.++..++.++|++++|+|++++... |...+... ..++|+++|+||+|+.+... ........ ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 467888899999999999999875311 11112111 24689999999999864322 22121111 000000
Q ss_pred CCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 84 DRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 84 ~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+++.+||+++.|++++++++...+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 0112478999999999999999998754
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-11 Score=75.38 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++|...+...+..+|++++|+|+++... .........+... ...++++++||+|+.+... ...+.....
T Consensus 83 DTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~i~~~~~ 158 (208)
T cd04166 83 DTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSLL---GIRHVVVAVNKMDLVDYSEEVFEEIVADYL 158 (208)
T ss_pred ECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHc---CCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence 899999987767778899999999999986532 1222222222211 2245788999999864211 111111111
Q ss_pred --CCccCCCCeEEEeccccCCCCHHH
Q psy17510 79 --LTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 79 --~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
...+....++++.+||+++.|+.+
T Consensus 159 ~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 159 AFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 001111235689999999999864
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.3e-12 Score=71.53 Aligned_cols=61 Identities=23% Similarity=0.418 Sum_probs=49.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH---HHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
|++|++.+...+...+..+|++++|||.+++.+++... .|+..+... ..++|+++++||.|
T Consensus 56 d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 56 DFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred ecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 67888888888777899999999999999998888874 456666432 25699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=74.68 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=57.4
Q ss_pred CCCCc----------cCchhhHHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQ----------DKIRPLWRHYYTG---TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~----------~~~~~~~~~~~~~---~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||. +.+..+...|+.. ++++++|+|.+++-+.... .++..+.. .++|+++++||+|+.+.
T Consensus 70 DtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~----~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 70 DLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE----RGIPVLIVLTKADKLKK 144 (179)
T ss_pred eCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCCH
Confidence 78994 2344444556654 5899999999865333322 33333322 46899999999998653
Q ss_pred CC----HHHHHHHhCCCccCCCCeEEEeccccCCCCHH
Q psy17510 68 MK----PHEIQEKLGLTRIRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 68 ~~----~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 101 (113)
.. ..++.+.+... ...++++++||++++|++
T Consensus 145 ~~~~~~~~~i~~~l~~~---~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 145 SELNKQLKKIKKALKKD---ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHHHHHHHHHHhhc---cCCCceEEEECCCCCCCC
Confidence 22 22233333321 223579999999999973
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-11 Score=79.68 Aligned_cols=106 Identities=20% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCHH-----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKPH-----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~-----~~~ 74 (113)
||||+++|..........+|++++|+|+.... .....+++..+.. .++| +++++||+|+.+..... ++.
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~-~~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~ 155 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVR 155 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHH
Confidence 89999988776666778899999999997632 2223444444433 3677 67899999986432211 222
Q ss_pred HHhCCCccCCCCeEEEeccccCCC--------CHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD--------GLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~--------~i~~~~~~l~~~~ 111 (113)
+.+....+....++++.+||+++. ++..+++.+.+.+
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 222211222234689999999983 5778888776544
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-11 Score=79.24 Aligned_cols=93 Identities=18% Similarity=0.140 Sum_probs=65.0
Q ss_pred hhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCe
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 87 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 87 (113)
..+.+..++++|.+++|+|+.++. .......|+..+.. .++|+++|+||+|+.+........+.+ ...++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~ 150 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGY 150 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCC
Confidence 345566789999999999998764 34444666665522 579999999999986422122222222 12345
Q ss_pred EEEeccccCCCCHHHHHHHHHhh
Q psy17510 88 YVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 88 ~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+++.+||+++.|++++++.+...
T Consensus 151 ~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 151 QPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred eEEEEEcCCCCCHHHHhhhhccc
Confidence 68999999999999999988653
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8e-11 Score=75.39 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=68.7
Q ss_pred CCCCccCchh--------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HH
Q psy17510 1 DVGGQDKIRP--------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PH 71 (113)
Q Consensus 1 D~~G~~~~~~--------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~ 71 (113)
||||.-+-+. .....++.+|+++||+|.+.+... ..+++-+..+. .+.|+++++||+|..+... ..
T Consensus 60 DTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~ 134 (298)
T COG1159 60 DTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLL 134 (298)
T ss_pred eCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHH
Confidence 8999543332 234467889999999999874322 23333333332 4679999999999866444 23
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+.+.+... .....++++||++|.|++.+.+.+..++.
T Consensus 135 ~~~~~~~~~---~~f~~ivpiSA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 135 KLIAFLKKL---LPFKEIVPISALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred HHHHHHHhh---CCcceEEEeeccccCCHHHHHHHHHHhCC
Confidence 333332211 12236999999999999999998887764
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-11 Score=73.22 Aligned_cols=73 Identities=34% Similarity=0.572 Sum_probs=48.3
Q ss_pred CCCCccCchhhH-Hh--hhcCCcEEEEEEECCC-hhhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCCCCCHHHH
Q psy17510 1 DVGGQDKIRPLW-RH--YYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAMKPHEI 73 (113)
Q Consensus 1 D~~G~~~~~~~~-~~--~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~ 73 (113)
|+|||++.+... .. +...+.+||||+|.+. +....+..+++..++.... ....|+++++||+|+..+.+...+
T Consensus 55 D~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~I 133 (181)
T PF09439_consen 55 DIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKI 133 (181)
T ss_dssp EETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHH
T ss_pred ECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHH
Confidence 899999998744 43 5889999999999974 4456666666655544322 357899999999999876554433
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-10 Score=79.35 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=67.8
Q ss_pred CCCCccC-----chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHH
Q psy17510 1 DVGGQDK-----IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEI 73 (113)
Q Consensus 1 D~~G~~~-----~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~ 73 (113)
||||-.. +...+...+..+|+|+||+|+....+..+ ....+.+.+. ..+.|+++|+||+|+.+... ...+
T Consensus 236 DTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~--~K~~PVILVVNKIDl~dreeddkE~L 312 (741)
T PRK09866 236 DTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV--GQSVPLYVLVNKFDQQDRNSDDADQV 312 (741)
T ss_pred ECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc--CCCCCEEEEEEcccCCCcccchHHHH
Confidence 8999743 23344558999999999999986433332 2233334321 12259999999999854221 2333
Q ss_pred HHHhCCC--ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 74 QEKLGLT--RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 74 ~~~~~~~--~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+..... ......-.++.+||++|.|++.+++.+...-
T Consensus 313 le~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 313 RALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred HHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 3322101 0111234699999999999999999988643
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.3e-11 Score=70.55 Aligned_cols=92 Identities=22% Similarity=0.329 Sum_probs=61.3
Q ss_pred CCCCccCch------hhHHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC----C
Q psy17510 1 DVGGQDKIR------PLWRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA----M 68 (113)
Q Consensus 1 D~~G~~~~~------~~~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~ 68 (113)
|+||.-.+. .....|+ ...|++++|+|+++ ++....+..++.+ .++|++++.||+|.... .
T Consensus 53 DlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~i 125 (156)
T PF02421_consen 53 DLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEI 125 (156)
T ss_dssp E----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE
T ss_pred ECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEE
Confidence 788843332 2334454 58999999999986 4444556666654 47999999999996432 2
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHH
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 107 (113)
+.+.+.+.++ +|++.+||+++.|++++++.+
T Consensus 126 d~~~Ls~~Lg--------~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 126 DAEKLSERLG--------VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp -HHHHHHHHT--------S-EEEEBTTTTBTHHHHHHHH
T ss_pred CHHHHHHHhC--------CCEEEEEeCCCcCHHHHHhhC
Confidence 3445555554 468899999999999998864
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.7e-10 Score=71.08 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=47.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+.+|......++..+|++++|+|+++... .....+++.... .++|+++++||+|+...
T Consensus 77 DTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~----~~~P~iivvNK~D~~~a 138 (267)
T cd04169 77 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL----RGIPIITFINKLDREGR 138 (267)
T ss_pred ECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh----cCCCEEEEEECCccCCC
Confidence 899999998877778999999999999986422 222344444422 47899999999998654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7e-11 Score=75.32 Aligned_cols=110 Identities=19% Similarity=0.135 Sum_probs=66.8
Q ss_pred CCCCccCc---hhhHHhh---hcC--CcEEEEEEECCChhhHHHH-H-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH
Q psy17510 1 DVGGQDKI---RPLWRHY---YTG--TQGLIFVVDCADRDRIDEA-R-QELHRIINDREMRDAIILIFANKQDLPDAMKP 70 (113)
Q Consensus 1 D~~G~~~~---~~~~~~~---~~~--~~~vi~v~d~~~~~~~~~~-~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 70 (113)
||||+.++ +..+..+ +.+ ++++++|+|.+...+..+. . .|+....+. ..++|+++++||+|+.+....
T Consensus 103 d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~~~~~~ 180 (253)
T PRK13768 103 DTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLLSEEEL 180 (253)
T ss_pred eCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhcCchhH
Confidence 89998664 3344333 333 8999999999754322222 2 222222111 147899999999998764333
Q ss_pred HHHHHHhCC-----------------------CccC--CCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 71 HEIQEKLGL-----------------------TRIR--DRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 71 ~~~~~~~~~-----------------------~~~~--~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+...+.+.. ..+. ....+++.+|++++.|++++.+++.+.+.
T Consensus 181 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 181 ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 333222221 0000 12357899999999999999999987653
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=67.80 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=58.9
Q ss_pred chhhHHhhhcC---CcEEEEEEECCChhh--HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCcc
Q psy17510 8 IRPLWRHYYTG---TQGLIFVVDCADRDR--IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI 82 (113)
Q Consensus 8 ~~~~~~~~~~~---~~~vi~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 82 (113)
+...+..|+.. .+++++++|...... ......|+.. .+.|+++++||+|+.+................
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~ 140 (170)
T cd01876 68 WGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELK 140 (170)
T ss_pred HHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHH
Confidence 45555556654 468889998875422 2222333332 24799999999998543222222111110000
Q ss_pred -CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 83 -RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 83 -~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++||+++.|+.++++++.+.+
T Consensus 141 ~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 141 LFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred hccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 12345688999999999999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-10 Score=77.61 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=48.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+..|......++..+|++++|+|+++... .....++..... .++|+++++||+|+...
T Consensus 85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~----~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL----RDTPIFTFINKLDRDGR 146 (526)
T ss_pred ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh----cCCCEEEEEECCccccc
Confidence 899999999877788999999999999986422 223455554432 57999999999998653
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-10 Score=76.20 Aligned_cols=105 Identities=20% Similarity=0.172 Sum_probs=67.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCCCCCCCCCH-H----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDLPDAMKP-H----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~-~----~~~ 74 (113)
||||+++|..........+|++++|+|+.... .....+++..+.. .++|.+ +++||+|+.+.... + ++.
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~ 155 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHH
Confidence 89999988776667788999999999998632 2223344444432 467865 57999998642211 1 222
Q ss_pred HHhCCCccCCCCeEEEeccccCCC----------CHHHHHHHHHhh
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD----------GLYEGLTWLTSN 110 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~----------~i~~~~~~l~~~ 110 (113)
+.+....+....++++++||+++. ++..+++.+...
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 222211112235789999999984 677788777654
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.8e-10 Score=71.72 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=47.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|...+..++..+|++++|+|+.+... .....++..+.. .++|+++++||+|+.+
T Consensus 70 DTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~-~~t~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 70 DTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVE-PQTETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred ECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCC-HHHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 899999999889999999999999999986432 222344444433 4689999999999864
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-10 Score=76.37 Aligned_cols=104 Identities=17% Similarity=0.080 Sum_probs=69.3
Q ss_pred CCCCccCchhhH-----------HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--
Q psy17510 1 DVGGQDKIRPLW-----------RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-- 67 (113)
Q Consensus 1 D~~G~~~~~~~~-----------~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-- 67 (113)
||+|.++-.+.. ...+..++.+++|+|++.+-+..+ ......+.. .+.++++++||||+.+.
T Consensus 232 DTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~----~g~~~vIvvNKWDl~~~~~ 306 (444)
T COG1160 232 DTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD-LRIAGLIEE----AGRGIVIVVNKWDLVEEDE 306 (444)
T ss_pred ECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHH----cCCCeEEEEEccccCCchh
Confidence 677765544332 246778999999999987633332 344444433 57899999999998764
Q ss_pred CCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 68 MKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
....++.+.+...+..-...+++.+||+++.|+..+++.+..
T Consensus 307 ~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 307 ATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKE 348 (444)
T ss_pred hHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHH
Confidence 233344333332111123457999999999999999998764
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=79.20 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=63.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhH-------HHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCCC-CCC--
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI-------DEARQELHRIINDREMRDA-IILIFANKQDLPD-AMK-- 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~-~~~-- 69 (113)
|||||+.|...+...+..+|++|+|+|+++. .+ ..+.+.+..+.. .++ ++++++||+|+.+ ..+
T Consensus 91 DtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~~~~~~~ 165 (447)
T PLN00043 91 DAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATTPKYSKA 165 (447)
T ss_pred ECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCchhhhHH
Confidence 8999999998888899999999999999862 22 233343333322 456 5788999999752 111
Q ss_pred -----HHHHHHHhCCCccCCCCeEEEeccccCCCCHH
Q psy17510 70 -----PHEIQEKLGLTRIRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 70 -----~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 101 (113)
.+++...+....+....++++++||++|.|+.
T Consensus 166 ~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 166 RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 12222222222222335789999999999974
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-10 Score=74.63 Aligned_cols=86 Identities=21% Similarity=0.115 Sum_probs=62.6
Q ss_pred hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecc
Q psy17510 15 YYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
.++++|.+++|+|+.++. ++.....|+..+.. .++|+++++||+|+.+.. +..... ......+.+++.+|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~---~~~~~~g~~v~~vS 145 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELEL---VEALALGYPVLAVS 145 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHH---HHHHhCCCeEEEEE
Confidence 378999999999998876 67777778776643 468999999999986531 111110 01112346789999
Q ss_pred ccCCCCHHHHHHHHHh
Q psy17510 94 ATTADGLYEGLTWLTS 109 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~ 109 (113)
|+++.|+++++..+..
T Consensus 146 A~~g~gi~~L~~~L~~ 161 (287)
T cd01854 146 AKTGEGLDELREYLKG 161 (287)
T ss_pred CCCCccHHHHHhhhcc
Confidence 9999999999987754
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-10 Score=76.97 Aligned_cols=93 Identities=19% Similarity=0.152 Sum_probs=58.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCCCCCCCCCHH-----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDLPDAMKPH-----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~~-----~~~ 74 (113)
||||+++|..........+|++++|+|+..... ....+++..+.. .++|.+ +++||+|+.+..... ++.
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~ 155 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence 899999987766667788999999999986322 223344444433 356655 689999986532111 222
Q ss_pred HHhCCCccCCCCeEEEeccccCCC
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD 98 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~ 98 (113)
+.+....+....++++++||+++.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHhcCCCccCccEEECcccccc
Confidence 222211122234789999999874
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-10 Score=81.79 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=66.0
Q ss_pred CCCCccCchhh----------HHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC
Q psy17510 1 DVGGQDKIRPL----------WRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 68 (113)
Q Consensus 1 D~~G~~~~~~~----------~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 68 (113)
||||+..+... .+.++ ..+|++++|+|.++.++ ...+..++.+ .++|+++++||+|+.+..
T Consensus 56 DtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~ 128 (772)
T PRK09554 56 DLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQ 128 (772)
T ss_pred ECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhcc
Confidence 89998776431 22343 47999999999987432 2345555543 479999999999986432
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
......+.+. ...+++++++||+++.|++++.+.+...
T Consensus 129 ~i~id~~~L~----~~LG~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 129 NIRIDIDALS----ARLGCPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred CcHHHHHHHH----HHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 2221112111 1134578899999999999999988654
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4e-10 Score=75.80 Aligned_cols=99 Identities=21% Similarity=0.147 Sum_probs=64.7
Q ss_pred CCCCccCch---------hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQDKIR---------PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~~~~---------~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||+|.+... .+....+..||++|||+|....-+- ..+.+..++.. .++|+++|+||+|.... ..
T Consensus 57 DTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~--~D~~ia~~Lr~---~~kpviLvvNK~D~~~~--e~ 129 (444)
T COG1160 57 DTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITP--ADEEIAKILRR---SKKPVILVVNKIDNLKA--EE 129 (444)
T ss_pred ECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCH--HHHHHHHHHHh---cCCCEEEEEEcccCchh--hh
Confidence 788876332 2334578899999999999763222 22223333221 56999999999997531 11
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+.+++-+ -+.+.+||..|.|+.++.+++...+
T Consensus 130 ~~~efyslG~-----g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 130 LAYEFYSLGF-----GEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred hHHHHHhcCC-----CCceEeehhhccCHHHHHHHHHhhc
Confidence 2222222211 1367999999999999999998765
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-10 Score=66.71 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=60.2
Q ss_pred CCCCcc----CchhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC-CCCCHHHHH
Q psy17510 1 DVGGQD----KIRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLP-DAMKPHEIQ 74 (113)
Q Consensus 1 D~~G~~----~~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~ 74 (113)
||||-- +|.+-.-..-.+||.|++|.|++++. .+.. -+... -++|++-|+||+|+. +..+.+...
T Consensus 42 DTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP---~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~ 112 (143)
T PF10662_consen 42 DTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP---GFASM------FNKPVIGVITKIDLPSDDANIERAK 112 (143)
T ss_pred ECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc---hhhcc------cCCCEEEEEECccCccchhhHHHHH
Confidence 678842 22222233556899999999999753 2221 11122 358999999999997 323333333
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHH
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 108 (113)
+.+...... ++|++|+.++.|++++.++|.
T Consensus 113 ~~L~~aG~~----~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 113 KWLKNAGVK----EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHcCCC----CeEEEECCCCcCHHHHHHHHh
Confidence 333322221 368999999999999999874
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-10 Score=75.15 Aligned_cols=85 Identities=24% Similarity=0.173 Sum_probs=58.6
Q ss_pred cCCcEEEEEEECCChhhH-HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecccc
Q psy17510 17 TGTQGLIFVVDCADRDRI-DEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 95 (113)
.++|.+++|+|+.++... .....|+..+.. .++|+++++||+|+.+. ......... .+...+++++.+||+
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~--~~~~~~~~~--~~~~~g~~v~~vSA~ 150 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDD--LEEARELLA--LYRAIGYDVLELSAK 150 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCC--HHHHHHHHH--HHHHCCCeEEEEeCC
Confidence 899999999999876543 334567666533 57899999999998532 111111111 111234578999999
Q ss_pred CCCCHHHHHHHHHh
Q psy17510 96 TADGLYEGLTWLTS 109 (113)
Q Consensus 96 ~~~~i~~~~~~l~~ 109 (113)
++.|++++++.+..
T Consensus 151 ~g~gi~~L~~~l~g 164 (298)
T PRK00098 151 EGEGLDELKPLLAG 164 (298)
T ss_pred CCccHHHHHhhccC
Confidence 99999999988753
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.2e-10 Score=78.76 Aligned_cols=62 Identities=19% Similarity=0.117 Sum_probs=49.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+..|...+..++..+|++++|+|+++...... ...+..+.. .++|+++++||+|+...
T Consensus 79 DtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 79 DTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQT-ETVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred ECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 899999999999999999999999999987654443 233344432 46899999999998753
|
|
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=70.92 Aligned_cols=92 Identities=28% Similarity=0.365 Sum_probs=62.7
Q ss_pred HHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHc-CcCCCCCeEEEEEeCCCCCCCCCH--HHHHHHhCCCccCCC
Q psy17510 12 WRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIIN-DREMRDAIILIFANKQDLPDAMKP--HEIQEKLGLTRIRDR 85 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~ 85 (113)
....+.+|+.++||+|++.. ..++....+..++-. .....+.|.++|+||+|+++.... .++.+.+..
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~------ 341 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQN------ 341 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCC------
Confidence 34467899999999999976 555655444444422 223467899999999998643221 333333221
Q ss_pred CeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 86 NWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 86 ~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..++++||++++|+.++...|...
T Consensus 342 -~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 -PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred -CcEEEeeeccccchHHHHHHHhhc
Confidence 148899999999999999877653
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=77.88 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=64.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhh------HHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCC-CC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR------IDEARQELHRIINDREMRDAI-ILIFANKQDLPDA-MK--- 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~-~~--- 69 (113)
|||||++|...+......+|++++|+|++...- -..+.+.+..+.. .++| +++++||+|.... .+
T Consensus 91 DtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~~~~~~~~ 166 (446)
T PTZ00141 91 DAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKTVNYSQER 166 (446)
T ss_pred ECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccccchhhHHH
Confidence 899999998888888899999999999985320 0233344444422 4666 6799999995321 11
Q ss_pred H----HHHHHHhCCCccCCCCeEEEeccccCCCCHHH
Q psy17510 70 P----HEIQEKLGLTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 70 ~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
. +++...+....+....++++.+|+.+|.|+.+
T Consensus 167 ~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 167 YDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 22333333222233468899999999999853
|
|
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-10 Score=75.07 Aligned_cols=110 Identities=28% Similarity=0.498 Sum_probs=82.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
|+|||+.-++.|-+++.++++||||++.++ ..++.++..+++.+..++...+.++++..||.|+-..
T Consensus 201 DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~ 280 (354)
T KOG0082|consen 201 DVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIK 280 (354)
T ss_pred eCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhc
Confidence 899999999999999999999999999884 2356777889999999988899999999999997331
Q ss_pred -------------C-CHHH----HHHHhCC-CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 68 -------------M-KPHE----IQEKLGL-TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 68 -------------~-~~~~----~~~~~~~-~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
. +.++ +...+.. ..-..+.+..+.++|.+.++++.+|+.+...
T Consensus 281 ~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~ 342 (354)
T KOG0082|consen 281 KVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT 342 (354)
T ss_pred cCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence 0 1111 1222221 1111256678888999999999999877654
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.10 E-value=9e-10 Score=74.59 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=60.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCH-----HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-----HEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~-----~~~~ 74 (113)
||||+.+|-......+..+|++++|+|+.... .....+++..+.. .++| +++++||+|+.+.... .++.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~ 155 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVR 155 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 89999988776667788999999999998542 2333444544433 4678 7789999998653221 1222
Q ss_pred HHhCCCccCCCCeEEEeccccCCC
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD 98 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~ 98 (113)
+.+....+....++++.+||.++.
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhcc
Confidence 222221222235789999999886
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-10 Score=76.98 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=62.5
Q ss_pred ccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHHHHHHHhCCCccC
Q psy17510 5 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIR 83 (113)
Q Consensus 5 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~ 83 (113)
.+.|.++...+...++++++|+|+.+... .|...+.+. ..++|+++|+||+|+.+. .....+.+... ....
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~--~~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRF--VGGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHH--hCCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence 35677888888899999999999976431 122222221 136799999999998643 22222222110 0011
Q ss_pred CCCe---EEEeccccCCCCHHHHHHHHHh
Q psy17510 84 DRNW---YVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 84 ~~~~---~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
..++ .++.+||+++.|++++++.+.+
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 1122 4789999999999999998865
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=72.47 Aligned_cols=89 Identities=21% Similarity=0.137 Sum_probs=63.8
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecccc
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 95 (113)
..++|.+++|+++....++.....|+..+.. .++|+++|+||+|+.+........+... .+...+++++.+||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 3669999999998876788888888775532 5789999999999965322111211111 112234689999999
Q ss_pred CCCCHHHHHHHHHhh
Q psy17510 96 TADGLYEGLTWLTSN 110 (113)
Q Consensus 96 ~~~~i~~~~~~l~~~ 110 (113)
++.|++++++++...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988754
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=68.69 Aligned_cols=51 Identities=20% Similarity=-0.049 Sum_probs=37.6
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 52 DAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
-+|+++|+||+|+.+ ..+... +.. ..+++++||+++.|++++++.+.+.+.
T Consensus 176 y~p~iiV~NK~Dl~~---~~~~~~-~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 176 YIPCLYVYNKIDLIS---IEELDL-LAR------QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred EeeEEEEEECccCCC---HHHHHH-Hhc------CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 369999999999854 333322 211 124789999999999999999988764
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=73.60 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=66.9
Q ss_pred CCCCccCchhhHH--------hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPLWR--------HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~--------~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||+|.+.-....+ ..++.||.+++|+|.+.+.+-.+ ...+. . ...++|+++|.||.|+.++.....
T Consensus 271 DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d-~~~~~-~----~~~~~~~i~v~NK~DL~~~~~~~~ 344 (454)
T COG0486 271 DTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKED-LALIE-L----LPKKKPIIVVLNKADLVSKIELES 344 (454)
T ss_pred ecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhh-HHHHH-h----cccCCCEEEEEechhcccccccch
Confidence 8999876655432 36789999999999997522222 22222 1 126799999999999977544322
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+ + . ..+.+++.+|++++.|++.+.+.+.+.+
T Consensus 345 ~-~-~------~~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 345 E-K-L------ANGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred h-h-c------cCCCceEEEEecCccCHHHHHHHHHHHH
Confidence 2 1 1 1223588999999999999999887653
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=72.85 Aligned_cols=105 Identities=20% Similarity=0.172 Sum_probs=67.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCCCCCCCCC-HH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDLPDAMK-PH----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~-~~----~~~ 74 (113)
||||+.+|..........+|++++|+|+.... .....+++..+.. .++|.+ +++||+|+.+... .+ ++.
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~ 155 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHH
Confidence 89999888776667789999999999997642 2233444544433 467876 5899999864211 11 222
Q ss_pred HHhCCCccCCCCeEEEeccccCCC----------CHHHHHHHHHhh
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD----------GLYEGLTWLTSN 110 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~----------~i~~~~~~l~~~ 110 (113)
+.+....+....++++.+||+++. |+..+++.|.+.
T Consensus 156 ~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 222211122345789999999864 466777777653
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.7e-10 Score=66.94 Aligned_cols=97 Identities=16% Similarity=0.013 Sum_probs=61.2
Q ss_pred CCCc-cCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 2 VGGQ-DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 2 ~~G~-~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
.||+ .+.-......++.||.+++|+|++.+..... ..+.... .++|++++.||+|+.+........+.+..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~- 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL------GNKPRIIVLNKADLADPKKTKKWLKYFES- 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh------cCCCEEEEEehhhcCChHHHHHHHHHHHh-
Confidence 3454 3444455668899999999999986532211 1122222 35799999999998542111111121111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
....++.+||+++.|++++.+.+...
T Consensus 74 ----~~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 74 ----KGEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 12357899999999999999988765
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.5e-10 Score=69.09 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=48.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+..|......++..+|++++|+|+.+..... ....++.... .++|+++++||+|+.
T Consensus 79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~-t~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQ-TETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCcc
Confidence 89999999999999999999999999998754433 2444444433 357999999999975
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=68.31 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=46.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|...+..++..+|++++|+|+++..... ....++.+.. .++|+++++||+|+..
T Consensus 70 DtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~-~~~~~~~~~~----~~~p~iivvNK~D~~~ 130 (268)
T cd04170 70 DTPGYADFVGETRAALRAADAALVVVSAQSGVEVG-TEKLWEFADE----AGIPRIIFINKMDRER 130 (268)
T ss_pred ECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCccCC
Confidence 89999988888888999999999999998753332 2233333322 4689999999999765
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.3e-09 Score=75.21 Aligned_cols=61 Identities=16% Similarity=0.106 Sum_probs=47.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|...+..++..+|++++|+|++...... ...++..+.. .++|+++++||+|+..
T Consensus 66 DtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~-~~~~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 66 DTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQ-TETVWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred ECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 89999999888888999999999999998754433 2334444432 4689999999999865
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=73.71 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=60.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++|...+...+..+|++++|+|+..... ....+.+..+... ...++++++||+|+.+... ..++.+.+.
T Consensus 86 DtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~i~~~~~ 161 (406)
T TIGR02034 86 DTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVFENIKKDYL 161 (406)
T ss_pred eCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHc---CCCcEEEEEEecccccchHHHHHHHHHHHH
Confidence 899999997766668899999999999975421 1122222222221 2346899999999864211 112222221
Q ss_pred C--CccCCCCeEEEeccccCCCCHHH
Q psy17510 79 L--TRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 79 ~--~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
. .......++++++||++|.|+.+
T Consensus 162 ~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 162 AFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHcCCCCccEEEeecccCCCCcc
Confidence 0 00111245799999999999875
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.9e-09 Score=74.37 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=47.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+.++...+..++..+|++++|+|+.+..... ...++..+.. .++|+++++||+|+.+
T Consensus 81 DTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 81 DTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQ-SETVWRQANR----YEVPRIAFVNKMDKTG 141 (689)
T ss_pred ECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 89999999888889999999999999998753333 2334444432 4689999999999875
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.9e-09 Score=72.25 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=46.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|......++..+|++++|+|+++.. ......+++.... .++|+++++||+|+..
T Consensus 86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~----~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL----RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh----cCCCEEEEEECccccC
Confidence 89999999887777889999999999998641 2223444444422 5689999999999854
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-09 Score=63.86 Aligned_cols=89 Identities=12% Similarity=0.023 Sum_probs=55.8
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccc
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 94 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 94 (113)
.++.+|++++|+|++++.... ...+.+.+... ..++|+++++||+|+.+........+.+... .....+.+||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~--~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE--KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc--cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEeec
Confidence 567899999999998763211 11222222211 2458999999999986432222223333221 1223578999
Q ss_pred cCCCCHHHHHHHHHhh
Q psy17510 95 TTADGLYEGLTWLTSN 110 (113)
Q Consensus 95 ~~~~~i~~~~~~l~~~ 110 (113)
+++.|++++.+.+...
T Consensus 78 ~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 78 NNPFGKGSLIQLLRQF 93 (157)
T ss_pred cccccHHHHHHHHHHH
Confidence 9999999999888654
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6e-09 Score=71.31 Aligned_cols=106 Identities=15% Similarity=0.168 Sum_probs=64.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCH-H----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-H----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~-~----~~~ 74 (113)
||||+.+|-.........+|++++|+|+.... .....+.+..+.. .++| +++++||+|+.+.... + ++.
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~ 204 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELR 204 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHH
Confidence 89999988765555667899999999987542 2223444444433 4678 5789999998642211 1 111
Q ss_pred HHhCCCccCCCCeEEEecccc---CCCC-------HHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCAT---TADG-------LYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~---~~~~-------i~~~~~~l~~~~ 111 (113)
+.+....+....++++.+|+. ++.| +..+++.+...+
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 222111122235788888875 4444 567777776543
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.8e-10 Score=76.09 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=59.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++|...+......+|++++|+|+.....- ...+.+..+... ...|+++++||+|+.+... ..++.+.+.
T Consensus 113 DTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~-qt~~~~~l~~~l---g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~ 188 (474)
T PRK05124 113 DTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-QTRRHSFIATLL---GIKHLVVAVNKMDLVDYSEEVFERIREDYL 188 (474)
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc-cchHHHHHHHHh---CCCceEEEEEeeccccchhHHHHHHHHHHH
Confidence 8999999976555567999999999999754211 111111112111 2247899999999864211 122222221
Q ss_pred C--CccC-CCCeEEEeccccCCCCHHHH
Q psy17510 79 L--TRIR-DRNWYVQPSCATTADGLYEG 103 (113)
Q Consensus 79 ~--~~~~-~~~~~~~~~sa~~~~~i~~~ 103 (113)
. .... ....+++.+||++|.|+.+.
T Consensus 189 ~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 189 TFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 0 0000 13568999999999998653
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=66.55 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=47.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+.+|...+..++..+|++++|+|+++..+.. ...++..... .++|+++++||+|+.
T Consensus 77 DtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 77 DTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred ECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECcccC
Confidence 89999999988888999999999999998754443 2344554432 358999999999974
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.8e-09 Score=71.21 Aligned_cols=93 Identities=20% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC-HH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK-PH----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~~----~~~ 74 (113)
||||+++|-.........+|++++|+|+.+.. .....+++..+.. .++| +++++||+|+.+... .+ ++.
T Consensus 150 DtPGh~~f~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~ 224 (478)
T PLN03126 150 DCPGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVR 224 (478)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHH
Confidence 89999999877777888999999999998642 2333455555533 4677 788999999865221 11 222
Q ss_pred HHhCCCccCCCCeEEEeccccCCC
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD 98 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~ 98 (113)
+.+....+....++++.+|+.++.
T Consensus 225 ~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 225 ELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHhcCCCcCcceEEEEEccccc
Confidence 222211222346789999998874
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-09 Score=74.88 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=70.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC-------CC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD---RDRIDEARQELHRIINDREMRDAIILIFANKQDLP-------DA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-------~~--- 67 (113)
||||++.|.+++.....-||..|+|+|+.. +++.+. ++.++. .+.|++++.||+|.. +.
T Consensus 546 dtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR~----rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 546 DTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLRM----RKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred cCCCchhhhhhhhccccccceEEEEeehhccCCcchhHH----HHHHHh----cCCCeEEeehhhhhhcccccCCCchHH
Confidence 899999999999999999999999999974 333332 333432 578999999999942 10
Q ss_pred ----CCHHH-----------HHHHhC---CC---ccC----CCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 68 ----MKPHE-----------IQEKLG---LT---RIR----DRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 68 ----~~~~~-----------~~~~~~---~~---~~~----~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..... +...|. ++ ++. +..+.++++||.+|.|+.+++-+|+..
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 00011 111121 11 111 234568999999999999999998864
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-09 Score=73.35 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=72.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCc-CCCCCeEEEEEeCCCCCCCCCH--HH----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDR-EMRDAIILIFANKQDLPDAMKP--HE---- 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~--~~---- 72 (113)
||+..+.-+......++.||++.++++++++.+++.. ..|+-.+.+.- ...++|+|+|+||+|.....+. +.
T Consensus 62 D~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~p 141 (625)
T KOG1707|consen 62 DTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLP 141 (625)
T ss_pred ecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHH
Confidence 3444444444557788999999999999999999888 57888886531 1257999999999998765433 11
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
+...+.... .+++|||++..++.++|....+
T Consensus 142 im~~f~EiE------tciecSA~~~~n~~e~fYyaqK 172 (625)
T KOG1707|consen 142 IMIAFAEIE------TCIECSALTLANVSELFYYAQK 172 (625)
T ss_pred HHHHhHHHH------HHHhhhhhhhhhhHhhhhhhhh
Confidence 222222111 2779999999999999986554
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-08 Score=66.99 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=57.8
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCCCccCCCCeEEEecc
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
....||+++.|+|++++...+....-..-+ ..-....+|+++|.||+|+..... ...+... . . ..+.+|
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL-~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~-~-------~-~~v~iS 337 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVL-AEIGADEIPIILVLNKIDLLEDEEILAELERG-S-------P-NPVFIS 337 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHH-HHcCCCCCCEEEEEecccccCchhhhhhhhhc-C-------C-CeEEEE
Confidence 456799999999999985544433322222 222235699999999999754322 1111111 1 1 366999
Q ss_pred ccCCCCHHHHHHHHHhhc
Q psy17510 94 ATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~~~ 111 (113)
|+++.|++.+++.+...+
T Consensus 338 A~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 338 AKTGEGLDLLRERIIELL 355 (411)
T ss_pred eccCcCHHHHHHHHHHHh
Confidence 999999999999887654
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.9e-09 Score=74.50 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=59.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++|..........+|++++|+|+..... ....+.+..+... ...|+++++||+|+.+... ..++...+.
T Consensus 110 DtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~~~~i~~~i~ 185 (632)
T PRK05506 110 DTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL---GIRHVVLAVNKMDLVDYDQEVFDEIVADYR 185 (632)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh---CCCeEEEEEEecccccchhHHHHHHHHHHH
Confidence 899999887666667889999999999975421 1112222222211 2368899999999864111 122222221
Q ss_pred C--CccCCCCeEEEeccccCCCCHHH
Q psy17510 79 L--TRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 79 ~--~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
. ....-...+++.+||++|.|+.+
T Consensus 186 ~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 186 AFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHcCCCCccEEEEecccCCCccc
Confidence 0 00111345789999999999873
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-09 Score=67.99 Aligned_cols=89 Identities=15% Similarity=0.030 Sum_probs=58.0
Q ss_pred hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEE
Q psy17510 10 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 89 (113)
Q Consensus 10 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (113)
......++.+|++++|+|+..+.+... ..+.... .++|+++|.||+|+.+........+.+.. .+.++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~v 80 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKA 80 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeE
Confidence 345668899999999999976533221 2223332 35799999999998542212222222211 12357
Q ss_pred EeccccCCCCHHHHHHHHHhh
Q psy17510 90 QPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 90 ~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+.+||+++.|+.++.+.+...
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKL 101 (276)
T ss_pred EEEECCCcccHHHHHHHHHHH
Confidence 899999999999998877654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-08 Score=61.80 Aligned_cols=101 Identities=14% Similarity=0.222 Sum_probs=64.7
Q ss_pred ccCchhhHHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH----HHHHHHh
Q psy17510 5 QDKIRPLWRHYYTG---TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP----HEIQEKL 77 (113)
Q Consensus 5 ~~~~~~~~~~~~~~---~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~ 77 (113)
++++..+...|++. -.++++++|...+..-.+. +.++-+.+ .++|++++.||+|..+.... ..+.+.+
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l 164 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE----LGIPVIVVLTKADKLKKSERNKQLNKVAEEL 164 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEccccCChhHHHHHHHHHHHHh
Confidence 56677777888765 3788888998765332221 22333322 47999999999998764332 3344444
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...... ..+ ++..|+.++.|++++...|.+.+.
T Consensus 165 ~~~~~~-~~~-~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 165 KKPPPD-DQW-VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred cCCCCc-cce-EEEEecccccCHHHHHHHHHHHhh
Confidence 432221 112 778888899999999998877653
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.89 E-value=8e-09 Score=61.29 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=51.5
Q ss_pred cEEEEEEECCChhhHHHHHHHHH-HHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCC
Q psy17510 20 QGLIFVVDCADRDRIDEARQELH-RIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTAD 98 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 98 (113)
|++++|+|+.++.+.. ..++. .... ..++|+++++||+|+.+.....+....+.. ....+++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~--~~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~----~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTR--SPDIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRH----SYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCcccc--CHHHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHh----hCCceEEEEeccCCc
Confidence 6899999998764333 22333 2222 156899999999998542111111111211 123457899999999
Q ss_pred CHHHHHHHHHh
Q psy17510 99 GLYEGLTWLTS 109 (113)
Q Consensus 99 ~i~~~~~~l~~ 109 (113)
|++++.+.+..
T Consensus 72 gi~~L~~~i~~ 82 (155)
T cd01849 72 GIEKKESAFTK 82 (155)
T ss_pred ChhhHHHHHHH
Confidence 99999998754
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=71.45 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=47.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|...+...+..+|++++|+|+...... .....+..+.. .++|+++++||+|+.+
T Consensus 79 DTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~-qt~~i~~~~~~----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 79 DTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEP-QSETVWRQADK----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred cCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 8999998888888899999999999999865322 22344444433 4689999999999875
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-09 Score=71.69 Aligned_cols=109 Identities=27% Similarity=0.442 Sum_probs=80.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---- 66 (113)
|+|||..-++.|.+++.+.++||||+++++ ..++.+...+++.+...+...+.|++|+.||.|+-.
T Consensus 242 DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~ 321 (389)
T PF00503_consen 242 DVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLK 321 (389)
T ss_dssp EETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTT
T ss_pred cCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHcc
Confidence 789999999999999999999999999873 245888899999999888888999999999999411
Q ss_pred --C--------------CCHHHHH----HHhCCCccCC---CCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 67 --A--------------MKPHEIQ----EKLGLTRIRD---RNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 67 --~--------------~~~~~~~----~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
. .+..... +.+....-.. ..+.++.++|.+...+..+|+.+..
T Consensus 322 ~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~ 387 (389)
T PF00503_consen 322 KGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKD 387 (389)
T ss_dssp TSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHH
T ss_pred CCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcC
Confidence 1 1112221 2222111111 5567889999999999999887765
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=58.73 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=47.3
Q ss_pred hhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEe
Q psy17510 14 HYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP 91 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (113)
..++.+|++++|+|+.++.+.. ...+++... ..++|+++++||+|+.+........+.+. ..+.+++.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~ii~ 76 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVVVF 76 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeEEE
Confidence 4678999999999998764322 223333322 14689999999999854322222222222 12346888
Q ss_pred ccccCCCC
Q psy17510 92 SCATTADG 99 (113)
Q Consensus 92 ~sa~~~~~ 99 (113)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99987653
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.2e-08 Score=62.81 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=60.4
Q ss_pred hhhcCCcEEEEEEECCChhh--HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---------------CC--HHHHH
Q psy17510 14 HYYTGTQGLIFVVDCADRDR--IDEARQELHRIINDREMRDAIILIFANKQDLPDA---------------MK--PHEIQ 74 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---------------~~--~~~~~ 74 (113)
.....||.+++|+|++++.. ......-++.. .++|-+++.||.|.... .+ ..++.
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 46778999999999996321 11112223333 46899999999997543 11 22344
Q ss_pred HHhCCCcc-----CCCCe----EEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 75 EKLGLTRI-----RDRNW----YVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 75 ~~~~~~~~-----~~~~~----~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+++..... ...+| .+|.+||++|.|++++.++|..+..
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 44442221 11233 4899999999999999999987653
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.9e-09 Score=66.63 Aligned_cols=88 Identities=17% Similarity=0.102 Sum_probs=57.8
Q ss_pred hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEE
Q psy17510 11 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 90 (113)
Q Consensus 11 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (113)
.....++.+|++++|+|+..+.+.. ..++.... .++|+++|.||+|+.+....+...+.+. ..+.+++
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~--~~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi 84 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSE--NPMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKAL 84 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCC--ChhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEE
Confidence 3456889999999999997653322 12333332 2589999999999854211112222221 1134678
Q ss_pred eccccCCCCHHHHHHHHHhh
Q psy17510 91 PSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 91 ~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+||+++.|++.+.+.+...
T Consensus 85 ~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 85 AINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred EEECCCcccHHHHHHHHHHH
Confidence 99999999999988877654
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-08 Score=66.98 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=63.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhh------HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR------IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH--- 71 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~--- 71 (113)
|+|||+.|-+-+-.....||+.|+|+|+++.+. -....+..-..+. ..-..+++++||+|..+ .+.+
T Consensus 91 DaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t---lGi~~lIVavNKMD~v~-wde~rf~ 166 (428)
T COG5256 91 DAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART---LGIKQLIVAVNKMDLVS-WDEERFE 166 (428)
T ss_pred eCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh---cCCceEEEEEEcccccc-cCHHHHH
Confidence 899998888766678889999999999986521 1112222222211 12357899999999876 3322
Q ss_pred HHHHHh----CCCccCCCCeEEEeccccCCCCHHH
Q psy17510 72 EIQEKL----GLTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 72 ~~~~~~----~~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
++.... ....+....++++++|+..|+|+.+
T Consensus 167 ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 167 EIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 222221 1222334467899999999999754
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=68.12 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=46.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|.......+..+|++++|+|+....... ....+..+.. .++|+++++||+|+.+
T Consensus 81 DTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~q-t~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 81 DTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQ-SETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred eCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchh-hHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 89999888776777888999999999987643222 2444455543 4689999999999864
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.7e-08 Score=66.46 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=74.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL- 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~- 79 (113)
|||||..|..-.+..++=.|++++++|+.+. ....+...+++.+. .+.+.++|+||+|.+++....-+.+.+.+
T Consensus 74 DTPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf 148 (603)
T COG1217 74 DTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLF 148 (603)
T ss_pred cCCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999863 34444555566654 56777999999998876543322222211
Q ss_pred --C--ccCCCCeEEEeccccCCC----------CHHHHHHHHHhhc
Q psy17510 80 --T--RIRDRNWYVQPSCATTAD----------GLYEGLTWLTSNH 111 (113)
Q Consensus 80 --~--~~~~~~~~~~~~sa~~~~----------~i~~~~~~l~~~~ 111 (113)
- .-.....|++..|++.|. +..-+|+.+..++
T Consensus 149 ~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 149 VELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred HHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 1 112356788999998864 3666888877664
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.9e-08 Score=62.92 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=61.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHH--HHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~ 76 (113)
|||||+.|.+-+.---..||+.|+++|+.. .-++.+.+ .+..++ .-.-+++++||+|+.+-.. .+++...
T Consensus 92 DTPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e~~F~~I~~d 165 (431)
T COG2895 92 DTPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSEEVFEAIVAD 165 (431)
T ss_pred cCCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCHHHHHHHHHH
Confidence 899999998877778889999999999953 23444432 333332 2356899999999986321 1222222
Q ss_pred hCC--CccCCCCeEEEeccccCCCCHH
Q psy17510 77 LGL--TRIRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 77 ~~~--~~~~~~~~~~~~~sa~~~~~i~ 101 (113)
+.. ..+......++++||+.|+|+-
T Consensus 166 y~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 166 YLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHcCCCcceEEechhccCCccc
Confidence 210 0111223468999999998853
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=62.34 Aligned_cols=96 Identities=23% Similarity=0.258 Sum_probs=60.6
Q ss_pred HHhhhcCCcEEEEEEECCChh---hHHHHHHHHHHHHc-CcCCCCCeEEEEEeCCCCCCC-CCHHHHHHHhCCCccCCCC
Q psy17510 12 WRHYYTGTQGLIFVVDCADRD---RIDEARQELHRIIN-DREMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIRDRN 86 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~~~---~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~ 86 (113)
....+.+|.+++.|+|++..+ ..++...+..++.. .+...++|.++|+||+|+... ...+.+.+.+... ..
T Consensus 231 FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~----~~ 306 (369)
T COG0536 231 FLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA----LG 306 (369)
T ss_pred HHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh----cC
Confidence 344678999999999998533 34444444444422 234578999999999996543 2233333333321 12
Q ss_pred eEE-EeccccCCCCHHHHHHHHHhhc
Q psy17510 87 WYV-QPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 87 ~~~-~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.. +.+||.+++|++++...+.+.+
T Consensus 307 ~~~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 307 WEVFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred CCcceeeehhcccCHHHHHHHHHHHH
Confidence 221 1299999999999988776543
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=62.13 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=70.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~ 77 (113)
|.|||+-+-+.+..--.--|+.++|++++.+..-..+.+.+-.+-- ..-+.++++-||+|+.+.... .+..+.|
T Consensus 92 DaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI---igik~iiIvQNKIDlV~~E~AlE~y~qIk~F 168 (415)
T COG5257 92 DAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI---IGIKNIIIVQNKIDLVSRERALENYEQIKEF 168 (415)
T ss_pred eCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh---hccceEEEEecccceecHHHHHHHHHHHHHH
Confidence 7888876555444444444999999999976554445444443321 134689999999999763221 1122222
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
-.-.. ..+.|++.+||..+.||+.+++.+..++.
T Consensus 169 vkGt~-Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 169 VKGTV-AENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred hcccc-cCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 21111 24568999999999999999999988764
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.9e-07 Score=60.88 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=57.5
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecccc
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 95 (113)
..+.|.+++|+++..+-.......++..+.. .++|.++|.||+|+.+. ..+..+.+... ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 5788999999999744344444555555533 46788999999999653 21122222111 245678999999
Q ss_pred CCCCHHHHHHHHH
Q psy17510 96 TADGLYEGLTWLT 108 (113)
Q Consensus 96 ~~~~i~~~~~~l~ 108 (113)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998874
|
|
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-08 Score=67.34 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=64.6
Q ss_pred cEEEEEEECCChh--hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCC
Q psy17510 20 QGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTA 97 (113)
Q Consensus 20 ~~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 97 (113)
.+|+|+.|++... +......++..+ .+.+.++|.++|+||+|.....+..+-.+++.........++++++|+.+.
T Consensus 249 aaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 249 SAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQE 326 (620)
T ss_pred hhheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccch
Confidence 5789999999754 677777888888 455789999999999998665443333322222222334578999999999
Q ss_pred CCHHHHHHHHHhh
Q psy17510 98 DGLYEGLTWLTSN 110 (113)
Q Consensus 98 ~~i~~~~~~l~~~ 110 (113)
.|+.++....+..
T Consensus 327 egVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 327 EGVMDVRTTACEA 339 (620)
T ss_pred hceeeHHHHHHHH
Confidence 9998887776654
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=63.69 Aligned_cols=86 Identities=22% Similarity=0.230 Sum_probs=51.4
Q ss_pred cCCc-EEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCCCccCCCC---eEEEe
Q psy17510 17 TGTQ-GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGLTRIRDRN---WYVQP 91 (113)
Q Consensus 17 ~~~~-~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~ 91 (113)
..++ .+++|+|+.+.. ......+.... .++|+++|+||+|+.+.. ..+.+.+... ......+ ..++.
T Consensus 67 ~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAKELGLRPVDVVL 138 (365)
T ss_pred cccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHHhcCCCcCcEEE
Confidence 4444 999999998742 11122233321 367999999999996432 2222221111 0011111 14789
Q ss_pred ccccCCCCHHHHHHHHHhh
Q psy17510 92 SCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 92 ~sa~~~~~i~~~~~~l~~~ 110 (113)
+||+++.|++++++.+.+.
T Consensus 139 vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998654
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.9e-08 Score=58.94 Aligned_cols=81 Identities=21% Similarity=0.205 Sum_probs=52.7
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE--EEEEeCCCCCCC--CCHHHHHHHhCCCccCCCCeEEEeccc
Q psy17510 19 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII--LIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCA 94 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~--ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa 94 (113)
++.+|.|+|+.+...... ... .++.. ++++||+|+.+. .....+.+..... +...+++++||
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa 178 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGADLGVMERDAKKM---RGEKPFIFTNL 178 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhccccccccHHHHHHHHHHh---CCCCCEEEEEC
Confidence 578999999986433211 111 12333 899999999753 2222222222211 23567999999
Q ss_pred cCCCCHHHHHHHHHhhcCC
Q psy17510 95 TTADGLYEGLTWLTSNHKL 113 (113)
Q Consensus 95 ~~~~~i~~~~~~l~~~~~~ 113 (113)
++|+|++++++++.+++.+
T Consensus 179 ~~g~gi~el~~~i~~~~~~ 197 (199)
T TIGR00101 179 KTKEGLDTVIDWIEHYALL 197 (199)
T ss_pred CCCCCHHHHHHHHHhhcCc
Confidence 9999999999999987654
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-07 Score=46.03 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=29.8
Q ss_pred CcEEEEEEECCChh--hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 19 TQGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 19 ~~~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
.++++|++|++... +.++...+++++... ..++|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 58999999999754 677778888888553 46899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=53.82 Aligned_cols=97 Identities=16% Similarity=0.196 Sum_probs=64.5
Q ss_pred CCCCccCchhhHH----hhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHH
Q psy17510 1 DVGGQDKIRPLWR----HYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~----~~~~~~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 75 (113)
||||.-.-.++|- -..+.++.+++|-.++++.+ |.. -+ .....+|+|-+++|.|+.++.+.....+
T Consensus 43 DTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p------~f---~~~~~k~vIgvVTK~DLaed~dI~~~~~ 113 (148)
T COG4917 43 DTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP------GF---LDIGVKKVIGVVTKADLAEDADISLVKR 113 (148)
T ss_pred CCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc------cc---ccccccceEEEEecccccchHhHHHHHH
Confidence 6777543334432 24568999999998887643 221 11 1124567999999999987555444444
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.+.+.. .-++|++|+.+++|++++++.|...
T Consensus 114 ~L~eaG----a~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 114 WLREAG----AEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred HHHHcC----CcceEEEeccCcccHHHHHHHHHhh
Confidence 443221 2369999999999999999988764
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=59.55 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=48.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|||||+.|..-.-.-+..+|..+.|+|+... -...+.++++.+.. .++|++-.+||.|...
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKG-iE~qT~KLfeVcrl----R~iPI~TFiNKlDR~~ 147 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG-IEPQTLKLFEVCRL----RDIPIFTFINKLDREG 147 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccC-ccHHHHHHHHHHhh----cCCceEEEeecccccc
Confidence 8999999987666678889999999999853 23345677777753 6899999999999654
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.6e-07 Score=60.72 Aligned_cols=106 Identities=16% Similarity=0.043 Sum_probs=68.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|+||++++-+-+-......|..++|+|+++.-.. .+-+.+.-+ +. ......++|+||+|..+.....+..+.....
T Consensus 56 Dvpgh~~~i~~miag~~~~d~alLvV~~deGl~~-qtgEhL~iL-dl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~ 131 (447)
T COG3276 56 DVPGHPDFISNLLAGLGGIDYALLVVAADEGLMA-QTGEHLLIL-DL--LGIKNGIIVLTKADRVDEARIEQKIKQILAD 131 (447)
T ss_pred eCCCcHHHHHHHHhhhcCCceEEEEEeCccCcch-hhHHHHHHH-Hh--cCCCceEEEEeccccccHHHHHHHHHHHHhh
Confidence 7899998877666677889999999999643111 111222222 11 1334569999999987644333333322211
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .-...+++.+|+.+|+||+++.+.|....
T Consensus 132 l-~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 132 L-SLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred c-ccccccccccccccCCCHHHHHHHHHHhh
Confidence 1 12445689999999999999999887654
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-06 Score=56.44 Aligned_cols=55 Identities=31% Similarity=0.312 Sum_probs=38.0
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHH-HHHhhc
Q psy17510 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLT-WLTSNH 111 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~-~l~~~~ 111 (113)
..+|+++++||+|+.+. .+..+.+... ....+++.+||+.+.++.++.+ .+..++
T Consensus 213 t~KPvI~VlNK~Dl~~~---~~~~~~l~~~---~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 213 RSKPMVIAANKADIPDA---ENNISKLRLK---YPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred cCCcEEEEEEHHHccCh---HHHHHHHHhh---CCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 35799999999997532 2222222111 1234689999999999999997 587765
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=57.98 Aligned_cols=99 Identities=17% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~ 76 (113)
||+|...-... ....||.++++.++.....+.... ..+.+ ..-++|+||+|+.+... ..++.+.
T Consensus 155 eT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~~~~el~~~ 222 (332)
T PRK09435 155 ETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARRAAAEYRSA 222 (332)
T ss_pred ECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHHHHHHHHHH
Confidence 46665422211 456799999998754433333222 11222 23389999999865332 2233333
Q ss_pred hCCCccCCCC--eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRN--WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....-.... .+++.+||+++.|++++++.+.+.+
T Consensus 223 L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 223 LRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3321111112 3799999999999999999988754
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-06 Score=60.70 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=58.7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC----CCHHHHHHHhCCCccCCCCeEEEecc
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA----MKPHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
+.|+++.|+|+++ ++....+.-++.+ .++|++++.|++|.... .+.+.+.+.++ +|++++|
T Consensus 81 ~~D~ivnVvDAtn---LeRnLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG--------vPVv~tv 145 (653)
T COG0370 81 KPDLIVNVVDATN---LERNLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG--------VPVVPTV 145 (653)
T ss_pred CCCEEEEEcccch---HHHHHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC--------CCEEEEE
Confidence 5699999999987 3444445555554 57899999999997442 34555555555 4688999
Q ss_pred ccCCCCHHHHHHHHHhh
Q psy17510 94 ATTADGLYEGLTWLTSN 110 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~~ 110 (113)
|++|.|++++.+.+.+.
T Consensus 146 A~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 146 AKRGEGLEELKRAIIEL 162 (653)
T ss_pred eecCCCHHHHHHHHHHh
Confidence 99999999999988753
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-07 Score=58.07 Aligned_cols=108 Identities=16% Similarity=0.075 Sum_probs=52.5
Q ss_pred CCCCccCchhhHHhhh--------cCCcEEEEEEECCChhhH-HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYY--------TGTQGLIFVVDCADRDRI-DEARQELHRIINDREMRDAIILIFANKQDLPDAM--- 68 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~--------~~~~~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--- 68 (113)
|||||-++-..|.... ...-++++++|....... .-...++-.+.-. ...+.|.+.|.||+|+.+..
T Consensus 97 DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~~~~~~ 175 (238)
T PF03029_consen 97 DTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLSKYLEF 175 (238)
T ss_dssp E--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-HHHHH
T ss_pred eCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCcccchhHH
Confidence 8999988877665443 456788999998643221 1112222211100 01468999999999997621
Q ss_pred ------C-----------HHHHHHHhCCCccCC-CCe-EEEeccccCCCCHHHHHHHHHhh
Q psy17510 69 ------K-----------PHEIQEKLGLTRIRD-RNW-YVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 69 ------~-----------~~~~~~~~~~~~~~~-~~~-~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+ ...+.+.... .+.. ... .++.+|+.++.|+.+++..+-+.
T Consensus 176 ~l~~~~d~~~l~~~~~~~~~~l~~~i~~-~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 176 ILEWFEDPDSLEDLLESDYKKLNEEIAE-LLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHSHHHHHHHHHT-HHHHHHHHHH-HCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHH-HHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 0 0111111110 1111 122 68999999999999999877553
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-06 Score=56.20 Aligned_cols=83 Identities=22% Similarity=0.122 Sum_probs=55.2
Q ss_pred CcEEEEEEECCChh--hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccC
Q psy17510 19 TQGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATT 96 (113)
Q Consensus 19 ~~~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 96 (113)
+++|+|+||++..+ +.+....+++++... -+.|+++|+||+|..+.....+.......... .....+++..
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~ 320 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGG----EEPLKISATK 320 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhcc----ccccceeeee
Confidence 68999999999754 677788889998654 34899999999998754444433332221111 1133667777
Q ss_pred CCCHHHHHHHHH
Q psy17510 97 ADGLYEGLTWLT 108 (113)
Q Consensus 97 ~~~i~~~~~~l~ 108 (113)
+.+++.+...+.
T Consensus 321 ~~~~d~~~~~v~ 332 (346)
T COG1084 321 GCGLDKLREEVR 332 (346)
T ss_pred hhhHHHHHHHHH
Confidence 777776665544
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-06 Score=52.71 Aligned_cols=103 Identities=9% Similarity=-0.023 Sum_probs=58.7
Q ss_pred CCCCccCchhhHHhh-----hcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-C-----
Q psy17510 1 DVGGQDKIRPLWRHY-----YTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDA-M----- 68 (113)
Q Consensus 1 D~~G~~~~~~~~~~~-----~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~----- 68 (113)
||||........+.| +.++|+++++.+.. +... ..+++.+.. .++|+++|+||+|+... .
T Consensus 58 DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~----~~~~d~~~~~~l~~----~~~~~ilV~nK~D~~~~~~~~~~~ 129 (197)
T cd04104 58 DLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR----FSSNDVKLAKAIQC----MGKKFYFVRTKVDRDLSNEQRSKP 129 (197)
T ss_pred eCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC----CCHHHHHHHHHHHH----hCCCEEEEEecccchhhhhhcccc
Confidence 788875443333333 66789988885432 2222 345555533 36899999999998321 0
Q ss_pred ---CHHHHHHHhCC---CccC---CCCeEEEecccc--CCCCHHHHHHHHHhhc
Q psy17510 69 ---KPHEIQEKLGL---TRIR---DRNWYVQPSCAT--TADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ---~~~~~~~~~~~---~~~~---~~~~~~~~~sa~--~~~~i~~~~~~l~~~~ 111 (113)
...++.+.+.. ..+. ...-++|.+|+. .+.|+..+.+.+...+
T Consensus 130 ~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 130 RSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 11122221110 0111 122368899998 5678888888887654
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.7e-07 Score=55.00 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=40.5
Q ss_pred CCeEEEEEeCCCCCCCCC--HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 52 DAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.|.++++||+|+.+... ..++.+.... . ...++++.+||+++.|++++++++.++.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~--~-~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKK--I-NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHH--h-CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999965322 2233332221 1 1346899999999999999999998764
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-06 Score=55.39 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=51.3
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHh--CCCcc--C--CCCeE
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL--GLTRI--R--DRNWY 88 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~--~~~~~--~--~~~~~ 88 (113)
....+|.++++.++... ++.......+ .++|.++++||+|+.+..........+ ....+ . ....+
T Consensus 144 i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 214 (300)
T TIGR00750 144 IANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPP 214 (300)
T ss_pred HHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCC
Confidence 45567888877544322 2222222223 357889999999987643322111111 11111 1 11235
Q ss_pred EEeccccCCCCHHHHHHHHHhh
Q psy17510 89 VQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 89 ~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
++.+||+++.|++++++++...
T Consensus 215 v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 215 VLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred EEEEEccCCCCHHHHHHHHHHH
Confidence 8999999999999999998764
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-06 Score=54.39 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=61.7
Q ss_pred CCCCccCchh-----hHHhhhcCCcEEEEEEECCChhhHH---HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRP-----LWRHYYTGTQGLIFVVDCADRDRID---EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~-----~~~~~~~~~~~vi~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
|+|||..+-. ..+..++++.++|||+|+...+..+ .....++.+.+. .+++.+.+.+.|+|+.......+
T Consensus 54 D~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~ 131 (232)
T PF04670_consen 54 DCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREE 131 (232)
T ss_dssp EE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHH
T ss_pred EcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHH
Confidence 7899975533 4677899999999999998433222 223344444332 37899999999999865322111
Q ss_pred ----HHHHhCCC--ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 ----IQEKLGLT--RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ----~~~~~~~~--~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..... ......+.++.||.-+ ..+.+.+-.+++.+
T Consensus 132 ~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 132 IFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKL 175 (232)
T ss_dssp HHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHH
Confidence 11111110 0111247899999866 57777777776543
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG0085|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.8e-07 Score=58.79 Aligned_cols=109 Identities=24% Similarity=0.424 Sum_probs=78.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-C
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCA----------DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-K 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~ 69 (113)
|++||..-++.|-|++.+.-.++|++..+ +..+.++...++..+...|...+.++++..||.|+.+.. .
T Consensus 205 DvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ 284 (359)
T KOG0085|consen 205 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIL 284 (359)
T ss_pred ecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhhhh
Confidence 78999999999999999998888887665 345677778899999999999999999999999986531 1
Q ss_pred H----------------HHHHHHhCCC------ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 70 P----------------HEIQEKLGLT------RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 70 ~----------------~~~~~~~~~~------~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
- .+.+..+.+. .-..+-+.-+.++|.+.++|..+|..+..
T Consensus 285 ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkD 346 (359)
T KOG0085|consen 285 YSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKD 346 (359)
T ss_pred HHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHH
Confidence 1 1112222211 11122344578889999999988876543
|
|
| >KOG0099|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-06 Score=55.93 Aligned_cols=65 Identities=38% Similarity=0.696 Sum_probs=56.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
|++||+.-++.|-+++++.-++|||+.++. +.++.+...+++.+-+++....+.+++..||.|+.
T Consensus 208 DVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDll 282 (379)
T KOG0099|consen 208 DVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 282 (379)
T ss_pred ccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHH
Confidence 799999999999999999999999998873 34677778888888877777889999999999963
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.5e-07 Score=61.40 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=62.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHH-------HHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CC-HH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE-------ARQELHRIINDREMRDAIILIFANKQDLPDA-MK-PH 71 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~-~~ 71 (113)
|+|||..|-.-+-.....||+.++|+|++. ..|+. +.+....++. ..-..+++++||+|+.+= .+ .+
T Consensus 261 DaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~---Lgi~qlivaiNKmD~V~Wsq~RF~ 336 (603)
T KOG0458|consen 261 DAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRS---LGISQLIVAINKMDLVSWSQDRFE 336 (603)
T ss_pred cCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHH---cCcceEEEEeecccccCccHHHHH
Confidence 899998887766667788999999999984 22222 2222222221 134689999999998651 11 22
Q ss_pred HHHHHhC-----CCccCCCCeEEEeccccCCCCHHH
Q psy17510 72 EIQEKLG-----LTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 72 ~~~~~~~-----~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
++...++ ...+....+.+++||+.+|+|+..
T Consensus 337 eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 337 EIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 3333332 122334566799999999999653
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-06 Score=62.68 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=47.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+..|.......+..+|++|+|+|+...-... ....++.+.. .++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 89999999888888899999999999998643222 3455555543 468999999999986
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.5e-06 Score=61.06 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+.+|.......+..+|++++|+|+......+ ....++.... .+.|+++++||+|...
T Consensus 92 DTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~-t~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 92 DTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ-TETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred eCCCccccHHHHHHHHHhcCEEEEEEecCCCCCcc-HHHHHHHHHH----cCCCEEEEEEChhccc
Confidence 89999999988888999999999999997642222 2333333322 3578899999999754
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.9e-06 Score=62.38 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=47.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
|||||..|.......+..+|++|+|+|+...-.. .+...++.+.. .++|+++++||+|..
T Consensus 104 DtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~-~t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 104 DSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcc-cHHHHHHHHHH----CCCCEEEEEECCccc
Confidence 8999999988888889999999999999864222 23445555543 578999999999976
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.2e-06 Score=53.35 Aligned_cols=95 Identities=24% Similarity=0.142 Sum_probs=62.7
Q ss_pred hhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCe
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 87 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 87 (113)
..+.+.-..+.|-+++|+.+.+|+ +.....+++-.+- ..++..+++.||+|+.+...... + .........++
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae----~~gi~pvIvlnK~DL~~~~~~~~--~-~~~~~y~~~gy 142 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE----AGGIEPVIVLNKIDLLDDEEAAV--K-ELLREYEDIGY 142 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH----HcCCcEEEEEEccccCcchHHHH--H-HHHHHHHhCCe
Confidence 344455555677777777777664 5555555555552 25777788899999976433332 1 11122334677
Q ss_pred EEEeccccCCCCHHHHHHHHHhh
Q psy17510 88 YVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 88 ~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+++.+|++++.|+.++.+.+...
T Consensus 143 ~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 143 PVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred eEEEecCcCcccHHHHHHHhcCC
Confidence 89999999999999999887654
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.2e-06 Score=60.78 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=45.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+..|.......+..+|++++|+|+..... ......+..... .++|.++++||+|..
T Consensus 93 DtPG~~df~~~~~~~l~~~D~avlVvda~~g~~-~~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 93 DTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVM-PQTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred cCCCccChHHHHHHHHHhcCEEEEEEECCCCCC-ccHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 899999998888889999999999999876422 223344444433 356889999999975
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-05 Score=54.91 Aligned_cols=110 Identities=21% Similarity=0.103 Sum_probs=62.4
Q ss_pred CCCCccCc-hhh--------HHhhhcCCcEEEEEEECC--ChhhHHHHHHHHHHHHc-----CcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKI-RPL--------WRHYYTGTQGLIFVVDCA--DRDRIDEARQELHRIIN-----DREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~-~~~--------~~~~~~~~~~vi~v~d~~--~~~~~~~~~~~~~~~~~-----~~~~~~~p~ilv~nK~D~ 64 (113)
||+|..+- ..- -+.-...||++++|+|+. ..++.....+.++.... .+...+.|++++.||.|+
T Consensus 322 DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~ 401 (531)
T KOG1191|consen 322 DTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDL 401 (531)
T ss_pred eccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhc
Confidence 78887661 111 133567899999999994 33333332333333311 122345799999999998
Q ss_pred CCCCCH-HHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 65 PDAMKP-HEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 65 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+... ......+.........-...++|+++++|+..+.+.+...
T Consensus 402 ~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~ 448 (531)
T KOG1191|consen 402 VSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNI 448 (531)
T ss_pred cCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHH
Confidence 765321 1100111111111112235569999999999998877654
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-05 Score=52.74 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=62.3
Q ss_pred CCCCccCchhh--HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHH--
Q psy17510 1 DVGGQDKIRPL--WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEK-- 76 (113)
Q Consensus 1 D~~G~~~~~~~--~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-- 76 (113)
||.|||+|.+. +...-+..|-.++++.+++..+. -..+.+--.. ..+.|++++.+|+|+.+....+.+.+.
T Consensus 207 DtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEHLgi~~----a~~lPviVvvTK~D~~~ddr~~~v~~ei~ 281 (527)
T COG5258 207 DTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEHLGIAL----AMELPVIVVVTKIDMVPDDRFQGVVEEIS 281 (527)
T ss_pred ecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHhhhhhh----hhcCCEEEEEEecccCcHHHHHHHHHHHH
Confidence 89999999753 34455678889999988764221 1123332221 257899999999999775433322221
Q ss_pred --hC----CCcc---------------CCC-CeEEEeccccCCCCHHHHHHH
Q psy17510 77 --LG----LTRI---------------RDR-NWYVQPSCATTADGLYEGLTW 106 (113)
Q Consensus 77 --~~----~~~~---------------~~~-~~~~~~~sa~~~~~i~~~~~~ 106 (113)
+. .++. .+. -+|++.+|+-+|.|++-+.+.
T Consensus 282 ~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 282 ALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred HHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 11 0000 012 369999999999998754443
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=50.67 Aligned_cols=87 Identities=6% Similarity=-0.059 Sum_probs=49.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEeCCCCCCCCC-HHHHH----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQDLPDAMK-PHEIQ---- 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~-~~~~~---- 74 (113)
||||.- ..+.. ..+.+|++++|+|.+...... ...++..+.. .+.|. ++++||+|+.+... ..++.
T Consensus 89 DtPg~~--~~~l~-~ak~aDvVllviDa~~~~~~~-~~~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~ 160 (225)
T cd01882 89 ECPNDI--NAMID-IAKVADLVLLLIDASFGFEME-TFEFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLK 160 (225)
T ss_pred eCCchH--HHHHH-HHHhcCEEEEEEecCcCCCHH-HHHHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHH
Confidence 677653 33333 467899999999997543222 2233333322 35675 45999999864221 22222
Q ss_pred HHhCCCccCCCCeEEEeccccCC
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTA 97 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~ 97 (113)
+.+..... .+.+++.+||++.
T Consensus 161 ~~~~~~~~--~~~ki~~iSa~~~ 181 (225)
T cd01882 161 HRFWTEVY--QGAKLFYLSGIVH 181 (225)
T ss_pred HHHHHhhC--CCCcEEEEeeccC
Confidence 22221122 3458999999876
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.6e-05 Score=50.80 Aligned_cols=106 Identities=21% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC-----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK-----PHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-----~~~~~ 74 (113)
|+|||..|-+-+--.-+..|+.|+|+.+++.. .....+.+...++ -++| ++++.||+|+.++.. ..++.
T Consensus 81 DcPGHaDYvKNMItgAaqmDgAILVVsA~dGp-mPqTrEHiLlarq----vGvp~ivvflnK~Dmvdd~ellelVemEvr 155 (394)
T COG0050 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVR 155 (394)
T ss_pred cCCChHHHHHHHhhhHHhcCccEEEEEcCCCC-CCcchhhhhhhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHH
Confidence 89999888665544667789999999988732 1222222222222 4564 678899999987433 22455
Q ss_pred HHhCCCccCCCCeEEEeccccCCC-C-------HHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTAD-G-------LYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~-~-------i~~~~~~l~~~~ 111 (113)
+.++...+..-..|++.-||+..- | |.++.+.+-+++
T Consensus 156 eLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 156 ELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred HHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 555555555667888888875422 1 456666555543
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.7e-05 Score=51.84 Aligned_cols=105 Identities=14% Similarity=0.043 Sum_probs=60.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~ 75 (113)
|+|||...-+..-..-+--|..++|+|+.... +-...--.+.++. -...++|+||+|..++.. .+...+
T Consensus 76 DCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~k 149 (522)
T KOG0461|consen 76 DCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAK 149 (522)
T ss_pred eCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHH
Confidence 78888554443333444458999999997532 1111112233332 245688889998755322 222222
Q ss_pred HhCC---CccCCCCeEEEeccccCC----CCHHHHHHHHHhhc
Q psy17510 76 KLGL---TRIRDRNWYVQPSCATTA----DGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~---~~~~~~~~~~~~~sa~~~----~~i~~~~~~l~~~~ 111 (113)
+... ..--....|++++||+.| +++.++.+.|.+.+
T Consensus 150 k~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 150 KVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred HHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 2211 111124578999999999 77888887776553
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.3e-05 Score=54.33 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=53.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---CCHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~ 77 (113)
|||||=.|..-....+.-+|+.++|+|+...- -..+...+++..+ .++|.++++||+|.... ....++...+
T Consensus 82 DTPGHVDFt~EV~rslrvlDgavvVvdaveGV-~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l 156 (697)
T COG0480 82 DTPGHVDFTIEVERSLRVLDGAVVVVDAVEGV-EPQTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERL 156 (697)
T ss_pred CCCCccccHHHHHHHHHhhcceEEEEECCCCe-eecHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHh
Confidence 89999999999999999999999999998632 1223445555544 57999999999997653 2344454444
Q ss_pred C
Q psy17510 78 G 78 (113)
Q Consensus 78 ~ 78 (113)
+
T Consensus 157 ~ 157 (697)
T COG0480 157 G 157 (697)
T ss_pred C
Confidence 4
|
|
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.6e-05 Score=52.07 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=68.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH---HHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH---EIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~---~~~~~~ 77 (113)
|+|||+-+-+.+..-..--|+.++++..+.+..-....+.+..+-. ++=+-++++-||+|+....... +...+|
T Consensus 131 DCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei---M~LkhiiilQNKiDli~e~~A~eq~e~I~kF 207 (466)
T KOG0466|consen 131 DCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI---MKLKHIIILQNKIDLIKESQALEQHEQIQKF 207 (466)
T ss_pred cCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH---hhhceEEEEechhhhhhHHHHHHHHHHHHHH
Confidence 7888876555444343444888888887764443344444443321 1236789999999986543211 122222
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
-... ...+.|++.+||.-..+++-+.+.++..+.
T Consensus 208 i~~t-~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 208 IQGT-VAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred Hhcc-ccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 2211 234668999999999999999999998765
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00014 Score=40.92 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=28.4
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
.+..+|++++|+|..++.. +...++++.+. .++|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPIT-EDDKNILRELK-----NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSH-HHHHHHHHHHH-----TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-----cCCCEEEEEcC
Confidence 4489999999999776311 22234444441 57899999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.9e-05 Score=48.13 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=54.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCCCc--cCCCCe--EEEe
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGLTR--IRDRNW--YVQP 91 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~--~~~~ 91 (113)
+-+|.+++|.-+.-.+..+....=+-++ -=++|+||.|..+.. ...++...+.... ....+| +++.
T Consensus 163 ~~aDt~~~v~~pg~GD~~Q~iK~GimEi---------aDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~ 233 (323)
T COG1703 163 NMADTFLVVMIPGAGDDLQGIKAGIMEI---------ADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVT 233 (323)
T ss_pred hhcceEEEEecCCCCcHHHHHHhhhhhh---------hheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeE
Confidence 4578888877655443344333222222 238999999965532 2345555554432 344555 7999
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q psy17510 92 SCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 92 ~sa~~~~~i~~~~~~l~~~~ 111 (113)
+||.+++|++++.+.+....
T Consensus 234 t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 234 TSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred eeeccCCCHHHHHHHHHHHH
Confidence 99999999999999887643
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.5e-05 Score=50.68 Aligned_cols=44 Identities=9% Similarity=0.113 Sum_probs=29.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
++|+++|+++.+.........+.++.+. .++|+++|+||+|+..
T Consensus 114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 5788999998875222222244555553 2589999999999854
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00055 Score=43.61 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=36.1
Q ss_pred hhHHhhhcC-CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 10 PLWRHYYTG-TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 10 ~~~~~~~~~-~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
.+...|++. .+.+++|+|+...-.-.+...+.+.+.. .++|+++|+||.|..+.
T Consensus 153 ~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~----~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 153 DMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP----QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH----cCCcEEEEEECCCCCCc
Confidence 356678884 4688999988653333333444455532 57899999999998653
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=48.89 Aligned_cols=91 Identities=25% Similarity=0.196 Sum_probs=59.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-----PHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-----~~~~~~ 75 (113)
|+|||..|-+-+----..-|+.|+|+.+++.. .....+.+....|. .=..+++.+||.|+.++.. .-++.+
T Consensus 123 DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RE 198 (449)
T KOG0460|consen 123 DCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRE 198 (449)
T ss_pred CCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHH
Confidence 88999877654444555669999999998742 33344444444432 2246788999999875322 124455
Q ss_pred HhCCCccCCCCeEEEecccc
Q psy17510 76 KLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~ 95 (113)
.++...+++-.+|++.-||+
T Consensus 199 lLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 199 LLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHcCCCCCCCCeeecchh
Confidence 55555566777888888764
|
|
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.5e-05 Score=54.09 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=47.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
|||||=.|..-....+.-+|++++|+|+...-.+. ..++++...+ ...|+++++||.|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln-tEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN-TERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceee-HHHHHHHHHh----ccCcEEEEEehhHH
Confidence 89999999888888889999999999998654444 3445555554 46899999999994
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00028 Score=49.65 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=59.9
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-----CCHHHHHHHhCCCccCCCCeEEEe
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-----MKPHEIQEKLGLTRIRDRNWYVQP 91 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 91 (113)
..||+++++||.+++.+++.....++..... .+.|+++|++|+|+.+. ....+++..++++.- . .
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P------~-~ 563 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPP------I-H 563 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCC------e-e
Confidence 5789999999999999999888777766443 67999999999998653 335677777775431 2 4
Q ss_pred ccccCCCCHHHHHHHHHhh
Q psy17510 92 SCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 92 ~sa~~~~~i~~~~~~l~~~ 110 (113)
.|.++... ..+|..|+..
T Consensus 564 ~S~~~~~s-~~lf~kL~~~ 581 (625)
T KOG1707|consen 564 ISSKTLSS-NELFIKLATM 581 (625)
T ss_pred eccCCCCC-chHHHHHHHh
Confidence 44443222 6788877754
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.6e-05 Score=50.76 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=51.3
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCCCccCCCCe--EEEec
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNW--YVQPS 92 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~ 92 (113)
..-+|.+++|..+.-.+..+....=+-+ +.=++|+||.|.+.... ..++...+....-....| |++.|
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~t 210 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAIKAGIME---------IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKT 210 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEE
T ss_pred HHhcCeEEEEecCCCccHHHHHhhhhhh---------hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEE
Confidence 4568999999987654333322222222 23489999999654322 334444443222223344 89999
Q ss_pred cccCCCCHHHHHHHHHhh
Q psy17510 93 CATTADGLYEGLTWLTSN 110 (113)
Q Consensus 93 sa~~~~~i~~~~~~l~~~ 110 (113)
||.++.|++++.+.+.++
T Consensus 211 sA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 211 SALEGEGIDELWEAIDEH 228 (266)
T ss_dssp BTTTTBSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 999999999999988764
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00037 Score=47.48 Aligned_cols=54 Identities=26% Similarity=0.242 Sum_probs=34.7
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHH-HHHHHHhhc
Q psy17510 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYE-GLTWLTSNH 111 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~-~~~~l~~~~ 111 (113)
..+|+++|+||.|..... ..+.+.... ....++.+||+.+.++.. +.+.+.+++
T Consensus 216 t~KPvI~VlNK~D~~~~~--~~l~~i~~~-----~~~~vvpISA~~e~~l~~~l~~~i~~~l 270 (396)
T PRK09602 216 ISKPMVIAANKADLPPAE--ENIERLKEE-----KYYIVVPTSAEAELALRRAAKAGLIDYI 270 (396)
T ss_pred cCCCEEEEEEchhcccch--HHHHHHHhc-----CCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence 358999999999975311 112211111 223588999999999888 666665543
|
|
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.8e-05 Score=52.28 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=53.6
Q ss_pred cCchhhHHhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccC
Q psy17510 6 DKIRPLWRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR 83 (113)
Q Consensus 6 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 83 (113)
+.++.+|+ .+..+|+|+.++|+.++--|. +...++.+. ...+-.++++||.||.+........+.|..
T Consensus 163 E~WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~-----d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~---- 232 (562)
T KOG1424|consen 163 EIWRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEV-----DPSKANVLLVNKADLLPPEQRVAWAEYFRQ---- 232 (562)
T ss_pred HHHHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhcc-----ccccceEEEEehhhcCCHHHHHHHHHHHHh----
Confidence 45677887 789999999999999864322 223333333 134678999999999775444444444443
Q ss_pred CCCeEEEeccccC
Q psy17510 84 DRNWYVQPSCATT 96 (113)
Q Consensus 84 ~~~~~~~~~sa~~ 96 (113)
.+++++..||..
T Consensus 233 -~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 233 -NNIPVVFFSALA 244 (562)
T ss_pred -cCceEEEEeccc
Confidence 346777888765
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0001 Score=43.99 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=39.1
Q ss_pred CCCCcc----CchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCC
Q psy17510 1 DVGGQD----KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62 (113)
Q Consensus 1 D~~G~~----~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 62 (113)
||||.. ....++..|+..+|++|+|.+++...+-.+...+.+.... ....+++|.||.
T Consensus 107 DtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 107 DTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp EEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred eCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence 677753 2336788899999999999999875544444444444432 344588999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=97.68 E-value=6e-05 Score=46.22 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=50.0
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHc-CcCCCCCeEEEEEeCCCCCCCCCH--HHHHHHhCCCccCCCCeEEEecccc
Q psy17510 19 TQGLIFVVDCADRDRIDEARQELHRIIN-DREMRDAIILIFANKQDLPDAMKP--HEIQEKLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~sa~ 95 (113)
.+.-|+|+|++..+-. -.+ .|.... -=++|+||.|+.+.... +...+... . -+...+++++|++
T Consensus 118 d~~~v~VidvteGe~~---------P~K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~--~-~np~~~ii~~n~k 184 (202)
T COG0378 118 DHLRVVVIDVTEGEDI---------PRKGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAK--E-VNPEAPIIFTNLK 184 (202)
T ss_pred hceEEEEEECCCCCCC---------cccCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHH--H-hCCCCCEEEEeCC
Confidence 3477888888753110 001 122222 34889999999775432 22222111 0 1356789999999
Q ss_pred CCCCHHHHHHHHHhhc
Q psy17510 96 TADGLYEGLTWLTSNH 111 (113)
Q Consensus 96 ~~~~i~~~~~~l~~~~ 111 (113)
+|+|++++++|+....
T Consensus 185 tg~G~~~~~~~i~~~~ 200 (202)
T COG0378 185 TGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCcCHHHHHHHHHhhc
Confidence 9999999999998764
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=97.64 E-value=7.5e-05 Score=42.08 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=49.1
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEec
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 92 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (113)
..+++.++.++.|++.....+++.. |...+.... ..+.|.++++||.|+.+... +.+.... +++++
T Consensus 41 ~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~---~~~~~~~--------~~~~~ 106 (124)
T smart00010 41 PTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQ---VATEEGL--------EFAET 106 (124)
T ss_pred ccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCc---CCHHHHH--------HHHHH
Confidence 4467788999999999988777644 665554332 24578899999999743211 1111111 24478
Q ss_pred cccCCCCHH
Q psy17510 93 CATTADGLY 101 (113)
Q Consensus 93 sa~~~~~i~ 101 (113)
|++++.|+.
T Consensus 107 s~~~~~~~~ 115 (124)
T smart00010 107 SAKTPEEGE 115 (124)
T ss_pred hCCCcchhh
Confidence 999998874
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.1e-05 Score=48.51 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=39.5
Q ss_pred CCeEEEEEeCCCCCCCC--CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 52 DAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+-++++||+|+.+.. ..+.+.+.... .....+++.+||++++|++++.+||..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999996532 23333333221 1245679999999999999999999864
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.57 E-value=7.6e-05 Score=45.18 Aligned_cols=44 Identities=18% Similarity=0.133 Sum_probs=28.1
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHH-HcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 20 QGLIFVVDCADRDRIDEARQELHRI-INDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
|++++|+|+..+.+... ..+.+.+ ... .++|+++++||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~---~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAG---GNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhcc---CCCCEEEEEehhhcCCH
Confidence 78999999987532111 1222221 221 46899999999999653
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=42.80 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=68.9
Q ss_pred CCCCccC-------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-----
Q psy17510 1 DVGGQDK-------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM----- 68 (113)
Q Consensus 1 D~~G~~~-------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----- 68 (113)
||||.+. ++.....++...|.++.+++..++.---+ ..+++.+... .-+.|+++++|..|+..+.
T Consensus 93 DtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~--~~~~~~i~~VtQ~D~a~p~~~W~~ 169 (296)
T COG3596 93 DTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIIL--GLDKRVLFVVTQADRAEPGREWDS 169 (296)
T ss_pred cCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHh--ccCceeEEEEehhhhhcccccccc
Confidence 7888654 67778889999999999999987632111 3344444332 2458999999999964431
Q ss_pred -----C--HHHHHHHhCC---CccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 69 -----K--PHEIQEKLGL---TRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 69 -----~--~~~~~~~~~~---~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+ .++..+.... ..+ ..--|++..+...+-|++.+...++..+.
T Consensus 170 ~~~~p~~a~~qfi~~k~~~~~~~~-q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 170 AGHQPSPAIKQFIEEKAEALGRLF-QEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHH-hhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1 1111111100 011 11236788888999999999998887654
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00073 Score=41.55 Aligned_cols=95 Identities=11% Similarity=0.039 Sum_probs=49.7
Q ss_pred hhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC---CCccCCCCeEEE
Q psy17510 15 YYTGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG---LTRIRDRNWYVQ 90 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 90 (113)
...+.|++++|++..+. .......+++...... ..-.+++++.|+.|........++..... .......+-.++
T Consensus 80 ~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~ 157 (196)
T cd01852 80 SAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV 157 (196)
T ss_pred cCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence 34678999999998762 1223334455544321 12258899999999755433332221111 000001111122
Q ss_pred ec-----cccCCCCHHHHHHHHHhhc
Q psy17510 91 PS-----CATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 91 ~~-----sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ++..+.++.++++.+.+.+
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 22 2456677888888776543
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00042 Score=46.01 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=55.2
Q ss_pred CchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCC
Q psy17510 7 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRN 86 (113)
Q Consensus 7 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 86 (113)
++...........|+|+-|+|+.++.+-. ...+..+. .++|.++++||.|+.+........+.+... .+
T Consensus 23 k~~~~~~~~~~~~d~vvevvDar~P~~s~--~~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~----~~ 91 (322)
T COG1161 23 KAKRQLKEVLKSVDVVVEVVDARDPLGTR--NPELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKKE----EG 91 (322)
T ss_pred HHHHHHHHhcccCCEEEEEEecccccccc--CccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHhc----CC
Confidence 45556667889999999999999874321 22334443 346669999999997744444444444322 13
Q ss_pred eEEEeccccCCCCHHHHH
Q psy17510 87 WYVQPSCATTADGLYEGL 104 (113)
Q Consensus 87 ~~~~~~sa~~~~~i~~~~ 104 (113)
...+.+++..+.+...+.
T Consensus 92 ~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 92 IKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred CccEEEEeecccCccchH
Confidence 334577777777655555
|
|
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0021 Score=41.83 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=52.8
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-------CHHHHHHHhCC---CccC--
Q psy17510 19 TQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-------KPHEIQEKLGL---TRIR-- 83 (113)
Q Consensus 19 ~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-------~~~~~~~~~~~---~~~~-- 83 (113)
.-+++|++|.... .+|=..+-+-..++.. .+.|++++.||+|+.+.. +.+.+.+++.. .+..
T Consensus 148 ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l 224 (366)
T KOG1532|consen 148 PTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNL 224 (366)
T ss_pred CeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHh
Confidence 3577888887642 2343333333444432 578999999999986631 11122222220 0110
Q ss_pred --C---------CCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 84 --D---------RNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 84 --~---------~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
. ..+...-+|+.+|.|.+++|..+-.
T Consensus 225 ~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~ 261 (366)
T KOG1532|consen 225 TRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDE 261 (366)
T ss_pred hhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHH
Confidence 0 2456789999999999999987654
|
|
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=46.83 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=44.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|||||-.|.--.+..+.--|+.++|+|.... -...+....++..+ -++|.+..+||+|..+
T Consensus 110 DTPGHvDFT~EVeRALrVlDGaVlvl~aV~G-VqsQt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 110 DTPGHVDFTFEVERALRVLDGAVLVLDAVAG-VESQTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred cCCCceeEEEEehhhhhhccCeEEEEEcccc-eehhhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 8999999988888888888999999988643 12222333444433 4799999999999544
|
|
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0029 Score=42.92 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=59.0
Q ss_pred CCCCccCchhhHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~ 74 (113)
|.+|+.+|.+..-+.+. ..|..++|+.+...-... ..+.+..+.- -++|++++++|+|+.+... .+++.
T Consensus 255 DLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~~tv~~l~ 329 (591)
T KOG1143|consen 255 DLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMDLVDRQGLKKTVKDLS 329 (591)
T ss_pred ecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeeccccchhHHHHHHHHH
Confidence 67899888775443222 246667777665431111 1233333322 4799999999999876422 22333
Q ss_pred HHhCC---------------------CccCCCCeEEEeccccCCCCHHHHHHH
Q psy17510 75 EKLGL---------------------TRIRDRNWYVQPSCATTADGLYEGLTW 106 (113)
Q Consensus 75 ~~~~~---------------------~~~~~~~~~~~~~sa~~~~~i~~~~~~ 106 (113)
..+.. +....+-+|+|-+|..+|+|++-+...
T Consensus 330 nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 330 NLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 22211 112234568999999999998765543
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0016 Score=43.17 Aligned_cols=52 Identities=21% Similarity=0.065 Sum_probs=38.1
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.-+|.+.+.||+|+.+......+.+.. ..+.+||.++.|++++.+.+-+.+.
T Consensus 238 vY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 238 VYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 358999999999987622222222221 3779999999999999998877654
|
|
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0027 Score=43.09 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=41.0
Q ss_pred hhHHhhhcCCcEEEEEEECCChhh--HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q psy17510 10 PLWRHYYTGTQGLIFVVDCADRDR--IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL 77 (113)
Q Consensus 10 ~~~~~~~~~~~~vi~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 77 (113)
+-.+..+..+|+||.|+|+.+|.+ -.+...++... ..++..|+|.||+|+.+....++....+
T Consensus 138 ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-----~gnKkLILVLNK~DLVPrEv~e~Wl~YL 202 (435)
T KOG2484|consen 138 KEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-----HGNKKLILVLNKIDLVPREVVEKWLVYL 202 (435)
T ss_pred HHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-----cCCceEEEEeehhccCCHHHHHHHHHHH
Confidence 334556778999999999998743 22223333222 2458999999999998755444443333
|
|
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0023 Score=43.48 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=52.9
Q ss_pred CCCCccCchhhHHhhhcC--CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHH---
Q psy17510 1 DVGGQDKIRPLWRHYYTG--TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE--- 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~--~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~--- 75 (113)
|.+|+|+|.+....-+.+ .|-..+++-.+-. -..-..+.+...+ .-.+|+++|.+|+|+-++.-.++-.+
T Consensus 225 DLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLAL----aL~VPVfvVVTKIDMCPANiLqEtmKll~ 299 (641)
T KOG0463|consen 225 DLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLAL----ALHVPVFVVVTKIDMCPANILQETMKLLT 299 (641)
T ss_pred eccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhh----hhcCcEEEEEEeeccCcHHHHHHHHHHHH
Confidence 567777776643322221 2444555544321 1111122222222 24689999999999865422222111
Q ss_pred -HhC---------------------CCccCCCCeEEEeccccCCCCHHHHHHH
Q psy17510 76 -KLG---------------------LTRIRDRNWYVQPSCATTADGLYEGLTW 106 (113)
Q Consensus 76 -~~~---------------------~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 106 (113)
.+. .++-..+-||+|++|..+|+++.-+...
T Consensus 300 rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 300 RLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 111 1112234589999999999998765543
|
|
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.01 Score=37.82 Aligned_cols=65 Identities=25% Similarity=0.405 Sum_probs=43.8
Q ss_pred CCCCccCc-hh----hHHhhhcCCcEEEEEEECCChhhHHHHH---HHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKI-RP----LWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~-~~----~~~~~~~~~~~vi~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
|++||+.+ .+ ...+-+.+.+++|+|||++..+-..+.. .-++.+.+. ++...++....|+|+...
T Consensus 59 DcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 59 DCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred ccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhccc
Confidence 78898733 22 3456788999999999998654333322 223444443 467789999999998764
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.032 Score=38.72 Aligned_cols=90 Identities=10% Similarity=0.075 Sum_probs=52.3
Q ss_pred Hhhhc-CCcEEEEEE-ECCC----hh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCC
Q psy17510 13 RHYYT-GTQGLIFVV-DCAD----RD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 85 (113)
Q Consensus 13 ~~~~~-~~~~vi~v~-d~~~----~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 85 (113)
+..+. +++..|+|. |.+- +. -.+...+++.++.+ .++|++++.||+|-.... ..++.+.+... .
T Consensus 138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e-t~~l~~~l~ek----y 208 (492)
T TIGR02836 138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPE-TEALRQELEEK----Y 208 (492)
T ss_pred HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCch-hHHHHHHHHHH----h
Confidence 34555 889999888 6641 12 23334577777754 589999999999932111 22222222111 1
Q ss_pred CeEEEeccc--cCCCCHHHHHHHHHhhc
Q psy17510 86 NWYVQPSCA--TTADGLYEGLTWLTSNH 111 (113)
Q Consensus 86 ~~~~~~~sa--~~~~~i~~~~~~l~~~~ 111 (113)
+++++.+|+ .+...+..+++.+.-.+
T Consensus 209 ~vpvl~v~c~~l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 209 DVPVLAMDVESMRESDILSVLEEVLYEF 236 (492)
T ss_pred CCceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence 234555555 55567777777766544
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.031 Score=33.74 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=40.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|||+... ......+..+|.+++++.++. .+......+++.+.+ .+.|+.+++||.|...
T Consensus 99 Dtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 99 DGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH----FGIPVGVVINKYDLND 157 (179)
T ss_pred ECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCc
Confidence 6775532 233446688999999998873 456666666666543 3567899999999654
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.015 Score=39.61 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=44.6
Q ss_pred CCCCccCchhh-----------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKIRPL-----------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~~~~-----------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||...-+++ .+-+..++|.+|++||+-.-+--++..+.+..+.. ..=.+-+|.||.|..+
T Consensus 153 dtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADqVd--- 225 (532)
T KOG1954|consen 153 DTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQVD--- 225 (532)
T ss_pred ccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccccC---
Confidence 67775444333 33467799999999998643333344455555543 2346778999999765
Q ss_pred HHHHHHHhC
Q psy17510 70 PHEIQEKLG 78 (113)
Q Consensus 70 ~~~~~~~~~ 78 (113)
.+++...++
T Consensus 226 tqqLmRVyG 234 (532)
T KOG1954|consen 226 TQQLMRVYG 234 (532)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >KOG0448|consensus | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.04 Score=40.10 Aligned_cols=61 Identities=20% Similarity=0.355 Sum_probs=41.2
Q ss_pred CCCCcc---CchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQD---KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~---~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|.||.. ...+....+...+|++|||....+.-+.. ..+++....+ .+..++++.||+|...
T Consensus 212 DsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~----~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 212 DSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSE----EKPNIFILNNKWDASA 275 (749)
T ss_pred cCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhc----cCCcEEEEechhhhhc
Confidence 566743 44556678889999999999887653333 2456666643 2445788888999754
|
|
| >KOG0705|consensus | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0059 Score=43.30 Aligned_cols=95 Identities=11% Similarity=0.218 Sum_probs=62.8
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHhCCCccCCCCeEE
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKLGLTRIRDRNWYV 89 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~ 89 (113)
..|....|++||||...+..+++....+...+.........|+++++++.-..-..+ ...-...+. .....+.+
T Consensus 90 aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~---~~~krcsy 166 (749)
T KOG0705|consen 90 AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLS---AQMKRCSY 166 (749)
T ss_pred hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHH---HhcCccce
Confidence 457778999999999998888888776666554433345678888887653211111 111111111 12356678
Q ss_pred EeccccCCCCHHHHHHHHHhh
Q psy17510 90 QPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 90 ~~~sa~~~~~i~~~~~~l~~~ 110 (113)
|++++.+|.++..+|+.+...
T Consensus 167 ~et~atyGlnv~rvf~~~~~k 187 (749)
T KOG0705|consen 167 YETCATYGLNVERVFQEVAQK 187 (749)
T ss_pred eecchhhhhhHHHHHHHHHHH
Confidence 999999999999999877654
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.015 Score=42.70 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=43.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
|+|||=.|.........=+|+.++++|+...- -..+...+++... .+..+++|+||+|
T Consensus 78 dspghvdf~sevssas~l~d~alvlvdvvegv-~~qt~~vlrq~~~----~~~~~~lvinkid 135 (887)
T KOG0467|consen 78 DSPGHVDFSSEVSSASRLSDGALVLVDVVEGV-CSQTYAVLRQAWI----EGLKPILVINKID 135 (887)
T ss_pred cCCCccchhhhhhhhhhhcCCcEEEEeecccc-chhHHHHHHHHHH----ccCceEEEEehhh
Confidence 89999999998888888899999999997531 1223444555533 4567799999999
|
|
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.009 Score=39.94 Aligned_cols=60 Identities=5% Similarity=-0.044 Sum_probs=38.3
Q ss_pred CCeEEEEEeCCCCCCC----CC--HH--HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 52 DAIILIFANKQDLPDA----MK--PH--EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~----~~--~~--~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++|+++|++|+|.... .. .+ ++.+...-.+.-+-+..++.+|++...|++-+.+.|+...
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 6899999999997331 11 11 1111111112223455689999999999999998887653
|
|
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.0042 Score=42.79 Aligned_cols=74 Identities=22% Similarity=0.144 Sum_probs=51.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---CCHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~ 77 (113)
||||+-.|+--.+.++.--|+++.|||.+..-. ......+++.. ..++|-...+||+|...+ .....+.+++
T Consensus 108 dtpghvdf~leverclrvldgavav~dasagve-~qtltvwrqad----k~~ip~~~finkmdk~~anfe~avdsi~ekl 182 (753)
T KOG0464|consen 108 DTPGHVDFRLEVERCLRVLDGAVAVFDASAGVE-AQTLTVWRQAD----KFKIPAHCFINKMDKLAANFENAVDSIEEKL 182 (753)
T ss_pred cCCCcceEEEEHHHHHHHhcCeEEEEeccCCcc-cceeeeehhcc----ccCCchhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 899999999989999999999999999985311 11122223332 257899999999997553 2345566665
Q ss_pred CC
Q psy17510 78 GL 79 (113)
Q Consensus 78 ~~ 79 (113)
+.
T Consensus 183 ~a 184 (753)
T KOG0464|consen 183 GA 184 (753)
T ss_pred CC
Confidence 53
|
|
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.013 Score=40.15 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=57.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh---hHHH---HHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CH---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD---RIDE---ARQELHRIINDREMRDAIILIFANKQDLPDAM-KP--- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~---~~~~---~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~--- 70 (113)
|.|||..|-.-+-.-..+||.-++|+.+.... .|+. ......... ...-.-.++++||+|.+... +.
T Consensus 163 DApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak---t~gv~~lVv~vNKMddPtvnWs~eRy 239 (501)
T KOG0459|consen 163 DAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK---TAGVKHLIVLINKMDDPTVNWSNERY 239 (501)
T ss_pred ccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH---hhccceEEEEEEeccCCccCcchhhH
Confidence 78899888766666777899999998775311 1111 111111111 11335678999999976531 11
Q ss_pred HHHHHHhC-----CCccCCCCeEEEeccccCCCCHHHHH
Q psy17510 71 HEIQEKLG-----LTRIRDRNWYVQPSCATTADGLYEGL 104 (113)
Q Consensus 71 ~~~~~~~~-----~~~~~~~~~~~~~~sa~~~~~i~~~~ 104 (113)
++..++.. ..+.......++.+|..+|.++.+-.
T Consensus 240 ~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 240 EECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred HHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 12212111 11112245678999999999887643
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.048 Score=34.84 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=30.4
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCC-CeEEEEEeCCCCC
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD-AIILIFANKQDLP 65 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~D~~ 65 (113)
..+++|.+|.|+|++- .++.-..+ +.++... -+ +++.+|.||.|-.
T Consensus 152 ~~~~vD~vivVvDpS~-~sl~taer-i~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPSY-KSLRTAER-IKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHH---hCCceEEEEEeeccch
Confidence 4568999999999984 33333322 2333222 24 7999999999953
|
|
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.033 Score=36.89 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=41.0
Q ss_pred HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q psy17510 12 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG 78 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 78 (113)
++.-++..|.+|=|=|+.-|-+ .-...+..+. ..+|-++|.||+|+.+......+.+.+.
T Consensus 40 i~~~l~~~D~iiEvrDaRiPLs--srn~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~~~ 99 (335)
T KOG2485|consen 40 IQNRLPLVDCIIEVRDARIPLS--SRNELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQYLE 99 (335)
T ss_pred HHhhcccccEEEEeeccccCCc--cccHHHHHhc-----CCCceEEEEecccccCchhhhHHHHHHH
Confidence 3456778899999999986632 2223334442 3689999999999988655555555554
|
|
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.13 Score=35.50 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=47.7
Q ss_pred hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecc
Q psy17510 15 YYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
.+..+|++|-|+|+.+|. +.. ..++..++. ..+.+-++.|.||+||.+.--.......++..+ ..--|..|
T Consensus 210 ViDSSDVvvqVlDARDPmGTrc---~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lSkey----PTiAfHAs 281 (572)
T KOG2423|consen 210 VIDSSDVVVQVLDARDPMGTRC---KHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEY----PTIAFHAS 281 (572)
T ss_pred hhcccceeEEeeeccCCccccc---HHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHhhhC----cceeeehh
Confidence 566899999999999874 222 223333322 125677899999999977433333333333211 01123444
Q ss_pred ccCCCCHHHHHHHHH
Q psy17510 94 ATTADGLYEGLTWLT 108 (113)
Q Consensus 94 a~~~~~i~~~~~~l~ 108 (113)
..+..|-..+++.|.
T Consensus 282 i~nsfGKgalI~llR 296 (572)
T KOG2423|consen 282 INNSFGKGALIQLLR 296 (572)
T ss_pred hcCccchhHHHHHHH
Confidence 455556555554443
|
|
| >COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.17 Score=32.98 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=44.0
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
..+.++|.+|+|.-++ +..+.+....++.+.. .++|..+|+||.+.... ...++++..+..
T Consensus 181 ~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~----f~ip~~iViNr~~~g~s-~ie~~~~e~gi~ 241 (284)
T COG1149 181 ASLKGADLAILVTEPT-PFGLHDLKRALELVEH----FGIPTGIVINRYNLGDS-EIEEYCEEEGIP 241 (284)
T ss_pred HhhccCCEEEEEecCC-ccchhHHHHHHHHHHH----hCCceEEEEecCCCCch-HHHHHHHHcCCC
Confidence 3677899999999877 4567777666666643 58999999999965433 466666666544
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.25 Score=27.35 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=35.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 61 (113)
|+|+... ......+..+|.++++++++ ..++.....+++.+.+........+.+++|+
T Consensus 49 Dtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 49 DLGRSLD--EVSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred eCCCCcC--HHHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6666533 23344678899999999876 4466666666666544321113466777775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.22 Score=28.97 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=38.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
|+|+. ........+..+|.++++.+++ ..+.......++.+.+. ....++.++.|+.+.
T Consensus 51 D~p~~--~~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~ 109 (139)
T cd02038 51 DTGAG--ISDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQ--LRVLNFRVVVNRAES 109 (139)
T ss_pred ECCCC--CCHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHh--cCCCCEEEEEeCCCC
Confidence 56653 2333455788999999999886 34555555555555332 134577899999974
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.6 Score=31.83 Aligned_cols=72 Identities=18% Similarity=0.370 Sum_probs=54.1
Q ss_pred hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCcc
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI 82 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 82 (113)
......++..+|-+++|++.+ -.++....+++..+.+.+ ....+..++.||...+...+.+++.+.++....
T Consensus 230 ~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r-~~~~~p~lv~n~~~~~~~~~~~dl~~~~~i~~~ 301 (366)
T COG4963 230 TDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLR-PNDPKPILVLNRVGVPKRPEPSDLEEILGIESL 301 (366)
T ss_pred chHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhC-CCCCCceEEeeecCCCCCCCHHHHHHHhCCchh
Confidence 345567899999999999887 347777888888886653 356778899999997665566778777765543
|
|
| >KOG0447|consensus | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.55 Score=34.04 Aligned_cols=71 Identities=14% Similarity=0.280 Sum_probs=43.7
Q ss_pred hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhCCCcc
Q psy17510 9 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRI 82 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~ 82 (113)
..+..+|+.+.+++|+|+--.. .+.....+..+.......+...++|.+|.|+.+. .++..+.+.+.-..+
T Consensus 439 ~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLF 511 (980)
T KOG0447|consen 439 FSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLF 511 (980)
T ss_pred HHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCcc
Confidence 4567889999999999994322 2222222223322223467889999999999654 345556555543333
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.36 Score=32.22 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=34.6
Q ss_pred CCCCccCchhhHH-------hhh--cCCcEEEEEEECCCh--hhH-HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWR-------HYY--TGTQGLIFVVDCADR--DRI-DEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~-------~~~--~~~~~vi~v~d~~~~--~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||........+ .++ ...|+++||...+.. ... ....+.+....... --.+.+++.|+.|..
T Consensus 92 DTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 92 DTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFS 166 (313)
T ss_pred ECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccC
Confidence 8999876533221 122 158999999655422 111 22233333333211 124789999999965
|
|
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.013 Score=38.32 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=50.9
Q ss_pred CchhhHHhhhcCCc---EEEEEEECCCh--hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC------HHHHHH
Q psy17510 7 KIRPLWRHYYTGTQ---GLIFVVDCADR--DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK------PHEIQE 75 (113)
Q Consensus 7 ~~~~~~~~~~~~~~---~vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~~~~~~ 75 (113)
.+.++...|+..-+ -+++.+|.+-+ ..-....+|+.+ .++|+.+|.||+|...... ...+..
T Consensus 205 d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~ 277 (320)
T KOG2486|consen 205 DWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKI 277 (320)
T ss_pred hHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-------cCCCeEEeeehhhhhhhccccccCcccccee
Confidence 44555566655443 34455566542 222333334333 4799999999999754322 000100
Q ss_pred Hh-CCC-ccCCCCeEEEeccccCCCCHHHHHHHHHh
Q psy17510 76 KL-GLT-RIRDRNWYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 76 ~~-~~~-~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
-+ .+. .......|++.+|+.++.|++.++-.+.+
T Consensus 278 ~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 278 NFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 00 000 00112345778999999999887655543
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.14 Score=30.51 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=23.1
Q ss_pred CCcEEEEEEECCChhhHHHHHH-HHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQ-ELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
..+.+++++|+.....+-.... +..++ .. .. +++.||+|+
T Consensus 118 ~~d~vv~vvDa~~~~~~~~~~~~~~~Qi-~~-----ad-~ivlnk~dl 158 (158)
T cd03112 118 LLDGVITLVDAKHANQHLDQQTEAQSQI-AF-----AD-RILLNKTDL 158 (158)
T ss_pred eeccEEEEEEhhHhHHHhhccHHHHHHH-HH-----CC-EEEEecccC
Confidence 4789999999865332211122 23333 22 12 679999985
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.055 Score=38.01 Aligned_cols=60 Identities=8% Similarity=-0.006 Sum_probs=36.4
Q ss_pred CCeEEEEEeCCCCCCC----CC--HH--HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 52 DAIILIFANKQDLPDA----MK--PH--EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~----~~--~~--~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++|++||++|+|.... .. .. ++...+--.+.-..+..++.||++...+++.++..|...+
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 4799999999996321 11 01 1222111111112455688899999999988887776543
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.14 Score=34.41 Aligned_cols=81 Identities=21% Similarity=0.163 Sum_probs=48.7
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe----EEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEE
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI----ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 90 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (113)
....+|.++=|.|.+.|.........+..+.+. ..+..| ++=|-||+|..+.....+ ... .+
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~E-------~n~------~v 319 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEEE-------KNL------DV 319 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCccc-------cCC------cc
Confidence 456899999999999886554444444433322 112233 344677777644222110 110 34
Q ss_pred eccccCCCCHHHHHHHHHh
Q psy17510 91 PSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 91 ~~sa~~~~~i~~~~~~l~~ 109 (113)
.+||++|.|.+++.+.+-.
T Consensus 320 ~isaltgdgl~el~~a~~~ 338 (410)
T KOG0410|consen 320 GISALTGDGLEELLKAEET 338 (410)
T ss_pred ccccccCccHHHHHHHHHH
Confidence 7899999999998886643
|
|
| >PF14331 ImcF-related_N: ImcF-related N-terminal domain | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.4 Score=31.22 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=29.6
Q ss_pred CCcEEEEEEECCC-----hh--hHHHH----HHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCAD-----RD--RIDEA----RQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~-----~~--~~~~~----~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
.-+|||+++|+.+ .. .+... ..-+.++.+ ......||.+++||+|+.+
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~-~lg~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQR-TLGVRLPVYVVFTKCDLLP 83 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHH-HhCCCCCeEeeeECCCccc
Confidence 3599999999863 11 11221 223333332 2235789999999999865
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.54 Score=31.58 Aligned_cols=67 Identities=22% Similarity=0.232 Sum_probs=37.2
Q ss_pred CcEEEEEEECCChhh-HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccc
Q psy17510 19 TQGLIFVVDCADRDR-IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 94 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 94 (113)
-|+++-|+|+..-.. .......+...... .+ ++++||+|+.++...+.+...... -++..+++.++.
T Consensus 117 ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD---~ivlNK~Dlv~~~~l~~l~~~l~~---lnp~A~i~~~~~ 184 (323)
T COG0523 117 LDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD---VIVLNKTDLVDAEELEALEARLRK---LNPRARIIETSY 184 (323)
T ss_pred eceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc---EEEEecccCCCHHHHHHHHHHHHH---hCCCCeEEEccc
Confidence 478999999986432 22233444443332 22 899999999775433332222221 124456777765
|
|
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.79 Score=24.95 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=13.1
Q ss_pred hHHhhhcCCcEEEEEEECCCh
Q psy17510 11 LWRHYYTGTQGLIFVVDCADR 31 (113)
Q Consensus 11 ~~~~~~~~~~~vi~v~d~~~~ 31 (113)
.++.-++.||+||++.|..+.
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH 61 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSH 61 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcCh
Confidence 345566666777777766654
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.2 Score=26.56 Aligned_cols=60 Identities=7% Similarity=-0.071 Sum_probs=38.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|+|+.... .....+..+|.++++++++. .++.....+++.+... ......++.|+.+...
T Consensus 69 D~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 69 DSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM 128 (179)
T ss_pred ECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc
Confidence 67765333 23345678999999998763 4555555555555431 2345778999998654
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.44 Score=28.13 Aligned_cols=51 Identities=14% Similarity=0.123 Sum_probs=28.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
||+|.. ... ...+..||.++++..+.-. +....++.-. ...-=++++||+|
T Consensus 98 DtaG~~--~~~-~~~~~~Ad~~ivv~tpe~~----D~y~~~k~~~-----~~~~~~~~~~k~~ 148 (148)
T cd03114 98 ETVGVG--QSE-VDIASMADTTVVVMAPGAG----DDIQAIKAGI-----MEIADIVVVNKAD 148 (148)
T ss_pred ECCccC--hhh-hhHHHhCCEEEEEECCCch----hHHHHhhhhH-----hhhcCEEEEeCCC
Confidence 677753 222 3477889988888877622 2222222211 1122378899987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=92.44 E-value=2 Score=28.07 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=38.8
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCCCccCCCCeEEEeccccC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPSCATT 96 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~ 96 (113)
.+|.+++|+|++.. .+.. .....+.+. . -+.-++.||.|...... .-.+....+ .|+..++ +
T Consensus 190 ~~~~~~LVl~a~~~--~~~~-~~~~~f~~~---~-~~~g~IlTKlDe~~~~G~~l~~~~~~~--------~Pi~~~~--~ 252 (272)
T TIGR00064 190 APDEVLLVLDATTG--QNAL-EQAKVFNEA---V-GLTGIILTKLDGTAKGGIILSIAYELK--------LPIKFIG--V 252 (272)
T ss_pred CCceEEEEEECCCC--HHHH-HHHHHHHhh---C-CCCEEEEEccCCCCCccHHHHHHHHHC--------cCEEEEe--C
Confidence 38999999999743 2222 222333221 1 24578999999744322 222333333 3565666 7
Q ss_pred CCCHHHHH
Q psy17510 97 ADGLYEGL 104 (113)
Q Consensus 97 ~~~i~~~~ 104 (113)
|++++++.
T Consensus 253 Gq~~~dl~ 260 (272)
T TIGR00064 253 GEKIDDLA 260 (272)
T ss_pred CCChHhCc
Confidence 78776653
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.93 Score=29.26 Aligned_cols=64 Identities=6% Similarity=-0.046 Sum_probs=34.7
Q ss_pred CCCCccCchh----------hHHhhhc--CCcEEEEEEECCChh-hHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRP----------LWRHYYT--GTQGLIFVVDCADRD-RID--EARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~----------~~~~~~~--~~~~vi~v~d~~~~~-~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||...... ....|++ ..|++++|...+... ... ...+.+....... --.++++|.||+|..
T Consensus 85 DTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~ 162 (249)
T cd01853 85 DTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASS 162 (249)
T ss_pred ECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccC
Confidence 8899765521 1223443 568888887665322 222 2233334332211 124799999999974
Q ss_pred C
Q psy17510 66 D 66 (113)
Q Consensus 66 ~ 66 (113)
.
T Consensus 163 ~ 163 (249)
T cd01853 163 P 163 (249)
T ss_pred C
Confidence 3
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=91.47 E-value=2.7 Score=27.47 Aligned_cols=106 Identities=18% Similarity=0.282 Sum_probs=56.6
Q ss_pred CCCCccCch-h--hHHhhhcCCcEEEEEEECCChhhHHHHHHH---HHHHHcCcCCCCCeEEEEEeCCCCCCC-CC---H
Q psy17510 1 DVGGQDKIR-P--LWRHYYTGTQGLIFVVDCADRDRIDEARQE---LHRIINDREMRDAIILIFANKQDLPDA-MK---P 70 (113)
Q Consensus 1 D~~G~~~~~-~--~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~---~ 70 (113)
|.|||-.+- . -.+..++++-++|||+|.-+. -.+...++ +....+. -+++.+=+.+.|.|-... .. .
T Consensus 81 dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykv--Np~in~EVfiHKvDGLsdd~kietq 157 (347)
T KOG3887|consen 81 DFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKV--NPNINFEVFIHKVDGLSDDFKIETQ 157 (347)
T ss_pred ecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeec--CCCceEEEEEEeccCCchhhhhhhH
Confidence 567875442 2 235578899999999998643 22222222 2222222 257788889999995432 11 1
Q ss_pred HHHHHH----hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 71 HEIQEK----LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 71 ~~~~~~----~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.++.+. +.......-.+.++.+|.. ...|.+.|..+++.
T Consensus 158 rdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQk 200 (347)
T KOG3887|consen 158 RDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQK 200 (347)
T ss_pred HHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHH
Confidence 122221 1111122233456677654 45667776666554
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.73 Score=28.80 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=32.4
Q ss_pred hhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 15 YYTGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
...+.|++++|+..... .......+++..+..... -.-++++.|..|........
T Consensus 80 ~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~ 135 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLE 135 (212)
T ss_dssp TTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHH
T ss_pred ccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHH
Confidence 34578999999998742 123333456666654321 23578888888865544433
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.37 Score=34.50 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=41.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
|.|||-.|.+-.-..+.-.|+.++|+|+-+.-..+ +...+.+.... .+.-+++.||.|.
T Consensus 104 DSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 104 DSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred cCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHHh----hccceEEeehhhH
Confidence 78999999988877888899999999997642211 23344555432 3444778999993
|
|
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=89.15 E-value=2.5 Score=26.67 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=37.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|||+. ........+..+|.+++++.++ ..++......+..+.+. .....++-++.|+.+...
T Consensus 121 D~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 121 DVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAG-SGPRIGPHFLINQFDPAR 182 (246)
T ss_pred ECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhc-ccccccceEEeeccCcch
Confidence 56663 3445566778899999999875 33444444333333221 113456779999998643
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=88.44 E-value=5.8 Score=26.68 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=37.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCCCccCCCCeEEEeccccC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPSCATT 96 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~ 96 (113)
..+.+++|+|++.. .+...+ ....... --+.-++.||.|...... .-.+.... +.|+..++ +
T Consensus 232 ~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIlTKlD~t~~~G~~l~~~~~~--------~~Pi~~v~--~ 294 (318)
T PRK10416 232 APHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIILTKLDGTAKGGVVFAIADEL--------GIPIKFIG--V 294 (318)
T ss_pred CCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEEECCCCCCCccHHHHHHHHH--------CCCEEEEe--C
Confidence 46788999999853 222222 2222111 124579999999543221 22233332 33566776 7
Q ss_pred CCCHHHHH
Q psy17510 97 ADGLYEGL 104 (113)
Q Consensus 97 ~~~i~~~~ 104 (113)
|++++++.
T Consensus 295 Gq~~~Dl~ 302 (318)
T PRK10416 295 GEGIDDLQ 302 (318)
T ss_pred CCChhhCc
Confidence 78876653
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=88.21 E-value=6.2 Score=26.79 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=45.8
Q ss_pred CCCCccCch-hhHHh---h--hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHH
Q psy17510 1 DVGGQDKIR-PLWRH---Y--YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEI 73 (113)
Q Consensus 1 D~~G~~~~~-~~~~~---~--~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~ 73 (113)
||+|..... .++.. . ....|.+++|+|++... +.......+.+. . .+--++.||.|...... .-.+
T Consensus 229 DTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~---~-~~~giIlTKlD~~~~~G~~ls~ 301 (336)
T PRK14974 229 DTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA---V-GIDGVILTKVDADAKGGAALSI 301 (336)
T ss_pred ECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc---C-CCCEEEEeeecCCCCccHHHHH
Confidence 788876432 22211 1 23578889999886532 222222222211 1 23478899999754322 1122
Q ss_pred HHHhCCCccCCCCeEEEeccccCCCCHHHHHH
Q psy17510 74 QEKLGLTRIRDRNWYVQPSCATTADGLYEGLT 105 (113)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 105 (113)
.... +.|+..++ +|++++++..
T Consensus 302 ~~~~--------~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 302 AYVI--------GKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred HHHH--------CcCEEEEe--CCCChhhccc
Confidence 2222 23566666 7888877643
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=87.84 E-value=3.4 Score=28.50 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=41.7
Q ss_pred hcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCC---------CCCCCHH----HHHHHhCCCc
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDL---------PDAMKPH----EIQEKLGLTR 81 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~---------~~~~~~~----~~~~~~~~~~ 81 (113)
+...|.+|++.+. ++.... .+...+.+ .++|+.+|-+|+|. +...+.+ ++.+... ..
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~-~~ 182 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCL-EN 182 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHH-HH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHH-HH
Confidence 5567988887753 244443 34445543 58999999999994 1112222 2221111 11
Q ss_pred cCC---CCeEEEeccccCC--CCHHHHHHHHHhhc
Q psy17510 82 IRD---RNWYVQPSCATTA--DGLYEGLTWLTSNH 111 (113)
Q Consensus 82 ~~~---~~~~~~~~sa~~~--~~i~~~~~~l~~~~ 111 (113)
+.. ..-++|-+|+.+- .++..+.+.|.+.+
T Consensus 183 L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 183 LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred HHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 111 2336788887654 35777777777654
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=87.74 E-value=0.96 Score=35.55 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=30.8
Q ss_pred CCcEEEEEEECCCh-----hhH----HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCADR-----DRI----DEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~~-----~~~----~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
.-+|||+++|+.+- ... .....-+.++.+. .....||.++.||+|+..
T Consensus 201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 46999999998741 111 1223344444332 235789999999999864
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=87.52 E-value=1.3 Score=29.09 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=28.5
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
+.|+++|+++++...--......++.+. ...++|.|+.|.|...
T Consensus 113 RVH~cLYfI~pt~~~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 113 RVHACLYFIPPTGHGLKPLDIEFMKRLS-----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp -EEEEEEEE-TTSSSS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred CcceEEEEEcCCCccchHHHHHHHHHhc-----ccccEEeEEecccccC
Confidence 5699999999875321122235566663 4589999999999754
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=86.56 E-value=3.5 Score=25.67 Aligned_cols=47 Identities=9% Similarity=-0.009 Sum_probs=27.8
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA-IILIFANKQDLP 65 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~ 65 (113)
.||.+++++.++ ..++......++.+.......+. ...++.|+.+..
T Consensus 141 ~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 141 KADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 789999999775 34554444444444332211233 346899999853
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >CHL00175 minD septum-site determining protein; Validated | Back alignment and domain information |
|---|
Probab=85.76 E-value=5.2 Score=26.01 Aligned_cols=58 Identities=12% Similarity=-0.013 Sum_probs=35.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
|||+.- .......+..+|.+++|++++ ..++......++.+.+. ....+-+++|+.+-
T Consensus 133 Dtpp~~--~~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~---~~~~~~lvvN~~~~ 190 (281)
T CHL00175 133 DCPAGI--DVGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEAN---GIYNVKLLVNRVRP 190 (281)
T ss_pred eCCCCC--CHHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHc---CCCceEEEEeccCh
Confidence 566543 223334556789999988776 44566665555555432 12345678899874
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=85.16 E-value=1.4 Score=26.69 Aligned_cols=44 Identities=30% Similarity=0.359 Sum_probs=27.3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
.-+.+|.|+|+.+..........+...... .+ ++++||+|+.+.
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---AD---vIvlnK~D~~~~ 156 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPELLREQIAF---AD---VIVLNKIDLVSD 156 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCHHHHHHHCT----S---EEEEE-GGGHHH
T ss_pred cccceeEEeccccccccccchhhhhhcchh---cC---EEEEeccccCCh
Confidence 458899999997654344444444444433 22 789999998653
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >TIGR01968 minD_bact septum site-determining protein MinD | Back alignment and domain information |
|---|
Probab=84.40 E-value=6.8 Score=24.88 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=36.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
|+|+.-. ......+..+|.+++++.++ ..++......++.+... ...++.+++|+.+.
T Consensus 118 D~p~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~iviN~~~~ 175 (261)
T TIGR01968 118 DCPAGIE--SGFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAK---GIEKIHLIVNRLRP 175 (261)
T ss_pred eCCCCcC--HHHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHc---CCCceEEEEeCcCc
Confidence 5665432 22334567899999998776 44566665555555432 22367788999874
|
This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. |
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
Probab=84.00 E-value=2.9 Score=25.23 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=35.7
Q ss_pred HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 12 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
....+..+|.+|++++++. .+......+++.+..... .-..+.++.||.+..+
T Consensus 110 ~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 110 VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGK-KLKIIGVVINRVDPGN 162 (195)
T ss_dssp HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTH-TEEEEEEEEEEETSCC
T ss_pred HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhcc-ccceEEEEEeeeCCCc
Confidence 4557779999999999874 456666666666643210 1236688999998653
|
These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A .... |
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=83.94 E-value=4.5 Score=26.11 Aligned_cols=48 Identities=17% Similarity=0.103 Sum_probs=27.0
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEeCCCC
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQDL 64 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~ 64 (113)
+..||.+++++.++ ..++......++.+.+.....+.++ .++.|+.+.
T Consensus 136 l~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 136 LNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred hhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 56799999988765 3344444443333321111134543 478899984
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=83.87 E-value=3.9 Score=28.73 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCCCccCchh-hHHh---h--hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRP-LWRH---Y--YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~-~~~~---~--~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||...... +... + ....+-+++|+|++....- ....+.+.+. --+--+|.||.|..
T Consensus 189 DTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 189 DTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS----VDVGSVIITKLDGH 252 (429)
T ss_pred ECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc----cCCcEEEEECccCC
Confidence 8999755432 2221 1 2246789999998743221 2222223211 12557899999964
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=82.93 E-value=6.7 Score=25.03 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=36.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--cCCCCCeEEEEEeCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND--REMRDAIILIFANKQD 63 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D 63 (113)
||||... ......+..||.+|..+.++ +..+......+..+.+. ....+.|..++.|.++
T Consensus 90 D~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 90 DTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred eCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 6777653 44455677899999888775 33444444443333221 1124678889999986
|
|
| >PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) [] | Back alignment and domain information |
|---|
Probab=82.59 E-value=7.1 Score=22.42 Aligned_cols=30 Identities=13% Similarity=-0.047 Sum_probs=21.8
Q ss_pred cCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 82 IRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 82 ~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+...++.+..+|+-++.++.+..+.....+
T Consensus 91 i~~eRv~~~~~~~~~~~~fa~~~~~f~~~i 120 (124)
T PF02662_consen 91 IEPERVRLYWISAPEGKRFAEIVNEFTERI 120 (124)
T ss_pred CChhHeEEEEeCcccHHHHHHHHHHHHHHH
Confidence 345677888899888888777777666544
|
No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process |
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=81.92 E-value=6.4 Score=26.01 Aligned_cols=51 Identities=14% Similarity=-0.038 Sum_probs=35.5
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 52 DAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
-++++.|-||+|- .+.+++...-.++. -+.+|+...-|++.+++.+-.++.
T Consensus 238 Y~~ClYvYnKID~---vs~eevdrlAr~Pn-------svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 238 YIKCLYVYNKIDQ---VSIEEVDRLARQPN-------SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEEeeccce---ecHHHHHHHhcCCC-------cEEEEeccccCHHHHHHHHHHHhc
Confidence 4789999999995 55777766544432 225566677788888887766554
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=81.86 E-value=4.1 Score=27.34 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=23.7
Q ss_pred CcEEEEEEECCChhhHHHHHHHH-HHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 19 TQGLIFVVDCADRDRIDEARQEL-HRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
-++++.|+|+.+....-...... .++ .. .+ ++++||+|+.+
T Consensus 123 l~~vvtvvDa~~~~~~~~~~~~~~~Qi-~~---AD---~IvlnK~Dl~~ 164 (318)
T PRK11537 123 LDGVIALVDAVHADEQMNQFTIAQSQV-GY---AD---RILLTKTDVAG 164 (318)
T ss_pred eccEEEEEEhhhhhhhccccHHHHHHH-Hh---CC---EEEEeccccCC
Confidence 38899999997532211112222 223 21 22 78999999865
|
|
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=81.62 E-value=11 Score=23.84 Aligned_cols=58 Identities=14% Similarity=0.018 Sum_probs=33.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA-IILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~ 65 (113)
|+|+.... .....+..||.++++++++. .++.......+.... .+. ...++.|+.+..
T Consensus 115 D~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~~----~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 115 DAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVAEK----LGTAILGVVLNRVTRD 173 (251)
T ss_pred eCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHHh----cCCceEEEEEECCCch
Confidence 56654332 23334567999999998763 345544443333322 233 457999999853
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=81.12 E-value=9.3 Score=22.76 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=31.0
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 17 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
..+|.++++..+. +.+.....++++.+.+. .....-++.|+.+.
T Consensus 90 ~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvv~N~~~~ 133 (169)
T cd02037 90 LPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV---NIPILGVVENMSYF 133 (169)
T ss_pred cCCCeEEEEECCc-hhhHHHHHHHHHHHHhc---CCCeEEEEEcCCcc
Confidence 5789999999776 45677777777777653 22344678999874
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >PRK13505 formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
|---|
Probab=80.94 E-value=14 Score=27.00 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 35 DEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
.+..+.++.+.. -++|+++++||.|...
T Consensus 359 ~NL~RHIenvr~----FGvPvVVAINKFd~DT 386 (557)
T PRK13505 359 ANLERHIENIRK----FGVPVVVAINKFVTDT 386 (557)
T ss_pred HHHHHHHHHHHH----cCCCEEEEEeCCCCCC
Confidence 334445555543 6899999999999754
|
|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.68 E-value=11 Score=23.15 Aligned_cols=59 Identities=12% Similarity=-0.093 Sum_probs=34.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH---HHHHHHHHcCcCCCCCe-EEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA---RQELHRIINDREMRDAI-ILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~p-~ilv~nK~D~ 64 (113)
||||. ........+..+|.+|+++.++. .++... ..++...... ..+.| ..++.|+.+.
T Consensus 83 D~p~~--~~~~~~~~l~~aD~viip~~ps~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 83 DGAPQ--DSELARAALRIADMVLIPVQPSP-FDIWAAPDLVELIKARQEV--TDGLPKFAFIISRAIK 145 (211)
T ss_pred eCCCC--ccHHHHHHHHHCCEEEEEeCCCh-hhHHHHHHHHHHHHHHHhh--CCCCceEEEEEeccCC
Confidence 77876 34556678889999999998873 233333 3344443211 12344 4566777654
|
|
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=80.51 E-value=10 Score=25.08 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=27.3
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCC
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 64 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~ 64 (113)
+..||.+|+++.++ +.++......++.+.......+.+ .-++.|+.+.
T Consensus 136 l~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 136 LNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred hhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 45689999988765 445555544443332211113343 4488899874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 113 | ||||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 5e-63 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 1e-62 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 1e-62 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 2e-62 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 6e-62 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 1e-61 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 1e-61 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 1e-61 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 1e-60 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 2e-44 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 2e-43 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 2e-42 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 2e-42 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 3e-42 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 7e-42 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 8e-42 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 2e-41 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 9e-40 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 6e-39 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 1e-38 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 9e-38 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 2e-37 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 2e-37 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 3e-28 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 6e-28 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 7e-27 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 7e-27 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 1e-26 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 1e-26 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 1e-26 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 4e-26 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 5e-25 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 2e-23 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 2e-23 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 3e-23 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 3e-23 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 2e-22 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 1e-21 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 1e-21 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 1e-21 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 9e-21 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 1e-19 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 6e-19 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 5e-17 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-16 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-16 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 1e-14 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 2e-14 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 4e-13 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 4e-13 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 6e-13 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 6e-13 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 2e-11 | ||
| 3ffb_A | 360 | Crystal Structure Of A Fast Activating G Protein Mu | 1e-05 | ||
| 2zjy_A | 356 | Structure Of The K349p Mutant Of Gi Alpha 1 Subunit | 1e-05 | ||
| 3d7m_A | 354 | Crystal Structure Of The G Protein Fast-Exchange Do | 1e-05 | ||
| 3onw_A | 328 | Structure Of A G-Alpha-I1 Mutant With Enhanced Affi | 1e-05 | ||
| 1svk_A | 353 | Structure Of The K180p Mutant Of Gi Alpha Subunit B | 1e-05 | ||
| 2g83_A | 313 | Structure Of Activated G-alpha-i1 Bound To A Nucleo | 1e-05 | ||
| 2xns_A | 327 | Crystal Structure Of Human G Alpha I1 Bound To A De | 1e-05 | ||
| 2ik8_A | 324 | Crystal Structure Of The Heterodimeric Complex Of H | 1e-05 | ||
| 1as0_A | 353 | Gtp-Gamma-S Bound G42v Gia1 Length = 353 | 1e-05 | ||
| 1gp2_A | 353 | G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi | 1e-05 | ||
| 1bh2_A | 315 | A326s Mutant Of An Inhibitory Alpha Subunit Length | 1e-05 | ||
| 2gtp_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 1e-05 | ||
| 3qe0_A | 325 | A Galpha-I1 P-Loop Mutation Prevents Transition To | 1e-05 | ||
| 3qi2_A | 328 | A Galpha P-Loop Mutation Prevents Transition To The | 1e-05 | ||
| 1fqj_A | 325 | Crystal Structure Of The Heterotrimeric Complex Of | 1e-05 | ||
| 4g5q_A | 330 | Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | 1e-05 | ||
| 3v00_C | 356 | Studies Of A Constitutively Active G-Alpha Subunit | 1e-05 | ||
| 1kjy_A | 325 | Crystal Structure Of Human G[alpha]i1 Bound To The | 1e-05 | ||
| 1y3a_A | 329 | Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe | 1e-05 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 2e-05 | ||
| 2ihb_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 4e-05 | ||
| 4g5o_A | 330 | Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length | 4e-05 | ||
| 4g5r_A | 330 | Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | 4e-05 | ||
| 1got_A | 350 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 4e-05 | ||
| 2ode_A | 350 | Crystal Structure Of The Heterodimeric Complex Of H | 5e-05 | ||
| 3ums_A | 354 | Crystal Structure Of The G202a Mutant Of Human G-Al | 6e-05 | ||
| 1gg2_A | 353 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 6e-05 | ||
| 1gil_A | 353 | Structure Of Active Conformations Of Gia1 And The M | 1e-04 | ||
| 3umr_A | 354 | Crystal Structure Of The G202d Mutant Of Human G-Al | 1e-04 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 1e-04 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 1e-04 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 1e-04 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 2e-04 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 2e-04 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 2e-04 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 2e-04 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 2e-04 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 2e-04 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 2e-04 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 2e-04 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 2e-04 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 2e-04 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 3e-04 | ||
| 3c7k_A | 333 | Molecular Architecture Of Galphao And The Structura | 3e-04 | ||
| 3cx7_A | 338 | Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co | 4e-04 | ||
| 1zcb_A | 362 | Crystal Structure Of G Alpha 13 In Complex With Gdp | 5e-04 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 7e-04 |
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356 | Back alignment and structure |
|
| >pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354 | Back alignment and structure |
|
| >pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328 | Back alignment and structure |
|
| >pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353 | Back alignment and structure |
|
| >pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313 | Back alignment and structure |
|
| >pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327 | Back alignment and structure |
|
| >pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324 | Back alignment and structure |
|
| >pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353 | Back alignment and structure |
|
| >pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315 | Back alignment and structure |
|
| >pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323 | Back alignment and structure |
|
| >pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325 | Back alignment and structure |
|
| >pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328 | Back alignment and structure |
|
| >pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325 | Back alignment and structure |
|
| >pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356 | Back alignment and structure |
|
| >pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325 | Back alignment and structure |
|
| >pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323 | Back alignment and structure |
|
| >pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350 | Back alignment and structure |
|
| >pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350 | Back alignment and structure |
|
| >pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353 | Back alignment and structure |
|
| >pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333 | Back alignment and structure |
|
| >pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338 | Back alignment and structure |
|
| >pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 2e-70
Identities = 35/112 (31%), Positives = 64/112 (57%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ + R +W Y G ++++VD AD+++I+ ++ ELH +++ +++ +L+ N
Sbjct: 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
K+DLP A+ E+ EK+ L+ I+DR D + L WL + K
Sbjct: 133 KRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 200 bits (512), Expect = 8e-68
Identities = 51/112 (45%), Positives = 68/112 (60%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ KIRP WR Y+ T LI+V+D ADR R +E QEL ++ + ++ +LIFAN
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDL A EI E L L IRDR W +Q A T +G+ +G+ W+ N
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 9e-68
Identities = 72/112 (64%), Positives = 93/112 (83%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FAN
Sbjct: 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 274
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLP+AM EI +KLGL +R RNWY+Q +CAT+ DGLYEGL WL++ +
Sbjct: 275 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 1e-67
Identities = 52/112 (46%), Positives = 77/112 (68%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ +RP WR Y++ T +I+VVD DRDR+ A+ EL+ ++++ E+R +++LIFAN
Sbjct: 72 DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFAN 131
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDA EI E+LG++ I +R W + S + T DGL EG+ WL +
Sbjct: 132 KQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 2e-67
Identities = 72/112 (64%), Positives = 93/112 (83%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FAN
Sbjct: 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLP+AM EI +KLGL +R RNWY+Q +CAT+ DGLYEGL WL++ +
Sbjct: 110 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 2e-67
Identities = 49/112 (43%), Positives = 69/112 (61%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG IRP WR YY+ T +I+VVD DRDRI ++ EL ++ + E+R AI+++FAN
Sbjct: 57 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFAN 116
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQD+ AM E+ LGL ++DR W + + AT GL E + WL K
Sbjct: 117 KQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 3e-67
Identities = 50/110 (45%), Positives = 73/110 (66%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+ +R W YYT T+ +I VVD DR+RI R+EL++++ ++R A +LIFAN
Sbjct: 71 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 130
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQD+ + M EI + L LT I+D W++Q CA T +GL +GL W+ S
Sbjct: 131 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 7e-67
Identities = 49/112 (43%), Positives = 69/112 (61%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQ +R WR+Y+ T GLI+VVD ADR R+ + ++EL ++ + + A +LIFAN
Sbjct: 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 127
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLP A+ + IQE L L IR +W +Q A T + L G+ WL +
Sbjct: 128 KQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 8e-67
Identities = 51/112 (45%), Positives = 74/112 (66%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+ +R W YYT T+ +I VVD DR+RI R+EL++++ ++R A +LIFAN
Sbjct: 66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 125
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQD+ + M EI + L LT I+D W++Q CA T +GL +GL W+ S K
Sbjct: 126 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 1e-66
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG + R LW+ Y+ G++F+VD AD +R DEAR EL + N E++D +I N
Sbjct: 73 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGN 132
Query: 61 KQDLPDAMKPHEIQEKLGLTRIR-------DRNWYVQPSCATTADGLYEGLTWLTSN 110
K D P+A+ E++ LGL R V +G E WL+
Sbjct: 133 KIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 1e-66
Identities = 65/112 (58%), Positives = 85/112 (75%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R+ E+ EL +++ + E+RDA++L+FAN
Sbjct: 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN 138
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQD+P+AM E+ +KLGL +R R WYVQ +CAT GLY+GL WL+
Sbjct: 139 KQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 5e-66
Identities = 51/112 (45%), Positives = 73/112 (65%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ IRP WR YY T +IFVVD D+DR+ A +ELH ++ + E++DA +L+FAN
Sbjct: 68 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 127
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQD P A+ E+ ++L L ++DR+W + S A +G+ EGL WL K
Sbjct: 128 KQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 1e-65
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM--RDAIILIF 58
D+ GQ + R LW HYY Q +IFV+D +DR R+ A++EL ++N ++ R IL F
Sbjct: 73 DMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132
Query: 59 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
ANK DL DA+ ++ + L L I+D+ W++ S A +GL EG+ WL +
Sbjct: 133 ANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 4e-64
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GG + R +W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI N
Sbjct: 75 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 134
Query: 61 KQDLPDAMKPHEIQEKLG------------LTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
K D P+A+ ++E G L + R V G EG W+
Sbjct: 135 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194
Query: 109 SN 110
Sbjct: 195 QY 196
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 1e-46
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-----REMRDAII 55
V GQ + G G++FV D A +R+ + + + + + D I
Sbjct: 80 TVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGLTLDDVPI 138
Query: 56 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
+I NK+DLPDA+ ++ + + + V + AT G++E L ++
Sbjct: 139 VIQVNKRDLPDALPVEMVRAVVDP----EGKFPVLEAVATEGKGVFETLKEVSRL 189
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-46
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREM--RDAIIL 56
G + + P + G I+V + R + + + + + +++
Sbjct: 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 167
Query: 57 IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
+ Q M + +L L + + W VQ + A T G G+ W+
Sbjct: 168 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEE 220
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 5e-46
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 1 DVGGQDKIRP-LWRHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREM--RDAIIL 56
D+ G + +R L + + + ++FVVD A R + + + L++++ D +L
Sbjct: 60 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLL 119
Query: 57 IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
I NKQD+ A IQ++L R D L K
Sbjct: 120 IACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL--DSSSTAPAQLGKKGK 173
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 132 bits (332), Expect = 3e-39
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 5/114 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDR--EMRDAIIL 56
G + + P + G I+V + R + + + + +++
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 57 IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
+ Q M + +L L + + W VQ + A T G G+ W+
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEE 305
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-38
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 10/118 (8%)
Query: 1 DVGGQDKIRPLWRHYY----TGTQGLIFVVDCA-DRDRIDEARQELHRIINDREMRDAI- 54
D G K+R Y +GLIF+VD D ++ + L I++ E
Sbjct: 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120
Query: 55 --ILIFANKQDLPDAMKPHEIQEKLG--LTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
ILI NK +L A P +I++ L + ++ +R + L
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLD 178
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-37
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 1 DVGGQDKIRPLWRHYY----TGTQGLIFVVDCA-DRDRIDEARQELHRIINDREMRDAI- 54
D G K+R Y +GLIF+VD D ++ + L I++ E
Sbjct: 97 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 156
Query: 55 --ILIFANKQDLPDAMKPHEIQEKLG--LTRIRDR 85
ILI NK +L A P +I++ L + ++ +R
Sbjct: 157 IDILIACNKSELFTARPPSKIKDALESEIQKVIER 191
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 1e-19
Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 15/116 (12%)
Query: 1 DVGGQDKIRPLW---RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN--DREMRDAII 55
D GQ + GT LI+V+D D EA LH ++ + D
Sbjct: 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM--EALTRLHITVSKAYKVNPDMNF 132
Query: 56 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111
+F +K D E Q RD + A +LTS +
Sbjct: 133 EVFIHKVDGLSDDHKIETQ--------RDIHQRANDDLADAGLEKLHLSFYLTSIY 180
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 1e-16
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 1 DVGGQDK-----IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAI 54
D GGQD H + Q LI V D + + + + R+ DA
Sbjct: 58 DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK 117
Query: 55 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDR---NWYVQPSCATT 96
I + +K DL K E+ + + + + + + T
Sbjct: 118 IFVLLHKMDLVQLDKREELFQIM-MKNLSETSSEFGFPNLIGFPT 161
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 2e-09
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 1 DVGGQDKIRPLW---RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN--DREMRDAII 55
++ GQ + L++V+D D A L II + I
Sbjct: 52 ELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYI--NAITNLAMIIEYAYKVNPSINI 109
Query: 56 LIFANKQDLPDAMKPHEIQEKL 77
+ +K D + Q +
Sbjct: 110 EVLIHKVDGLSEDFKVDAQRDI 131
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 1e-05
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W + ++F+V ++ D R+ E+ I+N+R
Sbjct: 207 DVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266
Query: 51 RDAIILIFANKQDLPDAMKPH 71
+ I++F NK DL +
Sbjct: 267 SNVSIILFLNKTDLLEEKVQV 287
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-05
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ L YY Q + V D +AR + ++++ +D II + N
Sbjct: 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGN 116
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADG 99
K D ++ + G ++ + A T +
Sbjct: 117 KIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 2e-05
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D GQ++ + L +Y G + V D +D R E + R+ + ++
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 123 LGNKIDLEN 131
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-05
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D GQ++ + L +Y G + V D + + I R E N +I
Sbjct: 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123
Query: 58 FANKQDLPDAMK 69
NK D ++ K
Sbjct: 124 LGNKIDAEESKK 135
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 3e-05
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + G +IF ++ D R+ E ++ ++
Sbjct: 189 DVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248
Query: 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWY 88
++F NK D+ ++K+ + W+
Sbjct: 249 EKTSFMLFLNKFDI--------FEKKVLDVPLNVCEWF 278
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 3e-05
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D GQ++ R L +Y G+ + D + ++E + +E +I
Sbjct: 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121
Query: 58 FANKQDLPD 66
NK D+ +
Sbjct: 122 LGNKIDISE 130
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 6e-05
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W + +IFVV + + R+ EA I N+R +
Sbjct: 223 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282
Query: 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATT 96
R +++F NKQDL + EK+ + + +++ + + TT
Sbjct: 283 RTISVILFLNKQDL--------LAEKVLAGKSKIEDYFPEFARYTT 320
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 6e-05
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D++ + +Q L I+ + L+ N
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGN 129
Query: 61 KQDLPD 66
K DL
Sbjct: 130 KCDLTT 135
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 6e-05
Identities = 13/66 (19%), Positives = 27/66 (40%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + Y +G + V + ++ +I ++ D +++ N
Sbjct: 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
Query: 61 KQDLPD 66
K DLP
Sbjct: 118 KCDLPS 123
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 6e-05
Identities = 13/66 (19%), Positives = 26/66 (39%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + Y +G + V + + +I ++ D +++ N
Sbjct: 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134
Query: 61 KQDLPD 66
K DLP
Sbjct: 135 KCDLPT 140
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 6e-05
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + G +IF V +D D R+ E+ + I N++
Sbjct: 199 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258
Query: 51 RDAIILIFANKQDLPDAMKPH 71
D I++F NK+DL +
Sbjct: 259 TDTSIILFLNKKDLFEEKIKK 279
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 7e-05
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D +Q +N+ +A +L+ N
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGN 133
Query: 61 KQDLPD 66
K D+
Sbjct: 134 KSDMET 139
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 8e-05
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ---ELHRIINDREMRDAIILI 57
D GQ+ R + R YY G G + V D R+ + + + + + +I++
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIML 131
Query: 58 FANKQDLPD 66
NK DL
Sbjct: 132 IGNKSDLES 140
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 9e-05
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G+++ H+ T + V D + +A + I R +IL+
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILV-GT 120
Query: 61 KQDLPDAMKPHEIQEKLG 78
D+ D + K+
Sbjct: 121 HLDVSDEKQRKACMSKIT 138
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 9e-05
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D +Q +N+ +A +L+ N
Sbjct: 58 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT-VNEHANDEAQLLLVGN 116
Query: 61 KQDLPD 66
K D+
Sbjct: 117 KSDMET 122
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 9e-05
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D GQ+K L YY G G I D R + +E ++ + +A I++
Sbjct: 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVV 122
Query: 58 FANKQDLPDA-MKPHEIQEKL 77
ANK D+ + ++ ++
Sbjct: 123 CANKIDIKNRQKISKKLVMEV 143
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 1e-04
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY GT G+I V D + ++ LH I ++ D ++ N
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGN 121
Query: 61 KQDLPD 66
K D P+
Sbjct: 122 KNDDPE 127
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 1e-04
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G + V D A + + L + D + +I++ N
Sbjct: 60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGN 118
Query: 61 KQDLPD 66
K DL
Sbjct: 119 KSDLRH 124
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 38.3 bits (90), Expect = 1e-04
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D+GGQ + Y G QG++ V D + + +++ + ++ + E ++ +
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESE-TQPLVAL 120
Query: 58 FANKQDLPD 66
NK DL
Sbjct: 121 VGNKIDLEH 129
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 1e-04
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + YY G I V D ++ + +D A+ ++++ + + II++ AN
Sbjct: 99 DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL---KISSNYIIILVAN 155
Query: 61 KQDLPD 66
K D
Sbjct: 156 KIDKNK 161
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 38.4 bits (90), Expect = 1e-04
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D++ + +Q L I+ + L+ N
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGN 146
Query: 61 KQDLPD 66
K DL
Sbjct: 147 KCDLTT 152
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 38.4 bits (90), Expect = 1e-04
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G+ G+I V D D++ + + L I+ + L+ N
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE-IDRYATSTVLKLLVGN 121
Query: 61 KQDLPD 66
K DL D
Sbjct: 122 KCDLKD 127
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 38.4 bits (90), Expect = 1e-04
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R L YY G QG+I V D RD + L+ + D + ++ N
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129
Query: 61 KQDLPD 66
K D +
Sbjct: 130 KIDKEN 135
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 1e-04
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D G ++ R L Y + + V D + + + ++ D II++
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIML 126
Query: 58 FANKQDLPD 66
NK DL D
Sbjct: 127 VGNKTDLAD 135
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 1e-04
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + + YY LI D + + L I I ++ N
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE-IEQYASNKVITVLVGN 139
Query: 61 KQDLPD 66
K DL +
Sbjct: 140 KIDLAE 145
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 37.9 bits (89), Expect = 2e-04
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G++ V D + D R + I + D +I N
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN-IEEHASADVEKMILGN 121
Query: 61 KQDLPD 66
K D+ D
Sbjct: 122 KCDVND 127
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 2e-04
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G I + D + + + + + I +A +++ N
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQ-IKTYSWDNAQVILVGN 136
Query: 61 KQDLPD 66
K D+ +
Sbjct: 137 KCDMEE 142
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 37.5 bits (88), Expect = 2e-04
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY + G I V D D D + + +EL +++ + + + I
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCI 116
Query: 58 FANKQDLPD 66
NK DL
Sbjct: 117 VGNKIDLEK 125
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 2e-04
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G + + D A+++ + + I +A +++ N
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQ-IKTYSWDNAQVILVGN 135
Query: 61 KQDLPD 66
K DL D
Sbjct: 136 KCDLED 141
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 2e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ R + YY G G + V D + L + D ++++ N
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE-LYDHAEATIVVMLVGN 138
Query: 61 KQDLPD 66
K DL
Sbjct: 139 KSDLSQ 144
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 4 GQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFAN 60
G + + R + I V R + + +++ I D E I++ N
Sbjct: 60 GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE--SIPIMLVGN 117
Query: 61 KQDLPD 66
K D
Sbjct: 118 KCDESP 123
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 37.7 bits (88), Expect = 3e-04
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D GQ+K L YY Q I + D R + ++L R+ + I++
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVL 124
Query: 58 FANKQDLPD 66
NK D+ D
Sbjct: 125 CGNKVDIKD 133
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 37.1 bits (87), Expect = 3e-04
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G Q I V D + + A+ +EL R + + +I +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIAL 116
Query: 58 FANKQDLPD 66
NK DL +
Sbjct: 117 SGNKADLAN 125
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 37.2 bits (87), Expect = 3e-04
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D G + + R + I V + + + + + +I E D +++
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE--DIPVML 119
Query: 58 FANKQDLPD 66
NK D
Sbjct: 120 VGNKCDETQ 128
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 37.4 bits (87), Expect = 3e-04
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ---ELHRIINDREMRDAIILI 57
D GQ++ R + YY G G + V D + + EL +D + + +
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD----NVAVGL 123
Query: 58 FANKQDLPD 66
NK DL
Sbjct: 124 IGNKSDLAH 132
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 37.2 bits (87), Expect = 3e-04
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ R L Y + + V D + + + ++ D II++
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIML 124
Query: 58 FANKQDLPD 66
NK DL D
Sbjct: 125 VGNKTDLSD 133
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 37.2 bits (87), Expect = 3e-04
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ L YY G+ + V D +D + +EL + + ++ I
Sbjct: 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAI 133
Query: 58 FANKQDLPD 66
NK DL D
Sbjct: 134 AGNKCDLSD 142
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 37.2 bits (87), Expect = 3e-04
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + YY +G+I V D ++ D+ + + I+ DA +L+ N
Sbjct: 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKM-IDKYASEDAELLLVGN 139
Query: 61 KQDLPD 66
K D
Sbjct: 140 KLDCET 145
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 36.9 bits (86), Expect = 4e-04
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ R + YY G G I + D + + + + + I +A +L+ N
Sbjct: 63 DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ-IKTYSWDNAQVLLVGN 121
Query: 61 KQDLPD 66
K D+ D
Sbjct: 122 KCDMED 127
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 36.8 bits (86), Expect = 4e-04
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ R + R YY G G + V D R + + + N + +I++
Sbjct: 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIIL 125
Query: 58 FANKQDLPD 66
NK DL
Sbjct: 126 IGNKADLEA 134
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 36.8 bits (86), Expect = 4e-04
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY L+ + D ++ D + L I++ D +++ N
Sbjct: 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE-IHEYAQHDVALMLLGN 124
Query: 61 KQDLPD 66
K D
Sbjct: 125 KVDSAH 130
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 36.8 bits (86), Expect = 5e-04
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D G ++ R + YY G G + V D A + + L + D + +I++ N
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGN 142
Query: 61 KQDLPD 66
K DL
Sbjct: 143 KSDLRH 148
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 36.3 bits (85), Expect = 5e-04
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D G ++ R L YY G+ I V D + + +EL + ++ I
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAI 116
Query: 58 FANKQDLPD 66
NK DL D
Sbjct: 117 AGNKCDLTD 125
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 36.4 bits (85), Expect = 5e-04
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + Y G + V DR +E + +I+ ++ D +++ N
Sbjct: 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 122
Query: 61 KQDLPD 66
K DL
Sbjct: 123 KADLES 128
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 36.5 bits (85), Expect = 5e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + + YY G I D R + + + + L+ N
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED-VRKYAGSNIVQLLIGN 142
Query: 61 KQDLPD 66
K DL +
Sbjct: 143 KSDLSE 148
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 36.4 bits (85), Expect = 5e-04
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ R + R YY G G + V D R+ + + + + + +I++
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIIL 120
Query: 58 FANKQDLPD 66
NK+DL
Sbjct: 121 CGNKKDLDA 129
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 36.9 bits (85), Expect = 5e-04
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GGQ+ + + + T + + ++D + + + + +++ N
Sbjct: 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGG-----KSPVIVVMN 158
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGL 100
K D + I++K R DG+
Sbjct: 159 KIDENP---SYNIEQKKINERFPAIENRFHRISCKNGDGV 195
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/63 (19%), Positives = 23/63 (36%)
Query: 4 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63
GQD+ + Y G I V + + ++++ I++ NK+D
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 64 LPD 66
L
Sbjct: 123 LHM 125
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 36.5 bits (85), Expect = 6e-04
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILI 57
D G D + Y+ G I V D + + + L DRE +L+
Sbjct: 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138
Query: 58 FANKQDLPD 66
ANK DLP
Sbjct: 139 -ANKTDLPP 146
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 36.3 bits (85), Expect = 6e-04
Identities = 13/66 (19%), Positives = 27/66 (40%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ + Y +G + V + ++ Q +I ++ D +++ N
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 61 KQDLPD 66
K DL
Sbjct: 117 KSDLAA 122
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 36.3 bits (85), Expect = 6e-04
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ+ + +Y+ +G + V + + +I+ +E + L+ N
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117
Query: 61 KQDLPD 66
K DL D
Sbjct: 118 KSDLED 123
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 36.4 bits (85), Expect = 6e-04
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ+ + +Y+ +G + V + + +I+ +E + L+ N
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 127
Query: 61 KQDLPD 66
K DL D
Sbjct: 128 KSDLED 133
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 36.4 bits (85), Expect = 6e-04
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 1 DVGGQDKIRPLW--RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 58
D +K+ W G + V ADR + A + ++ + I++
Sbjct: 58 DTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILV 117
Query: 59 ANKQDLPD 66
NK DL
Sbjct: 118 GNKADLAR 125
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 36.4 bits (85), Expect = 7e-04
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ+ + +Y+ +G + V + + +I+ +E + L+ N
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 131
Query: 61 KQDLPD 66
K DL D
Sbjct: 132 KSDLED 137
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 36.5 bits (85), Expect = 7e-04
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 57
D GQ++ R + R YY G G + V D R+ + + + + + ++++
Sbjct: 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVIL 135
Query: 58 FANKQDLPD 66
NK+DL
Sbjct: 136 CGNKKDLDP 144
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 36.0 bits (84), Expect = 9e-04
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 1 DVGGQDKIRP-LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 59
D GQ++ R + +HYY ++FV D + + D ++
Sbjct: 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134
Query: 60 NKQDLPD 66
NK DL
Sbjct: 135 NKCDLRS 141
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 35.9 bits (84), Expect = 9e-04
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 4 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63
QD R L H + V D+ ++A + ++ R+ D I++ NK D
Sbjct: 58 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 117
Query: 64 LPD 66
L
Sbjct: 118 LVR 120
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 113 | |||
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.93 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.93 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.92 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.92 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.92 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.92 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.91 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.91 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.91 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.91 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.91 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.91 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.91 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.91 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.9 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.89 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.89 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.89 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.88 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.87 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.86 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.86 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.85 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.85 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.85 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.85 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.85 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.85 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.85 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.85 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.84 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.84 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.84 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.84 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.84 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.84 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.84 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.84 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.84 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.84 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.83 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.83 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.83 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.83 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.83 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.83 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.83 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.83 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.83 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.83 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.83 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.83 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.83 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.83 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.83 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.83 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.83 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.83 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.83 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.83 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.83 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.83 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.82 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.82 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.82 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.82 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.82 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.82 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.82 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.82 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.82 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.82 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.82 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.82 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.82 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.82 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.82 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.82 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.82 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.81 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.81 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.81 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.81 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.81 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.81 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.81 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.81 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.81 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.81 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.81 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.81 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.81 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.81 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.8 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.8 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.8 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.8 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.8 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.8 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.8 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.8 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.79 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.79 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.78 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.78 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.78 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.77 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.64 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.76 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.76 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.75 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.73 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.73 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.71 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.71 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.7 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.7 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.69 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.69 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.68 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.67 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.67 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.66 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.65 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.63 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.62 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.61 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.6 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.6 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.6 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.6 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.59 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.59 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.59 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.59 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.58 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.58 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.58 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.57 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.57 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.56 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.56 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.55 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.55 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.54 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.54 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.54 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.53 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.53 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.53 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.53 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.51 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.51 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.5 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.49 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.47 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.47 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.46 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.45 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.45 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.45 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.45 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.43 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.43 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.42 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.41 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.41 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.38 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.37 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.36 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.32 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.31 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.31 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.3 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.29 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.28 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.26 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.25 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.23 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.22 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.21 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.2 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.19 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.15 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.14 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.12 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.11 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.1 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.09 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.01 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.01 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.0 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.97 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 98.96 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 98.93 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 98.93 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 98.86 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 98.84 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 98.83 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.81 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 98.76 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 98.74 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.72 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.72 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 98.64 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.59 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.59 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 98.58 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 98.43 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.34 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.28 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.26 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.25 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 97.88 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 97.83 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 96.83 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 96.6 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 94.9 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 94.9 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 94.11 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 93.22 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 92.7 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 92.23 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 91.54 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 91.48 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 90.83 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 90.62 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 90.06 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 89.76 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 88.57 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 88.42 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 87.96 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 85.48 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 85.14 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 83.92 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 83.82 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 81.12 |
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=127.59 Aligned_cols=112 Identities=64% Similarity=1.214 Sum_probs=97.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+.....++.+.++..
T Consensus 50 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 129 (164)
T 1r8s_A 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 129 (164)
T ss_dssp ECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred EcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999999999999999988765445689999999999998776677787777765
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.....+++++++||+++.|++++++++.+.+.
T Consensus 130 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 130 SLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred cccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 55566789999999999999999999988763
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=129.28 Aligned_cols=111 Identities=46% Similarity=0.823 Sum_probs=96.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..|+.++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+....+++.+.++..
T Consensus 66 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 145 (181)
T 1fzq_A 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLH 145 (181)
T ss_dssp ECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCch
Confidence 89999999999999999999999999999999999998898888665434679999999999998776677777776655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
......+++++|||++|.|++++|+++.+.+
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 146 TIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred hccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 4455678999999999999999999998765
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=129.20 Aligned_cols=112 Identities=58% Similarity=1.141 Sum_probs=93.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+.....++.+.++..
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 158 (192)
T 2b6h_A 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQ 158 (192)
T ss_dssp ECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999999999999999988765444689999999999998776777888877766
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.....++++++|||+++.|++++++++.+.+.
T Consensus 159 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 159 HLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred cccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 56567789999999999999999999998764
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-25 Score=137.95 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=86.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||+|+++|+.++..|+.+++++++|||++++.+++....|+..+.... ..+.|++||+||+|+.+. .+.++..+ +.
T Consensus 68 DtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~-~a 145 (216)
T 4dkx_A 68 DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-KA 145 (216)
T ss_dssp CCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-HH
T ss_pred ECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhh-HH
Confidence 899999999999999999999999999999999999999999886543 367899999999998653 23332221 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++++++|||++|.|++++|+.|++.+
T Consensus 146 ----~~~~~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 146 ----KELNVMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp ----HHHTCEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred ----HHhCCeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 11235689999999999999999998765
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.9e-24 Score=127.15 Aligned_cols=112 Identities=46% Similarity=0.830 Sum_probs=93.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+.....++.+.+...
T Consensus 66 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 145 (187)
T 1zj6_A 66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLT 145 (187)
T ss_dssp ECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChh
Confidence 89999999999999999999999999999999999999999998765434679999999999998766677777766654
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+...+++++++||+++.|++++++++++.+.
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 146 SIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp GCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred hhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 44456789999999999999999999987653
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-24 Score=125.17 Aligned_cols=111 Identities=43% Similarity=0.848 Sum_probs=97.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.++.....|+..+.......++|+++++||+|+.+.....++.+.++..
T Consensus 57 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 136 (171)
T 1upt_A 57 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLP 136 (171)
T ss_dssp EECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG
T ss_pred ECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCch
Confidence 89999999999999999999999999999998999998999888765444689999999999998776777777777665
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++++||+++.|++++++++.+.+
T Consensus 137 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 137 ALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp GCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 5556778999999999999999999998765
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-24 Score=128.53 Aligned_cols=112 Identities=31% Similarity=0.657 Sum_probs=90.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..|+.++|++++|+|++++.+++....|+..+.+.....++|+++++||+|+.+..+.+++.+.....
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 154 (198)
T 1f6b_A 75 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLY 154 (198)
T ss_dssp EECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCT
T ss_pred ECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcc
Confidence 89999999999999999999999999999999999999999988765444689999999999998766677776665532
Q ss_pred c---------cC---CCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 R---------IR---DRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~---------~~---~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. +. ...+++++|||++|.|++++|+++.+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l~ 198 (198)
T 1f6b_A 155 GQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198 (198)
T ss_dssp TTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred cccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 1 11 24678999999999999999999998753
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=126.94 Aligned_cols=111 Identities=35% Similarity=0.638 Sum_probs=94.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++..+|++++|+|++++.+++....|+..+.+.....++|+++++||+|+.+..+.+++.+.+...
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 152 (190)
T 1m2o_B 73 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLL 152 (190)
T ss_dssp ECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCS
T ss_pred ECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCc
Confidence 89999999999999999999999999999999999999999988765444689999999999998766677777665543
Q ss_pred c-------cCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 R-------IRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~-------~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .....+++++|||+++.|++++|+++.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 153 NTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp SCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccccccccccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 2 123567899999999999999999998753
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-24 Score=126.67 Aligned_cols=111 Identities=45% Similarity=0.828 Sum_probs=95.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.....++.+.....
T Consensus 71 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 150 (181)
T 2h17_A 71 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLT 150 (181)
T ss_dssp EESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999998999999999888765334689999999999998776777777776655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++++||+++.|++++|++|.+.+
T Consensus 151 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 151 SIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp GCCSSCEEEEECBTTTTBTHHHHHHHHHTC-
T ss_pred cccCCceEEEEccCCCCcCHHHHHHHHHhhC
Confidence 5555678999999999999999999998753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=126.59 Aligned_cols=112 Identities=31% Similarity=0.700 Sum_probs=96.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+.......++|+++|+||+|+.+.....++.+.....
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 152 (188)
T 1zd9_A 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLS 152 (188)
T ss_dssp EECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChh
Confidence 89999999999999999999999999999999999999999888765434679999999999998766667777776655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.....+++++++||+++.|++++|+++.+.+.
T Consensus 153 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 153 AIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred hhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55556788999999999999999999998764
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=126.04 Aligned_cols=111 Identities=44% Similarity=0.836 Sum_probs=96.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..+++++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.....++.+.+...
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 147 (186)
T 1ksh_A 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELD 147 (186)
T ss_dssp EECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChh
Confidence 89999999999999999999999999999999999998999888765444679999999999998776777777766654
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++++||+++.|++++++++.+.+
T Consensus 148 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 148 SIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4445678999999999999999999998765
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=126.87 Aligned_cols=111 Identities=47% Similarity=0.910 Sum_probs=97.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..+++++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.....++.+..+..
T Consensus 72 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 151 (189)
T 2x77_A 72 DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVS 151 (189)
T ss_dssp EECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChh
Confidence 89999999999999999999999999999998999999999888765445689999999999998776677777777655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++++||+++.|++++++++.+.+
T Consensus 152 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 152 SIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 5556678999999999999999999998764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=124.99 Aligned_cols=112 Identities=40% Similarity=0.735 Sum_probs=95.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCC--CCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM--RDAIILIFANKQDLPDAMKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 78 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+...... .++|+++|+||+|+.+.....++.+...
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 152 (190)
T 2h57_A 73 DMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC 152 (190)
T ss_dssp EECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC
Confidence 89999999999999999999999999999998999998999888765433 5789999999999987667777766665
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...+...+++++++||+++.|++++++++.+.++
T Consensus 153 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 153 LENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred hhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 4444445789999999999999999999988764
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-24 Score=128.37 Aligned_cols=111 Identities=32% Similarity=0.601 Sum_probs=95.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCC-------CCCeEEEEEeCCCCCCCCCHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-------RDAIILIFANKQDLPDAMKPHEI 73 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~p~ilv~nK~D~~~~~~~~~~ 73 (113)
||||++++..++..++.++|++|+|+|++++.++.....|+..+...... .++|+++|+||+|+.+.....++
T Consensus 69 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~ 148 (199)
T 4bas_A 69 DMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAEL 148 (199)
T ss_dssp EECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHH
T ss_pred ECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHH
Confidence 89999999999999999999999999999999999999999888664221 27899999999999887777777
Q ss_pred HHHhCCCcc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 74 QEKLGLTRI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 74 ~~~~~~~~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+.++.... ...++++++|||+++.|++++|++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 149 VEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp HHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 777765443 45778999999999999999999998764
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=124.42 Aligned_cols=111 Identities=45% Similarity=0.885 Sum_probs=93.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.....++.+.++..
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~ 147 (183)
T 1moz_A 68 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLV 147 (183)
T ss_dssp EEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTT
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 79999999999999999999999999999999999999999988765444689999999999998777777787777655
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++++||+++.|++++++++.+.+
T Consensus 148 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 148 ELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp TCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred cccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 5555678999999999999999999998764
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=132.36 Aligned_cols=112 Identities=64% Similarity=1.214 Sum_probs=95.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..++..++..+|++|+|+|++++.++.....|+..+.......++|+++|+||+|+.+.....++...++..
T Consensus 215 Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~ 294 (329)
T 3o47_A 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 294 (329)
T ss_dssp ECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCT
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchh
Confidence 89999999999999999999999999999999999998888888766545689999999999998877788888888877
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.....+++++++||+++.|++++|++|.+.+.
T Consensus 295 ~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 295 SLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp TCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred hhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 66677899999999999999999999998753
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-23 Score=124.86 Aligned_cols=110 Identities=17% Similarity=0.324 Sum_probs=84.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHH---HHHHcCcC-CCCCeEEEEEeCC-CCCCCCCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQEL---HRIINDRE-MRDAIILIFANKQ-DLPDAMKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~p~ilv~nK~-D~~~~~~~~~~~~ 75 (113)
|.+||++++.+|++||.++|++|||+|.++....+ ....+ ..++.... ..++|++|.+||. |++++.+..++.+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e 186 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 186 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence 45799999999999999999999999999876544 44444 33333332 3789999999995 8888899999999
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+++..+ ...|.+..|||++|+|+.+.++||...++
T Consensus 187 ~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 9998776 47999999999999999999999998764
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=118.01 Aligned_cols=104 Identities=26% Similarity=0.352 Sum_probs=86.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECC------ChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCA------DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~ 74 (113)
||||+++++.++..++.++|++|+|+|++ +..++.....|+..+.. ...++|+++|+||+|+.+....++..
T Consensus 80 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~ 157 (198)
T 3t1o_A 80 TVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDALPVEMVR 157 (198)
T ss_dssp ECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTCCCHHHHH
T ss_pred eCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccccCHHHHH
Confidence 89999999999999999999999999999 44566777778887732 24689999999999998876666665
Q ss_pred HHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.... .++ +++++||+++.|++++|+++.+.+
T Consensus 158 ~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 158 AVVDP-----EGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp HHHCT-----TCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred HHHHh-----cCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 54442 344 799999999999999999998764
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-22 Score=119.75 Aligned_cols=106 Identities=17% Similarity=0.131 Sum_probs=70.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|+++++.++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.. ...+. +.+.
T Consensus 55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~ 133 (166)
T 3q72_A 55 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG-RACA 133 (166)
T ss_dssp ECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHH-HHHH
T ss_pred ECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHH-HHHH
Confidence 89999999999999999999999999999999999999999988765445689999999999987543 22222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..+++++++||+++.|++++|+++.+.+
T Consensus 134 ~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 134 V----VFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp H----HTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred H----HhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 1 1345799999999999999999998765
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-22 Score=118.93 Aligned_cols=106 Identities=22% Similarity=0.314 Sum_probs=84.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-----CCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-----MKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~ 75 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+. ....+. +
T Consensus 58 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~-~ 135 (170)
T 1ek0_A 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEG-E 135 (170)
T ss_dssp EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHH-H
T ss_pred ECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHH-H
Confidence 799999999999999999999999999999999999889988886542 257899999999998643 222222 2
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+. ...+++++++||+++.|++++|+++.+.+.
T Consensus 136 ~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 136 KLA----EEKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp HHH----HHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred HHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 111 112457999999999999999999998764
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-21 Score=116.04 Aligned_cols=105 Identities=18% Similarity=0.289 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++|+|+|++++.+++....|+..+.... ..++|+++|+||+|+.+. .+.++..+...
T Consensus 84 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 162 (201)
T 2hup_A 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE 162 (201)
T ss_dssp CCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH
Confidence 899999999999999999999999999999989998889998886542 257899999999999652 33333332211
Q ss_pred CCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..++ +++++||+++.|++++|+++.+.+
T Consensus 163 -----~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 163 -----HYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp -----HTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----HcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1234 789999999999999999998764
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=123.54 Aligned_cols=110 Identities=18% Similarity=0.329 Sum_probs=88.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHH---HHHcCcC-CCCCeEEEEEeC-CCCCCCCCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELH---RIINDRE-MRDAIILIFANK-QDLPDAMKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~p~ilv~nK-~D~~~~~~~~~~~~ 75 (113)
|.+||++++.+|++||.++|++|||+|.++..+++ ....+. .+..... ..++|++|.+|| .|++++.+..++.+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e 271 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 271 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHH
Confidence 46899999999999999999999999999877654 333222 3332221 368999999996 69999999999999
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+++..+. ..|.+..|||.+|+|+.+.++||.+.++
T Consensus 272 ~L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 272 ELHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HTTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HcCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 99987664 7999999999999999999999998764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-21 Score=115.72 Aligned_cols=107 Identities=17% Similarity=0.274 Sum_probs=82.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+.....+....+..
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~- 136 (189)
T 4dsu_A 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR- 136 (189)
T ss_dssp ECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH-
T ss_pred ECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH-
Confidence 8999999999999999999999999999999999999899888876544568999999999999754322222222211
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 137 ---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 137 ---SYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp ---HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1134689999999999999999998764
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-22 Score=117.45 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=79.1
Q ss_pred CCCCccCchh-hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHh
Q psy17510 1 DVGGQDKIRP-LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~-~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~ 77 (113)
||||++++.. ++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+. ....+..+ +
T Consensus 57 D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~ 135 (169)
T 3q85_A 57 DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-L 135 (169)
T ss_dssp CCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHH-H
T ss_pred ECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHH-H
Confidence 8999999986 778889999999999999999999999999998876543457999999999998643 23332222 1
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...+++++++||+++.|++++|+++.+.+
T Consensus 136 ~----~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 136 A----GTLSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp H----HHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred H----HHcCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 1 12345799999999999999999998865
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=118.50 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=84.1
Q ss_pred CCCCccCchh-hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHh
Q psy17510 1 DVGGQDKIRP-LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~-~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~ 77 (113)
||+|++++.. ++..|+..+|++|+|||++++.+++....|+..+.......++|+++|+||+|+.+. .+..+..+ +
T Consensus 78 Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~ 156 (195)
T 3cbq_A 78 DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-L 156 (195)
T ss_dssp CCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-H
T ss_pred ecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-H
Confidence 8999998875 888899999999999999999999999999988865433357999999999999753 23333222 1
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...+++++++||+++.|++++|+++++.+
T Consensus 157 a----~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 157 A----GTLSCKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp H----HHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred H----HHhCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 1 11235789999999999999999998765
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=114.04 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=85.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.++.....|+..+.......++|+++++||+|+.+. ....+..+...
T Consensus 70 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~- 148 (195)
T 1x3s_A 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR- 148 (195)
T ss_dssp EECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-
T ss_pred eCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-
Confidence 7999999999999999999999999999999899988999998866543457899999999998543 22332222111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 149 ----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 149 ----KHSMLFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp ----HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 2345799999999999999999998754
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=114.55 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=85.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+. ....+..+...
T Consensus 72 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~ 151 (183)
T 3kkq_A 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT 151 (183)
T ss_dssp ECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH
T ss_pred ECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH
Confidence 8999999999999999999999999999999999998899888865433467899999999998653 33332222111
Q ss_pred CCccCCCCeEEEecccc-CCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCAT-TADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~-~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+ ++.|++++|+++.+.+
T Consensus 152 -----~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 152 -----KYNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp -----HHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred -----HhCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 112468999999 9999999999998765
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.2e-22 Score=116.54 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=85.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.. ..++..+...
T Consensus 57 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 136 (167)
T 1c1y_A 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR 136 (167)
T ss_dssp EECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH
Confidence 79999999999999999999999999999998998888888877654334679999999999986532 2333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. ..+++++++||+++.|++++++++.+.+.
T Consensus 137 -~---~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 137 -Q---WCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp -H---TTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred -H---ccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 1 12467999999999999999999988653
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-21 Score=115.43 Aligned_cols=106 Identities=21% Similarity=0.324 Sum_probs=85.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+.. ...+..+...
T Consensus 67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 145 (181)
T 2efe_B 67 DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ 145 (181)
T ss_dssp ECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred eCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHH
Confidence 899999999999999999999999999999999999899998886542 2578999999999986532 3333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+++++++||+++.|++++++++.+.+.
T Consensus 146 -----~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 146 -----ENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp -----HTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred -----HcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 13457999999999999999999987653
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-22 Score=119.19 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=83.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.. ...+..+...
T Consensus 60 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (181)
T 3t5g_A 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE 139 (181)
T ss_dssp ECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred eCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH
Confidence 89999999999999999999999999999999999999998888665444578999999999986532 2333222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 140 -----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 140 -----SWNAAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp -----HTTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred -----HhCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 1345799999999999999999998765
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-22 Score=116.82 Aligned_cols=106 Identities=18% Similarity=0.272 Sum_probs=83.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+. ....+..+...
T Consensus 58 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T 1u8z_A 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD 137 (168)
T ss_dssp ECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH
Confidence 8999999999999999999999999999999999998899888866543357999999999998653 23333322221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 138 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 138 -----QWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp -----HHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 1235799999999999999999998765
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-21 Score=115.03 Aligned_cols=106 Identities=22% Similarity=0.312 Sum_probs=85.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+. ....+..+...
T Consensus 61 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (170)
T 1r2q_A 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYAD 139 (170)
T ss_dssp EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred eCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHH
Confidence 799999999999999999999999999999989999889988886532 257899999999998643 22333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+++++++||+++.|++++++++.+.+.
T Consensus 140 -----~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 140 -----DNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp -----HTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred -----HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 23467999999999999999999998764
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-21 Score=115.02 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=77.2
Q ss_pred CCCCccC--chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHH
Q psy17510 1 DVGGQDK--IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~--~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~ 76 (113)
||||+++ +..++..++..+|++++|+|++++.+++....|+..+.......++|+++|+||+|+.+.. ...+...
T Consensus 58 D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~- 136 (175)
T 2nzj_A 58 DTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA- 136 (175)
T ss_dssp CCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-
T ss_pred ecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-
Confidence 8999988 5677888999999999999999999999998998888664334579999999999997542 2322221
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+. ...+++++++||++|.|++++|+++.+.+
T Consensus 137 ~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 137 CA----VVFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp HH----HHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HH----HHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 11 11235799999999999999999998765
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=113.00 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=86.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++|+||+|+.+. ....+..+...
T Consensus 72 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 151 (187)
T 2a9k_A 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE 151 (187)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH
Confidence 8999999999999999999999999999999999999899888866543357999999999998653 23333332221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 152 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 152 -----QWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp -----HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 2345799999999999999999998764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.6e-22 Score=117.54 Aligned_cols=106 Identities=19% Similarity=0.304 Sum_probs=85.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.++.....|+..+.+.....++|+++++||+|+.+.. ...+. ..+.
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~ 141 (181)
T 2fn4_A 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEA-SAFG 141 (181)
T ss_dssp ECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHH-HHHH
T ss_pred ECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHH-HHHH
Confidence 89999999999999999999999999999999999988998888554334678999999999986532 22222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++++++.+.+
T Consensus 142 ----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 142 ----ASHHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp ----HHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----HHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 12356799999999999999999998764
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.9e-21 Score=113.40 Aligned_cols=105 Identities=21% Similarity=0.296 Sum_probs=70.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+.. +..+..+...
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 141 (183)
T 2fu5_C 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL 141 (183)
T ss_dssp EC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH
T ss_pred cCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHH
Confidence 899999999999999999999999999999989999888998886532 2578999999999997532 3333222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 142 -----~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 142 -----DYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp -----HHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred -----HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1235799999999999999999998754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=113.76 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=86.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++|+||+|+.+. ....+..+...
T Consensus 68 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 147 (206)
T 2bov_A 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE 147 (206)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred cCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH
Confidence 8999999999999999999999999999999999999999888876543457999999999998653 23333322221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 148 -----~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 148 -----QWNVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp -----HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -----HhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1235799999999999999999998754
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=113.04 Aligned_cols=106 Identities=17% Similarity=0.266 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|+|++++.++.....|+..+.......++|+++++||+|+.+. ...++..+...
T Consensus 76 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 155 (195)
T 3bc1_A 76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE 155 (195)
T ss_dssp EECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH
Confidence 7999999999999999999999999999999999988899888866443357899999999998653 23333222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|+++++++|.+.+
T Consensus 156 -----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 156 -----KYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp -----HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999998754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-21 Score=114.72 Aligned_cols=105 Identities=21% Similarity=0.331 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+. ...++..+...
T Consensus 70 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 148 (179)
T 1z0f_A 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAE 148 (179)
T ss_dssp ECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 899999999999999999999999999999989988888988876532 257899999999998643 22333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 149 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 -----ENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp -----HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1345799999999999999999998765
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-21 Score=113.25 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+... .....|+++++||+|+.+.. ..++. ..+.
T Consensus 61 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~-~~~~ 138 (170)
T 1z0j_A 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDA-KDYA 138 (170)
T ss_dssp EECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHH-HHHH
T ss_pred cCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHH-HHHH
Confidence 79999999999999999999999999999998998888888888653 23678999999999986532 22222 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...+++++++||+++.|++++++++.+.+.
T Consensus 139 ----~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 139 ----DSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp ----HHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ----HHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 113467999999999999999999988753
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-20 Score=111.34 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=86.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++|+||+|+.+. ...++..+...
T Consensus 78 Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~ 156 (192)
T 2fg5_A 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE 156 (192)
T ss_dssp EECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred cCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 799999999999999999999999999999999999889988886532 257899999999998642 23333333221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+++++++||+++.|++++++++.+.+.
T Consensus 157 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 157 -----SIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp -----TTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred -----HcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 23568999999999999999999988653
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-21 Score=116.73 Aligned_cols=105 Identities=22% Similarity=0.333 Sum_probs=84.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+... ..+... +.
T Consensus 71 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~ 148 (196)
T 3tkl_A 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKE-FA 148 (196)
T ss_dssp EECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHH-HH
T ss_pred ECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHH-HH
Confidence 799999999999999999999999999999999998888988885532 25789999999999875432 222211 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 149 ----~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 149 ----DSLGIPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp ----HHTTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11234689999999999999999998764
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-21 Score=117.54 Aligned_cols=105 Identities=24% Similarity=0.369 Sum_probs=84.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+. ....+..+. .
T Consensus 76 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-~ 153 (191)
T 2a5j_A 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAF-A 153 (191)
T ss_dssp CCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-H
T ss_pred ECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHH-H
Confidence 899999999999999999999999999999999998888988886532 257899999999998653 223222221 1
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 154 ----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 154 ----REHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp ----HHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11245789999999999999999998754
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-22 Score=120.44 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=83.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++|+||+|+.+.. ...+... +.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~ 156 (201)
T 3oes_A 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK-LA 156 (201)
T ss_dssp EECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH-HH
T ss_pred ECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH-HH
Confidence 89999999999999999999999999999999999999999998775444678999999999986432 2222211 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..+++++++||+++.|++++|+++.+.+
T Consensus 157 ~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 157 E----SWGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp H----HHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred H----HhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 1234799999999999999999998764
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.3e-22 Score=116.59 Aligned_cols=106 Identities=16% Similarity=0.243 Sum_probs=84.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+.. ...+..+ +.
T Consensus 57 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~ 135 (167)
T 1kao_A 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA-LA 135 (167)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH-HH
T ss_pred ECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH-HH
Confidence 89999999999999999999999999999998999888888888664334579999999999986432 2222221 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..+++++++||+++.|++++++++.+.+
T Consensus 136 ~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 136 E----EWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp H----HHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred H----HhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 1 1234689999999999999999998765
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-20 Score=110.05 Aligned_cols=107 Identities=16% Similarity=0.228 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC---CCCCeEEEEEeCCCCCCC-CCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPDA-MKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~-~~~~~~~~~ 76 (113)
||||+++++.++..++..+|++++|+|++++.+++....|+..+..... ..++|+++++||+|+.+. ....+..+.
T Consensus 62 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~ 141 (177)
T 1wms_A 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAW 141 (177)
T ss_dssp ECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHH
T ss_pred eCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHH
Confidence 8999999999999999999999999999999888888888887754321 257899999999998632 333333332
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... ...++++++||+++.|++++|+++.+.+
T Consensus 142 ~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 142 CRD----NGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp HHH----TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHh----cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 220 2345799999999999999999998764
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-21 Score=119.34 Aligned_cols=105 Identities=20% Similarity=0.319 Sum_probs=83.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||+++++.++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+. ....+..+ +.
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~ 158 (201)
T 2ew1_A 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEE-FS 158 (201)
T ss_dssp EECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHH-HH
T ss_pred ECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-HH
Confidence 799999999999999999999999999999999988888988876532 257899999999998643 22332222 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 159 ----~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 159 ----EAQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp ----HHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11235689999999999999999998654
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-21 Score=118.18 Aligned_cols=106 Identities=16% Similarity=0.127 Sum_probs=81.6
Q ss_pred CCCCccC-chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHh
Q psy17510 1 DVGGQDK-IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~-~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~ 77 (113)
||+|++. ++.+...|+..++++++|||++++.+++....|+..+.+.....++|+++|+||+|+.+. ....+. ..+
T Consensus 93 Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~-~~~ 171 (211)
T 2g3y_A 93 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RAC 171 (211)
T ss_dssp CCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHH
T ss_pred ecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH-HHH
Confidence 7889887 566777889999999999999999999999889888765433357999999999998643 222221 111
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...++++++|||++|.|++++|+++++.+
T Consensus 172 a----~~~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 172 A----VVFDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp H----HHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred H----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 11235789999999999999999998765
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-21 Score=116.15 Aligned_cols=105 Identities=18% Similarity=0.290 Sum_probs=76.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||+++++.++..++.++|++++|+|++++.+++....|+..+..... .++|+++++||+|+.+.. ...+..+...
T Consensus 66 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 144 (180)
T 2g6b_A 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK 144 (180)
T ss_dssp ECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH
Confidence 8999999999999999999999999999999898888888888765322 578999999999997532 2222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 145 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 145 -----EYGLPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp -----HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999998764
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-21 Score=116.87 Aligned_cols=107 Identities=20% Similarity=0.272 Sum_probs=83.0
Q ss_pred CCCCccCch-hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHh
Q psy17510 1 DVGGQDKIR-PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~-~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~ 77 (113)
||||++++. .++..+++.+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.. ...+. +.+
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~ 153 (189)
T 1z06_A 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA-QKF 153 (189)
T ss_dssp ECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHH-HHH
T ss_pred ECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHH-HHH
Confidence 899999998 89999999999999999999999999888898888665334679999999999986532 22222 222
Q ss_pred CCCccCCCCeEEEeccccCC---CCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTA---DGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~---~~i~~~~~~l~~~~~ 112 (113)
.. ..+++++++||+++ .|+.++|++|.+.+.
T Consensus 154 ~~----~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 154 AD----THSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HH----HTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred HH----HcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 11 13356899999999 999999999987653
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-20 Score=110.43 Aligned_cols=102 Identities=11% Similarity=0.170 Sum_probs=79.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC----CCCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD----AMKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----~~~~~~~~~~ 76 (113)
||+|+++++ ++.++|++++|||++++.+++....|+..+.......+.|+++++||+|+.+ ..+..+..+.
T Consensus 73 Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~ 147 (184)
T 3ihw_A 73 DEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKL 147 (184)
T ss_dssp ECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHH
T ss_pred ECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHH
Confidence 799999887 7788999999999999999999999999997754345789999999999842 2333332222
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... ...+++++|||+++.|++++|+++++.+
T Consensus 148 ~~~----~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 148 STD----LKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp HHH----TTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HHH----cCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 111 1135789999999999999999998764
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-21 Score=126.23 Aligned_cols=111 Identities=28% Similarity=0.453 Sum_probs=88.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---- 66 (113)
|||||++++++|.+|+.+++++|||+|+++ ..++.....|+..+...+...+.|+++++||+|+.+
T Consensus 199 Dt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~ 278 (353)
T 1cip_A 199 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 278 (353)
T ss_dssp EECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHT
T ss_pred eCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhcc
Confidence 899999999999999999999999999998 567999999999998776667899999999999842
Q ss_pred -------------CCCHHHHHHHhC-----CCcc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 67 -------------AMKPHEIQEKLG-----LTRI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 67 -------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..+..+... .... ....+++++|||+++.|+.++|+++.+.+
T Consensus 279 ~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 279 KSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp TSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 123333322221 1111 13578899999999999999999988654
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-20 Score=111.73 Aligned_cols=105 Identities=21% Similarity=0.346 Sum_probs=84.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||+++++.++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+.. ...+..+ +.
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~ 140 (206)
T 2bcg_Y 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKE-FA 140 (206)
T ss_dssp CCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHH-HH
T ss_pred eCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-HH
Confidence 899999999999999999999999999999999999989988886532 2578999999999997632 2222222 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 141 ----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 141 ----DANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp ----HHTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11345789999999999999999998754
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-20 Score=111.59 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=81.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDA------------ 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------ 67 (113)
||||+++++.++..++.++|++++|+|++++.+++... .|+..+... ..++|+++++||+|+.+.
T Consensus 72 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 149 (194)
T 2atx_A 72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKE 149 (194)
T ss_dssp CCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTC
T ss_pred ECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccC
Confidence 89999999999999999999999999999999998886 788877653 247999999999999653
Q ss_pred --CCHHHHHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 --MKPHEIQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+..+... ..++ +++++||+++.|++++|+++.+.+
T Consensus 150 ~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 150 KPICVEQGQKLAK-----EIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CCCCHHHHHHHHH-----HHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHH-----HcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 12221111110 1122 689999999999999999998764
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-21 Score=119.78 Aligned_cols=106 Identities=18% Similarity=0.305 Sum_probs=84.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++|+|+|++++.+++....|+..+.......++|+++|+||+|+.+. ....+..+...
T Consensus 90 Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~ 169 (217)
T 2f7s_A 90 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD 169 (217)
T ss_dssp EEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH
Confidence 7999999999999999999999999999999999988899888865433367999999999998653 22222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 170 -----~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 170 -----KYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp -----HTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -----HCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 1235689999999999999999998754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=110.67 Aligned_cols=105 Identities=23% Similarity=0.335 Sum_probs=82.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+.. ...+..+ +..
T Consensus 58 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~ 135 (170)
T 1g16_A 58 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEA-LAK 135 (170)
T ss_dssp CCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHH-HHH
T ss_pred eCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHH-HHH
Confidence 899999999999999999999999999999888888888988876532 2578999999999985432 2222221 111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 136 ----~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 136 ----ELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp ----HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999998754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-20 Score=109.19 Aligned_cols=106 Identities=18% Similarity=0.289 Sum_probs=84.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+.. ...+..+ +..
T Consensus 57 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~ 135 (166)
T 2ce2_X 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQD-LAR 135 (166)
T ss_dssp ECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHH-HHH
T ss_pred ECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHH-HHH
Confidence 89999999999999999999999999999998998888888887654333479999999999987532 2222222 111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 136 ----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 136 ----SYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ----HHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999998765
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-21 Score=117.82 Aligned_cols=105 Identities=18% Similarity=0.293 Sum_probs=84.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+.. ...+... +.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~ 155 (191)
T 3dz8_A 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQL-LA 155 (191)
T ss_dssp CHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHH-HH
T ss_pred eCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-HH
Confidence 899999999999999999999999999999999998888988886532 3578999999999986532 2222211 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..+++++++||+++.|++++|+++.+.+
T Consensus 156 ~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 156 E----QLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp H----HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred H----HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 1234789999999999999999998764
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-21 Score=115.43 Aligned_cols=105 Identities=21% Similarity=0.324 Sum_probs=84.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+. ....+..+..
T Consensus 65 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~- 142 (186)
T 2bme_A 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA- 142 (186)
T ss_dssp EECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-
T ss_pred eCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-
Confidence 799999999999999999999999999999999998888988775432 257899999999998643 2223322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 143 ----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 143 ----QENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp ----HHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 12346899999999999999999998754
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=113.18 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=76.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCC-C--CCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPD-A--MKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~-~--~~~~~~~~ 75 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+..... ..++|+++|+||+|+.+ . ....+..+
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~ 158 (208)
T 2yc2_C 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQD 158 (208)
T ss_dssp ETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHH
T ss_pred ECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHH
Confidence 8999999999999999999999999999999999999999988865432 14789999999999975 2 33333322
Q ss_pred HhCCCccCCCCeEEEeccccC-CCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATT-ADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~-~~~i~~~~~~l~~~~ 111 (113)
... ..+++++++||++ +.|++++|+++.+.+
T Consensus 159 ~~~-----~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 159 WAT-----TNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp HHH-----HTTCEEEECCC-------CHHHHHHHHHH
T ss_pred HHH-----HcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 211 1236799999999 999999999998754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-21 Score=115.64 Aligned_cols=104 Identities=23% Similarity=0.359 Sum_probs=83.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.++.....|+..+... ..++|+++|+||+|+.+.. ...+......
T Consensus 64 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 141 (181)
T 3tw8_B 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAG 141 (181)
T ss_dssp EETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred cCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHH
Confidence 79999999999999999999999999999999999988999888653 3579999999999986532 2222221111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 142 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 142 -----QMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp -----HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999998754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-21 Score=115.58 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=83.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||+++++.++..++..+|++++|+|++++.+++....|+..+.... ..++|+++|+||+|+.+.. ...+..+...
T Consensus 77 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 155 (189)
T 2gf9_A 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLAD 155 (189)
T ss_dssp ECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred eCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHH
Confidence 899999999999999999999999999999989988888988886532 2578999999999986532 2222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 156 -----~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 156 -----DLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp -----HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1234799999999999999999998764
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-21 Score=118.89 Aligned_cols=105 Identities=17% Similarity=0.316 Sum_probs=81.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++|+|+|++++.+++....|+..+.... ..++|+++|+||+|+.+. ....+..+. .
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-~ 145 (223)
T 3cpj_B 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTF-A 145 (223)
T ss_dssp CCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHH-H
T ss_pred ECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHH-H
Confidence 899999999999999999999999999999999999999998886532 257899999999998653 233332221 1
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 146 ----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 146 ----QENQLLFTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp ----HHTTCEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12346799999999999999999998765
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-20 Score=114.33 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=80.9
Q ss_pred CCCCccCchhhH---HhhhcCCcEEEEEEECCCh--hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HH
Q psy17510 1 DVGGQDKIRPLW---RHYYTGTQGLIFVVDCADR--DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PH 71 (113)
Q Consensus 1 D~~G~~~~~~~~---~~~~~~~~~vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~ 71 (113)
||||+++|..+. ..++.++|++|+|||++++ .++.....|+..+... ..+.|+++|+||+|+.+... ..
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~ 152 (196)
T 3llu_A 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQR 152 (196)
T ss_dssp ECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHH
T ss_pred ECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHh
Confidence 899999998776 8899999999999999986 5666667777776432 35899999999999865211 11
Q ss_pred HHHH----HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQE----KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~----~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++.. .+........++++++|||++ .|++++|+.+++.+
T Consensus 153 ~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 153 DIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 2221 222222224678999999999 99999999998865
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-20 Score=110.04 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=77.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+. ...++..+...
T Consensus 61 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (170)
T 1z08_A 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE 139 (170)
T ss_dssp ECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH
Confidence 899999999999999999999999999999989998888888775431 246899999999998653 23333322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 140 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 140 -----SVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp -----HTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -----HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 1346789999999999999999998765
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.2e-21 Score=115.01 Aligned_cols=105 Identities=16% Similarity=0.292 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++|+|+|++++.++.....|+..+.... ..++|+++++||+|+.+. ....+.... .
T Consensus 80 Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~ 157 (193)
T 2oil_A 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMF-A 157 (193)
T ss_dssp EESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-H
T ss_pred eCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHH-H
Confidence 799999999999999999999999999999989988889998886542 257899999999998653 222322221 1
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 158 ----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 158 ----ENNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp ----HHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12346799999999999999999998754
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-21 Score=115.67 Aligned_cols=105 Identities=17% Similarity=0.270 Sum_probs=83.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++|+|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+.. ...+..+...
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 141 (203)
T 1zbd_A 63 DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLAD 141 (203)
T ss_dssp EECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHH
T ss_pred ECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHH
Confidence 799999999999999999999999999999989998888988886532 2578999999999997632 2222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|++|.+.+
T Consensus 142 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 142 -----HLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp -----HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred -----HCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1234789999999999999999998654
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=115.57 Aligned_cols=104 Identities=12% Similarity=0.129 Sum_probs=82.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHH-HHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE-ARQELHRIINDREMRDAIILIFANKQDLPDA------------ 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------ 67 (113)
||+|++++..++..++.++|++|+|||++++.++.. ...|+..+... ..+.|+++|+||+|+.+.
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 158 (214)
T 3q3j_B 81 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQ 158 (214)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTC
T ss_pred ECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhccccc
Confidence 799999999999999999999999999999999998 57888888654 257999999999998642
Q ss_pred --CCHHHHHHHhCCCccCCCCe-EEEeccccCCCC-HHHHHHHHHhhc
Q psy17510 68 --MKPHEIQEKLGLTRIRDRNW-YVQPSCATTADG-LYEGLTWLTSNH 111 (113)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~-i~~~~~~l~~~~ 111 (113)
....+..+. . ...++ ++++|||+++.| ++++|+++++.+
T Consensus 159 ~~v~~~~~~~~-~----~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 159 APISYEQGCAI-A----KQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp CCCCHHHHHHH-H----HHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHH-H----HHcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 222222111 1 11234 689999999998 999999998764
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-21 Score=116.81 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=83.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+.... ..++|+++|+||+|+.+. ...... ..+.
T Consensus 67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~ 144 (218)
T 4djt_A 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLV-MEVL 144 (218)
T ss_dssp EECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHH-HHHT
T ss_pred ecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHH-HHHH
Confidence 899999999999999999999999999999999988888888875532 245899999999998753 222222 2222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 145 ----~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 145 ----KGKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp ----TTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred ----HHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 23456899999999999999999998764
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=112.41 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=84.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++|+|+|++++.+++....|+..+.... ..++|+++|+||+|+.+.. ...+..+ +.
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~ 158 (192)
T 2il1_A 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEK-FA 158 (192)
T ss_dssp EECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHH-HH
T ss_pred eCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHH-HH
Confidence 799999999999999999999999999999989988888887775432 2578999999999986532 2333222 22
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ..+++++++||+++.|++++|+++.+.+
T Consensus 159 ~~---~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 159 QQ---ITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp HT---STTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred Hh---cCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11 1256899999999999999999998764
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=110.59 Aligned_cols=106 Identities=17% Similarity=0.266 Sum_probs=73.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+. ....+..+...
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~- 153 (190)
T 3con_A 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK- 153 (190)
T ss_dssp ECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-
T ss_pred ECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-
Confidence 8999999999999999999999999999999898888888887765433357899999999998652 23333222211
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 154 ----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 154 ----SYGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp ----HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999998754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=109.31 Aligned_cols=103 Identities=23% Similarity=0.338 Sum_probs=83.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC-CCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD-AMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.++.....|+..+... .+.|+++|+||+|... .....+..+...
T Consensus 99 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~- 174 (208)
T 3clv_A 99 DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNKFQVDILEVQKYAQ- 174 (208)
T ss_dssp ECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-CCSCHHHHHHHHH-
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcccccCCHHHHHHHHH-
Confidence 89999999999999999999999999999998999888999888654 3499999999999432 233344433222
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 175 ----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 175 ----DNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp ----HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 1345899999999999999999998754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=108.62 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=74.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc---CCCCCeEEEEEeCCCCCCC---CCHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDA---MKPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~---~~~~~~~ 74 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ...++|+++++||+|+.+. ....+..
T Consensus 64 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~ 143 (182)
T 1ky3_A 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ 143 (182)
T ss_dssp CCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH
T ss_pred ECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHH
Confidence 899999999999999999999999999999989988888888775432 1257899999999998542 2233332
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.... ...++++++||+++.|++++|+++.+.+
T Consensus 144 ~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 144 ELAKS----LGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp HHHHH----TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHh----cCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 22110 2345799999999999999999998754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-20 Score=111.49 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=81.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCC----CCHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDA----MKPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~ 75 (113)
||||++++..++..++.++|++++|+|++++.++... ..|+..+... ..++|+++|+||+|+.+. ....+..+
T Consensus 77 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 154 (194)
T 3reg_A 77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDD 154 (194)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHH
T ss_pred ECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHH
Confidence 8999999999999999999999999999999999886 6677776543 357999999999998642 22322222
Q ss_pred HhCCCccCCCCeE-EEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWY-VQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... ..+++ ++++||+++.|++++|+++.+.+
T Consensus 155 ~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 155 LCQ-----KLGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp HHH-----HHTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHH-----hcCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 111 11233 88999999999999999998765
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-21 Score=117.12 Aligned_cols=105 Identities=20% Similarity=0.310 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++|+|+|++++.+++....|+..+.... ..++|+++++||+|+.+. ....+..+..
T Consensus 80 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~- 157 (200)
T 2o52_A 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA- 157 (200)
T ss_dssp CCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-
T ss_pred cCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHH-
Confidence 899999999999999999999999999999999998889988876532 257899999999998643 2222322211
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+++++++||+++.|++++|+++.+.+
T Consensus 158 ----~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 158 ----QENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp ----HHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12346799999999999999999998754
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-21 Score=114.14 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=81.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-CCCCe-EEEEEeCCCCCCC--CCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAI-ILIFANKQDLPDA--MKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p-~ilv~nK~D~~~~--~~~~~~~~~ 76 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+..... ..+.| +++++||+|+.+. ...++..+.
T Consensus 62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~ 141 (178)
T 2hxs_A 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRF 141 (178)
T ss_dssp ECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred ECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHH
Confidence 8999999999999999999999999999999898888888887754210 12445 8999999998653 223222221
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ..+++++++||+++.|++++|+++.+.+
T Consensus 142 ~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 142 CQ-----ENGFSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp HH-----HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HH-----HcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11 1235789999999999999999998765
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-20 Score=110.08 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=80.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-----------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAM----------- 68 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----------- 68 (113)
||||+++++.++..++.++|++++|+|++++.+++... .|+..+... ..++|+++++||+|+.+..
T Consensus 62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 139 (182)
T 3bwd_D 62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVP 139 (182)
T ss_dssp CCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCC
T ss_pred ECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCC
Confidence 89999999999999999999999999999999998886 688777553 2478999999999985431
Q ss_pred -CHHHHHHHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 -KPHEIQEKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 -~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+..+ +. ...+ .+++++||+++.|++++|+++.+.+
T Consensus 140 v~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 140 ITTVQGEE-LK----KLIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp CCHHHHHH-HH----HHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHH-HH----HHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1111111 11 0112 3789999999999999999998765
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-21 Score=114.12 Aligned_cols=106 Identities=20% Similarity=0.296 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++.++|++++|+|++++.+++....|+..+.... ..++|+++++||+|+.+.. ...+......
T Consensus 69 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 147 (179)
T 2y8e_A 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 147 (179)
T ss_dssp EECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHH
Confidence 799999999999999999999999999999889988888988876532 2578999999999986432 2222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+++++++||+++.|++++++++.+.+.
T Consensus 148 -----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 148 -----ELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp -----HHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred -----HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 12457999999999999999999988653
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-20 Score=111.64 Aligned_cols=106 Identities=21% Similarity=0.321 Sum_probs=81.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC--------CCCHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD--------AMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--------~~~~~~ 72 (113)
||||++++..++..++..+|++|+|+|++++.+++....|+..+.... ..++|+++|+||+|+.+ .....+
T Consensus 83 Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~ 161 (199)
T 2p5s_A 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHF 161 (199)
T ss_dssp ECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHH
T ss_pred ECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHH
Confidence 899999999999999999999999999999989998888888775431 24789999999999852 112221
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. +.+. ...+++++++||+++.|++++|+++.+.+.
T Consensus 162 ~-~~~~----~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 162 G-EKLA----MTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp H-HHHH----HHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred H-HHHH----HHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1 1111 112457999999999999999999988653
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-20 Score=109.09 Aligned_cols=104 Identities=20% Similarity=0.331 Sum_probs=83.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... .+.|+++++||+|+.+. ....+..+...
T Consensus 60 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T 1z2a_A 60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK 137 (168)
T ss_dssp CCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred cCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH
Confidence 899999999999999999999999999999988988888988886542 57899999999998653 23333222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 138 -----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 138 -----RLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp -----HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred -----HcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 1235789999999999999999998764
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-21 Score=118.76 Aligned_cols=103 Identities=23% Similarity=0.364 Sum_probs=76.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-----PHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-----~~~~~~ 75 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++|+||+|+.+... ...+.+
T Consensus 88 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~ 166 (199)
T 3l0i_B 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 166 (199)
T ss_dssp CCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHH
T ss_pred ECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886542 24789999999999865321 222333
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. .+++++++||+++.|++++|++|.+.+.
T Consensus 167 ~--------~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 167 S--------LGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp T--------TTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred H--------cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2 2346889999999999999999998764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-21 Score=112.98 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=82.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc-CCCCCeEEEEEeCCCCCCCC--CHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAM--KPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~ 77 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.+.. ...++|+++++||+|+.+.. ...+... +
T Consensus 57 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-~ 135 (172)
T 2erx_A 57 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-L 135 (172)
T ss_dssp ECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-H
T ss_pred ECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-H
Confidence 899999999999999999999999999999888888888877665421 12478999999999986532 2222211 1
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. ...+++++++||+++.|++++++++.+.+.
T Consensus 136 ~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 136 A----RTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp H----HHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred H----HHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 1 112357899999999999999999988653
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-20 Score=122.33 Aligned_cols=111 Identities=24% Similarity=0.424 Sum_probs=80.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---- 66 (113)
|||||++++++|.+|+.+++++|||+|+++ ..++.....|+..+...+...+.|+++++||+|+.+
T Consensus 207 Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~ 286 (362)
T 1zcb_A 207 DVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQ 286 (362)
T ss_dssp EECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTT
T ss_pred eccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhcc
Confidence 899999999999999999999999999998 678999999999998766567899999999999742
Q ss_pred -------------C-CCHHHHHHHh-----CCCccC-CCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 67 -------------A-MKPHEIQEKL-----GLTRIR-DRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 67 -------------~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .+..+..+.. ...... ...+.+++|||+++.|+.++|+++.+.+
T Consensus 287 ~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 287 VVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp TCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 1 2333332221 111111 3467899999999999999999987654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-19 Score=108.57 Aligned_cols=111 Identities=22% Similarity=0.317 Sum_probs=77.3
Q ss_pred CCCCccCchh-hHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcC--cCCCCCeEEEEEeCCCCCCCCCHHHHHHH
Q psy17510 1 DVGGQDKIRP-LWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIIND--REMRDAIILIFANKQDLPDAMKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~-~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~~~~~~~~~~~ 76 (113)
||||+++++. ++..|+.++|++++|+|+++.. ++.....++..+... ....++|+++++||+|+.+......+.+.
T Consensus 60 Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 139 (214)
T 2fh5_B 60 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQ 139 (214)
T ss_dssp ECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred ECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHH
Confidence 8999999998 8999999999999999998843 455555544444321 11246899999999999776544332221
Q ss_pred hC-----------------------CCccC-----------CCCeEEEeccccCC------CCHHHHHHHHHhhc
Q psy17510 77 LG-----------------------LTRIR-----------DRNWYVQPSCATTA------DGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~-----------------------~~~~~-----------~~~~~~~~~sa~~~------~~i~~~~~~l~~~~ 111 (113)
+. ..... ...+++++|||+++ .|++++|++|.+.+
T Consensus 140 l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 140 LEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp HHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred HHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 00110 11678999999999 99999999998753
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-20 Score=111.44 Aligned_cols=105 Identities=23% Similarity=0.338 Sum_probs=82.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+.... ..++|+++|+||+|+.+.. ...+..+ +..
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~ 152 (213)
T 3cph_A 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEA-LAK 152 (213)
T ss_dssp CCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHH-HHH
T ss_pred eCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHH-HHH
Confidence 899999999999999999999999999999888888888888876532 2478999999999984322 2222221 111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++|+++.+.+
T Consensus 153 ----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 153 ----ELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp ----HHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ----HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1134689999999999999999998654
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-20 Score=112.14 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=83.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC---CCCCeEEEEEeCCCCCCCC-CHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPDAM-KPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~~-~~~~~~~~ 76 (113)
||||++++..++..++..+|++|+|+|++++.++.....|+..+..... ..++|+++++||+|+.+.. ...+..+.
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 142 (207)
T 1vg8_A 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142 (207)
T ss_dssp EECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHH
T ss_pred eCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHH
Confidence 7999999999999999999999999999999888888888877754321 1468999999999987432 23333222
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ...+++++++||+++.|++++|++|.+.+
T Consensus 143 ~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 143 CY----SKNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp HH----HTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HH----hcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11 02455799999999999999999998754
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-20 Score=115.08 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=84.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||++++..++..++.++|++++|+|++++.++.....|+..+... ..++|+++|+||+|+.+.....+ ...
T Consensus 70 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~-----~~~ 142 (221)
T 3gj0_A 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAK-----SIV 142 (221)
T ss_dssp EECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCSSCGG-----GCC
T ss_pred eCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCccccccccHH-----HHH
Confidence 79999999999999999999999999999999999988999888664 25789999999999865332111 111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+++++++||+++.|++++|+++.+.+
T Consensus 143 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 143 FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp HHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1122345799999999999999999998764
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.6e-20 Score=110.50 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=81.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-CCCCeEEEEEeCCCCCCC-CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDA-MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~ 78 (113)
||||++++..++..++..+|++++|+|++++.+++....|+..+..... ..+.|+++|+||+|+.+. ....+... +.
T Consensus 62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~ 140 (199)
T 2gf0_A 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA-VA 140 (199)
T ss_dssp ECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH-HH
T ss_pred eCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH-HH
Confidence 8999999999999999999999999999998888887777665543211 246899999999998753 22222221 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..+++++++||+++.|++++++++.+.+
T Consensus 141 ~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 141 Q----EWKCAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp H----HHTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred H----HhCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 1 1235789999999999999999998765
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-20 Score=114.01 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=82.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||||++++..++..++.++|++++|+|++++.+++... .|+..+.... .++|+++|+||+|+.+.....+.......
T Consensus 84 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 161 (204)
T 4gzl_A 84 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKL 161 (204)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTC
T ss_pred ECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhcccc
Confidence 89999999999999999999999999999999998886 7777775532 57999999999998653211111111100
Q ss_pred C---------ccCC-CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 T---------RIRD-RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~---------~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .... ...+++++||+++.|++++|+++.+.+
T Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0 0001 123699999999999999999998764
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=108.96 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=81.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG- 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~- 78 (113)
||||++++..++..++.++|++++|+|++++.+++.. ..|+..+... ..++|+++++||+|+.+.....+......
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 156 (201)
T 2gco_A 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQ 156 (201)
T ss_dssp CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTC
T ss_pred ECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhccccc
Confidence 8999999999999999999999999999999888888 5677766542 25789999999999865311111110000
Q ss_pred --------CCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 --------LTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 --------~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.......+. +++++||+++.|++++++++.+.+
T Consensus 157 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 157 EPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 000011223 789999999999999999998764
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-21 Score=115.10 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=83.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||||+++ ..++..++..+|++++|+|++++.+++....|+..+.......++|+++++||+|+.+. ....+..+...
T Consensus 82 Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 160 (196)
T 2atv_A 82 DTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT 160 (196)
T ss_dssp ECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 8999998 88889999999999999999999999988888888765433467899999999998653 22222222111
Q ss_pred CCccCCCCeEEEeccccCCC-CHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTAD-GLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~-~i~~~~~~l~~~~ 111 (113)
..+++++++||+++. |++++|+++.+.+
T Consensus 161 -----~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 161 -----ELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp -----HHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred -----HhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 124579999999999 9999999998764
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=110.37 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=81.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDA------------ 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------ 67 (113)
||||+++++.++..++.++|++++|+|++++.++.... .|+..+... ..++|+++|+||+|+.+.
T Consensus 74 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 151 (201)
T 2q3h_A 74 DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKE 151 (201)
T ss_dssp ECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTC
T ss_pred ECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhccccc
Confidence 89999999999999999999999999999999999886 688877553 247999999999998642
Q ss_pred --CCHHHHHHHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 --MKPHEIQEKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+... +.. ..+ +++++|||+++.|++++|+++.+.+
T Consensus 152 ~~v~~~~~~~-~~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 152 KPVPEEAAKL-LAE----EIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp CCCCHHHHHH-HHH----HHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCHHHHHH-HHH----hcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 11111111 110 112 3789999999999999999998754
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-20 Score=115.21 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=79.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCC----------C
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAM----------K 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----------~ 69 (113)
||||+++|+.++..++.++|++++|+|++++.+++... .|+..+... ..+.|+++++||+|+.+.. .
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~ 140 (212)
T 2j0v_A 63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVIT 140 (212)
T ss_dssp CCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCC
T ss_pred ECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCC
Confidence 89999999999999999999999999999999998886 788877553 2479999999999985531 2
Q ss_pred HHHHHHHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..+ +. ...+ .+++++||+++.|++++|+++.+.+
T Consensus 141 ~~~~~~-~~----~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 141 STQGEE-LR----KQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp HHHHHH-HH----HHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHH-HH----HHcCCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 222111 11 0112 3689999999999999999998754
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=109.86 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=81.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.+++.. ..|+..+... ..++|+++++||+|+.+.....+.......
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 156 (207)
T 2fv8_A 79 DTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQ 156 (207)
T ss_dssp ECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTC
T ss_pred ECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhccc
Confidence 8999999999999999999999999999998888888 5677776542 257999999999998653211111111110
Q ss_pred Cc---------cCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TR---------IRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~---------~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ....+. +++++||+++.|++++++++.+.+
T Consensus 157 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 157 EPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 001222 789999999999999999998754
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-19 Score=104.83 Aligned_cols=102 Identities=7% Similarity=0.056 Sum_probs=74.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--cCCCCCeEEEEEeCCCCCC----CCCHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND--REMRDAIILIFANKQDLPD----AMKPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~----~~~~~~~~ 74 (113)
||||+++ ..|+.++|++++|||++++.+++....|+..+... ....++|+++++||+|+.+ .....+..
T Consensus 60 Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~ 134 (178)
T 2iwr_A 60 EEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARAR 134 (178)
T ss_dssp ECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHH
T ss_pred ECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHH
Confidence 7999987 35778899999999999999999988865444322 1125789999999999842 22333332
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.... ..+++++++||+++.|++++|+++.+.+
T Consensus 135 ~~~~~----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 135 ALXAD----MKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp HHHHH----HSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHh----hcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 22110 1246799999999999999999998754
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=111.47 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=67.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG- 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~- 78 (113)
||||++++..++..++.++|++++|+|++++.+++... .|+..+... ..++|+++|+||+|+.+.....+..+...
T Consensus 88 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 165 (214)
T 2j1l_A 88 DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGL 165 (214)
T ss_dssp EC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTC
T ss_pred ECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhccccc
Confidence 89999999999999999999999999999999998886 688777543 25789999999999865321111110000
Q ss_pred --------CCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 --------LTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 --------~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.......++ +++++||+++.|++++|+++.+.+
T Consensus 166 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 166 EPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 000011233 799999999999999999998754
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=116.14 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=77.1
Q ss_pred CCCCccCchh---hHHhhhcCCcEEEEEEECCCh--hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HH
Q psy17510 1 DVGGQDKIRP---LWRHYYTGTQGLIFVVDCADR--DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PH 71 (113)
Q Consensus 1 D~~G~~~~~~---~~~~~~~~~~~vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~ 71 (113)
|||||++|+. ++..|+++++++|+|||.+++ ........|+..+... .+++|+++++||+|+.+... .+
T Consensus 52 DTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R 129 (331)
T 3r7w_B 52 ELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQR 129 (331)
T ss_dssp ECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHH
T ss_pred ECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHH
Confidence 8999999975 468999999999999999986 2333333344444322 25799999999999975321 12
Q ss_pred HHHHHhCCCccC----CCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIR----DRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~----~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++....+....+ ..++++++|||++ .++.+.|..+++.+
T Consensus 130 ~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 130 DIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp HHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred HhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 344433333332 2578999999998 58999999998765
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=107.54 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=81.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||||+++++.++..++..+|++++|+|++++.++.... .|+..+... ..++|+++++||+|+.+.....+.......
T Consensus 59 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 136 (186)
T 1mh1_A 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKL 136 (186)
T ss_dssp CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTC
T ss_pred ECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhccccc
Confidence 89999999999999999999999999999998898886 687777553 247899999999998653111111000000
Q ss_pred ---------CccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 ---------TRIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ---------~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
......+ ++++++||+++.|++++|+++.+.+
T Consensus 137 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 137 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 0001123 3799999999999999999998765
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-21 Score=114.76 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=78.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC--CCCCeEEEEEeCCCCCCC--CCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDA--MKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~--~~~~~~~~~ 76 (113)
||+|+++++.+ ..++..+|++++|||++++.+++....|+..+..... ..++|+++++||+|+.+. .+..+..+.
T Consensus 75 Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 153 (187)
T 3c5c_A 75 DTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVAL 153 (187)
T ss_dssp ECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred ECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHH
Confidence 89999999886 5699999999999999999999999999888865311 147899999999998643 233322221
Q ss_pred hCCCccCCCCeEEEeccc-cCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCA-TTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa-~~~~~i~~~~~~l~~~~ 111 (113)
.. ..+++++++|| +++.|++++|+++++.+
T Consensus 154 ~~-----~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 154 AG-----RFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp HH-----HHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred HH-----HcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 11 12357899999 89999999999998765
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-20 Score=123.62 Aligned_cols=111 Identities=19% Similarity=0.328 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCA----------DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
||+||++++++|.+|+.+++++|+|+|++ +..+++....|+..+...+...+.|+++++||+|+.+.
T Consensus 189 DtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~ 268 (354)
T 2xtz_A 189 DVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVL 268 (354)
T ss_dssp EECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTT
T ss_pred ECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcc
Confidence 89999999999999999999999999998 67889999999999987655578999999999997321
Q ss_pred -CC----------------H--HHHHHHh-CCCc-----------cCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 -MK----------------P--HEIQEKL-GLTR-----------IRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 -~~----------------~--~~~~~~~-~~~~-----------~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. . .+-...+ ...+ .....+.+++|||+++.|++++|+++.+.+
T Consensus 269 ~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 269 DVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETL 343 (354)
T ss_dssp TSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHH
Confidence 10 0 0111111 1000 002346779999999999999999988654
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-20 Score=111.18 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=77.8
Q ss_pred CCCCccC-chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHh
Q psy17510 1 DVGGQDK-IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~-~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~ 77 (113)
||+|++. ++.++..|+..++++++|||++++.+++....|+..+.......++|+++++||+|+.+. ....+. ..+
T Consensus 62 Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~ 140 (192)
T 2cjw_A 62 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAX 140 (192)
T ss_dssp CCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHH
T ss_pred EeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHH
Confidence 7888776 556777888999999999999999999998888877754322357899999999998542 222221 111
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ...++++++|||++|.|++++|+++++.+
T Consensus 141 a----~~~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 141 A----VVFDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp H----HHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred H----HHhCCceEEeccccCCCHHHHHHHHHHHH
Confidence 1 11235789999999999999999998764
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=108.02 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=80.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDA------------ 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------ 67 (113)
||||+++|..++..++.++|++++|+|++++.+++.. ..|+..+... ..+.|+++++||+|+.+.
T Consensus 61 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 138 (184)
T 1m7b_A 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQ 138 (184)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTC
T ss_pred ECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhccc
Confidence 7999999999999999999999999999999999888 5787777543 257899999999998642
Q ss_pred --CCHHHHHHHhCCCccCCCCeEEEecccc-CCCCHHHHHHHHHhhc
Q psy17510 68 --MKPHEIQEKLGLTRIRDRNWYVQPSCAT-TADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~i~~~~~~l~~~~ 111 (113)
.+.++..+ +... ...+++++|||+ ++.|++++|+++.+.+
T Consensus 139 ~~v~~~~~~~-~~~~---~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 139 TPVSYDQGAN-MAKQ---IGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CCCCHHHHHH-HHHH---HTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH-HHHH---cCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 22222111 1100 012479999999 6899999999998764
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-19 Score=116.41 Aligned_cols=111 Identities=23% Similarity=0.437 Sum_probs=86.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCA----------DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
||+||++++++|.+|+.+++++|+|+|++ +..++.....|+..+...+...++|+++++||+|+.+.
T Consensus 173 DtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~ 252 (327)
T 3ohm_A 173 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIM 252 (327)
T ss_dssp EECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTT
T ss_pred EcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhc
Confidence 89999999999999999999999999664 56789999999999988766678999999999997431
Q ss_pred ---------------CCHHHHHH----HhC-CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 ---------------MKPHEIQE----KLG-LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 ---------------~~~~~~~~----~~~-~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+.++..+ .+. ........+.+++|||+++.|++.+|..+.+.+
T Consensus 253 ~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 253 YSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp TSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 12222222 111 111233567899999999999999999887653
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-20 Score=122.43 Aligned_cols=111 Identities=25% Similarity=0.352 Sum_probs=85.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
||+||++++++|.+|+.+++++|||+|+++ ..++.....|+..+...+...+.|+++++||+|+.+.
T Consensus 223 DtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~ 302 (402)
T 1azs_C 223 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVL 302 (402)
T ss_dssp EECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHH
T ss_pred ccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhc
Confidence 899999999999999999999999999998 7899999999999987655678999999999997321
Q ss_pred --C-C-------------------------HHHHHHHh-----CCCc----cCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 68 --M-K-------------------------PHEIQEKL-----GLTR----IRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 68 --~-~-------------------------~~~~~~~~-----~~~~----~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
. . ..+.+..+ .... -....+.+++|||+++.|+.++|.++...
T Consensus 303 ~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 303 AGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDI 382 (402)
T ss_dssp HCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHH
Confidence 0 0 01111111 1000 01135778999999999999999988764
Q ss_pred c
Q psy17510 111 H 111 (113)
Q Consensus 111 ~ 111 (113)
+
T Consensus 383 I 383 (402)
T 1azs_C 383 I 383 (402)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-19 Score=108.49 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=80.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDA------------ 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------ 67 (113)
||||+++|..++..++.++|++|+|||++++.+++.. ..|+..+... ..+.|+++|+||+|+.+.
T Consensus 82 Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 159 (205)
T 1gwn_A 82 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQ 159 (205)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTC
T ss_pred eCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhccccc
Confidence 7999999999999999999999999999999999888 6788777543 257899999999998642
Q ss_pred --CCHHHHHHHhCCCccCCCCeEEEecccc-CCCCHHHHHHHHHhhc
Q psy17510 68 --MKPHEIQEKLGLTRIRDRNWYVQPSCAT-TADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~i~~~~~~l~~~~ 111 (113)
.+.++..+ +... ...+++++|||+ ++.|++++|+++.+.+
T Consensus 160 ~~v~~~~~~~-~~~~---~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 160 TPVSYDQGAN-MAKQ---IGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CCCCHHHHHH-HHHH---HTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH-HHHH---cCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 22221111 1100 012478999999 6899999999998754
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.5e-20 Score=109.79 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=80.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR-DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||+|+++|..++..|+.+++++++|+|.+++ .+++....|+..+... ..+.|+++|+||+|+.+.............
T Consensus 62 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 139 (184)
T 2zej_A 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITK 139 (184)
T ss_dssp EECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHH
Confidence 7999999999999999999999999999986 4788888898887543 247899999999998653222111111111
Q ss_pred CccCCCCe----EEEeccccCCC-CHHHHHHHHHhhc
Q psy17510 80 TRIRDRNW----YVQPSCATTAD-GLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~----~~~~~sa~~~~-~i~~~~~~l~~~~ 111 (113)
......++ +++++||+++. |+.++++.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 140 ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp HTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 11122233 38999999997 9999999887654
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-20 Score=114.23 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=82.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH--------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPH-------- 71 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-------- 71 (113)
||||++++..++..++.++|++++|+|++++.+++... .|+..+... ..++|+++++||+|+.+.....
T Consensus 84 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 161 (204)
T 3th5_A 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKL 161 (204)
Confidence 89999999999999999999999999999988888876 677777543 2378999999999986532111
Q ss_pred -HHHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 -EIQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 -~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+............++ +++++||+++.|++++|+++.+.+
T Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 1111111112222344 789999999999999999998754
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-19 Score=115.79 Aligned_cols=111 Identities=25% Similarity=0.392 Sum_probs=86.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCA----------DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
||+||++++++|.+|+.+++++|||+|++ +..++.....|+..+...+...++|+++++||+|+.+.
T Consensus 167 DtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~ 246 (340)
T 4fid_A 167 DVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLT 246 (340)
T ss_dssp ECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHH
T ss_pred cCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcC
Confidence 89999999999999999999999999998 67789999999999988766678999999999997431
Q ss_pred --------------CCHHH----HHHHh------C-CCccCC-----------CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 --------------MKPHE----IQEKL------G-LTRIRD-----------RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 --------------~~~~~----~~~~~------~-~~~~~~-----------~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+.++ +.+.+ . ...... ..+.+++|||+++.++..+|..+.+.+
T Consensus 247 ~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 247 KVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp HSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHH
Confidence 11222 12222 1 111111 357899999999999999999887653
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=101.21 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=76.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL- 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~- 79 (113)
||||++++..++..++..+|++++|+|++++.... ...++..+.. .++|+++++||+|+.+. ...++.+.+..
T Consensus 61 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~ 134 (178)
T 2lkc_A 61 DTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQ-TVEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEY 134 (178)
T ss_dssp CCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHH-HHHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTT
T ss_pred ECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhc
Confidence 89999999999999999999999999998743222 2333444422 46899999999999763 33344443321
Q ss_pred Ccc-CC--CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRI-RD--RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~-~~--~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... .. ..++++++||+++.|++++++++.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 135 NLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp TCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 111 11 237899999999999999999998754
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-19 Score=111.65 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=78.0
Q ss_pred CCCccCchhhHHhhhc---------------------CCcEEEEEEECCCh--hhHHHHHHHHHHHHcCcCCCCCeEEEE
Q psy17510 2 VGGQDKIRPLWRHYYT---------------------GTQGLIFVVDCADR--DRIDEARQELHRIINDREMRDAIILIF 58 (113)
Q Consensus 2 ~~G~~~~~~~~~~~~~---------------------~~~~vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv 58 (113)
++|+++|+.++..|+. +||++|+|||++++ .+++....|+..+.......++|+++|
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV 204 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV 204 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 4577777777777777 79999999999998 899999899888765312257899999
Q ss_pred EeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 59 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 59 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+||+|+.+....++..+ +... ..+++++++||+++.|++++|+++++.+.
T Consensus 205 ~NK~Dl~~~~~v~~~~~-~~~~---~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 205 LTKCDEGVERYIRDAHT-FALS---KKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EECGGGBCHHHHHHHHH-HHHT---SSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEcccccccHHHHHHHH-HHHh---cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 99999854222221111 1111 13567999999999999999999988653
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-18 Score=101.63 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=75.9
Q ss_pred CCCC----------ccCchhhHHhhhcCC---cEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGG----------QDKIRPLWRHYYTGT---QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G----------~~~~~~~~~~~~~~~---~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
|||| ++.+..++..++..+ |++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+.
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 75 DVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV-QMYEFLKY----YGIPVIVIATKADKIPK 149 (195)
T ss_dssp ECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSCG
T ss_pred ECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCCh
Confidence 7999 888888888888877 999999999886655543 22222222 46899999999998764
Q ss_pred CCHH----HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 68 MKPH----EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 68 ~~~~----~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.... ++.+.+. ....++++++||+++.|++++++++.+.++
T Consensus 150 ~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 150 GKWDKHAKVVRQTLN----IDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp GGHHHHHHHHHHHHT----CCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc----ccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 3332 2222232 124568999999999999999999988764
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-18 Score=110.02 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=80.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 79 (113)
||||++++..++..++..+|++++|+|++++.++.... .|+..+... ..++|+++|+||+|+.+.....+.......
T Consensus 209 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 286 (332)
T 2wkq_A 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKL 286 (332)
T ss_dssp EECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTC
T ss_pred eCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhcccccc
Confidence 89999999999999999999999999999998988876 677777543 247999999999998542111010000000
Q ss_pred C---------ccCCCC-eEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 T---------RIRDRN-WYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~---------~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .....+ +++++|||+++.|++++|+++.+.+
T Consensus 287 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 287 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 0 001123 3799999999999999999998764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=107.73 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=75.7
Q ss_pred ccCchhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHhCCC
Q psy17510 5 QDKIRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKLGLT 80 (113)
Q Consensus 5 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~ 80 (113)
+++|+.+++.|++++|++|+|+|++++. ++.....|+..+.. .++|+++|+||+|+.+.... .+..+.+.
T Consensus 71 qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~-- 144 (301)
T 1u0l_A 71 LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS-- 144 (301)
T ss_dssp CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT--
T ss_pred ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh--
Confidence 7899999999999999999999999886 68878889887754 47999999999998653221 12222222
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.. +++++|||+++.|++++|..+...
T Consensus 145 ---~~-~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 145 ---GL-YPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp ---TT-SCEEECCTTTCTTHHHHHHHHSSS
T ss_pred ---hh-CcEEEEECCCCcCHHHHHHHhcCC
Confidence 12 579999999999999999987653
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=101.43 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=71.5
Q ss_pred CCCCc------cC----chhhHHhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC
Q psy17510 1 DVGGQ------DK----IRPLWRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAM 68 (113)
Q Consensus 1 D~~G~------~~----~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 68 (113)
||||+ ++ +..+ ..++..+|++++|+|++++.+++ ....|+..+... ..++|+++|+||+|+.+..
T Consensus 82 DtpG~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 82 DTPGLLDRAFENRNTIEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp ECTTTTTSCGGGCCHHHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--
T ss_pred ECCCCcCcccchhhhHHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCch
Confidence 89998 44 3333 44678899999999999876643 334677776542 2478999999999987543
Q ss_pred CHHH----HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 KPHE----IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ~~~~----~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... ..+.+... ....+++++|||+++.|++++|+++.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~--~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 159 SLSIDNKLLIKQILDN--VKNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp CCCHHHHHHHHHHHHH--CCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh--cCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 2211 11111110 01226899999999999999999998764
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=96.49 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCCCccC-------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHH
Q psy17510 1 DVGGQDK-------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI 73 (113)
Q Consensus 1 D~~G~~~-------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 73 (113)
||||++. +...+..++..+|++++|+|.+++.+.. ..++..+... .+.|+++++||+|+.+.. .+.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~ 127 (161)
T 2dyk_A 55 DTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LYL 127 (161)
T ss_dssp ECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGC
T ss_pred ECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--HhH
Confidence 7999987 4566777899999999999998753322 2233333222 468999999999986531 111
Q ss_pred HHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 74 QEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 74 ~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ... ..++ +++++||+++.|++++|+++.+.+
T Consensus 128 -~----~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 128 -G----PLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp -G----GGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred -H----HHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 1 111 1223 588999999999999999998875
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=98.54 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=72.5
Q ss_pred CCCC----------ccCchhhHHhhhcCC---cEEEEEEECCChhhHH--HHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGG----------QDKIRPLWRHYYTGT---QGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G----------~~~~~~~~~~~~~~~---~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
|||| ++.+..++..|+..+ +++++|+|.++..+.. ....|+.. .++|+++|+||+|+.
T Consensus 74 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 74 DLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKV 146 (195)
T ss_dssp ECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGS
T ss_pred ECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcC
Confidence 7899 777888888888877 9999999988653322 22333332 268999999999987
Q ss_pred CCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 66 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+........+...........++++++||+++.|++++|+++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 147 KMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 54333222222111000113467999999999999999999988754
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=94.60 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=72.0
Q ss_pred CCCCccCch------hhHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--C--
Q psy17510 1 DVGGQDKIR------PLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--M-- 68 (113)
Q Consensus 1 D~~G~~~~~------~~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~-- 68 (113)
||||++++. .+...|+. +++++++|+|.++.. ....|+..+.+ .++|+++++||+|+.+. .
T Consensus 56 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~ 128 (165)
T 2wji_A 56 DLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEI 128 (165)
T ss_dssp ECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCC
T ss_pred ECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhh
Confidence 899999875 45566665 899999999998743 33457666644 36899999999997432 1
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...++.+.++ ++++++||+++.|++++|+++.+.++
T Consensus 129 ~~~~~~~~~~--------~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 129 DVDKLEKILG--------VKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp CHHHHHHHHT--------SCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC--------CCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 2334444333 35889999999999999999988764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=98.74 Aligned_cols=100 Identities=17% Similarity=0.141 Sum_probs=71.2
Q ss_pred CCCCccCchhh--------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPL--------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~--------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++++... ...++..+|++++|+|.+++.+++ ...|+..+.+.. ..++|+++|+||+|+.+..
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~---- 131 (172)
T 2gj8_A 58 DTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGET---- 131 (172)
T ss_dssp ECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCCC----
T ss_pred ECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcch----
Confidence 79998764321 123688999999999999876655 346666654421 2468999999999984321
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.......+++++++||+++.|++++|+++.+.+.
T Consensus 132 ------~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 132 ------LGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp ------CEEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred ------hhhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 1111224568999999999999999999987653
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=105.91 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=79.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||+++|...+..++..+|++++|+|+++..+.....+|+..+... ...|+++++||+|+.+..... ++.+.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 89999999999999999999999999999876566666666655432 336999999999987632211 22222
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.. .....++++++||+++.|+++++++|.+.+
T Consensus 158 l~~--~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 158 TKG--TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHh--hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 211 112467899999999999999999998754
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-17 Score=105.38 Aligned_cols=108 Identities=23% Similarity=0.239 Sum_probs=76.9
Q ss_pred CCCCccCc-----hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHH---HHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKI-----RPLWRHYYTGTQGLIFVVDCADRDRIDEARQEL---HRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~-----~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++++ ..++..++.++|++++|+|++++.+++....|. ..+... ..++|+++++||+|+.+.....+
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~ 135 (307)
T 3r7w_A 58 DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREE 135 (307)
T ss_dssp EECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHH
T ss_pred ECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhH
Confidence 89999998 788899999999999999999998888876654 444322 35799999999999865211110
Q ss_pred ---HHHHhCCCccCCC---CeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 ---IQEKLGLTRIRDR---NWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ---~~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+............ .++++++||++ .|+.++|..+++.+
T Consensus 136 ~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 136 LFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 1111111111112 37899999999 88888988887653
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-16 Score=101.53 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=77.9
Q ss_pred CCCCccCch----------hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC-CCCC
Q psy17510 1 DVGGQDKIR----------PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP-DAMK 69 (113)
Q Consensus 1 D~~G~~~~~----------~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~ 69 (113)
||||+..+. ..+..++..+|++++|+|+++..+..+...|+..+.. .++|+++++||+|+. +...
T Consensus 65 DTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~ 140 (308)
T 3iev_A 65 DTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKN 140 (308)
T ss_dssp ECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGG
T ss_pred ECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHH
Confidence 899986544 5667789999999999999987777776666777754 468999999999986 3332
Q ss_pred HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..+.+.... ....+++++||+++.|++++++++.+.+
T Consensus 141 ~~~~~~~l~~~~--~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 141 VLPLIDEIHKKH--PELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp GHHHHHHHHHHC--TTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc--cCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 223322222111 1234689999999999999999998765
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.1e-17 Score=99.11 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=71.9
Q ss_pred CCCC----------ccCchhhHHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGG----------QDKIRPLWRHYYTG---TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G----------~~~~~~~~~~~~~~---~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
|||| ++.+..++..|+.. +|++++|+|.+++.+ .....++..+.. .++|+++|+||+|+.+.
T Consensus 85 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~----~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 85 DLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAP----TGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp ECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGG----GCCCEEEEEECGGGSCH
T ss_pred cCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHh----cCCCEEEEEeccccCCh
Confidence 8999 45567777777776 778999999987533 222345555533 46899999999998653
Q ss_pred CCHHHHH----HHhCCC--ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 68 MKPHEIQ----EKLGLT--RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 68 ~~~~~~~----~~~~~~--~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
....... +.+... ......++++++||+++.|+++++++|.+.+.
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 160 QESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 2221111 111110 00125678999999999999999999987653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-16 Score=96.92 Aligned_cols=105 Identities=20% Similarity=0.331 Sum_probs=81.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|+++++.++..++..++++++|+|.++..+++....|+..+... ...+.|+++++||+|+.+.. ...+ ...+.
T Consensus 60 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~-a~~l~ 137 (199)
T 2f9l_A 60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDE-ARAFA 137 (199)
T ss_dssp ECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHH-HHHHH
T ss_pred ECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHH-HHHHH
Confidence 78999999999999999999999999999988888877888776432 12468999999999986532 2222 22221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++.++++||+++.|++++++++.+.+
T Consensus 138 ----~~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 138 ----EKNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp ----HHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12345788999999999999999988754
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-17 Score=98.39 Aligned_cols=110 Identities=16% Similarity=0.119 Sum_probs=72.2
Q ss_pred CCCC-----------ccCchhhHHhhhcC-CcEEEEEEECCChhhHHHH-HHHHHH--------HHcCcCCCCCeEEEEE
Q psy17510 1 DVGG-----------QDKIRPLWRHYYTG-TQGLIFVVDCADRDRIDEA-RQELHR--------IINDREMRDAIILIFA 59 (113)
Q Consensus 1 D~~G-----------~~~~~~~~~~~~~~-~~~vi~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~p~ilv~ 59 (113)
|||| ++++..++..|+.. ++++++++++.+..++... ..|... +.......++|+++++
T Consensus 50 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 129 (190)
T 2cxx_A 50 DMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAV 129 (190)
T ss_dssp ECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEE
T ss_pred ECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEe
Confidence 7899 78888888888877 7766666666655566554 344331 1111112578999999
Q ss_pred eCCCCCCCC--CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 60 NKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 60 nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
||+|+.+.. ..+++.+.++..+. ....+++++||+++.|++++|+++.+.+
T Consensus 130 nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 130 NKLDKIKNVQEVINFLAEKFEVPLS-EIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp ECGGGCSCHHHHHHHHHHHHTCCGG-GHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ehHhccCcHHHHHHHHHHHhhhhhh-ccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 999987643 13344444443210 0123589999999999999999998764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-16 Score=104.41 Aligned_cols=106 Identities=14% Similarity=0.026 Sum_probs=75.5
Q ss_pred CCCCc----------cCchhhHH-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQ----------DKIRPLWR-HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~----------~~~~~~~~-~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||+ ++|..++. .++..+|++++|+|++++.+.++. .|+..+.. .++|+++++||+|+.+...
T Consensus 229 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 229 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp THHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCT
T ss_pred ECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcch
Confidence 78887 55665544 488899999999999987776654 56666643 5799999999999876433
Q ss_pred --HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 --PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..++.+............+++++||++|.|++++|+.+.+.+
T Consensus 304 ~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 304 STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp THHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 233333222111112356799999999999999999887643
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-15 Score=96.43 Aligned_cols=101 Identities=15% Similarity=0.053 Sum_probs=72.2
Q ss_pred CCCCccC--------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHH-HHHHcCcCCCCCeEEEEEeCCCCCCCCC-H
Q psy17510 1 DVGGQDK--------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQEL-HRIINDREMRDAIILIFANKQDLPDAMK-P 70 (113)
Q Consensus 1 D~~G~~~--------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~ 70 (113)
||||+.+ +......++..+|++++|+|++++.+.. ..|+ +.+... ..++|+++++||+|+.+... .
T Consensus 61 DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~~ 136 (301)
T 1wf3_A 61 DTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL--VGKVPILLVGNKLDAAKYPEEA 136 (301)
T ss_dssp ECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG--TTTSCEEEEEECGGGCSSHHHH
T ss_pred cCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh--cCCCCEEEEEECcccCCchHHH
Confidence 8999877 4566677899999999999998764433 3444 444321 14789999999999865322 2
Q ss_pred HHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 71 HEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+..+.+ ....+++++||+++.|++++++++.+.+
T Consensus 137 ~~~~~~~------~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 137 MKAYHEL------LPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHT------STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHh------cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 2222222 1234689999999999999999998764
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-15 Score=99.50 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=68.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~ 76 (113)
|||||++|.+.+......+|++++|+|+++........+.+..+... ...|+++++||+|+.+... .+++.+.
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~ 163 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKEF 163 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 89999999998888889999999999998642222233333333221 2358999999999976432 2233333
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+... ....++++++||+++.|+++++++|...+
T Consensus 164 l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 164 VKGT--IAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HTTS--TTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred Hhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 2211 12457899999999999999999998754
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-16 Score=107.66 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=73.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++.+..++..++..+|++++|+|+++. +....|+..+... ..++|+++|+||+|+.+.. ..++..+...
T Consensus 104 Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~--~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~ 178 (535)
T 3dpu_A 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINERFP 178 (535)
T ss_dssp CCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHH--SSSCCEEEEECCTTTCTTCCCCHHHHHHHCG
T ss_pred ECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHh--CCCCCEEEEEECCCcccccccCHHHHHHHHH
Confidence 8999999999999999999999999999865 3445677666543 2468999999999997543 3333433322
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+++++++||+++.|++++++++.+.+
T Consensus 179 -----~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 179 -----AIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp -----GGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred -----hcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 2334699999999999999999998764
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=100.30 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=77.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+..|...+..++..+|++++|+|+++....+....|.... . .++|+++++||+|+.+.. ..++.+.+...
T Consensus 79 DTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~ 152 (600)
T 2ywe_A 79 DTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV 152 (600)
T ss_dssp CCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred ECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh
Confidence 89999999999999999999999999999876655555554443 2 478999999999997643 33322222111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+.....+++++||++|.|++++++++++.+.
T Consensus 153 -lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 153 -LGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp -SCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred -hCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 1011124789999999999999999987653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=102.60 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=74.4
Q ss_pred CCCC----------ccCchhhHH-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGG----------QDKIRPLWR-HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G----------~~~~~~~~~-~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
|||| +++|..++. .++..+|++++|+|+++..+ +....|...+.. .++|+++|+||+|+.+...
T Consensus 249 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 249 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp TGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSCCCS
T ss_pred ECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhcCCCch
Confidence 8999 788887765 48899999999999987533 223455555543 5799999999999875432
Q ss_pred --HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 --PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+++.+...........++++++||++|.|++++|+++.+.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 324 STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 233333222111112346799999999999999999988654
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=89.91 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=72.5
Q ss_pred CCCCccCch------hhHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC----C
Q psy17510 1 DVGGQDKIR------PLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA----M 68 (113)
Q Consensus 1 D~~G~~~~~------~~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~ 68 (113)
||||++++. .++..|+. .++++++|+|.++ ++....|+..+.. .+.|+++++||+|+.+. .
T Consensus 60 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~ 132 (188)
T 2wjg_A 60 DLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEI 132 (188)
T ss_dssp ECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCC
T ss_pred ECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchH
Confidence 899999885 45666764 5999999999875 4555677777754 47899999999997432 1
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++.+.++ ++++++||+++.|++++|+++.+.+
T Consensus 133 ~~~~~~~~~~--------~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 133 DVDKLEKILG--------VKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp CHHHHHHHHT--------SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--------CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 2344444443 3588999999999999999998765
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-15 Score=100.85 Aligned_cols=97 Identities=18% Similarity=0.089 Sum_probs=62.4
Q ss_pred CCCCccCchhhHH--------hhhcCCcEEEEEEECCChhhHH---HHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKIRPLWR--------HYYTGTQGLIFVVDCADRDRID---EARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~~~~~~--------~~~~~~~~vi~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||++++...++ .++..+|++++|+|++++.++. ....|+..+ .++|+++|+||+|+.+...
T Consensus 287 DT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 287 DTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANAD 360 (476)
T ss_dssp C--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTH
T ss_pred ECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccc
Confidence 8999988775543 3789999999999999876654 333444443 3689999999999976443
Q ss_pred HHH--HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHE--IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
... +.+. ..++++++||+++.|++++++++.+.+
T Consensus 361 ~~~~~l~~~--------~~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 361 ALIRAIADG--------TGTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp HHHHHHHHH--------HTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred hhHHHHHhc--------CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 221 2221 013588999999999999999998764
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=100.55 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=77.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~ 77 (113)
||||+..|...+..++..+|++|+|+|+++..+......|..... .++|+++++||+|+.+.... +++.+.+
T Consensus 77 DTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~~~~v~~ei~~~l 151 (599)
T 3cb4_D 77 DTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAADPERVAEEIEDIV 151 (599)
T ss_dssp ECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHHHHHHHHT
T ss_pred ECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccccHHHHHHHHHHHh
Confidence 899999999999999999999999999988655555455544442 46899999999999764321 2333333
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+.. ..+++.+||+++.|++++++++.+.+.
T Consensus 152 g~~-----~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 152 GID-----ATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp CCC-----CTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred CCC-----cceEEEeecccCCCchhHHHHHhhcCC
Confidence 321 124789999999999999999987653
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=104.17 Aligned_cols=105 Identities=14% Similarity=0.063 Sum_probs=76.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
|||||+.|..++..++..+|++++|+|+++..... ..+++..+.. .++|+++++||+|+.+... ..++.+ .
T Consensus 58 DTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~q-t~e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~-~ 131 (537)
T 3izy_P 58 DTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQ-TVESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLA-Y 131 (537)
T ss_dssp ECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHH-HHHHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHH-T
T ss_pred ECCChHHHHHHHHHHHccCCEEEEEEECCCCccHH-HHHHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHh-h
Confidence 89999999999999999999999999998754333 2334444432 4689999999999865321 122222 2
Q ss_pred CCCc-cCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTR-IRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~-~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... .....++++++||++|.|++++++++...+
T Consensus 132 ~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 132 DVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp TSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred hhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 2111 112357899999999999999999988654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-16 Score=93.38 Aligned_cols=106 Identities=17% Similarity=0.305 Sum_probs=81.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~ 79 (113)
||+|++++..++..+++.++++++|+|.++..+++....|+..+.... ..+.|+++++||+|+.+... ..+....+.
T Consensus 84 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~- 161 (191)
T 1oix_A 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFA- 161 (191)
T ss_dssp EECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-
T ss_pred ECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-
Confidence 689999999999999999999999999998888887777877664321 24689999999999864322 112222222
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++.++++||+++.|++++++++.+.+
T Consensus 162 ---~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 162 ---EKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ---HHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---HHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 12346788999999999999999998764
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-15 Score=93.97 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCCccCch------hhHHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC----C
Q psy17510 1 DVGGQDKIR------PLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA----M 68 (113)
Q Consensus 1 D~~G~~~~~------~~~~~~~~--~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~ 68 (113)
||||+.++. .+++.|+. .+|++++|+|+++.. ....|..++.. .++|+++++||+|+.+. .
T Consensus 55 DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---~~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~ 127 (272)
T 3b1v_A 55 DLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE---RNLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKI 127 (272)
T ss_dssp ECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCC
T ss_pred ECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH---hHHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHH
Confidence 899999886 46666775 699999999998753 33456666644 47899999999997432 2
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+.+.++ ++++++||+++.|++++|+++.+.+
T Consensus 128 ~~~~l~~~lg--------~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 128 NVDKLSYHLG--------VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CHHHHHHHHT--------SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred HHHHHHHHcC--------CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 2344444443 4688999999999999999998754
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-15 Score=101.29 Aligned_cols=103 Identities=21% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD---RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP------- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~------- 70 (113)
||||++.|..++..++..+|++|+|+|+++ +.+++. +..+.. .++|+++++||+|+.+....
T Consensus 76 DTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~----l~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 76 DTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEA----LNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp CCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHH----HHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHH----HHHHHH----cCCeEEEEecccccccccccccCCchH
Confidence 899999999999999999999999999998 444332 233322 47899999999998643210
Q ss_pred -------H-----------HHHHHhCCCcc----------CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 71 -------H-----------EIQEKLGLTRI----------RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 71 -------~-----------~~~~~~~~~~~----------~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ++...+....+ ....++++.+||++|.|++++++++...+
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 1 11111111111 02456899999999999999999988643
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-14 Score=96.65 Aligned_cols=98 Identities=20% Similarity=0.260 Sum_probs=72.2
Q ss_pred CCCCcc-Cchh--------hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQD-KIRP--------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~-~~~~--------~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||||++ .+.. ....++..+|++++|+|++++.++++. .+++.+ .++|+++|+||+|+.+..+.+
T Consensus 297 DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~il~~l------~~~piivV~NK~DL~~~~~~~ 369 (482)
T 1xzp_A 297 DTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR-KILERI------KNKRYLVVINKVDVVEKINEE 369 (482)
T ss_dssp ESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH-HHHHHH------TTSSEEEEEEECSSCCCCCHH
T ss_pred ECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH-HHHHHh------cCCCEEEEEECcccccccCHH
Confidence 899988 6542 234588999999999999887666542 333333 368999999999997655555
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++.+... ..++++++||+++.|++++++++.+.+
T Consensus 370 ~~~~~~~------~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 370 EIKNKLG------TDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp HHHHHHT------CSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred HHHHHhc------CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5544322 224688999999999999999998753
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-15 Score=94.49 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=70.0
Q ss_pred CCCCccCchh----------hHHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC
Q psy17510 1 DVGGQDKIRP----------LWRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 68 (113)
Q Consensus 1 D~~G~~~~~~----------~~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 68 (113)
||||+..+.. +.+.|+ ..+|++++|+|+++..+. ..+...+.. .++|+++++||+|+.+..
T Consensus 54 DtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~---~~l~~~l~~----~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 54 DLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERH---LYLTSQLFE----LGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp ECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHH---HHHHHHHTT----SCSCEEEEEECHHHHHHT
T ss_pred eCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhH---HHHHHHHHH----cCCCEEEEEEChhcCCcC
Confidence 8999988764 566677 899999999999875333 334444432 378999999999974321
Q ss_pred ----CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 69 ----KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 69 ----~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
....+.+.++ ++++++||+++.|++++++++.+.
T Consensus 127 ~~~~~~~~l~~~lg--------~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 127 GISIDTEKLESLLG--------CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp TCEECHHHHHHHHC--------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHcC--------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 2334444443 468999999999999999999764
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-15 Score=100.27 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=74.2
Q ss_pred CCCCccCchhh-------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHH
Q psy17510 1 DVGGQDKIRPL-------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI 73 (113)
Q Consensus 1 D~~G~~~~~~~-------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 73 (113)
||||++.+..+ +..++..+|++++|+|++.. .....|+..+.. .++|+++|+||+|+.+.... +.
T Consensus 89 DTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~ 160 (423)
T 3qq5_A 89 DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-EL 160 (423)
T ss_dssp ECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HH
T ss_pred ECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HH
Confidence 89999877654 45688999999999998432 334566666654 37899999999999765443 33
Q ss_pred HHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 74 QEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+.+.. ..+++++++||+++.|++++++++.+.+
T Consensus 161 ~~~l~~----~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 161 KGLYES----RYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp HHHSSC----CTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred HHHHHH----HcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 333322 2345789999999999999999999876
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-16 Score=96.69 Aligned_cols=69 Identities=30% Similarity=0.376 Sum_probs=57.9
Q ss_pred CCCCccCchhhHHhhhcC----CcEEEEEEECC-ChhhHHHHHHHHHHHHcCc---CCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTG----TQGLIFVVDCA-DRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~----~~~vi~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||+++++.++..|+.. ++++++|+|.+ ++.++.....|+..+.... ...++|+++++||+|+.+...
T Consensus 61 Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp ECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred ECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 899999999999988887 89999999999 7788888888888776532 125799999999999977654
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=91.34 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=71.5
Q ss_pred CCCCccCchh------hHHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC----C
Q psy17510 1 DVGGQDKIRP------LWRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA----M 68 (113)
Q Consensus 1 D~~G~~~~~~------~~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~ 68 (113)
||||+..+.. +.+.|+ ..+|++++|+|.++..+ ...|+.++.. .++|+++++||+|+.+. .
T Consensus 58 DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~ 130 (258)
T 3a1s_A 58 DLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQ---SLYLLLEILE----MEKKVILAMTAIDEAKKTGMKI 130 (258)
T ss_dssp ECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCB
T ss_pred ECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEEEEEECcCCCCccchHH
Confidence 8999988875 335565 58999999999987543 3446666654 47899999999997432 2
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+.+.++ ++++++||+++.|++++++++.+.+
T Consensus 131 ~~~~l~~~lg--------~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 131 DRYELQKHLG--------IPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CHHHHHHHHC--------SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 2344555444 4688999999999999999988753
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.5e-15 Score=98.32 Aligned_cols=106 Identities=18% Similarity=0.110 Sum_probs=72.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~ 76 (113)
||||++.|...+......+|++++|+|+++........+.+..+... ...|+++++||+|+.+... .+++.+.
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 165 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKEF 165 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHHHH
Confidence 89999999988888889999999999998642122223333322211 2358999999999875321 1122222
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.. .....++++++||+++.|+++++++|.+.+
T Consensus 166 l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 166 IEG--TVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 221 112457899999999999999999998754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-15 Score=95.01 Aligned_cols=101 Identities=19% Similarity=0.132 Sum_probs=74.7
Q ss_pred CccCchhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCcc
Q psy17510 4 GQDKIRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI 82 (113)
Q Consensus 4 G~~~~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 82 (113)
.+++++.+.+.+++++|++++|+|++++. ++.....|+..+.. .++|+++|+||+|+.+........+.. ..+
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~--~~~ 138 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWI--SIY 138 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHH--HHH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHH--HHH
Confidence 37888888889999999999999999875 78877888887643 579999999999986531101011111 111
Q ss_pred CCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 83 RDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 83 ~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...+++++++||+++.|++++++.+...
T Consensus 139 ~~~g~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 139 RDAGYDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp HHTTCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred HHCCCeEEEEECCCCCCHHHHHhhccCc
Confidence 1234579999999999999999987643
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=92.85 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=69.2
Q ss_pred CCCCccCchh----------hHHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC
Q psy17510 1 DVGGQDKIRP----------LWRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 68 (113)
Q Consensus 1 D~~G~~~~~~----------~~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 68 (113)
||||+..+.. .++.|+ ..+|++++|+|+++..+. ..|...+.. .++|+++++||+|+.+..
T Consensus 56 DtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~----~~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 56 DLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp ECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHH---HHHHHHHHH----HTCCEEEEEECHHHHHHT
T ss_pred ECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHH---HHHHHHHHh----cCCCEEEEEECccchhhh
Confidence 8999988762 234444 799999999999875433 344444433 268999999999975422
Q ss_pred ----CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 ----KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ----~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+.+.++ ++++++||++|.|++++++++.+.+
T Consensus 129 ~~~~~~~~l~~~lg--------~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 129 NIRIEIDALSARLG--------CPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp TEEECHHHHHHHHT--------SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHhcC--------CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 2334444443 4688999999999999999998765
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.3e-14 Score=95.56 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=50.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+++|...+..++..+|++|+|+|+++...... ..++..+.. .++|+++++||+|+.+.
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t-~~~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRT-IKLMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEeCCCCccc
Confidence 899999999999999999999999999997544443 334444433 47899999999999654
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.2e-15 Score=99.88 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=72.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH----HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE----IQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~ 76 (113)
||||++.|...+..++..+|++++|+|+++.. .....+++..+.. .++|+++++||+|+.+....+. +.+.
T Consensus 79 DtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~-~~qt~e~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~ 153 (482)
T 1wb1_A 79 DAPGHADLIRAVVSAADIIDLALIVVDAKEGP-KTQTGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSI 153 (482)
T ss_dssp CCSSHHHHHHHHHHHTTSCCEEEEEEETTTCS-CHHHHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEecCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHH
Confidence 89999999999999999999999999998731 1222333333322 4688899999999875221121 2121
Q ss_pred hCCC-ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLT-RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~-~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+... .+ ..++++++||++|.|+++++++|.+.+
T Consensus 154 l~~~~~~--~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 154 LQSTHNL--KNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp HHHSSSG--GGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred Hhhhccc--ccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 1111 11 146799999999999999999998753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=95.14 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=65.3
Q ss_pred CCCCcc--------CchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQD--------KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~--------~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++ +++.++..++..||++++|+|++++.+..+ .++..+.+. .++|+++++||+|+.+...
T Consensus 57 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~--- 128 (436)
T 2hjg_A 57 DTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA--- 128 (436)
T ss_dssp C---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC--------
T ss_pred ECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh---
Confidence 899986 677788889999999999999987655433 344444432 5789999999999864210
Q ss_pred HHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+. ..++ +++++||++|.|+.++++++.+.+
T Consensus 129 ----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 129 ----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp ----CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred ----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhc
Confidence 011111 1122 578999999999999999998765
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=93.42 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=73.0
Q ss_pred CCCCccCch---------hhHHhhhcCCcEEEEEEECCChh--hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKIR---------PLWRHYYTGTQGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~~---------~~~~~~~~~~~~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||+.... .....+...+|++++|+|++++. +++....|+..+.... .++|+++|+||+|+.+...
T Consensus 220 Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~ 297 (357)
T 2e87_A 220 DTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEEN 297 (357)
T ss_dssp ECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHH
T ss_pred eCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHH
Confidence 789975432 12223455799999999998766 6777778888775531 2799999999999865322
Q ss_pred HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..+... ..+++++++||++|.|++++++++.+.+
T Consensus 298 ~~~~~~~~~-----~~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 298 IKRLEKFVK-----EKGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp HHHHHHHHH-----HTTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----hcCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 222222111 2345688999999999999999998754
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-15 Score=101.53 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=71.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCC-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL- 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~- 79 (113)
|||||+.|..++..++..+|++++|+|+++... ....+++..+.. .++|+++++||+|+.+... ..+...+..
T Consensus 57 DTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~-~qT~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~ 130 (501)
T 1zo1_I 57 DTPGHAAFTSMRARGAQATDIVVLVVAADDGVM-PQTIEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQY 130 (501)
T ss_dssp CCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSC-TTTHHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCC
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEeecccCcc-HHHHHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHh
Confidence 899999999999999999999999999987321 112223333322 4689999999999865211 111111110
Q ss_pred Ccc-C--CCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 80 TRI-R--DRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 80 ~~~-~--~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
... . ...++++++||++|.|++++++++...
T Consensus 131 ~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 131 GILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred hhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 011 1 124789999999999999999998754
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.4e-14 Score=94.20 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=61.5
Q ss_pred CCCCccCchhhHH--------hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPLWR--------HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~--------~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++.+...++ .++..+|++++|+|.+++.+... ..|+..+ ..+|+++|+||+|+.+.....
T Consensus 278 DT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~- 349 (462)
T 3geh_A 278 DTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT- 349 (462)
T ss_dssp C--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST-
T ss_pred ECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH-
Confidence 8999877655433 36889999999999998655443 4555555 347999999999986532211
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+ ....+++++||+++.|++++++++.+.+
T Consensus 350 -----~~~~~-~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 350 -----SLEYP-ENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp -----TCCCC-TTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -----HHHHh-ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 11111 1345789999999999999999998764
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=94.54 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=74.2
Q ss_pred CCCCc----cCchhhHHhh---hcCCcEEEEEEECCC---hhhHHHHHHHHHHHHcCc-CCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQ----DKIRPLWRHY---YTGTQGLIFVVDCAD---RDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~----~~~~~~~~~~---~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||+ ..+..+...+ +.+++++++|+|+++ +.+++....|..++.... ...++|+++|+||+|+.+...
T Consensus 212 DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e 291 (342)
T 1lnz_A 212 DLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE 291 (342)
T ss_dssp EHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH
T ss_pred cCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH
Confidence 56774 2333444444 455999999999987 677888888888876542 235799999999999865211
Q ss_pred -HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 70 -PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+++.+.+.. .++++++||+++.|++++++++.+.+.
T Consensus 292 ~~~~l~~~l~~------~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 292 NLEAFKEKLTD------DYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp HHHHHHHHCCS------CCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhhc------CCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 1223333221 146889999999999999999987653
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.9e-14 Score=91.59 Aligned_cols=102 Identities=7% Similarity=-0.047 Sum_probs=72.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEe-CCCCCCCCCHH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFAN-KQDLPDAMKPH----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~D~~~~~~~~----~~~ 74 (113)
||||+++|...+..++..+|++|+|+| +. .......+++..+.. .++|. ++++| |+|+ +....+ ++.
T Consensus 66 DtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~ 138 (370)
T 2elf_A 66 DAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLK 138 (370)
T ss_dssp ECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHH
Confidence 899999998888888999999999999 53 345555666655543 35677 89999 9998 421111 222
Q ss_pred HHhCCCccCCCCeEEEe--ccccC---CCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQP--SCATT---ADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~--~sa~~---~~~i~~~~~~l~~~~ 111 (113)
+.+... ....+++++ +||++ +.|++++++.|.+.+
T Consensus 139 ~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 139 VITSGT--VLQDWECISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp HHTTTS--TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred HHHHhc--CCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence 222211 113578999 99999 999999999887654
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-14 Score=94.90 Aligned_cols=106 Identities=21% Similarity=0.174 Sum_probs=73.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC-HH----HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK-PH----EIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~~----~~~ 74 (113)
||||+++|...+..++..+|++|+|+|+++... ....+++..+.. .++| +++++||+|+.+... .+ ++.
T Consensus 81 DtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~ 155 (405)
T 2c78_A 81 DCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVR 155 (405)
T ss_dssp ECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHH
Confidence 899999999998899999999999999987533 344556655543 3678 899999999874211 11 122
Q ss_pred HHhCCCccCCCCeEEEeccccCCCC------------------HHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADG------------------LYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~------------------i~~~~~~l~~~~ 111 (113)
+.+....+....++++++||+++.| +.++++.+...+
T Consensus 156 ~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 156 DLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 2221111122346899999999987 778888877654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=92.79 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=66.8
Q ss_pred CCCCccC---------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQDK---------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~~---------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||||++. ++.++..++..||++++|+|.+++.+..+ .++..+.+. .++|+++++||+|+.+.. ..
T Consensus 55 DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~ 128 (439)
T 1mky_A 55 DTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-ER 128 (439)
T ss_dssp ECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HH
T ss_pred ECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HH
Confidence 8999775 34567789999999999999987543332 223333221 368999999999974310 11
Q ss_pred HHHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....+. ..++ +++++||++|.|+.++++++.+.+
T Consensus 129 ~~~~~~~-----~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 129 EVKPELY-----SLGFGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp HTHHHHG-----GGSSCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHH-----hcCCCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 1101111 1122 468999999999999999997654
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=92.34 Aligned_cols=97 Identities=13% Similarity=0.181 Sum_probs=65.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHH-------HHHHHHHHcCcCCCC-CeEEEEEeCCCCCCC-CCH-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-------RQELHRIINDREMRD-AIILIFANKQDLPDA-MKP- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~-~p~ilv~nK~D~~~~-~~~- 70 (113)
||||+++|...+..++..+|++|+|+|+++ .+++.. .+++..... .+ .|+++++||+|+.+. .+.
T Consensus 90 DtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~----~~~~~iivviNK~Dl~~~~~~~~ 164 (435)
T 1jny_A 90 DAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT----MGLDQLIVAVNKMDLTEPPYDEK 164 (435)
T ss_dssp CCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH----TTCTTCEEEEECGGGSSSTTCHH
T ss_pred ECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH----cCCCeEEEEEEcccCCCccccHH
Confidence 899999999999999999999999999997 555532 233332222 23 368999999998763 111
Q ss_pred ------HHHHHHhCCCccCCCCeEEEeccccCCCCHHH
Q psy17510 71 ------HEIQEKLGLTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 71 ------~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
+++.+.+....+....++++++||++|.|+.+
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 165 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 12222222111122347899999999999864
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-13 Score=90.38 Aligned_cols=99 Identities=15% Similarity=0.058 Sum_probs=66.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHh-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKL- 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~- 77 (113)
||||+++|...+..++..+|++++|+|+++... ....+++..+... ...|+++++||+|+.+... ..++.+..
T Consensus 110 DtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~ 185 (434)
T 1zun_B 110 DTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVFESIKADYL 185 (434)
T ss_dssp ECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHHHHHHHHHH
Confidence 899999999998889999999999999987532 3334444444321 2247999999999975211 11111111
Q ss_pred ---CCCccCCCCeEEEeccccCCCCHHHH
Q psy17510 78 ---GLTRIRDRNWYVQPSCATTADGLYEG 103 (113)
Q Consensus 78 ---~~~~~~~~~~~~~~~sa~~~~~i~~~ 103 (113)
.........++++++||++|.|+.++
T Consensus 186 ~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 186 KFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 11110123478999999999998863
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=91.69 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=67.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhh---H---HHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCC-C---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR---I---DEARQELHRIINDREMRDAI-ILIFANKQDLPDAM-K--- 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~-~--- 69 (113)
|||||++|...+..++..+|++++|+|+++... + ....+.+..+.. .++| +++++||+|+.+.. +
T Consensus 101 DTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~~~~~~~ 176 (439)
T 3j2k_7 101 DAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTVNWSNER 176 (439)
T ss_pred ECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcccchHHHH
Confidence 899999999999999999999999999987432 1 133333333332 3566 99999999985421 1
Q ss_pred HHHHHHH----hCCCccC-CCCeEEEeccccCCCCHHHHHH
Q psy17510 70 PHEIQEK----LGLTRIR-DRNWYVQPSCATTADGLYEGLT 105 (113)
Q Consensus 70 ~~~~~~~----~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~ 105 (113)
.+++.+. +....+. ...++++++||++|.|+.++.+
T Consensus 177 ~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 177 YEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1112121 1111111 1257899999999999998544
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.7e-14 Score=92.58 Aligned_cols=106 Identities=18% Similarity=0.102 Sum_probs=72.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC-H----HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK-P----HEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~----~~~~ 74 (113)
||||+++|...+..++..+|++|+|+|+++... ....+++..+.. .++| +++++||+|+.+... . .++.
T Consensus 72 DtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~ 146 (397)
T 1d2e_A 72 DCPGHADYVKNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIR 146 (397)
T ss_dssp ECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHhhHhhCCEEEEEEECCCCCC-HHHHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHH
Confidence 899999999888889999999999999987432 233344444432 4678 789999999864211 1 1222
Q ss_pred HHhCCCccCCCCeEEEeccccCCCC----------HHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADG----------LYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~----------i~~~~~~l~~~~ 111 (113)
+.+....+....++++++||+++.| +.++++.+.+.+
T Consensus 147 ~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 147 ELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 2221111222356899999999764 889999887654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.45 E-value=6e-13 Score=84.41 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=72.1
Q ss_pred CCCCccCchh------hHHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC----CC
Q psy17510 1 DVGGQDKIRP------LWRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD----AM 68 (113)
Q Consensus 1 D~~G~~~~~~------~~~~~~--~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----~~ 68 (113)
||||+..+.. .++.|+ .++|++++|+|+++. .....|+.++... ..+|+++++||+|+.+ ..
T Consensus 56 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~ 129 (271)
T 3k53_A 56 DLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKI 129 (271)
T ss_dssp ECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCC
T ss_pred eCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHH
Confidence 8999988876 566676 689999999999874 3344555555442 2389999999999643 12
Q ss_pred CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....+.+.++ ++++++||+++.|+.++++++.+.+
T Consensus 130 ~~~~l~~~lg--------~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 130 DIKKMRKELG--------VPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp CHHHHHHHHS--------SCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3445555544 4588999999999999999988653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=90.43 Aligned_cols=105 Identities=10% Similarity=-0.007 Sum_probs=66.2
Q ss_pred CCCCccCchhhH------------HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC
Q psy17510 1 DVGGQDKIRPLW------------RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 68 (113)
Q Consensus 1 D~~G~~~~~~~~------------~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 68 (113)
||||+++..... ..++..+|++++|+|.++..+..+ ..+...+.. .++|+++++||+|+.+..
T Consensus 234 Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~----~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 234 DTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER----RGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp SCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCEEEEEEECGGGSTTG
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCCch
Confidence 789985543321 346788999999999987555443 223333322 578999999999986532
Q ss_pred --CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 69 --KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 69 --~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...++.+............+++++||++|.|++++++.+.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 309 EKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp GGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 233333322211111234579999999999999999988764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=90.75 Aligned_cols=99 Identities=20% Similarity=0.169 Sum_probs=67.1
Q ss_pred CCCC--------ccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGG--------QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G--------~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
|||| +++++.++..++..+|++++|+|..+.. .....++..+.+. .++|+++++||+|+.+.. ..
T Consensus 77 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~--~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~ 149 (456)
T 4dcu_A 77 DTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV--TAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--AN 149 (456)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCS--CHHHHHHHHHHTT---CCSCEEEEEECC----------
T ss_pred ECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCC--ChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hh
Confidence 8999 7888888999999999999999987642 2333455555443 579999999999975421 01
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. . .+........+.+||+++.|+.++++++.+.+
T Consensus 150 ~----~-e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 150 I----Y-DFYSLGFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp -----C-CSGGGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred H----H-HHHHcCCCceEEeecccccchHHHHHHHHhhc
Confidence 1 1 11111111356999999999999999998754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=82.37 Aligned_cols=77 Identities=31% Similarity=0.425 Sum_probs=61.5
Q ss_pred CCCCccCchhhHHhhhcC----CcEEEEEEECC-ChhhHHHHHHHHHHHHcCc---CCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTG----TQGLIFVVDCA-DRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~----~~~vi~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||++.+...+..++.. +|++++|+|++ ++.++.....|+..+.... ...+.|+++++||+|+.+.....+
T Consensus 97 Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 176 (193)
T 2ged_A 97 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSK 176 (193)
T ss_dssp EETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHH
T ss_pred ECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHH
Confidence 799999998888888776 89999999999 7888888888887775432 125799999999999987766665
Q ss_pred HHHHh
Q psy17510 73 IQEKL 77 (113)
Q Consensus 73 ~~~~~ 77 (113)
+.+.+
T Consensus 177 ~~~~l 181 (193)
T 2ged_A 177 IKDAL 181 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-13 Score=91.77 Aligned_cols=99 Identities=20% Similarity=0.179 Sum_probs=64.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhH------HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI------DEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~ 72 (113)
||||+++|...+..++..+|++++|+|+++.... ....+.+...... ...|+++++||+|+.+... .++
T Consensus 117 DTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~ 193 (483)
T 3p26_A 117 DAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDWSQQRFEE 193 (483)
T ss_dssp CCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT---TCCCEEEEEECGGGGTTCHHHHHH
T ss_pred ECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc---CCCcEEEEEECcCcccchHHHHHH
Confidence 8999999999999999999999999999875332 1222333333221 2357999999999865211 112
Q ss_pred HHHHhC----CCccCCCCeEEEeccccCCCCHHH
Q psy17510 73 IQEKLG----LTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 73 ~~~~~~----~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
+.+... ...+....++++++||++|.|+.+
T Consensus 194 i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 194 IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 222111 111112357899999999999874
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-13 Score=99.30 Aligned_cols=106 Identities=21% Similarity=0.168 Sum_probs=73.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCCH-----HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-----HEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~-----~~~~ 74 (113)
||||+++|...+..++..+|++|+|+|+++... ....+++..+.. .++| +++++||+|+.+.... .++.
T Consensus 365 DTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~ 439 (1289)
T 3avx_A 365 DCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVR 439 (1289)
T ss_dssp ECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHH
Confidence 899999999998889999999999999987432 233445544432 3678 7999999999752111 1122
Q ss_pred HHhCCCccCCCCeEEEeccccCC--------CCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTA--------DGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~--------~~i~~~~~~l~~~~ 111 (113)
+.+....+....++++++||+++ .|+.++++.+...+
T Consensus 440 elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 440 ELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 22211112223578999999999 46889999888754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=86.23 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=69.4
Q ss_pred CCCCcc-------------CchhhHHhhhcCCcEEE-EEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQD-------------KIRPLWRHYYTGTQGLI-FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~-------------~~~~~~~~~~~~~~~vi-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||.. .+..++..|+..++.++ +|+|+++..+..+...+++.+.. .+.|+++|+||+|+.+
T Consensus 131 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~----~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 131 DLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMD 206 (299)
T ss_dssp ECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----TCSSEEEEEECGGGSC
T ss_pred eCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC----CCCeEEEEEEccccCC
Confidence 799964 45667888999998777 68999875443333345555522 4789999999999865
Q ss_pred CCC-HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 67 AMK-PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 67 ~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
... ..+..+. ..........+++.+||+++.|++++++++.+.
T Consensus 207 ~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 207 EGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp TTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CCchHHHHHhC-CcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 432 2222111 001111122478999999999999999987653
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=84.91 Aligned_cols=62 Identities=26% Similarity=0.259 Sum_probs=48.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||++.|...+..++..+|++|+|+|+++... .....++..+.. .++|+++++||+|+.+.
T Consensus 88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~-~~t~~~~~~~~~----~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE-DRTRKLMEVTRL----RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-HHHHHHHHHHTT----TTCCEEEEEECTTSCCS
T ss_pred ECCCChhHHHHHHHHHHHCCEEEEEEeCCccch-HHHHHHHHHHHH----cCCCEEEEEcCcCCccc
Confidence 899999999988889999999999999987532 223344444422 57899999999998764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=83.72 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=66.8
Q ss_pred CCCCcc-Cc--------hhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCH
Q psy17510 1 DVGGQD-KI--------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKP 70 (113)
Q Consensus 1 D~~G~~-~~--------~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~ 70 (113)
||||+. +. ......++..+|++++|+|.++ +.....++...... .+.|+++++||+|+.+. ...
T Consensus 62 DTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~ 135 (301)
T 1ega_A 62 DTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADL 135 (301)
T ss_dssp SSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHH
T ss_pred ECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHH
Confidence 899997 32 2233557889999999999976 22233344433332 46899999999998651 112
Q ss_pred HHHHHHhCCCccCCCCe-EEEeccccCCCCHHHHHHHHHhhc
Q psy17510 71 HEIQEKLGLTRIRDRNW-YVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+..+.+.. ..++ .++++||+++.|++++++.+...+
T Consensus 136 ~~~l~~l~~----~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 136 LPHLQFLAS----QMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp HHHHHHHHT----TSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred HHHHHHHHH----hcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 122222221 1122 688999999999999999998754
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-13 Score=92.82 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=55.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh---hHH---HHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCC-CHH-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD---RID---EARQELHRIINDREMRDAI-ILIFANKQDLPDAM-KPH- 71 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~-~~~- 71 (113)
|||||++|...+..++..+|++|+|+|+++.. +++ ...+.+..... .++| +++++||+|+.+.. +..
T Consensus 127 DtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~ 202 (467)
T 1r5b_A 127 DAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEPSVQWSEER 202 (467)
T ss_dssp CCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTSTTCSSCHHH
T ss_pred ECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCCCccccHHH
Confidence 89999999999888999999999999998752 111 12222333322 4677 99999999996421 211
Q ss_pred ------HHHHHhCCC-ccC-CCCeEEEeccccCCCCHHHHH
Q psy17510 72 ------EIQEKLGLT-RIR-DRNWYVQPSCATTADGLYEGL 104 (113)
Q Consensus 72 ------~~~~~~~~~-~~~-~~~~~~~~~sa~~~~~i~~~~ 104 (113)
++.+.+... .+. ...++++++||++|.|+.+++
T Consensus 203 ~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 203 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 122211111 111 125789999999999987644
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-12 Score=88.61 Aligned_cols=100 Identities=20% Similarity=0.162 Sum_probs=64.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhh------HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR------IDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~ 72 (113)
||||+++|...+..++..+|++|+|+|+++... .......+..+... ...|+++++||+|+.+... ..+
T Consensus 251 DTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l---gi~~iIVVvNKiDl~~~~~~~~~e 327 (611)
T 3izq_1 251 DAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDWSQQRFEE 327 (611)
T ss_dssp ECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT---TCCEEEEEEECTTTTTTCHHHHHH
T ss_pred ECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc---CCCeEEEEEecccccchhHHHHHH
Confidence 899999999999999999999999999986310 11222333333221 2346999999999875211 111
Q ss_pred HHHHh----CCCccCCCCeEEEeccccCCCCHHHH
Q psy17510 73 IQEKL----GLTRIRDRNWYVQPSCATTADGLYEG 103 (113)
Q Consensus 73 ~~~~~----~~~~~~~~~~~~~~~sa~~~~~i~~~ 103 (113)
+.+.. ....+....++++++||++|.|+.++
T Consensus 328 i~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 328 IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 11111 11111122568999999999998754
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.2e-12 Score=85.89 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=63.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh---hHH---HHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC--HH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD---RID---EARQELHRIINDREMRDAI-ILIFANKQDLPDAMK--PH 71 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~--~~ 71 (113)
|||||++|...+..++..+|++|+|+|+++.. +++ ...+++..... .++| +++++||+|+.+... ..
T Consensus 91 DtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~~~~~~ 166 (458)
T 1f60_A 91 DAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWDESRFQ 166 (458)
T ss_dssp ECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTCHHHHH
T ss_pred ECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCCHHHHH
Confidence 89999999999999999999999999998642 111 23333333322 3555 999999999863111 11
Q ss_pred H----HHHHhCCCccCCCCeEEEeccccCCCCHHH
Q psy17510 72 E----IQEKLGLTRIRDRNWYVQPSCATTADGLYE 102 (113)
Q Consensus 72 ~----~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 102 (113)
+ +.+.+....+....++++++||++|.|+.+
T Consensus 167 ~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 167 EIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 1 111111111111246799999999999863
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-12 Score=86.24 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=65.4
Q ss_pred ccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCCCccC
Q psy17510 5 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGLTRIR 83 (113)
Q Consensus 5 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~ 83 (113)
+++|+++++.+...++++++|+|++++. ..|...+.+. ..++|+++|+||+|+.+.. ..+.+.+... ....
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~~~ 127 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMR-YSAK 127 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHH-HHHH
Confidence 5678889999999999999999998752 2333333221 1478999999999986533 2222222111 0001
Q ss_pred CCC---eEEEeccccCCCCHHHHHHHHHh
Q psy17510 84 DRN---WYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 84 ~~~---~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
..+ .+++.+||+++.|++++++.+.+
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 112 26889999999999999998865
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=85.78 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=48.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+++|...+..++..+|++++|+|+++... .....++..+.. .++|+++++||+|+.
T Consensus 80 DTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~-~qt~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 80 DAPGYGDFVGEIRGALEAADAALVAVSAEAGVQ-VGTERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp ECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred eCCCccchHHHHHHHHhhcCcEEEEEcCCcccc-hhHHHHHHHHHH----ccCCEEEEecCCchh
Confidence 899999999999999999999999999876432 223455555543 468999999999987
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=81.35 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=66.7
Q ss_pred CCCCc---------cCchhhHHhhhcCCcEEEEEEECCChh--hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQ---------DKIRPLWRHYYTGTQGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~---------~~~~~~~~~~~~~~~~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||+|. +.|+..+. .+..+|++++|+|++++. .......|...+.. ....++|+++|+||+|+.+..
T Consensus 232 DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~~~p~ilV~NK~Dl~~~~- 308 (364)
T 2qtf_A 232 DTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVSGKPILVTLNKIDKINGD- 308 (364)
T ss_dssp ECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCCSCCEEEEEECGGGCCSC-
T ss_pred eCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcCCCCEEEEEECCCCCCch-
Confidence 78886 22444444 578999999999998765 33333333322221 112568999999999986543
Q ss_pred HHH---HH----HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 70 PHE---IQ----EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 70 ~~~---~~----~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+ .. ..+. ....+++++||+++.|++++++++.+.+
T Consensus 309 ~~~~~~~~~~l~~~l~-----~~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 309 LYKKLDLVEKLSKELY-----SPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp HHHHHHHHHHHHHHHC-----SCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-----CCCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 211 11 2220 1234678999999999999999987654
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.28 E-value=6.2e-11 Score=83.72 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=50.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+..|...+..++..+|++|+|+|+++.........| ..+.. .++|+++++||+|+...
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCcccC
Confidence 8999999999999999999999999999986555544333 33433 47899999999998754
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-13 Score=93.72 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=63.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh---h---HHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC--H-
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD---R---IDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK--P- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~--~- 70 (113)
||||+++|...+..++..+|++|+|+|+++.. . ......++..+.. .++| +++++||+|+.+... .
T Consensus 261 DTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~~~~~~~~ 336 (592)
T 3mca_A 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMSWSEDRFQ 336 (592)
T ss_dssp EEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGTTCHHHHH
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEeccccccccHHHHH
Confidence 89999999988888999999999999998531 1 1122233333322 3565 999999999865211 1
Q ss_pred ---HHHHHHh-CCCccCCCCeEEEeccccCCCCHH--------------HHHHHHHhh
Q psy17510 71 ---HEIQEKL-GLTRIRDRNWYVQPSCATTADGLY--------------EGLTWLTSN 110 (113)
Q Consensus 71 ---~~~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~--------------~~~~~l~~~ 110 (113)
.++...+ ....+....++++++||++|.|+. .+++.|...
T Consensus 337 ~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 337 EIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp HHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred HHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 1222222 211222235689999999999997 677777654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-12 Score=84.29 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=65.6
Q ss_pred CccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCCCcc
Q psy17510 4 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGLTRI 82 (113)
Q Consensus 4 G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~ 82 (113)
.+++|++..++++.+++++++|+|++++.+ .|...+.+. ..++|+++|+||+|+.+.. ..+.+.+... ...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~NK~DLl~~~~~~~~~~~~l~-~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVGNKADLLPRSVKYPKLLRWMR-RMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEEECGGGSCTTCCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEEEChhcCCCccCHHHHHHHHH-HHH
Confidence 367889999999999999999999998652 122222111 1478999999999986542 2222222211 001
Q ss_pred CCCC---eEEEeccccCCCCHHHHHHHHHhh
Q psy17510 83 RDRN---WYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 83 ~~~~---~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...+ .+++.+||+++.|++++++.+.+.
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 1122 268899999999999999988653
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=87.08 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=70.7
Q ss_pred CCCCccC---chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHH----
Q psy17510 1 DVGGQDK---IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPH---- 71 (113)
Q Consensus 1 D~~G~~~---~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~---- 71 (113)
||||... ....+..|+..+|++++|+|++++.+..+...|...+.. .+.|+++|+||+|+.+.. +..
T Consensus 180 DTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~~~~~~ee~e~ 255 (695)
T 2j69_A 180 DSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRESLIDPDDVEE 255 (695)
T ss_dssp ECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGGGCSSTTCHHH
T ss_pred ECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccccccChhhHHH
Confidence 8999654 345667899999999999999887666655444444421 367899999999985421 110
Q ss_pred ------HHHH----HhCCCccC-----CCCeEEEecccc--------------CCCCHHHHHHHHHhhc
Q psy17510 72 ------EIQE----KLGLTRIR-----DRNWYVQPSCAT--------------TADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ------~~~~----~~~~~~~~-----~~~~~~~~~sa~--------------~~~~i~~~~~~l~~~~ 111 (113)
.+.+ .+. .... ....+++++||+ ++.|++++++.+.+.+
T Consensus 256 l~~~~~~i~~~~~~~l~-~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 256 LQASENRLRQVFNANLA-EYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHG-GGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 1111 111 1111 123468999999 9999999999887643
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-12 Score=81.67 Aligned_cols=87 Identities=8% Similarity=0.056 Sum_probs=45.3
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCC
Q psy17510 19 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTAD 98 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 98 (113)
+|+++++++.+..........+++.+. .++|+++|+||+|+.+........+... ..+...+++++++||+++.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~-----~~~pvi~V~nK~D~~~~~e~~~~~~~i~-~~l~~~~i~v~~~sa~~~~ 189 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIM-KEIQEHKIKIYEFPETDDE 189 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHT-----TTSCEEEEESSGGGSCHHHHHHHHHHHH-HHHHHTTCCCCCC------
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHh-----ccCCEEEEEeccCCCCHHHHHHHHHHHH-HHHHHcCCeEEcCCCCCCh
Confidence 789999998775332233345555552 2689999999999854222211111111 1112245567899999999
Q ss_pred CHHHHHHHHHhhc
Q psy17510 99 GLYEGLTWLTSNH 111 (113)
Q Consensus 99 ~i~~~~~~l~~~~ 111 (113)
|+.++++++.+.+
T Consensus 190 ~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 190 EENKLVKKIKDRL 202 (274)
T ss_dssp -----CHHHHHTC
T ss_pred hHHHHHHHHhcCC
Confidence 9999999988764
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-10 Score=80.51 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=48.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+..|...+..++..+|++|+|+|+++..... ...++..+.. .++|+++++||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~q-t~~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQ-SETVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 89999999999999999999999999998754333 2333444432 47899999999998653
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=75.92 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=63.3
Q ss_pred CCCCccCch-----------hhHHhhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHcCcCCCCCeEEEEEe-CCCCCCC
Q psy17510 1 DVGGQDKIR-----------PLWRHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDAIILIFAN-KQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~-----------~~~~~~~~~~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~n-K~D~~~~ 67 (113)
||||+..+. .....++..+|++++|+|+++... ......++...... ....|.++++| |+|+.+.
T Consensus 77 DTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 77 DTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp ECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC
T ss_pred ECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc
Confidence 899986552 223347789999999999986222 22233455554321 11356666666 9998743
Q ss_pred CCHHH------------HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 MKPHE------------IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 ~~~~~------------~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.... +.+..+.... .+..+++||+++.|++++|+++.+.+
T Consensus 155 -~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 155 -SLMDYMHDSDNKALSKLVAACGGRIC---AFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp -CHHHHHHHCCCHHHHHHHHHTTTCEE---ECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHhcchHHHHHHHHHhCCeEE---EecCcccccccHHHHHHHHHHHHHHH
Confidence 3322 2222221110 01016899999999999999998754
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-10 Score=79.09 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=49.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+..|...+..++..+|++++|+|+++..+...... +..+.. .++|+++++||+|+...
T Consensus 81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH----cCCCEEEEEECCCcccc
Confidence 899999999999999999999999999987655544333 344433 47899999999998763
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6e-10 Score=76.94 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=50.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||+-.|..-....+.-+|++|+|+|+...- ...+...++.+.+ .++|.++++||+|....
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV-~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGV-EAQTRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBS-CHHHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCc-ccccHHHHHHHHH----hCCceEEEEecccchhc
Confidence 99999999999999999999999999998642 2333455566654 57999999999998653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.7e-12 Score=82.67 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=46.9
Q ss_pred CCCCc-------cCchhhHH-------hhhcCC-------------cEEEEEEECCChhhHHHHH-HHHHHHHcCcCCCC
Q psy17510 1 DVGGQ-------DKIRPLWR-------HYYTGT-------------QGLIFVVDCADRDRIDEAR-QELHRIINDREMRD 52 (113)
Q Consensus 1 D~~G~-------~~~~~~~~-------~~~~~~-------------~~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~ 52 (113)
||||+ +++..++. .|+..+ |+++|+++.+ ..++.... .|+..+ ..+
T Consensus 101 DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~ 174 (361)
T 2qag_A 101 DTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNK 174 (361)
T ss_dssp C--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-
T ss_pred EeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccC
Confidence 89998 77877775 666544 3566666542 23333333 455544 257
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHH--HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 53 AIILIFANKQDLPDAMKPHEIQE--KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 53 ~p~ilv~nK~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+|+++|+||+|+.+. .++.. ..........+++++++||+++.+ ++.|.++.+.
T Consensus 175 ~piIlV~NK~Dl~~~---~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 175 VNIVPVIAKADTLTL---KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp SCEEEEEECCSSSCH---HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHH
T ss_pred CCEEEEEECCCCCCH---HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 899999999998653 22222 111122334567889999999988 6666655543
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=74.76 Aligned_cols=106 Identities=19% Similarity=0.111 Sum_probs=63.4
Q ss_pred CCCCccC-------------chhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDK-------------IRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~-------------~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||..+ +..++..++..+|++++|+|.++.. .......+...+.. .+.|+++|+||+|+.+
T Consensus 137 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~----~~~~~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 137 DLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP----EGKRTIGVITKLDLMD 212 (315)
T ss_dssp ECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS----SCSSEEEEEECTTSSC
T ss_pred ECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC----CCCcEEEEEcCcccCC
Confidence 7999754 5567778999999999999974332 11111234444422 4789999999999865
Q ss_pred CCC-HHHHHHHhCCCccCCCCeEEEeccccC---CCCHHHHHHHHHhhc
Q psy17510 67 AMK-PHEIQEKLGLTRIRDRNWYVQPSCATT---ADGLYEGLTWLTSNH 111 (113)
Q Consensus 67 ~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~~~~l~~~~ 111 (113)
... ..+..+. ..........++..+|+.+ +.|+.++++.+...+
T Consensus 213 ~~~~~~~~~~~-~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 213 KGTDAMEVLTG-RVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp SSCCCHHHHTT-SSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred cchHHHHHHhC-CCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 433 1222211 0011111223455566666 788999888866543
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.11 E-value=9.1e-11 Score=74.96 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=64.0
Q ss_pred CCCcc-CchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 2 VGGQD-KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 2 ~~G~~-~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
.|||. +..+.....++.+|+++.|+|+.++.+... ..+..+. .++|.++++||+|+.+....+...+.+.
T Consensus 6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~-- 76 (282)
T 1puj_A 6 FPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFE-- 76 (282)
T ss_dssp ---CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHH--
Confidence 57875 445566678999999999999998754431 1233332 4689999999999976211122222221
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+++++.+||+++.|++++++.+.+.
T Consensus 77 ---~~g~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 77 ---NQGIRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp ---TTTCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred ---hcCCcEEEEECCCcccHHHHHHHHHHH
Confidence 234468899999999999988876654
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-11 Score=76.20 Aligned_cols=106 Identities=15% Similarity=-0.025 Sum_probs=61.8
Q ss_pred CCCCccCchhhHH------hhhcCCcEEEEEEECCChhhHHHHHH---HHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQDKIRPLWR------HYYTGTQGLIFVVDCADRDRIDEARQ---ELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~~~~~~~~------~~~~~~~~vi~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||||+..+..... .++.. +++++++|........+... +...... ..++|+++++||+|+.+.....
T Consensus 115 DtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D~~~~~~~~ 190 (262)
T 1yrb_A 115 DTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLLSEEEKE 190 (262)
T ss_dssp ECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGCCHHHHH
T ss_pred eCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEecccccccccHH
Confidence 8999876543321 24566 89999998764322222211 1111111 1368999999999986532111
Q ss_pred HHHHHhCC--------------------------CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGL--------------------------TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~--------------------------~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++.+.+.. ..+ ...++++++||+++.|++++++++.+.+
T Consensus 191 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 191 RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHHHHHHHHHHh
Confidence 11111000 000 1234688999999999999999998754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-10 Score=68.49 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCCCcc----------CchhhHHhhh---cCCcEEEEEEECCChhhHHH--HHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQD----------KIRPLWRHYY---TGTQGLIFVVDCADRDRIDE--ARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~----------~~~~~~~~~~---~~~~~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+. .++.....++ ..++++++++|++.+.+... ...|+. . .+.|+++++||+|+.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~----~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D----SNIAVLVLLTKADKL 150 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H----TTCCEEEEEECGGGS
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H----cCCCeEEEEecccCC
Confidence 688874 2344444455 47899999999987544332 222322 1 468999999999975
Q ss_pred CCCCHH----HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 66 DAMKPH----EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 66 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+....+ ....... . ....+.++++||+++.|++++++++.+.+
T Consensus 151 s~~~~~~~~~~~~~~~~-~--~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 151 ASGARKAQLNMVREAVL-A--FNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CHHHHHHHHHHHHHHHG-G--GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHH-h--cCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 522111 1111111 1 11245788999999999999999988654
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-11 Score=79.29 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=61.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||... ........+|++++|+|+........ +. .....+|+++|+||+|+.+..... ++.+.
T Consensus 178 DTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~-------l~--~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~ 245 (355)
T 3p32_A 178 ETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQG-------IK--KGVLELADIVVVNKADGEHHKEARLAARELSAA 245 (355)
T ss_dssp EECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTT-------CC--TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHH
T ss_pred eCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHH-------HH--HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHH
Confidence 6888432 22334588999999999875433211 10 112346999999999986422221 22222
Q ss_pred hCCCccC--CCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIR--DRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~--~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+...... ..+.+++.+||+++.|++++++++.+.+
T Consensus 246 l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 246 IRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred HhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 1110000 1235799999999999999999987654
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-10 Score=75.97 Aligned_cols=103 Identities=18% Similarity=0.132 Sum_probs=63.4
Q ss_pred CCCCcc-------------CchhhHHhhhcCCcEEEE-EEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQD-------------KIRPLWRHYYTGTQGLIF-VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~-------------~~~~~~~~~~~~~~~vi~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||.. .++.+...|+..++.+++ |+|.+....-.+...+++.+. ..+.|+++|+||+|+.+
T Consensus 136 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~----~~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 136 DLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD----PQGQRTIGVITKLDLMD 211 (353)
T ss_dssp ECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC----TTCTTEEEEEECGGGSC
T ss_pred ECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC----cCCCceEEEeccccccC
Confidence 789963 456677788877765555 556554222222234555552 25789999999999865
Q ss_pred CCC-HHHHHHHhCCCccCCCC-eEEEeccccCCCCHHHHHHHHHh
Q psy17510 67 AMK-PHEIQEKLGLTRIRDRN-WYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 67 ~~~-~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
... ..++.+ ........+ .+++.+||+++.|++++++++..
T Consensus 212 ~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 212 EGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TTCCCHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred cchhHHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 432 222222 111111123 46889999999999999988765
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=73.02 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=61.9
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc-CCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecc
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
....++.++.++|++ ...+.....+.+++.... .....|.++++||+|+........+.+... ..+++++.+|
T Consensus 232 ~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iS 305 (416)
T 1udx_A 232 HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVS 305 (416)
T ss_dssp HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECC
T ss_pred HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEE
Confidence 456899999999997 445555555555543321 123579999999999875311122222221 2345789999
Q ss_pred ccCCCCHHHHHHHHHhhc
Q psy17510 94 ATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~~~ 111 (113)
|+++.|++++++++.+.+
T Consensus 306 A~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 306 ALTGAGLPALKEALHALV 323 (416)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHH
Confidence 999999999999998764
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-10 Score=76.23 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCCCccCc-------------hhhHHhhhcCCcEEEEEEECCChhhH-HHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKI-------------RPLWRHYYTGTQGLIFVVDCADRDRI-DEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~-------------~~~~~~~~~~~~~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||..++ ..+...|+.++|++|+|+|.++.... .....++..+. ..+.|+++|+||+|+.+
T Consensus 142 DtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~----~~~~~~i~V~nK~Dl~~ 217 (360)
T 3t34_A 142 DLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD----PSGDRTFGVLTKIDLMD 217 (360)
T ss_dssp ECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSC----TTCTTEEEEEECGGGCC
T ss_pred ECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhc----ccCCCEEEEEeCCccCC
Confidence 89998887 67788899999999999987653322 22233344432 25689999999999865
Q ss_pred CCC-HHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHH
Q psy17510 67 AMK-PHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLT 105 (113)
Q Consensus 67 ~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 105 (113)
... ..++.+. .....+.+++.+|+.++.++++.+.
T Consensus 218 ~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 218 KGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp TTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCC
T ss_pred CcccHHHHHcC----ccccccCCeEEEEECChHHhccCCC
Confidence 322 2222221 1123445688899988877765433
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=76.52 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=76.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC---HHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~ 77 (113)
|||||..|..-....+.-+|++|+|+|+...-. ..+...++.+.+ .++|.++++||+|.....- ..++.+.+
T Consensus 73 DTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~-~qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l 147 (638)
T 3j25_A 73 DTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQ-AQTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKL 147 (638)
T ss_dssp ECCCSSSTHHHHHHHHTTCSEEECCEESSCTTC-SHHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTT
T ss_pred ECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHh
Confidence 899999999999999999999999999986421 223455556644 4689999999999765322 22333322
Q ss_pred CCCc--------------------------------------------------------cCCCCeEEEeccccCCCCHH
Q psy17510 78 GLTR--------------------------------------------------------IRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 78 ~~~~--------------------------------------------------------~~~~~~~~~~~sa~~~~~i~ 101 (113)
+... ....-.|++..||+++.|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~ 227 (638)
T 3j25_A 148 SAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGID 227 (638)
T ss_dssp CCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHH
T ss_pred CCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCch
Confidence 2110 00123578889999999999
Q ss_pred HHHHHHHhhcC
Q psy17510 102 EGLTWLTSNHK 112 (113)
Q Consensus 102 ~~~~~l~~~~~ 112 (113)
.+++.+...+.
T Consensus 228 ~LLd~i~~~~p 238 (638)
T 3j25_A 228 NLIEVITNKFY 238 (638)
T ss_dssp HHHHHHHHSCC
T ss_pred hHhhhhhcccc
Confidence 99999987653
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=77.27 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=61.8
Q ss_pred hhhHHhhh-cCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCCCccCCCC
Q psy17510 9 RPLWRHYY-TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGLTRIRDRN 86 (113)
Q Consensus 9 ~~~~~~~~-~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~ 86 (113)
..+...|+ ..+|++++|+|++......+...++..+.. .+.|+++|+||+|+.+.... ..+.. ..........
T Consensus 177 ~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~----~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~ 251 (772)
T 3zvr_A 177 RDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGY 251 (772)
T ss_dssp HHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT----TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCE
T ss_pred HHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh----cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccC
Confidence 34555565 578999999999865433333345555532 47899999999998654321 22222 1111111123
Q ss_pred eEEEeccccCCCCHHHHHHHHHh
Q psy17510 87 WYVQPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 87 ~~~~~~sa~~~~~i~~~~~~l~~ 109 (113)
.+++.+||+++.|++++++.+..
T Consensus 252 ~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 252 IGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp EECCCCCCEESSSSEEHHHHHHH
T ss_pred CceEEecccccccchhHHHHHHH
Confidence 46889999999999998888765
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=8e-10 Score=68.72 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=40.0
Q ss_pred CCCCc-----------cCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC-cCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQ-----------DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~-----------~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||. +.+...+..++.++|++++|+|+++.... ...++..+... ......|+++++||+|+.+.
T Consensus 84 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp ECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred ECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 79993 35556666677889999999998753321 12222222110 00124699999999998654
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-08 Score=70.31 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=49.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
|||||-.|..-....+.-+|++|+|+|+...- -..+...++++.+ .++|.++++||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV-~~qT~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGV-EPQSETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEccccccC
Confidence 99999999999999999999999999998642 2234556666654 4799999999999754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-09 Score=67.26 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=53.7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhCCCccCCCCeEEEecccc
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCAT 95 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 95 (113)
.++.+++|+|++...... ..+.. . .+.|+++++||+|+.+. ....++.+.... . ...++++++||+
T Consensus 129 ~~~~~i~vvd~~~~~~~~--~~~~~-~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~--~-~~~~~i~~~Sa~ 196 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDDVV--EKHPE-I------FRVADLIVINKVALAEAVGADVEKMKADAKL--I-NPRAKIIEMDLK 196 (221)
T ss_dssp SCSEEEEEEEGGGCTTHH--HHCHH-H------HHTCSEEEEECGGGHHHHTCCHHHHHHHHHH--H-CTTSEEEECBTT
T ss_pred ccCcEEEEEeCCCcchhh--hhhhh-h------hhcCCEEEEecccCCcchhhHHHHHHHHHHH--h-CCCCeEEEeecC
Confidence 578889999987643211 11111 1 24789999999998542 234443333221 1 234679999999
Q ss_pred CCCCHHHHHHHHHhhc
Q psy17510 96 TADGLYEGLTWLTSNH 111 (113)
Q Consensus 96 ~~~~i~~~~~~l~~~~ 111 (113)
++.|++++++++.+.+
T Consensus 197 ~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 197 TGKGFEEWIDFLRGIL 212 (221)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998754
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-09 Score=71.51 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=58.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||....... ....+|++++|+|++...... .+... ..++|.++++||+|+.+..... ++.+.
T Consensus 155 DTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~----~l~~~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~ 222 (341)
T 2p67_A 155 ETVGVGQSETE---VARMVDCFISLQIAGGGDDLQ----GIKKG-----LMEVADLIVINKDDGDNHTNVAIARHMYESA 222 (341)
T ss_dssp EEECCTTHHHH---HHTTCSEEEEEECC------C----CCCHH-----HHHHCSEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred eCCCccchHHH---HHHhCCEEEEEEeCCccHHHH----HHHHh-----hhcccCEEEEECCCCCChHHHHHHHHHHHHH
Confidence 78887554433 458999999999987542211 11000 0146889999999986532221 22221
Q ss_pred hCC-Ccc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGL-TRI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~-~~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.. ... .....+++.+||+++.|++++++++.+.+
T Consensus 223 l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 223 LHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp HHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 111 100 00134789999999999999999987643
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=73.78 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=49.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+.+|...+..++..+|++|+|+|+++..+......|. .... .++|+++++||+|+.
T Consensus 104 DTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 104 DSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHH
T ss_pred ECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcc
Confidence 89999999999999999999999999999876666544443 3322 468999999999975
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.9e-09 Score=72.07 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=48.8
Q ss_pred CCCCccC-----------chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 1 DVGGQDK-----------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 1 D~~G~~~-----------~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
||||... |...+..++..+|++++|+|+++.........++..+.+ .+.|+++|+||+|+.+.
T Consensus 160 DTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 160 DTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVET 233 (550)
T ss_dssp ECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCH
T ss_pred ECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCH
Confidence 7999875 567777889999999999999875444555666666633 35799999999998653
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-09 Score=67.27 Aligned_cols=93 Identities=11% Similarity=-0.006 Sum_probs=58.7
Q ss_pred CCccC-chhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCc
Q psy17510 3 GGQDK-IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTR 81 (113)
Q Consensus 3 ~G~~~-~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~ 81 (113)
|||.. ..+.....++.+|+++.|+|+.++.+.... .+. + . ++|.+++.||+|+.+....+...+.+.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~--- 72 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK--- 72 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH---
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH---
Confidence 67653 334556688999999999999987443210 111 1 1 789999999999976321222222221
Q ss_pred cCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 82 IRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 82 ~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..+.++ .+||+++.|++++++.+...
T Consensus 73 --~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 73 --KQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp --HTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred --HcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 123456 89999999999999877553
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-08 Score=66.48 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=55.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~ 76 (113)
||+|.... .......+|++++|+|++.+....... ..+ ...|.++++||+|+.+... ..++...
T Consensus 173 DT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i------l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~ 240 (349)
T 2www_A 173 ETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI------IEMADLVAVTKSDGDLIVPARRIQAEYVSA 240 (349)
T ss_dssp ECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHH
T ss_pred ECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH------HhcCCEEEEeeecCCCchhHHHHHHHHHHH
Confidence 67785311 233467899999999997643221111 111 2468899999999854211 1112222
Q ss_pred hCCCcc--CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRI--RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~--~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...... .....+++.+||+++.|++++++++.+.+
T Consensus 241 l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 241 LKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 221100 01134788999999999999999987653
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-08 Score=62.74 Aligned_cols=65 Identities=11% Similarity=-0.023 Sum_probs=41.4
Q ss_pred CCCCccCchhhHHhhhc---------CCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-CCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYT---------GTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~---------~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~ 65 (113)
||||++.+..+.+.+++ ++|++++|++.+..........|+..+..... ....|+++++||+|+.
T Consensus 90 DTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 90 DTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred ECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 89999887655444433 78999999988754321222344444433210 1125999999999985
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-09 Score=67.76 Aligned_cols=85 Identities=12% Similarity=0.024 Sum_probs=39.7
Q ss_pred CcEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCC
Q psy17510 19 TQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTA 97 (113)
Q Consensus 19 ~~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 97 (113)
+++++|+.+++.. +++.. ..++..+. .+.|+++|+||+|+.+....... ...........+++++++||+++
T Consensus 127 a~~ll~ldePt~~-~Ld~~~~~~l~~l~-----~~~~iilV~~K~Dl~~~~e~~~~-~~~~~~~~~~~~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 127 VHCCFYFISPFGH-GLKPLDVAFMKAIH-----NKVNIVPVIAKADTLTLKERERL-KKRILDEIEEHNIKIYHLPDAES 199 (301)
T ss_dssp CCEEEEEECSSSS-SCCHHHHHHHHHHT-----TTSCEEEEECCGGGSCHHHHHHH-HHHHHHHHHHTTCCCCCCC----
T ss_pred hhheeeeecCccc-CCCHHHHHHHHHHH-----hcCCEEEEEEeCCCCCHHHHHHH-HHHHHHHHHHcCCeEEecCCccc
Confidence 3446666665421 22222 23444441 45799999999998652111100 11111111223457889999999
Q ss_pred CCHHHHHHHHHhhc
Q psy17510 98 DGLYEGLTWLTSNH 111 (113)
Q Consensus 98 ~~i~~~~~~l~~~~ 111 (113)
|++++|.++.+.+
T Consensus 200 -~v~e~f~~l~~~i 212 (301)
T 2qnr_A 200 -DEDEDFKEQTRLL 212 (301)
T ss_dssp ------CHHHHHHH
T ss_pred -cccHHHHHHHHHh
Confidence 9999999887654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-08 Score=66.07 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=60.3
Q ss_pred CchhhHHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC----HHHHHHHhCCCc
Q psy17510 7 KIRPLWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK----PHEIQEKLGLTR 81 (113)
Q Consensus 7 ~~~~~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~ 81 (113)
|-+.+.+...+++|.+++|+|+.+|. +......++..... .++|.+++.||+|+.+... .+++.+.+.
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~--- 147 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYR--- 147 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH---
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHH---
Confidence 33445666789999999999998654 44444555544422 5789999999999976422 123333321
Q ss_pred cCCCCeEEEeccccCCCCHHHHHHH
Q psy17510 82 IRDRNWYVQPSCATTADGLYEGLTW 106 (113)
Q Consensus 82 ~~~~~~~~~~~sa~~~~~i~~~~~~ 106 (113)
..+.+++.+||.++.|++++++.
T Consensus 148 --~~g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 148 --NIGYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp --HHTCCEEECCHHHHTTCTTTGGG
T ss_pred --hCCCeEEEEecCCCCCHHHHHhh
Confidence 12346889999998887776653
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.4e-10 Score=73.30 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHH
Q psy17510 52 DAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGL 104 (113)
Q Consensus 52 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 104 (113)
.+|+++++||+|+........+.+.+. ..+.+++.+||+.+.|+.+++
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~-----~~~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEE-----KRGYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHH-----HTTCEEEEECHHHHHHHHSCS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHh-----hcCCcEEEEeccchhhHHHHH
Confidence 489999999999762111222222221 113468899999988887653
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-07 Score=59.38 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=40.6
Q ss_pred CCCCccCchhh-------HHhh--hcCCcEEEEEEECCChhhHHH-HHHHHHHHHcCcC-CCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPL-------WRHY--YTGTQGLIFVVDCADRDRIDE-ARQELHRIINDRE-MRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~-------~~~~--~~~~~~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~ 66 (113)
||||+..+..+ +..| ..++|++++|+|++.. ++.. ...|+..+..... ...+|+++|+||+|+.+
T Consensus 93 DTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 93 DTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred ECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 89999776532 1122 3479999999988653 2322 2355555533210 01269999999999865
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.34 E-value=2e-06 Score=56.68 Aligned_cols=87 Identities=20% Similarity=0.109 Sum_probs=54.4
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccc
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 94 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 94 (113)
..+++|.+++|.+.....+......++..... .++|.++|.||+|+.+......+.+... .+...+++++.+||
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~--~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMD--IYRNIGYRVLMVSS 200 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHH--HHHTTTCCEEECBT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHH--HHHhCCCcEEEEec
Confidence 36789999988765422344444455544322 4688899999999865321111111111 12234567899999
Q ss_pred cCCCCHHHHHHHH
Q psy17510 95 TTADGLYEGLTWL 107 (113)
Q Consensus 95 ~~~~~i~~~~~~l 107 (113)
.++.|++++...+
T Consensus 201 ~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 201 HTQDGLKPLEEAL 213 (358)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHHhc
Confidence 9999999887654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-07 Score=63.57 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=34.4
Q ss_pred cEEEEEEECCChhhHHHH-HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHH--HhCCCccCCCCeEEEeccccC
Q psy17510 20 QGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE--KLGLTRIRDRNWYVQPSCATT 96 (113)
Q Consensus 20 ~~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~sa~~ 96 (113)
|+++|+.+++. .+++.. ..|+..+. .++|+++|+||+|+... .++.. ......+...+++++++|+++
T Consensus 140 ~vlL~ldePt~-~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~---~ev~~~k~~i~~~~~~~~i~~~~~sa~~ 210 (418)
T 2qag_C 140 QCCLYFIAPSG-HGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTP---EECQQFKKQIMKEIQEHKIKIYEFPETD 210 (418)
T ss_dssp CEEEEECCC-C-CSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCH---HHHHHHHHHHHHHHHHHTCCCCCCC---
T ss_pred eEEEEEecCcc-cCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccH---HHHHHHHHHHHHHHHHcCCeEEeCCCCC
Confidence 34555555431 233333 35666662 36899999999998652 22221 001111112345677999999
Q ss_pred CCCHHHHHHHHHhhc
Q psy17510 97 ADGLYEGLTWLTSNH 111 (113)
Q Consensus 97 ~~~i~~~~~~l~~~~ 111 (113)
+.++.+++..+...+
T Consensus 211 ~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 211 DEEENKLVKKIKDRL 225 (418)
T ss_dssp --------------C
T ss_pred CcCHHHHHHHHHhhC
Confidence 999998888776654
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-07 Score=55.96 Aligned_cols=56 Identities=23% Similarity=0.238 Sum_probs=39.1
Q ss_pred CeEEEEEeCCCCCCC--CCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 53 AIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 53 ~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.|.++++||+|+.+. ....++.+.... . ...++++++||+++.|++++|+++.+.+
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~--~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKR--I-NPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHH--H-CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHH--h-CCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 577999999998542 233333332221 0 2345799999999999999999998754
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.8e-06 Score=55.54 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=54.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-----HHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-----PHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-----~~~~~~ 75 (113)
||+|...-.. .....+|.+++++|++........... + ...|.++++||+|+.+... .+.+..
T Consensus 154 DT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i------~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~ 221 (337)
T 2qm8_A 154 ETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---I------FELADMIAVNKADDGDGERRASAAASEYRA 221 (337)
T ss_dssp EECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---H------HHHCSEEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred ECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---H------hccccEEEEEchhccCchhHHHHHHHHHHH
Confidence 6777643222 234689999999998643211100000 0 1245677889999743211 122322
Q ss_pred HhCCCccC--CCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 76 KLGLTRIR--DRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 76 ~~~~~~~~--~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
......-. ....+++.+||+++.|++++++.+.+.
T Consensus 222 a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 222 ALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 22211100 012368889999999999999988764
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00014 Score=47.99 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=23.6
Q ss_pred CCCCccCchh-------hHHhhhcCCcEEEEEEECCC
Q psy17510 1 DVGGQDKIRP-------LWRHYYTGTQGLIFVVDCAD 30 (113)
Q Consensus 1 D~~G~~~~~~-------~~~~~~~~~~~vi~v~d~~~ 30 (113)
||||+.++.. .+..++..+|++++|+|+++
T Consensus 72 DtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 72 DIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp ECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 8999987642 23346789999999999985
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=97.83 E-value=5.6e-05 Score=50.01 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=23.1
Q ss_pred CCCCccCch-------hhHHhhhcCCcEEEEEEECCC
Q psy17510 1 DVGGQDKIR-------PLWRHYYTGTQGLIFVVDCAD 30 (113)
Q Consensus 1 D~~G~~~~~-------~~~~~~~~~~~~vi~v~d~~~ 30 (113)
||||+.++. ..+..++..+|++++|+|+++
T Consensus 75 DtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 75 DIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp ECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 799987652 233446889999999999985
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0048 Score=42.49 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=57.9
Q ss_pred CCCCccCch-hhHHh---h--hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeE-EEEEeCCCCCCCCCH-HH
Q psy17510 1 DVGGQDKIR-PLWRH---Y--YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQDLPDAMKP-HE 72 (113)
Q Consensus 1 D~~G~~~~~-~~~~~---~--~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~~-~~ 72 (113)
||||..... .++.. . ...+|.+++|+|+..... .......+.. .+|+ .+|+||+|....... -.
T Consensus 190 DTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~-----~~~i~gvVlNK~D~~~~~g~~l~ 261 (504)
T 2j37_W 190 DTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD-----KVDVASVIVTKLDGHAKGGGALS 261 (504)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH-----HHCCCCEEEECTTSCCCCTHHHH
T ss_pred eCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh-----hcCceEEEEeCCccccchHHHHH
Confidence 788876432 22211 1 227899999999986432 1122222211 2575 899999998643332 23
Q ss_pred HHHHhCCCc--------cCC--CCeEEEeccccCCCC-HHHHHHHHHhh
Q psy17510 73 IQEKLGLTR--------IRD--RNWYVQPSCATTADG-LYEGLTWLTSN 110 (113)
Q Consensus 73 ~~~~~~~~~--------~~~--~~~~~~~~sa~~~~~-i~~~~~~l~~~ 110 (113)
+...++.+. +.. ...+...+|+..|.| +..+++++.+.
T Consensus 262 ~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 262 AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 334443221 000 111345689999999 99999888754
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0026 Score=42.27 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=32.8
Q ss_pred hhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 14 HYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
.....||++++|+|++++.. .+.....+.... ....++|..++.||.|..
T Consensus 145 ~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 145 AVARTCNLLFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSSS
T ss_pred HHHHhcCccccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhhh
Confidence 45678999999999998632 222223333331 123567889999999963
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.29 Score=29.81 Aligned_cols=68 Identities=18% Similarity=0.105 Sum_probs=46.6
Q ss_pred hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 11 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 11 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
.....+..+|.+++++.++ ..+.......++.+.+.. .....+.++.|+.+.......+++.+.++..
T Consensus 133 ~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~ 200 (245)
T 3ea0_A 133 VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFE-KPISRIEIILNRADTNSRITSDEIEKVIGRP 200 (245)
T ss_dssp THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCS-SCCSCEEEEEESTTSCTTSCHHHHHHHHTSC
T ss_pred HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhC-CCccceEEEEecCCCCCCCCHHHHHHHhCCC
Confidence 3344577899999999875 456666677777665431 1245688999999976656667777776653
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.013 Score=39.13 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=19.6
Q ss_pred CCCCccCchh-------hHHhhhcCCcEEEEEEECCC
Q psy17510 1 DVGGQDKIRP-------LWRHYYTGTQGLIFVVDCAD 30 (113)
Q Consensus 1 D~~G~~~~~~-------~~~~~~~~~~~vi~v~d~~~ 30 (113)
||||+.+..+ .+..++..+|++++|+|+++
T Consensus 92 DtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 92 DIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 7999877554 56678899999999999975
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.21 Score=29.59 Aligned_cols=61 Identities=10% Similarity=-0.023 Sum_probs=39.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-CCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~ 65 (113)
|+|+.. .......+..+|.+++++.++.. + ......++.+.+... ..+.++.++.|+.+..
T Consensus 82 D~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 82 DGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp ECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred ECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 566654 33344566679999999988754 3 555566665543221 2356889999999854
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.68 Score=30.80 Aligned_cols=52 Identities=17% Similarity=0.044 Sum_probs=36.7
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 51 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..+|++++.||+|..+ .+++....... .++.+|+..+.|++.+.+...+.+.
T Consensus 248 ~~~p~i~v~nKid~~~---~eele~l~~~~-------~~~~is~~~e~gLd~Li~~~y~~L~ 299 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSLS---IEELELLYRIP-------NAVPISSGQDWNLDELLQVMWDRLN 299 (376)
T ss_dssp EEECEEEEEECGGGSC---HHHHHHHTTST-------TEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hccceEEEEecccccC---HHHHHHHhccc-------chhhhhhhhcccchhHHHHHHHHcC
Confidence 4579999999999643 44443332221 2568899999999999888776654
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.2 Score=31.57 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=30.0
Q ss_pred hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 15 YYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
.+.++++.++++|..... ...+ ...++.+.. . +++++++||+|...
T Consensus 108 ~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 108 PDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----V-VNIIPVIAKADTMT 154 (270)
T ss_dssp CCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----T-SEEEEEETTGGGSC
T ss_pred hhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----c-CcEEEEEeccccCC
Confidence 345679999999965321 1111 445555532 2 89999999999755
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.1 Score=35.30 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=13.8
Q ss_pred CCCeEEEEEeCCCCCC
Q psy17510 51 RDAIILIFANKQDLPD 66 (113)
Q Consensus 51 ~~~p~ilv~nK~D~~~ 66 (113)
.++|++++.||+|...
T Consensus 175 ~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 175 SKVNIIPIIAKADAIS 190 (427)
T ss_dssp SCSEEEEEESCGGGSC
T ss_pred hCCCEEEEEcchhccc
Confidence 5789999999999754
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=91.48 E-value=1 Score=27.91 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=34.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~ 64 (113)
|+|+......+.......+|.+|++..++. .+.......++.+.+ .+.+++ ++.|+.+.
T Consensus 135 D~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 135 DLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEE----TNTSVLGLVENMSYF 194 (262)
T ss_dssp ECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHT----TTCCEEEEEETTCCE
T ss_pred ECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHh----CCCCEEEEEECCCcc
Confidence 566543322222222236899999987763 355556666666543 356666 89999873
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=90.83 E-value=0.78 Score=27.53 Aligned_cols=50 Identities=8% Similarity=-0.050 Sum_probs=34.7
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
...+..+|.+|+++.++ ..+.......++.+.+. .+.++.++.|+.+...
T Consensus 85 ~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 85 EALADGCDLLVIPSTPD-ALALDALMLTIETLQKL---GNNRFRILLTIIPPYP 134 (209)
T ss_dssp HHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred HHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence 44667899999999876 44566666666665442 2467889999998653
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=90.62 E-value=1.8 Score=26.76 Aligned_cols=49 Identities=4% Similarity=-0.096 Sum_probs=33.3
Q ss_pred HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCC
Q psy17510 12 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63 (113)
Q Consensus 12 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 63 (113)
....+..+|.+|+++.++. .+.......++.+... ..+.++.++.|+..
T Consensus 160 ~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 160 LKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL--NLFLPIFLIITRFK 208 (267)
T ss_dssp HHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT--TCCCCEEEEEEEEC
T ss_pred HHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH--hccCCEEEEEeccc
Confidence 3445667999999998863 4556555665555433 13567889999994
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=90.06 E-value=1.1 Score=30.27 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=34.4
Q ss_pred CCCCccCchh-hHH---h--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-e-EEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRP-LWR---H--YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA-I-ILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~-~~~---~--~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~D~~~ 66 (113)
||||...... +.. . ....+|.+++|+|+.... +.......+. ... | ..++.||+|...
T Consensus 187 DT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~-----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 187 DTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK-----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp ECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH-----TTSCSCEEEEEECSSSCS
T ss_pred cCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh-----hcccCCeEEEEeCCCCcc
Confidence 7899765432 221 1 122689999999987542 1222233332 234 5 789999999754
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=89.76 E-value=2.1 Score=25.74 Aligned_cols=73 Identities=10% Similarity=0.029 Sum_probs=45.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~ 79 (113)
|+|+... ......+..+|.+++++.++ ..+.......++.+.+. ...++-++.|+.+.... ....++.+.++.
T Consensus 118 D~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~ 191 (237)
T 1g3q_A 118 DCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPEAAEDVMEV 191 (237)
T ss_dssp ECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHHHHHHHHCS
T ss_pred ECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHHHHHHHhCc
Confidence 4555433 33345677899999999775 44566666666666442 22456789999986433 345566666554
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=88.57 E-value=1.3 Score=27.13 Aligned_cols=77 Identities=6% Similarity=-0.023 Sum_probs=46.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcC-----CCCCeEEEEEeCCCCCC-----CCCH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-----MRDAIILIFANKQDLPD-----AMKP 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~p~ilv~nK~D~~~-----~~~~ 70 (113)
|+|+... ......+..+|.+++++.++ ..+.......+..+..... ....++.+|.|+.+... ....
T Consensus 120 D~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~ 196 (260)
T 3q9l_A 120 DSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSM 196 (260)
T ss_dssp ECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCH
T ss_pred cCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccccccccCH
Confidence 5565332 34455667899999999875 4566666666666643210 02257889999987421 1234
Q ss_pred HHHHHHhCCC
Q psy17510 71 HEIQEKLGLT 80 (113)
Q Consensus 71 ~~~~~~~~~~ 80 (113)
+++.+.++..
T Consensus 197 ~~~~~~~~~~ 206 (260)
T 3q9l_A 197 EDVLEILRIK 206 (260)
T ss_dssp HHHHHHHCSE
T ss_pred HHHHHHhCCc
Confidence 5666666543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=88.42 E-value=1.1 Score=30.46 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=33.1
Q ss_pred CCCCccCchh-hHH-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRP-LWR-----HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~-~~~-----~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||+|...... +.. .....+|.+++|+|+...... ......+... -.+..+|.||.|...
T Consensus 189 DTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 189 DTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDGSA 253 (443)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSSCS
T ss_pred ECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCCcc
Confidence 7888644321 111 123357999999999754322 2222333221 135578999999753
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=87.96 E-value=1.6 Score=27.95 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=34.3
Q ss_pred CCCCccC--ch-hhHH-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCC
Q psy17510 1 DVGGQDK--IR-PLWR-----HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~--~~-~~~~-----~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~ 66 (113)
||||... .. .+.. .....+|.+++|+|+... .+.....+.+.. ..| ..++.||.|...
T Consensus 187 DTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 187 DTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp ECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGGGCT
T ss_pred eCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCCCCc
Confidence 7898876 32 2221 124478999999998643 222222333321 245 678999999643
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=85.48 E-value=2.2 Score=26.27 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=35.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHH---HHHHHHcCcCCCCCeEE-EEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ---ELHRIINDREMRDAIIL-IFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~p~i-lv~nK~D~~~ 66 (113)
|+|+.... .....+..+|.+|+++.++. .+...... .++.+.+. ...+.+++ ++.|+.+...
T Consensus 118 D~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 118 DAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAG-LNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp ECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHH-TCTTCEEEEEEEESBCTTC
T ss_pred eCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHH-hCCCceEEEEEEEeECCCc
Confidence 56654332 22334567999999998864 34444333 33333221 11356764 8999998643
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=85.14 E-value=2.1 Score=26.34 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=36.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
|+|+... ......+..+|.+|+++.++ ..+.......++.+.+. ...++-++.|+.+..
T Consensus 117 D~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 117 DAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTL 175 (263)
T ss_dssp ECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTT
T ss_pred eCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc---CCCeeEEEEccCCcc
Confidence 5555433 33344566789999998765 34555555555555432 224567899999854
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=83.92 E-value=1.8 Score=26.15 Aligned_cols=60 Identities=13% Similarity=-0.025 Sum_probs=35.4
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG 78 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 78 (113)
...+..+|.+++++.++ ..++.......+..... ....+.++.|+.+.. ...+++.+.++
T Consensus 148 ~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~~~v~N~~~~~--~~~~~~~~~~~ 207 (254)
T 3kjh_A 148 RGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDL---GIKKVRYVINKVRNI--KEEKLIKKHLP 207 (254)
T ss_dssp HHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCSCEEEEEEEECCH--HHHHHHHHHSC
T ss_pred HHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHc---CCccEEEEEeCCCCh--hHHHHHHHHhc
Confidence 33557899999999875 44555555544433221 224678999999831 12334555544
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=83.82 E-value=3 Score=26.19 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=29.3
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCCCCC
Q psy17510 16 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDLP 65 (113)
Q Consensus 16 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~ 65 (113)
...+|.+++|+.... .+.......++.+.+ .+.+++ +|.|+.+..
T Consensus 212 ~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 212 SKFTGNVVYVVNSEN-NNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHCEEEEEEETTS-CCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred HHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence 346899999998764 345555555555543 345655 899999853
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=81.12 E-value=2.9 Score=28.39 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=25.0
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
..+.+++|+|+............+.+. -.+..++.||.|..
T Consensus 211 ~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 211 KPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDGT 251 (433)
T ss_dssp CCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGGC
T ss_pred CCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccccc
Confidence 468999999997543222222222221 13567899999964
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 113 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 7e-27 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 3e-17 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-16 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 1e-15 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-15 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 2e-14 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 2e-12 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-12 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 8e-12 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 5e-11 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 1e-10 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 2e-10 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 7e-10 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 7e-10 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 3e-09 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 1e-08 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 1e-08 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 7e-08 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 9e-08 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-07 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 6e-07 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 5e-05 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 2e-04 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 4e-04 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 8e-04 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 9e-04 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 95.4 bits (236), Expect = 7e-27
Identities = 109/112 (97%), Positives = 111/112 (99%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT+ DGLYEGLTWLTSN+K
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 71.1 bits (173), Expect = 3e-17
Identities = 50/108 (46%), Positives = 66/108 (61%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
GGQ KIRP WR Y+ T LI+V+D ADR R +E QEL ++ + ++ +LIFANKQ
Sbjct: 68 GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 127
Query: 63 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
DL A EI E L L IRDR W +Q A T +G+ +G+ W+ N
Sbjct: 128 DLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 68.1 bits (165), Expect = 2e-16
Identities = 72/110 (65%), Positives = 92/110 (83%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
DVGGQDKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FAN
Sbjct: 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQDLP+AM EI +KLGL +R RNWY+Q +CAT+ DGLYEGL WL++
Sbjct: 110 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 66.6 bits (161), Expect = 1e-15
Identities = 51/113 (45%), Positives = 75/113 (66%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ+ +R W YYT T+ +I VVD DR+RI R+EL++++ ++R A +LIFAN
Sbjct: 65 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 124
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113
KQD+ + M EI + L LT I+D W++Q CA T +GL +GL W+ S K+
Sbjct: 125 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 177
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 65.5 bits (158), Expect = 2e-15
Identities = 47/108 (43%), Positives = 67/108 (62%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
GGQ +R WR+Y+ T GLI+VVD ADR R+ + ++EL ++ + + A +LIFANKQ
Sbjct: 54 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 113
Query: 63 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
DLP A+ + IQE L L IR +W +Q A T + L G+ WL +
Sbjct: 114 DLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 161
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 63.8 bits (154), Expect = 2e-14
Identities = 50/110 (45%), Positives = 72/110 (65%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D+GGQ IRP WR YY T +IFVVD D+DR+ A +ELH ++ + E++DA +L+FAN
Sbjct: 67 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 126
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
KQD P A+ E+ ++L L ++DR+W + S A +G+ EGL WL
Sbjct: 127 KQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 176
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 58.6 bits (140), Expect = 2e-12
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
GG + R +W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK
Sbjct: 65 GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124
Query: 63 DLPDAMKPHEIQEKLGL------------TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110
D P+A+ ++E GL + R V G EG W+
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.8 bits (138), Expect = 2e-12
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 2 VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 61
+GG + R LW+ Y+ G++F+VD AD +R DEAR EL + N E++D +I NK
Sbjct: 51 LGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNK 110
Query: 62 QDLPDAMKPHEIQEKLGLTRI-------RDRNWYVQPSCATTADGLYEGLTWLT 108
D P+A+ E++ LGL R V +G E WL+
Sbjct: 111 IDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 56.6 bits (135), Expect = 8e-12
Identities = 32/108 (29%), Positives = 60/108 (55%)
Query: 5 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64
Q + R +W Y G ++++VD AD+++I+ ++ ELH +++ +++ +L+ NK+DL
Sbjct: 57 QPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 116
Query: 65 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
P A+ E+ EK+ L+ I+DR D + L WL + K
Sbjct: 117 PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 5e-11
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R L YY G QG+I V D RD + L+ + D + ++ N
Sbjct: 62 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 121
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
K D + K R + + A T DG+ L
Sbjct: 122 KIDKENREVDRNEGLKF----ARKHSMLFIEASAKTCDGVQCAFEELV 165
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.2 bits (127), Expect = 1e-10
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G+I V D D +Q + +N+ +A +L+ N
Sbjct: 57 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW-FKTVNEHANDEAQLLLVGN 115
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
K D+ + + G ++ S A D + E L
Sbjct: 116 KSDMETRVVTADQ----GEALAKELGIPFIESSAKNDDNVNEIFFTLA 159
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.8 bits (126), Expect = 2e-10
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 4/108 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G++ V D + D R + I +++
Sbjct: 61 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 120
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
E G D + A + L
Sbjct: 121 CDVNDKRQVSKER----GEKLALDYGIKFMETSAKANINVENAFFTLA 164
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.9 bits (123), Expect = 7e-10
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 12 WRHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDA--IILIFANKQDLPDAM 68
+ + + ++FVVD A R + + + L++++ D +LI NKQD+ A
Sbjct: 65 LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 124
Query: 69 KPHEIQEKL 77
IQ++L
Sbjct: 125 SAKLIQQQL 133
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 7e-10
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R L ++ G + + D + R + ++ + + I++ N
Sbjct: 70 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 129
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
K DLPD + +E Q + A T + + + L
Sbjct: 130 KADLPDQREVNERQ---ARELADKYGIPYFETSAATGQNVEKAVETLL 174
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.9 bits (118), Expect = 3e-09
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 33/141 (23%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR----------IDEARQELHRIINDREM 50
DVGGQ R W H + ++F+V ++ D+ ++E++ II
Sbjct: 51 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 110
Query: 51 RDAIILIFANKQDLPDAMKPHEIQEK-----------------------LGLTRIRDRNW 87
+++ +++F NK+DL + + + L D+
Sbjct: 111 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII 170
Query: 88 YVQPSCATTADGLYEGLTWLT 108
Y +CAT + + +
Sbjct: 171 YSHFTCATDTENIRFVFAAVK 191
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 1e-08
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + R YY G G + V D R+ + L IIL
Sbjct: 60 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 119
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
K D + ++ + A T + + E
Sbjct: 120 KDLDADREVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCA 163
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.2 bits (114), Expect = 1e-08
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCA----------DRDRIDEARQELHRIINDREMRD 52
GGQ R W + +IFVV + +R+ EA I N+R +R
Sbjct: 55 GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114
Query: 53 AIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWY 88
+++F NKQDL + EK+ + + +++
Sbjct: 115 ISVILFLNKQDL--------LAEKVLAGKSKIEDYF 142
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.0 bits (108), Expect = 7e-08
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 4/107 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G G I + D + + + + +I ++L+
Sbjct: 60 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK 119
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
+ + E + + + A + + L
Sbjct: 120 CDMEDERVVSSERGRQ----LADHLGFEFFEASAKDNINVKQTFERL 162
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (108), Expect = 9e-08
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + YY G+ G+I V D D++ + + + I+ + L+ N
Sbjct: 61 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW-LQEIDRYATSTVLKLLVGN 119
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
K DL D K + A + + + +
Sbjct: 120 KCDLKDKRVVEYDVAK---EFADANKMPFLETSALDSTNVEDAFLTMA 164
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 45.5 bits (106), Expect = 1e-07
Identities = 48/110 (43%), Positives = 67/110 (60%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
GG IRP WR YY+ T +I+VVD DRDRI ++ EL ++ + E+R AI+++FANKQ
Sbjct: 57 GGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQ 116
Query: 63 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112
D+ AM E+ LGL ++DR W + + AT GL E + WL K
Sbjct: 117 DMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 166
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.5 bits (101), Expect = 6e-07
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 4 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 63
GQ++ L YY Q + V D +AR + + +D II + NK D
Sbjct: 61 GQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKID 119
Query: 64 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
+ ++ + G ++ + A T + + + +
Sbjct: 120 MLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 5e-05
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 4/107 (3%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 60
D GQ++ R + + YY LI D + + L I + +L+
Sbjct: 60 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 119
Query: 61 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWL 107
+ E+ ++ ++ Y + A +D + + L
Sbjct: 120 IDL----AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 162
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.5 bits (83), Expect = 2e-04
Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 33/141 (23%)
Query: 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREM 50
DVGGQ R W H + G +IF V +D D R+ E+ + I N++
Sbjct: 48 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 107
Query: 51 RDAIILIFANKQ-----------------------DLPDAMKPHEIQEKLGLTRIRDRNW 87
D I++F NK+ +A + Q + R +
Sbjct: 108 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI 167
Query: 88 YVQPSCATTADGLYEGLTWLT 108
Y +CAT + +T
Sbjct: 168 YTHFTCATDTKNVQFVFDAVT 188
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.4 bits (80), Expect = 4e-04
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
GQ++ L YY G Q I V D + + A+ + + + +I + NK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKA 121
Query: 63 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
DL + + + + D + + A T+ + E +
Sbjct: 122 DLANKRAVDFQEAQ---SYADDNSLLFMETSAKTSMNVNEIFMAIA 164
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.9 bits (79), Expect = 8e-04
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 6/109 (5%)
Query: 3 GGQDKIRPLWRHYYTGTQGLI---FVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 59
GQ++ R L +Y G+ + V D + ++E + +E +I
Sbjct: 63 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122
Query: 60 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108
NK D+ + E + + ++ + A A +
Sbjct: 123 NKIDISERQVSTEEAQAW---CRDNGDYPYFETSAKDATNVAAAFEEAV 168
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.6 bits (78), Expect = 9e-04
Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 3 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 62
GQ++ R L Y + + V D + + + + + + +R D II++ NK
Sbjct: 57 AGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKT 115
Query: 63 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTS 109
DL D + + + + ++ N + A + + + +
Sbjct: 116 DLADKRQVSIEEGE---RKAKELNVMFIETSAKAGYNVKQLFRRVAA 159
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 113 | |||
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.94 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.93 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.93 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.93 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.92 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.88 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.88 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.88 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.87 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.87 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.87 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.87 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.87 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.87 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.87 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.86 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.85 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.85 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.84 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.83 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.83 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.82 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.82 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.82 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.82 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.8 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.78 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.78 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.75 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.73 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.62 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.62 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.6 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.58 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.58 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.56 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.53 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.51 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.5 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.49 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.49 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.47 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.47 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.44 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.42 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.39 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.37 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.36 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.28 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.25 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.24 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.16 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.07 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.05 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 98.98 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 98.97 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 98.85 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.77 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.75 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 98.73 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 98.6 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 98.56 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.55 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.41 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.1 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.02 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 97.49 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 96.45 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 96.21 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 93.85 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.75 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.69 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.94 E-value=1.6e-25 Score=132.47 Aligned_cols=112 Identities=97% Similarity=1.540 Sum_probs=102.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|+||++.++..+..++.+++++++|+|.++..++.....|+....+.....+.|+++++||+|+++.....++.+.+++.
T Consensus 62 D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~ 141 (173)
T d1e0sa_ 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 141 (173)
T ss_dssp EESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred cCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998888888776666789999999999998888888888888877
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.+....+++++|||++|+|++++|+||.+.++
T Consensus 142 ~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~k 173 (173)
T d1e0sa_ 142 RIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173 (173)
T ss_dssp GCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred HHHhCCCEEEEeeCCCCcCHHHHHHHHHHhcC
Confidence 77777899999999999999999999998764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.93 E-value=2.3e-25 Score=130.88 Aligned_cols=112 Identities=31% Similarity=0.700 Sum_probs=102.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|+||++.+...|..++..++++++|+|+++..+++....|+..+.+.....++|+++++||+|+.+..+..++.+..+..
T Consensus 53 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~ 132 (164)
T d1zd9a1 53 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLS 132 (164)
T ss_dssp EECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred eccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999988877666789999999999998878888888888877
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
......++++++||++|.|++++|+||+++++
T Consensus 133 ~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~k 164 (164)
T d1zd9a1 133 AIQDREICCYSISCKEKDNIDITLQWLIQHSK 164 (164)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred HHHhCCCEEEEEeCcCCcCHHHHHHHHHHccC
Confidence 77777899999999999999999999998764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.93 E-value=1.1e-25 Score=134.11 Aligned_cols=111 Identities=45% Similarity=0.885 Sum_probs=97.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|+||+++++.++..++..++++++|+|.+++.++.....|+....+.....+.|+++++||+|+.+..+..++.+.++..
T Consensus 67 D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~ 146 (182)
T d1moza_ 67 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLV 146 (182)
T ss_dssp EEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTT
T ss_pred ecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998888888776666789999999999998888888999988877
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
......+++++|||++|+|++++|+||.+.+
T Consensus 147 ~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i 177 (182)
T d1moza_ 147 ELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177 (182)
T ss_dssp TCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred HHhhCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 7777789999999999999999999998765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.93 E-value=5.1e-25 Score=130.44 Aligned_cols=111 Identities=46% Similarity=0.823 Sum_probs=98.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|+++++.++..++..+|++++|+|.++..++.....|+..+.......++|+++++||+|+.+......+.+.....
T Consensus 66 d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~ 145 (176)
T d1fzqa_ 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLH 145 (176)
T ss_dssp ECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred eccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998888888766556789999999999998877777787777766
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
......+++++|||++|+|++++|+||++.+
T Consensus 146 ~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~i 176 (176)
T d1fzqa_ 146 TIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (176)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred HHHhcCCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence 6666788999999999999999999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.92 E-value=2.3e-24 Score=126.47 Aligned_cols=111 Identities=44% Similarity=0.836 Sum_probs=98.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|++.++..+..++..++++++|+|.++..++.....++..........++|+++++||+|+++.....+....+...
T Consensus 52 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 131 (165)
T d1ksha_ 52 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELD 131 (165)
T ss_dssp EECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhh
Confidence 79999999999999999999999999999998999888888777666556789999999999998877887777777666
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+....+++++|||++|.|+.++|+||.+++
T Consensus 132 ~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i 162 (165)
T d1ksha_ 132 SIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162 (165)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 6666788999999999999999999998765
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.1e-25 Score=132.76 Aligned_cols=106 Identities=17% Similarity=0.119 Sum_probs=78.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|+++++.++..|++++|++|+|||++++.+++....|+..+........+|+++|+||+|+.+.. +..+. +.+.
T Consensus 54 D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~-~~~~ 132 (168)
T d2gjsa1 54 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG-RACA 132 (168)
T ss_dssp ECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHH-HHHH
T ss_pred ecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHH-HHHH
Confidence 79999999999999999999999999999999999999999988665445678999999999987642 22222 1111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++++++|||++|.|++++|++|++.+
T Consensus 133 ----~~~~~~~~e~Sak~~~~v~~~f~~l~~~i 161 (168)
T d2gjsa1 133 ----VVFDCKFIETSAALHHNVQALFEGVVRQI 161 (168)
T ss_dssp ----HHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----HhcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 11245789999999999999999998765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.6e-23 Score=123.23 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=88.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
|++|++.+..++..|+.++|++++|||++++.+++....|+..+.+....++.|+++|+||+|+..... .++......
T Consensus 57 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~ 136 (167)
T d1c1ya_ 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR 136 (167)
T ss_dssp EECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred cccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH
Confidence 689999999999999999999999999999999999999999887654456789999999999865432 222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. ..++++++|||++|.|++++|++|++.+.
T Consensus 137 -~---~~~~~~~e~Sak~g~gv~e~F~~l~~~i~ 166 (167)
T d1c1ya_ 137 -Q---WCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp -H---TTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred -H---hCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence 1 13467999999999999999999998764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3e-24 Score=128.25 Aligned_cols=106 Identities=18% Similarity=0.307 Sum_probs=86.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|+++|+.++..++++++++|+|||++++.+++....|+..+.........|+++|+||+|+.+.. +.++. +.+.
T Consensus 70 dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~-~~~~ 148 (186)
T d2f7sa1 70 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA-RELA 148 (186)
T ss_dssp EEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHH-HHHH
T ss_pred cCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHH-HHHH
Confidence 68999999999999999999999999999999999999999888766555778999999999986542 22222 2222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++++++|||++|.|++++|+++++.+
T Consensus 149 ----~~~~~~~~e~Sak~~~~i~e~f~~l~~~i 177 (186)
T d2f7sa1 149 ----DKYGIPYFETSAATGQNVEKAVETLLDLI 177 (186)
T ss_dssp ----HHTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12345689999999999999999998764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.88 E-value=1.1e-21 Score=113.80 Aligned_cols=111 Identities=65% Similarity=1.217 Sum_probs=99.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|.+.+...+..++..++++++++|.+++.++.....|+.++.........|+++++||.|+.+.....++.......
T Consensus 50 d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~ 129 (160)
T d1r8sa_ 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 129 (160)
T ss_dssp ECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred cCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998898888776666789999999999998877788887777766
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....++++++|||++|+|++++|+||++++
T Consensus 130 ~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 130 SLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence 6667789999999999999999999999864
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.88 E-value=3.4e-24 Score=126.33 Aligned_cols=107 Identities=18% Similarity=0.266 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
|++|++++..++..++++++++++|+|.+++.+++....|+.++.+.....+.|+++|+||+|+.+. .+.++..+ +.
T Consensus 58 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~-~~ 136 (168)
T d1u8za_ 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RA 136 (168)
T ss_dssp ECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH-HH
T ss_pred ccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHH-HH
Confidence 7899999999999999999999999999999999999999998876544578999999999998653 23333222 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...++++++|||++|.|++++|++|++.++
T Consensus 137 ----~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~ 166 (168)
T d1u8za_ 137 ----DQWNVNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp ----HHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----HHcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 123457899999999999999999998764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2e-23 Score=123.20 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=86.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||+|++++..++..++++++++++|||++++.+++....|+..+.+. ..+.|+++|+||+|+.+.....+...
T Consensus 58 D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~----- 130 (170)
T d1i2ma_ 58 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIV----- 130 (170)
T ss_dssp ECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHH--HCSCCEEEEEECCCCSCSCCTTTSHH-----
T ss_pred ccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhc--cCCCceeeecchhhhhhhhhhhHHHH-----
Confidence 79999999999999999999999999999999999999999988664 35799999999999976543322111
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....++++++|||++|.|++++|++|++.+
T Consensus 131 ~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 131 FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161 (170)
T ss_dssp HHSSCSSEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1223567899999999999999999998764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.2e-24 Score=125.68 Aligned_cols=107 Identities=19% Similarity=0.317 Sum_probs=86.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~ 79 (113)
|++|++++..++..++.+++++++|||.+++.+++....|+..+.+.....+.|+++|+||+|+.+... ..+....+..
T Consensus 60 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~ 139 (173)
T d2fn4a1 60 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA 139 (173)
T ss_dssp ECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHH
Confidence 799999999999999999999999999999999999999998886654446789999999999865422 1122222221
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..++++++|||++|.|++++|++|++.+
T Consensus 140 ----~~~~~~~e~Sak~g~gv~e~f~~l~~~i 167 (173)
T d2fn4a1 140 ----SHHVAYFEASAKLRLNVDEAFEQLVRAV 167 (173)
T ss_dssp ----HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----hcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 2346799999999999999999999865
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=7e-24 Score=125.40 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=83.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||+|++++ ++..|+.++|++|+|||++++.+++....|+..+.......++|+++|+||+|+.+. .+.++. +.+.
T Consensus 62 ~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~-~~~a 138 (172)
T d2g3ya1 62 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RACA 138 (172)
T ss_dssp TTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHHH
T ss_pred cccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHH-HHHH
Confidence 46677766 667799999999999999999999999999998876655568999999999998653 333332 2222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. ..++++++|||++|.|++++|++|++++.
T Consensus 139 ~----~~~~~~~e~Sak~g~~i~~~f~~l~~~i~ 168 (172)
T d2g3ya1 139 V----VFDCKFIETSAAVQHNVKELFEGIVRQVR 168 (172)
T ss_dssp H----HHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred H----HcCCeEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 1 12457899999999999999999998763
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.9e-23 Score=121.67 Aligned_cols=106 Identities=20% Similarity=0.313 Sum_probs=86.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
|++|++++..++..++..++++++|||.+++.+++....|+..+.... ..+.|+++|+||+|+.+... .++. ..+.
T Consensus 55 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~-~~~~ 132 (164)
T d1yzqa1 55 DTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEG-ERKA 132 (164)
T ss_dssp EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHH-HHHH
T ss_pred ccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHH-HHHH
Confidence 789999999999999999999999999999999999999998876542 25789999999999865332 2222 2222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...++++++|||++|.|++++|++|++.+.
T Consensus 133 ----~~~~~~~~e~SAk~g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 133 ----KELNVMFIETSAKAGYNVKQLFRRVAAALP 162 (164)
T ss_dssp ----HHTTCEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred ----HHcCCEEEEecCCCCcCHHHHHHHHHHhhC
Confidence 123457999999999999999999998764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=9.2e-23 Score=120.89 Aligned_cols=110 Identities=16% Similarity=0.220 Sum_probs=81.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|++.+..++..|+.++|++|+|||.+++.+++....|+....... ..+.|+++++||+|+.+.....+........
T Consensus 56 D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~ 134 (177)
T d1kmqa_ 56 DTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQE 134 (177)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHHHHHHHHHTTCC
T ss_pred ccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhhHHHHHHHhhcc
Confidence 789999999999999999999999999999999998876655544432 3579999999999986532211111111111
Q ss_pred cc---------CC-CCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RI---------RD-RNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~---------~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. .. ..+++++|||++|.|++++|+.+++.+
T Consensus 135 ~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 135 PVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175 (177)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 00 01 235799999999999999999998764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=1.2e-23 Score=124.09 Aligned_cols=106 Identities=15% Similarity=0.215 Sum_probs=86.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
|++|++++..++..|++++|++++|||++++.+++....|+..+.+.....+.|+++++||+|+.+.. +.++. ..+.
T Consensus 58 d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~-~~~~ 136 (169)
T d1x1ra1 58 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQG-KEMA 136 (169)
T ss_dssp ECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHH-HHHH
T ss_pred ccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhH-HHHH
Confidence 78999999999999999999999999999999999999999988665444678999999999987653 33332 2222
Q ss_pred CCccCCCCeEEEeccccCCC-CHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTAD-GLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~-~i~~~~~~l~~~~ 111 (113)
. ..++++++|||+++. |++++|+.|++.+
T Consensus 137 ~----~~~~~~~e~Sak~~~~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 137 T----KYNIPYIETSAKDPPLNVDKTFHDLVRVI 166 (169)
T ss_dssp H----HHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred H----HcCCEEEEEcCCCCCcCHHHHHHHHHHHH
Confidence 1 123468899999886 9999999999865
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.5e-23 Score=123.70 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=84.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||||++++..++..++++++++++|+|.+++.+++....|+..+.+. .....|+++++||+|+.+.. ..++. +.+.
T Consensus 60 Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~-~~~~ 137 (171)
T d2ew1a1 60 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRA-EEFS 137 (171)
T ss_dssp EECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHH-HHHH
T ss_pred ECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHH-HHHH
Confidence 89999999999999999999999999999999999999888887553 23578999999999986532 23222 2222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..++++++|||++|.|++++|.++++.+
T Consensus 138 ~----~~~~~~~~~SAktg~gV~e~f~~l~~~l 166 (171)
T d2ew1a1 138 E----AQDMYYLETSAKESDNVEKLFLDLACRL 166 (171)
T ss_dssp H----HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H----hCCCEEEEEccCCCCCHHHHHHHHHHHH
Confidence 1 1345689999999999999999988654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=3e-23 Score=122.24 Aligned_cols=105 Identities=19% Similarity=0.286 Sum_probs=84.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||++++..++..+++++|++|+|||.+++.++.....|+...... .....|+++++||+|+.+... .++. +.+.
T Consensus 60 Dt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~-~~~~ 137 (169)
T d3raba_ 60 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERG-RQLA 137 (169)
T ss_dssp EECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHH-HHHH
T ss_pred ECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhh-HHHH
Confidence 89999999999999999999999999999999999888888766443 246789999999999876432 2322 2222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..++++++|||++|.|++++|+++++.+
T Consensus 138 ~----~~~~~~~e~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 138 D----HLGFEFFEASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp H----HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred H----HcCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence 1 1235799999999999999999999765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=6.5e-23 Score=120.55 Aligned_cols=106 Identities=18% Similarity=0.260 Sum_probs=86.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
|++|++++..++..++..++++++|||.+++.+++....|+..+... ...+.|+++|+||+|+.+. ...++. +.+.
T Consensus 59 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~-~~~~ 136 (167)
T d1z0ja1 59 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDA-KDYA 136 (167)
T ss_dssp EECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHH-HHHH
T ss_pred ecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHH-HHHH
Confidence 68999999999999999999999999999999999999888777543 2367899999999998653 233322 2222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...++++++|||++|.|++++|.+|+++++
T Consensus 137 ----~~~~~~~~e~SAk~~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 137 ----DSIHAIFVETSAKNAININELFIEISRRIP 166 (167)
T ss_dssp ----HHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ----HHcCCEEEEEecCCCCCHHHHHHHHHHhCC
Confidence 124567999999999999999999999875
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2e-22 Score=120.25 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=80.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------------ 68 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------ 68 (113)
||+|++++..++..++.++|++++|||++++.+++....|+....+.. ..+.|+++|+||+|+.+..
T Consensus 63 D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r 141 (185)
T d2atxa1 63 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEK 141 (185)
T ss_dssp CCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred cccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccc
Confidence 899999999999999999999999999999999988766555554432 3678999999999986531
Q ss_pred --CHHH---HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 --KPHE---IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 --~~~~---~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.++ +++.. ..+++++|||++|.|++++|+.+++.+
T Consensus 142 ~v~~~~~~~~a~~~-------~~~~~~E~SAk~~~gv~e~F~~li~~i 182 (185)
T d2atxa1 142 PICVEQGQKLAKEI-------GACCYVECSALTQKGLKTVFDEAIIAI 182 (185)
T ss_dssp CCCHHHHHHHHHHH-------TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHc-------CCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence 1111 11111 235689999999999999999998764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=1.1e-23 Score=123.64 Aligned_cols=104 Identities=22% Similarity=0.357 Sum_probs=85.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
||+|++++..++..++++++++++|||++++.+++....|+.++.+. ..++|+++|+||+|+.+.. +..+. +.+.
T Consensus 57 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~iilVgnK~Dl~~~~~v~~~~~-~~~~ 133 (164)
T d1z2aa1 57 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE--VGDIPTALVQNKIDLLDDSCIKNEEA-EGLA 133 (164)
T ss_dssp CCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--HCSCCEEEEEECGGGGGGCSSCHHHH-HHHH
T ss_pred ccCCccchhhhhhhhhccCceEEEEEeccchhhhhhccccccccccc--CCCceEEEeeccCCcccceeeeehhh-HHHH
Confidence 79999999999999999999999999999999999999999988654 3579999999999986532 22222 2222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..++++++|||++|.|++++|++|++.+
T Consensus 134 ~----~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 162 (164)
T d1z2aa1 134 K----RLKLRFYRTSVKEDLNVSEVFKYLAEKH 162 (164)
T ss_dssp H----HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred H----HcCCEEEEeccCCCcCHHHHHHHHHHHH
Confidence 1 1345799999999999999999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.5e-23 Score=120.86 Aligned_cols=106 Identities=21% Similarity=0.301 Sum_probs=86.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
|++|++++..++..++++++++++|+|.++..+++....|+..+.+. ...+.|+++++||+|+.+.. +.++ .+.+.
T Consensus 61 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~-~~~~~ 138 (170)
T d1r2qa_ 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQE-AQSYA 138 (170)
T ss_dssp EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHH-HHHHH
T ss_pred cCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHH-HHHHH
Confidence 78999999999999999999999999999999999998888887543 23679999999999986542 2322 22222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. ..++++++|||++|.|++++|++|++.+.
T Consensus 139 ~----~~~~~~~e~SAk~g~~V~e~f~~l~~~i~ 168 (170)
T d1r2qa_ 139 D----DNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp H----HTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred H----hcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 1 24568999999999999999999998775
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.6e-23 Score=120.41 Aligned_cols=105 Identities=21% Similarity=0.346 Sum_probs=85.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||+|+++++.++..+++++|++++|+|+++..+++....|+..+.+. .....|+++++||+|+.+... .++. ..+.
T Consensus 59 D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~-~~~~ 136 (166)
T d1z0fa1 59 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEA-KQFA 136 (166)
T ss_dssp ECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHH-HHHH
T ss_pred ccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHH-HHHH
Confidence 79999999999999999999999999999999999998888877543 336789999999999855332 2222 2222
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++++++|||++|.|++++|++|++.+
T Consensus 137 ----~~~~~~~~e~Saktg~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 137 ----EENGLLFLEASAKTGENVEDAFLEAAKKI 165 (166)
T ss_dssp ----HHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 12346799999999999999999999875
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1e-23 Score=124.00 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=86.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
||+|++++..++..++..+|++++|||++++.+++....|+..+.+.....+.|+++++||+|+... .+.++. +.+.
T Consensus 58 d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~-~~~a 136 (167)
T d1xtqa1 58 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEG-KALA 136 (167)
T ss_dssp ECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHH-HHHH
T ss_pred ccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHH-HHHH
Confidence 7899999999999999999999999999999999999999988866544467899999999998654 333332 2221
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. ..++++++|||++|.|++++|+.+++++.
T Consensus 137 ~----~~~~~~~e~Sak~~~~v~~~f~~li~~~~ 166 (167)
T d1xtqa1 137 E----SWNAAFLESSAKENQTAVDVFRRIILEAE 166 (167)
T ss_dssp H----HHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred H----HcCCEEEEEecCCCCCHHHHHHHHHHHhc
Confidence 1 12357899999999999999999998753
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.1e-23 Score=123.88 Aligned_cols=106 Identities=16% Similarity=0.238 Sum_probs=85.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC--CHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 78 (113)
|++|++.+..++..++.+++++++|||++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+. +.+.
T Consensus 57 d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~-~~~~ 135 (167)
T d1kaoa_ 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEG-RALA 135 (167)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHH-HHHH
T ss_pred cCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHH-HHHH
Confidence 78999999999999999999999999999999999999999888665445678999999999986532 22221 2111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. ..++++++|||++|.|++++|+++++++
T Consensus 136 ~----~~~~~~~e~Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 136 E----EWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp H----HHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred H----HcCCeEEEECCCCCcCHHHHHHHHHHHH
Confidence 1 1234689999999999999999998865
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=5.9e-23 Score=120.99 Aligned_cols=107 Identities=22% Similarity=0.317 Sum_probs=86.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-----CHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-----KPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-----~~~~~~~ 75 (113)
||+|++++..++..++.++|++++|||.+++.+++....|+...... .....|+++++||+|+.+.. ...+. +
T Consensus 58 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~-~ 135 (170)
T d1ek0a_ 58 DTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEG-E 135 (170)
T ss_dssp EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHH-H
T ss_pred ccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHH-H
Confidence 78999999999999999999999999999999999999888776543 23578999999999975432 22222 2
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcCC
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 113 (113)
.+. +..++++++|||++|.|++++|..|++.+++
T Consensus 136 ~~~----~~~~~~~~e~Sak~g~gV~e~F~~i~~~i~~ 169 (170)
T d1ek0a_ 136 KLA----EEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169 (170)
T ss_dssp HHH----HHHTCEEEECCTTTCTTHHHHHHHHHTTSCC
T ss_pred HHH----HHcCCEEEEecCCCCcCHHHHHHHHHHHhcc
Confidence 111 1235679999999999999999999998875
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.6e-23 Score=122.57 Aligned_cols=107 Identities=19% Similarity=0.248 Sum_probs=84.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc-CCCCCeEEEEEeCCCCCCC--CCHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDA--MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~ 77 (113)
|++|++++..++..++..++++++|||++++.++.....|+..+.+.. ...++|+++|+||+|+.+. .+.++. +.+
T Consensus 56 d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~-~~~ 134 (171)
T d2erxa1 56 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEA-EAL 134 (171)
T ss_dssp ECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHH-HHH
T ss_pred cccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHH-HHH
Confidence 789999999999999999999999999999999999988887775432 2367899999999998543 233222 222
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
. +..++++++|||++|.|++++|+.|++.++
T Consensus 135 ~----~~~~~~~~e~Sak~~~~v~e~f~~l~~~~~ 165 (171)
T d2erxa1 135 A----RTWKCAFMETSAKLNHNVKELFQELLNLEK 165 (171)
T ss_dssp H----HHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred H----HHcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 2 123457899999999999999999998654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.4e-22 Score=118.01 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=87.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|++.+...+..++..++++++|+|.+++.+++....|+..+.+.....++|+++++||+|+.......+..+.+..
T Consensus 57 d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~- 135 (166)
T d1ctqa_ 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLAR- 135 (166)
T ss_dssp EECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHH-
T ss_pred eccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHH-
Confidence 6789999999999999999999999999999999999999998876544567899999999998654332222222221
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
..++++++|||++|.|++++|.++++.++
T Consensus 136 ---~~~~~~~e~Sak~g~gi~e~f~~i~~~i~ 164 (166)
T d1ctqa_ 136 ---SYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp ---HHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---HhCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 12346899999999999999999998653
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.86 E-value=5.9e-21 Score=112.63 Aligned_cols=113 Identities=45% Similarity=0.831 Sum_probs=96.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|++..+..+..++..++++++++|.++..+++....+...........+.|+++++||+|++......++.+.+...
T Consensus 65 d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~ 144 (177)
T d1zj6a1 65 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLT 144 (177)
T ss_dssp ECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG
T ss_pred ccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHH
Confidence 57888889999999999999999999999988888887777777666666789999999999998877888888888777
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcCC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHKL 113 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 113 (113)
.....++++++|||++|+|++++++||.+++++
T Consensus 145 ~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~lk~ 177 (177)
T d1zj6a1 145 SIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 177 (177)
T ss_dssp GCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred hhHhcCCEEEEEeCCCCCCHHHHHHHHHHHhCC
Confidence 666778999999999999999999999998875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.1e-23 Score=121.94 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=78.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
|++|+++++.++..+++++|++++|||.+++.+++....|+..+.... ....|+++++||+|+.+. .+.++..+ +.
T Consensus 58 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~-~a 135 (167)
T d1z08a1 58 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAES-YA 135 (167)
T ss_dssp ECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHH-HH
T ss_pred ccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHHH-HH
Confidence 789999999999999999999999999999999999999988775432 256799999999998654 33333322 22
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++++++|||++|.|++++|++|++.+
T Consensus 136 ----~~~~~~~~e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 136 ----ESVGAKHYHTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp ----HHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ----HHcCCeEEEEecCCCcCHHHHHHHHHHHH
Confidence 12345789999999999999999999765
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=6.7e-23 Score=120.91 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=83.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
|++|++++...+..++..+|++++|+|.+++.+++....|+..+.+.......|+++++||+|+.+. ...++..+ +.
T Consensus 59 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~-~~ 137 (171)
T d2erya1 59 DTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ-LA 137 (171)
T ss_dssp ECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHH-HH
T ss_pred cccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHH-HH
Confidence 7899999999999999999999999999999999999999988766544567899999999998654 23333222 22
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++++++|||++|.|++++|.+|++.+
T Consensus 138 ----~~~~~~~~e~Sak~~~~i~e~f~~l~~~i 166 (171)
T d2erya1 138 ----RQLKVTYMEASAKIRMNVDQAFHELVRVI 166 (171)
T ss_dssp ----HHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEcCCCCcCHHHHHHHHHHHH
Confidence 12346799999999999999999998865
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.4e-21 Score=114.73 Aligned_cols=106 Identities=25% Similarity=0.359 Sum_probs=87.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC-CHHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~ 79 (113)
||||+++++.+++.++++++++++|||++++.+++....|+.++.+.......|+++++||.|..... ...+..+ +.
T Consensus 62 Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~-~~- 139 (177)
T d1x3sa1 62 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK-FA- 139 (177)
T ss_dssp EECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH-HH-
T ss_pred ECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHH-HH-
Confidence 79999999999999999999999999999999999999999998765555678999999999976532 3333222 22
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++++++|||++|.|++++|+++++.+
T Consensus 140 ---~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l 168 (177)
T d1x3sa1 140 ---RKHSMLFIEASAKTCDGVQCAFEELVEKI 168 (177)
T ss_dssp ---HHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---HHCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12446799999999999999999998764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.3e-22 Score=119.92 Aligned_cols=106 Identities=24% Similarity=0.373 Sum_probs=84.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~ 79 (113)
|++|++.+..+++.++..+|++++|+|++++.+++....|+..+.+. ...++|+++++||+|+..... ..+....+.
T Consensus 58 d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a- 135 (173)
T d2a5ja1 58 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFA- 135 (173)
T ss_dssp CCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-
T ss_pred cccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHH-
Confidence 79999999999999999999999999999999999999999888653 236789999999999865322 112222222
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++++++|||++|.|++++|.++++.+
T Consensus 136 ---~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i 164 (173)
T d2a5ja1 136 ---REHGLIFMETSAKTACNVEEAFINTAKEI 164 (173)
T ss_dssp ---HHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---HHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 12345799999999999999999998764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.5e-22 Score=119.58 Aligned_cols=106 Identities=20% Similarity=0.319 Sum_probs=85.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
||||++++..+++.++++++++++|+|.+++.++.....|+..+.... ..++|+++++||+|+...... .+....+..
T Consensus 60 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~ 138 (174)
T d2bmea1 60 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQ 138 (174)
T ss_dssp EECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHHHH
Confidence 799999999999999999999999999999999999988888876532 367999999999998553321 122222221
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..++++++|||++|.|++++|+++++.+
T Consensus 139 ----~~~~~~~e~Sak~~~gi~e~f~~l~~~i 166 (174)
T d2bmea1 139 ----ENELMFLETSALTGENVEEAFVQCARKI 166 (174)
T ss_dssp ----HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----hCCCEEEEeeCCCCcCHHHHHHHHHHHH
Confidence 2356799999999999999999998764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=2.4e-21 Score=114.37 Aligned_cols=108 Identities=14% Similarity=0.207 Sum_probs=74.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC---cCCCCCeEEEEEeCCCCCCCC--CHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND---REMRDAIILIFANKQDLPDAM--KPHEIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D~~~~~--~~~~~~~ 75 (113)
||+|++++..++..+++.++++++|+|++++.+++....|+.++... ....++|+++++||+|+.+.. ...+..+
T Consensus 58 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~ 137 (175)
T d1ky3a_ 58 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ 137 (175)
T ss_dssp CCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH
T ss_pred ccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHH
Confidence 79999999999999999999999999999999999999998877542 223578999999999986532 1122222
Q ss_pred HhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+... ...+++++|||++|.|++++|++|++.+
T Consensus 138 ~~~~~---~~~~~~~e~SA~~g~gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 138 ELAKS---LGDIPLFLTSAKNAINVDTAFEEIARSA 170 (175)
T ss_dssp HHHHH---TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHH---cCCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence 22211 1235689999999999999999998754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.8e-22 Score=118.63 Aligned_cols=106 Identities=20% Similarity=0.327 Sum_probs=85.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~ 79 (113)
|++|+++|..++..+++.++++++|||.+++.++.....|+..+.+.. ..+.|+++|+||+|+.+... ..+.......
T Consensus 59 d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~ 137 (175)
T d2f9la1 59 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 137 (175)
T ss_dssp ECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHhhc
Confidence 789999999999999999999999999999999999999998886543 25789999999999875422 2222222211
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
....++++|||++|.|++++|+++++.+
T Consensus 138 ----~~~~~~~e~Sa~~g~~i~e~f~~l~~~i 165 (175)
T d2f9la1 138 ----KNNLSFIETSALDSTNVEEAFKNILTEI 165 (175)
T ss_dssp ----HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----ccCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 2345799999999999999999988764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=6e-22 Score=118.98 Aligned_cols=105 Identities=21% Similarity=0.318 Sum_probs=84.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||++++..+|..++++|+++|+|||++++.++.....|+..+.+. ...+.|+++++||+|+.+... .++......
T Consensus 61 Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~ 139 (194)
T d2bcgy1 61 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 139 (194)
T ss_dssp CCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred ECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhhh
Confidence 89999999999999999999999999999999999988887777542 347789999999999876432 222222111
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..++++++|||++|.|++++|+++++.+
T Consensus 140 -----~~~~~~~e~SAk~g~gi~e~f~~l~~~i 167 (194)
T d2bcgy1 140 -----ANKMPFLETSALDSTNVEDAFLTMARQI 167 (194)
T ss_dssp -----HTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----ccCcceEEEecCcCccHHHHHHHHHHHH
Confidence 2345689999999999999999998764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.8e-21 Score=114.99 Aligned_cols=110 Identities=16% Similarity=0.123 Sum_probs=80.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH-HHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH-EIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~ 79 (113)
|++|++.+..++..++.++|++++|||.+++.+++....|+....+. ...++|+++|+||+|+.+..... +.......
T Consensus 59 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~ 137 (183)
T d1mh1a_ 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 137 (183)
T ss_dssp CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred cccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhcccc
Confidence 78999999999999999999999999999999999887644444332 23678999999999975431111 11111000
Q ss_pred C--------cc-CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 T--------RI-RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~--------~~-~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
. .. ....+++++|||++|.|++++|+.+++.+
T Consensus 138 ~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~i 178 (183)
T d1mh1a_ 138 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178 (183)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHH
Confidence 0 00 01336899999999999999999999764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4e-22 Score=117.42 Aligned_cols=106 Identities=19% Similarity=0.309 Sum_probs=77.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~ 78 (113)
||||+++++.++..+++++|++++|||.+++.++.....|+....... ....|+++++||+|+.+... .++... +.
T Consensus 62 Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~-~~ 139 (170)
T d2g6ba1 62 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEK-LA 139 (170)
T ss_dssp ECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHH-HH
T ss_pred ECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHH-HH
Confidence 899999999999999999999999999999999999988887765432 35689999999999876432 222222 11
Q ss_pred CCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 79 LTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
...++++++|||++|.|++++|++|++.++
T Consensus 140 ----~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~ 169 (170)
T d2g6ba1 140 ----KEYGLPFMETSAKTGLNVDLAFTAIAKELK 169 (170)
T ss_dssp ----HHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----HHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence 112357999999999999999999998764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=3e-22 Score=118.31 Aligned_cols=106 Identities=25% Similarity=0.354 Sum_probs=71.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-HHHHHHhCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGL 79 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~ 79 (113)
||||++++..++..+++.++++|+|||.+++.++.....|+..+... ...+.|+++++||.|+...... .+......
T Consensus 61 D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~- 138 (173)
T d2fu5c1 61 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA- 138 (173)
T ss_dssp EC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH-
T ss_pred ECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHHH-
Confidence 89999999999999999999999999999999999998888887543 3467999999999998764322 11112111
Q ss_pred CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 80 TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...++++++|||++|.|++++|++|++.+
T Consensus 139 ---~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i 167 (173)
T d2fu5c1 139 ---LDYGIKFMETSAKANINVENAFFTLARDI 167 (173)
T ss_dssp ---HHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred ---HhcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12345799999999999999999999865
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=5e-21 Score=114.63 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=80.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCC------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------------ 68 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------ 68 (113)
||+|+++|+.++..++..+|++++|||++++.+++....|+...... ...+.|+++++||+|+.+..
T Consensus 57 D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~ 135 (191)
T d2ngra_ 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQK 135 (191)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTCCEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred ccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhh-cCCCCceEEEeccccccccchhhhhhhhcccc
Confidence 78999999999999999999999999999999999997655544332 23679999999999985431
Q ss_pred --CHHHHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 69 --KPHEIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 69 --~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
...+. +.+.. .-.++++++|||+++.|++++|+.+++.+
T Consensus 136 ~v~~~~~-~~~~~---~~~~~~~~e~SAk~~~~V~e~f~~l~~~~ 176 (191)
T d2ngra_ 136 PITPETA-EKLAR---DLKAVKYVECSALTQKGLKNVFDEAILAA 176 (191)
T ss_dssp CCCHHHH-HHHHH---HTTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccHHHH-HHHHH---HcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence 11111 11110 01345789999999999999999988643
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=8.8e-22 Score=115.83 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=79.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHhC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLG 78 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 78 (113)
|++|++.+. .+..++.+++++++|||.+++.++.....|...........+.|+++|+||+|+.+. .+.++..+ +.
T Consensus 56 D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~-~a 133 (168)
T d2atva1 56 DTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK-LA 133 (168)
T ss_dssp ECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH-HH
T ss_pred ecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHH-HH
Confidence 789998885 556789999999999999999999998877665544333467999999999998653 33333222 11
Q ss_pred CCccCCCCeEEEeccccCCCC-HHHHHHHHHhhc
Q psy17510 79 LTRIRDRNWYVQPSCATTADG-LYEGLTWLTSNH 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~sa~~~~~-i~~~~~~l~~~~ 111 (113)
. ..++++++|||++|.| ++++|..|++.+
T Consensus 134 ~----~~~~~~~e~Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 134 T----ELACAFYECSACTGEGNITEIFYELCREV 163 (168)
T ss_dssp H----HHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred H----HhCCeEEEEccccCCcCHHHHHHHHHHHH
Confidence 1 1245789999999985 999999998765
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=8.6e-20 Score=107.65 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=84.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC---cCCCCCeEEEEEeCCCCCCC-CCHHHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND---REMRDAIILIFANKQDLPDA-MKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~ 76 (113)
|++|+.+++..+..++..++++++++|.+++.+++....|++++.+. ....+.|+++|+||+|+.+. ...++..+.
T Consensus 61 d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~ 140 (174)
T d1wmsa_ 61 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAW 140 (174)
T ss_dssp ECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHH
T ss_pred cccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHH
Confidence 68999999999999999999999999999999999998888776432 33357899999999998653 334433322
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. . ...+++++|||+++.|++++|++|++.+
T Consensus 141 ~~-~---~~~~~~~e~Sak~~~gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 141 CR-D---NGDYPYFETSAKDATNVAAAFEEAVRRV 171 (174)
T ss_dssp HH-H---TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH-H---cCCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 21 1 1235689999999999999999998765
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=2e-20 Score=109.66 Aligned_cols=106 Identities=24% Similarity=0.334 Sum_probs=85.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
||||+++++.++..++++++++++|||.+++.+++....|+....... ....|+++++||.|+.+.....+..+.+..
T Consensus 57 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~- 134 (166)
T d1g16a_ 57 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK- 134 (166)
T ss_dssp CCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-
T ss_pred ECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhhhhhhhHHHHHHHHH-
Confidence 899999999999999999999999999999999988877776665432 356799999999998765444333333332
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..++++++|||+++.|++++|++|++.+
T Consensus 135 ---~~~~~~~~~Sa~~~~~v~e~f~~l~~~i 162 (166)
T d1g16a_ 135 ---ELGIPFIESSAKNDDNVNEIFFTLAKLI 162 (166)
T ss_dssp ---HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---hcCCeEEEECCCCCCCHHHHHHHHHHHH
Confidence 1345799999999999999999998765
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=2.7e-21 Score=113.20 Aligned_cols=103 Identities=19% Similarity=0.274 Sum_probs=78.0
Q ss_pred CCCCccCch-hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC--CCHHHHHHHh
Q psy17510 1 DVGGQDKIR-PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~-~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~ 77 (113)
|++|...+. ..++.|+.++|++|+|||++++.+++....|+..+.+.....+.|+++++||+|+.+. .+.++. +.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~-~~~ 135 (165)
T d1z06a1 57 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA-QKF 135 (165)
T ss_dssp ECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHH-HHH
T ss_pred eccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHH-HHH
Confidence 455665554 4578899999999999999999999999999998876544568999999999998654 233332 222
Q ss_pred CCCccCCCCeEEEeccccCC---CCHHHHHHHHH
Q psy17510 78 GLTRIRDRNWYVQPSCATTA---DGLYEGLTWLT 108 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~---~~i~~~~~~l~ 108 (113)
.. ..++++++|||+++ .|++++|++|+
T Consensus 136 ~~----~~~~~~~e~SAkt~~~~~~V~e~F~~lA 165 (165)
T d1z06a1 136 AD----THSMPLFETSAKNPNDNDHVEAIFMTLA 165 (165)
T ss_dssp HH----HTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred HH----HCCCEEEEEecccCCcCcCHHHHHHHhC
Confidence 21 23456899999974 58999999874
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.82 E-value=1.3e-20 Score=112.10 Aligned_cols=108 Identities=15% Similarity=0.211 Sum_probs=84.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCc---CCCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDAMKPHEIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 77 (113)
||+|+..+..++..++..++++++++|.++..+++....|+..+.+.. ...++|+++|+||+|+.+.....+....+
T Consensus 57 d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~ 136 (184)
T d1vg8a_ 57 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 136 (184)
T ss_dssp EECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHH
T ss_pred ecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHH
Confidence 689999999999999999999999999999999999989988775432 23468999999999987643322222222
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ...++++++|||++|.|++++|++|++.+
T Consensus 137 ~~---~~~~~~~~e~Sak~~~gI~e~f~~l~~~i 167 (184)
T d1vg8a_ 137 CY---SKNNIPYFETSAKEAINVEQAFQTIARNA 167 (184)
T ss_dssp HH---HTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HH---HhcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 11 12356799999999999999999998754
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.80 E-value=6.3e-20 Score=108.84 Aligned_cols=106 Identities=11% Similarity=0.103 Sum_probs=79.8
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-------------
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA------------- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------- 67 (113)
|++|++.+..++..++.++|++++|||.+++.+++....|+...... ...+.|+++|+||+|+...
T Consensus 56 D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~ 134 (179)
T d1m7ba_ 56 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 134 (179)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred cccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhc-cCCcceEEEEEecccccccchhhHHHhhhhcC
Confidence 78999999999999999999999999999999999987766554332 1357899999999997542
Q ss_pred -CCHHHHHHHhCCCccCCCCeEEEeccccCCC-CHHHHHHHHHhhc
Q psy17510 68 -MKPHEIQEKLGLTRIRDRNWYVQPSCATTAD-GLYEGLTWLTSNH 111 (113)
Q Consensus 68 -~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~~l~~~~ 111 (113)
.+.++..+... ....+++++|||+++. |++++|+.+++.+
T Consensus 135 ~V~~~e~~~~a~----~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 135 PVSYDQGANMAK----QIGAATYIECSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp CCCHHHHHHHHH----HHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHH----HhCCCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 11111111100 0123578999999998 5999999998764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=4.8e-19 Score=104.72 Aligned_cols=102 Identities=9% Similarity=0.110 Sum_probs=75.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcC--cCCCCCeEEEEEeCCCCCCCC----CHHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND--REMRDAIILIFANKQDLPDAM----KPHEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~~~----~~~~~~ 74 (113)
||+|+.++. |+.++|++|+|||++++.+++....|...+... ....+.|+++|+||.|+.... +..+.
T Consensus 58 Dt~g~~~~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~- 131 (175)
T d2bmja1 58 EEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA- 131 (175)
T ss_dssp ECSSCCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHH-
T ss_pred ecccccccc-----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHH-
Confidence 789988753 778899999999999999999998888776432 223567999999999875422 22222
Q ss_pred HHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.+.. ...++++++|||+++.|++++|..+++.+
T Consensus 132 ~~~~~---~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 165 (175)
T d2bmja1 132 RALCA---DMKRCSYYETCATYGLNVDRVFQEVAQKV 165 (175)
T ss_dssp HHHHH---TSTTEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHH---HhCCCeEEEeCCCCCcCHHHHHHHHHHHH
Confidence 22211 12456899999999999999999998754
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=1.2e-17 Score=96.67 Aligned_cols=110 Identities=35% Similarity=0.657 Sum_probs=93.6
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|...+..+++.++..++++++++|.++..++.....|+....+.....+.|+++++||.|++...+..++.+.....
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~ 129 (166)
T d2qtvb1 50 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLL 129 (166)
T ss_dssp ECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCS
T ss_pred eeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhh
Confidence 57888888999999999999999999999988888888888877776666789999999999998888888887777543
Q ss_pred cc-------CCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 81 RI-------RDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 81 ~~-------~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.. ....+++++|||++|+|++++|+||.++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~~ 166 (166)
T d2qtvb1 130 NTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 166 (166)
T ss_dssp SCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTTC
T ss_pred hhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhCC
Confidence 32 2356789999999999999999999863
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.75 E-value=2.1e-17 Score=96.04 Aligned_cols=112 Identities=44% Similarity=0.850 Sum_probs=94.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|++|.+.+...+..++...+++++++|..+..++.....++............|+++++||.|+.+.....++.......
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~ 134 (169)
T d1upta_ 55 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLP 134 (169)
T ss_dssp EECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG
T ss_pred eccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHH
Confidence 45778888888999999999999999999887788777766666555555778999999999998877788888877766
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
......+++++|||++|.|++++|++|++.++
T Consensus 135 ~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 135 ALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 166 (169)
T ss_dssp GCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 66667889999999999999999999988764
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.73 E-value=8.6e-17 Score=94.75 Aligned_cols=111 Identities=32% Similarity=0.640 Sum_probs=87.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 80 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 80 (113)
|+.|+..+...+..+...++++++++|.++.........++..........++|+++++||.|++...+..++.+.....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~ 142 (186)
T d1f6ba_ 63 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLY 142 (186)
T ss_dssp EECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCT
T ss_pred cccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhc
Confidence 35677777888889999999999999999988888877766666665556789999999999998888877777665432
Q ss_pred cc------------CCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RI------------RDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~------------~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.. ....+++++|||++|+|++++|+||++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 143 GQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp TTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence 11 22457899999999999999999999876
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=3.4e-16 Score=92.96 Aligned_cols=111 Identities=31% Similarity=0.469 Sum_probs=79.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhh----------HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR----------IDEARQELHRIINDREMRDAIILIFANKQDLPD---- 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---- 66 (113)
||+|+++++.+|..|+..++++++|+|.++..+ +.....++..+.......+.|+++++||+|+..
T Consensus 48 D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~ 127 (195)
T d1svsa1 48 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 127 (195)
T ss_dssp EECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTT
T ss_pred ccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhcc
Confidence 799999999999999999999999999987554 334445555555555567899999999998411
Q ss_pred -------------CCCHHH----HHHHhC-C-CccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 67 -------------AMKPHE----IQEKLG-L-TRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 67 -------------~~~~~~----~~~~~~-~-~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.....+ +...+. . .......+++++|||+++.|++++|+.+...+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i 191 (195)
T d1svsa1 128 KSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 191 (195)
T ss_dssp TSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence 011111 111221 1 11233577899999999999999999887643
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=1.1e-15 Score=90.12 Aligned_cols=103 Identities=16% Similarity=0.038 Sum_probs=68.3
Q ss_pred CCCCccCchhh--------HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPL--------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~--------~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
||||....... ...++..||++++|+|++++....+ ..|.+.+... ..++|+++|+||+|+.+. .++
T Consensus 59 DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~--~~~~piilv~NK~Dl~~~--~~~ 133 (178)
T d1wf3a1 59 DTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPL--VGKVPILLVGNKLDAAKY--PEE 133 (178)
T ss_dssp ECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG--TTTSCEEEEEECGGGCSS--HHH
T ss_pred ccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheecc--ccchhhhhhhcccccccC--HHH
Confidence 78997554332 2345789999999999987643322 3334444222 356899999999998553 222
Q ss_pred HHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 73 IQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..+..... .....++++||+++.|++++++++.+.+
T Consensus 134 ~~~~~~~~---~~~~~~~~iSA~~~~gi~~L~~~i~~~l 169 (178)
T d1wf3a1 134 AMKAYHEL---LPEAEPRMLSALDERQVAELKADLLALM 169 (178)
T ss_dssp HHHHHHHT---STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhh---cccCceEEEecCCCCCHHHHHHHHHHhC
Confidence 22222211 1223578899999999999999999876
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=6.5e-16 Score=92.05 Aligned_cols=111 Identities=24% Similarity=0.447 Sum_probs=79.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChh----------hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
|++|+++++..|..++.+++++++++|.++.. .+.+...++..+.+.....+.|+++++||+|+...
T Consensus 51 d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~ 130 (200)
T d2bcjq2 51 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIM 130 (200)
T ss_dssp ECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTT
T ss_pred cccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhccc
Confidence 79999999999999999999999999998643 24444555555555555678999999999996321
Q ss_pred ---------------CCHHH----HHHHh-CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 68 ---------------MKPHE----IQEKL-GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 68 ---------------~~~~~----~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
.+... +...+ .........+.+++|||+++.|+.++|+.+.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I 194 (200)
T d2bcjq2 131 YSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 194 (200)
T ss_dssp TSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence 01111 11111 2222334567889999999999999999886543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.58 E-value=2.4e-15 Score=90.61 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=74.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH----HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE----IQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~ 76 (113)
|||||..|.......+..+|++|+|+|+.+.-....+.+.+..+... ...|++++.||+|+.+...... +.+.
T Consensus 92 D~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~ 168 (205)
T d2qn6a3 92 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQF 168 (205)
T ss_dssp ECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHHHHHHHH
Confidence 89999999888888889999999999998742223333333333221 2358899999999866322111 1111
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
.. ......++++++||++|.|++++++.+..+++
T Consensus 169 l~--~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip 202 (205)
T d2qn6a3 169 TK--GTWAENVPIIPVSALHKINIDSLIEGIEEYIK 202 (205)
T ss_dssp HT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hc--cccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence 11 12235678999999999999999999887764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.58 E-value=1.9e-15 Score=89.28 Aligned_cols=106 Identities=14% Similarity=0.089 Sum_probs=73.5
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH---HHHHHh
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH---EIQEKL 77 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~---~~~~~~ 77 (113)
|++|+..|...+...+..+|++++|+|++...... ....+..+.. .++|+++++||+|+.+..... +..+..
T Consensus 65 d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~-~~~~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~ 139 (179)
T d1wb1a4 65 DAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQ-TGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSI 139 (179)
T ss_dssp CCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhhhccccccccccccccchh-hhhhhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHH
Confidence 78999999888888999999999999998753322 2233333332 478999999999987632211 111111
Q ss_pred CCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 78 GLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
..........+++++||++|.|++++++.+.+.+
T Consensus 140 ~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l 173 (179)
T d1wb1a4 140 LQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 173 (179)
T ss_dssp HHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcC
Confidence 1111112345789999999999999999998754
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.56 E-value=4e-15 Score=88.92 Aligned_cols=107 Identities=18% Similarity=0.121 Sum_probs=74.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH----HHHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEK 76 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~ 76 (113)
||||++.|.......+..+|++++|+|+.+........+.+..+... ...+++++.||+|+.+..... .+.+.
T Consensus 84 DtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~~ 160 (195)
T d1kk1a3 84 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKEF 160 (195)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHHH
Confidence 89999999998888899999999999998753223333333333221 234688899999987632111 12222
Q ss_pred hCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhcC
Q psy17510 77 LGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 112 (113)
+. ......++++++||++|.|++++++.+.+.++
T Consensus 161 ~~--~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 161 IE--GTVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hc--cccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 22 12234678999999999999999999987764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.53 E-value=1.3e-14 Score=88.62 Aligned_cols=105 Identities=20% Similarity=0.164 Sum_probs=71.4
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH---HHH----
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEI---- 73 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~---- 73 (113)
||||++.|...+...+..+|++|+|+|+.+.-... ....+..+.. .++|+++++||+|+.+.... ..+
T Consensus 76 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~ 150 (227)
T d1g7sa4 76 DTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQ-TQEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETF 150 (227)
T ss_dssp CCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHH
T ss_pred cccceecccccchhcccccceEEEEEecccCcccc-hhHHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhh
Confidence 89999999888888899999999999998643322 2344455543 57899999999998653210 000
Q ss_pred ------------------HHHhCCCcc----------CCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 74 ------------------QEKLGLTRI----------RDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 74 ------------------~~~~~~~~~----------~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
...+..... ....++++.+||++|.|++++++.+...
T Consensus 151 ~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l 215 (227)
T d1g7sa4 151 SKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (227)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 000000000 0123589999999999999999887653
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=2.4e-14 Score=84.28 Aligned_cols=104 Identities=22% Similarity=0.220 Sum_probs=69.1
Q ss_pred CCCCccC-------chhhHHhhhcCCcEEEEEEECCChh--hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH
Q psy17510 1 DVGGQDK-------IRPLWRHYYTGTQGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 71 (113)
Q Consensus 1 D~~G~~~-------~~~~~~~~~~~~~~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 71 (113)
||||..+ +......++..++++++++|..... .+.....|+..... ...++|+++++||+|+.+....+
T Consensus 55 DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~NK~D~~~~~~~~ 132 (180)
T d1udxa2 55 DIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEEEAVK 132 (180)
T ss_dssp ECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCHHHHH
T ss_pred CCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhcccc--ccchhhhhhhhhhhhhhhHHHHH
Confidence 7888432 2223345678899999999987532 33333344443311 12468999999999987643344
Q ss_pred HHHHHhCCCccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 72 EIQEKLGLTRIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++.+.+. ..+.+++.+||++|.|++++++.+.+.+
T Consensus 133 ~~~~~~~-----~~~~~~~~iSA~tg~gid~L~~~i~~~l 167 (180)
T d1udxa2 133 ALADALA-----REGLAVLPVSALTGAGLPALKEALHALV 167 (180)
T ss_dssp HHHHHHH-----TTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHH-----hcCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4444333 2456799999999999999999987654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1.4e-14 Score=83.79 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=63.8
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEec
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 92 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (113)
..++..+|++++++|..++.+......|...+... ..++|+++|+||+|+.+... ........+++++
T Consensus 75 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~iilv~NK~Dl~~~~~----------~~~~~~~~~~~~i 142 (161)
T d2gj8a1 75 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL--PAKLPITVVRNKADITGETL----------GMSEVNGHALIRL 142 (161)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHS--CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEEC
T ss_pred HHHHHhccccceeeccccccchhhhhhhhhhhhhc--ccccceeeccchhhhhhhHH----------HHHHhCCCcEEEE
Confidence 45688999999999999876665555544444332 25789999999999754211 1111245689999
Q ss_pred cccCCCCHHHHHHHHHhhc
Q psy17510 93 CATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 93 sa~~~~~i~~~~~~l~~~~ 111 (113)
||+++.|+++++++|.+.+
T Consensus 143 SAk~~~gi~~L~~~l~~~l 161 (161)
T d2gj8a1 143 SARTGEGVDVLRNHLKQSM 161 (161)
T ss_dssp CTTTCTTHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 9999999999999998764
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.49 E-value=1.3e-14 Score=88.22 Aligned_cols=108 Identities=27% Similarity=0.430 Sum_probs=79.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR----------DRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
|++|+++++..|.+|+.+++++++++|.++. .++.+...++..+...+...++|+++++||+|+.+.
T Consensus 53 D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~ 132 (221)
T d1azta2 53 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVL 132 (221)
T ss_dssp ECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHH
T ss_pred ecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhc
Confidence 7999999999999999999999999999852 346666777888878777788999999999997321
Q ss_pred ---CCH--------------------------HH----HHHHh----CCCccCCCCeEEEeccccCCCCHHHHHHHHH
Q psy17510 68 ---MKP--------------------------HE----IQEKL----GLTRIRDRNWYVQPSCATTADGLYEGLTWLT 108 (113)
Q Consensus 68 ---~~~--------------------------~~----~~~~~----~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 108 (113)
... .+ +.+.+ .........+..+++||.++.++..+|+.+.
T Consensus 133 ~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~ 210 (221)
T d1azta2 133 AGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCR 210 (221)
T ss_dssp HCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTH
T ss_pred cCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHH
Confidence 000 00 11111 1111223457788999999999999997654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=4.4e-14 Score=84.12 Aligned_cols=110 Identities=22% Similarity=0.376 Sum_probs=72.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADR----------DRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--- 67 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 67 (113)
|++|++.++..|..++..++++++++|.++. .++.....++..+...+...++|+++++||+|+.+.
T Consensus 50 D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~ 129 (200)
T d1zcba2 50 DVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQ 129 (200)
T ss_dssp EECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTT
T ss_pred cccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhcc
Confidence 7899999999999999999999999999863 345666777888877766788999999999996321
Q ss_pred ---------------CCHHH----HHHHhCC--CccCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 68 ---------------MKPHE----IQEKLGL--TRIRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 68 ---------------~~~~~----~~~~~~~--~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
..... +.+.+.. .......+..++|||+++.+++.+|+.+.+.
T Consensus 130 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~ 193 (200)
T d1zcba2 130 VVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 193 (200)
T ss_dssp TCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHH
Confidence 11111 1222211 1112245677889999999999999877553
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=7e-14 Score=81.63 Aligned_cols=91 Identities=13% Similarity=0.000 Sum_probs=60.0
Q ss_pred hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEE
Q psy17510 11 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 90 (113)
Q Consensus 11 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (113)
....++..+|+++++.|.+....... ..++..+.. .++|+++|+||+|+.+....+...+... ....+++
T Consensus 73 ~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~----~~~pviiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~i 142 (171)
T d1mkya1 73 VTLNMIREADLVLFVVDGKRGITKED-ESLADFLRK----STVDTILVANKAENLREFEREVKPELYS-----LGFGEPI 142 (171)
T ss_dssp HHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHH----HTCCEEEEEESCCSHHHHHHHTHHHHGG-----GSSCSCE
T ss_pred ccccccccCcEEEEeecccccccccc-ccccccccc----ccccccccchhhhhhhhhhhHHHHHHHh-----cCCCCeE
Confidence 34456789999999999876544332 334444432 4689999999999854221111111111 1223467
Q ss_pred eccccCCCCHHHHHHHHHhhc
Q psy17510 91 PSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 91 ~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++||++|.|+++++++|.+++
T Consensus 143 ~iSAk~g~gid~L~~~i~~~l 163 (171)
T d1mkya1 143 PVSAEHNINLDTMLETIIKKL 163 (171)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHhC
Confidence 899999999999999998765
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=7e-13 Score=76.35 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=64.5
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecc
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
..+..+|++++|+|++++...... .+...+ ...|+++++||+|+.+..+.+++.+.++. ..+++++|
T Consensus 76 ~~~~~ad~ii~v~d~~~~~~~~~~-~~~~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~------~~~~~~vS 142 (160)
T d1xzpa2 76 QEIEKADIVLFVLDASSPLDEEDR-KILERI------KNKRYLVVINKVDVVEKINEEEIKNKLGT------DRHMVKIS 142 (160)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHH-HHHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTC------STTEEEEE
T ss_pred HHHHhCCEEEEEEeCCCCcchhhh-hhhhhc------ccccceeeeeeccccchhhhHHHHHHhCC------CCcEEEEE
Confidence 356789999999999986554332 222222 45789999999999888888777776653 23588999
Q ss_pred ccCCCCHHHHHHHHHhh
Q psy17510 94 ATTADGLYEGLTWLTSN 110 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~~ 110 (113)
|++|.|+++++++|.++
T Consensus 143 A~~g~gi~~L~~~I~ke 159 (160)
T d1xzpa2 143 ALKGEGLEKLEESIYRE 159 (160)
T ss_dssp GGGTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhc
Confidence 99999999999999875
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.44 E-value=2.9e-13 Score=80.51 Aligned_cols=94 Identities=13% Similarity=-0.003 Sum_probs=64.4
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEecc
Q psy17510 14 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 14 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
..+..++++++++|.+.+.. ....++++.+.. .++|+++|+||+|+.+.....+..+............+++.+|
T Consensus 101 ~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S 175 (195)
T d1svia_ 101 TTREELKAVVQIVDLRHAPS-NDDVQMYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred ccccchhhhhhhhhcccccc-cccccccccccc----ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEe
Confidence 45567899999999986533 222445555543 4689999999999865444433333322212223556789999
Q ss_pred ccCCCCHHHHHHHHHhhcC
Q psy17510 94 ATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~~~~ 112 (113)
|+++.|+++++++|.+.+.
T Consensus 176 A~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 176 SETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999988764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=6.6e-13 Score=79.59 Aligned_cols=110 Identities=24% Similarity=0.360 Sum_probs=71.3
Q ss_pred CCCCccCch-hhHHhhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHcC-c-CCCCCeEEEEEeCCCCCCCCCHHHHHHH
Q psy17510 1 DVGGQDKIR-PLWRHYYTGTQGLIFVVDCADRDR-IDEARQELHRIIND-R-EMRDAIILIFANKQDLPDAMKPHEIQEK 76 (113)
Q Consensus 1 D~~G~~~~~-~~~~~~~~~~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~-~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~ 76 (113)
|++|+++++ ..+..++..++++++|+|.++..+ ..+...++..+... . ...++|+++++||+|++++.+.+++.+.
T Consensus 53 d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~ 132 (207)
T d2fh5b1 53 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQ 132 (207)
T ss_dssp ECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred eccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHH
Confidence 689999886 577889999999999999998654 44444444444321 1 1246899999999999877665544332
Q ss_pred hCC-----------------------Ccc-----------CCCCeEEEeccccCCCC------HHHHHHHHHhh
Q psy17510 77 LGL-----------------------TRI-----------RDRNWYVQPSCATTADG------LYEGLTWLTSN 110 (113)
Q Consensus 77 ~~~-----------------------~~~-----------~~~~~~~~~~sa~~~~~------i~~~~~~l~~~ 110 (113)
+.. ... ....+.++++|++++.| ++.+.+||.+.
T Consensus 133 l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 133 LEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp HHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HHHHhhhhhhccccccceeehhhhhhhhhcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence 100 000 01235689999999887 77888888653
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.39 E-value=3e-13 Score=79.54 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=58.8
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHH----------HHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhCCC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEA----------RQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLT 80 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~ 80 (113)
....+.+|++++|+|.+.+...... ..+++.+.. .++|+++|+||+|+.+... ...+.+.+..
T Consensus 76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~- 150 (184)
T d2cxxa1 76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV- 150 (184)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-
T ss_pred hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----cCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-
Confidence 4456789999999998753221111 122333322 4789999999999754321 1122233322
Q ss_pred ccCCCCeEEEeccccCCCCHHHHHHHHHhhc
Q psy17510 81 RIRDRNWYVQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 81 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
........++++||++|.|++++++++.+.+
T Consensus 151 ~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l 181 (184)
T d2cxxa1 151 PLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181 (184)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccccCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 1112233578999999999999999998765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.37 E-value=2.8e-13 Score=80.97 Aligned_cols=108 Identities=18% Similarity=0.105 Sum_probs=74.1
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH-H----HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-H----EIQE 75 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~----~~~~ 75 (113)
||||+..|...+......+|++++|+|+.+... ....+.+..+... ...|+++++||+|+.+.... + ++..
T Consensus 72 DtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~ 147 (196)
T d1d2ea3 72 DCPGHADYVKNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRE 147 (196)
T ss_dssp ECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHH
Confidence 899999999888888999999999999986432 3344444444332 34689999999998643211 1 2222
Q ss_pred HhCCCccCCCCeEEEeccccCC----------CCHHHHHHHHHhhcC
Q psy17510 76 KLGLTRIRDRNWYVQPSCATTA----------DGLYEGLTWLTSNHK 112 (113)
Q Consensus 76 ~~~~~~~~~~~~~~~~~sa~~~----------~~i~~~~~~l~~~~~ 112 (113)
.+....+.....+++.+||++| .++..+++.+..++.
T Consensus 148 ~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 148 LLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 2221122334578999999988 578888988877653
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.36 E-value=1.2e-12 Score=77.03 Aligned_cols=96 Identities=9% Similarity=-0.061 Sum_probs=63.1
Q ss_pred hHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC--HHHHHHHhCCCccCCCCeE
Q psy17510 11 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWY 88 (113)
Q Consensus 11 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~ 88 (113)
....++..+|++++|+|++.+.. .....++..+.. .+.|+++++||+|+..... ..++.+.+..........+
T Consensus 84 ~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
T d1mkya2 84 RVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP 158 (186)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHH----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCe
Confidence 34456788999999999976432 222334444433 4689999999999754322 3334333322111123457
Q ss_pred EEeccccCCCCHHHHHHHHHhhc
Q psy17510 89 VQPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 89 ~~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
++++||++|.|+++++++|.+.+
T Consensus 159 i~~vSa~~g~gv~~L~~~i~~~~ 181 (186)
T d1mkya2 159 LIFTSADKGWNIDRMIDAMNLAY 181 (186)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999987643
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.28 E-value=4.3e-11 Score=72.58 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=64.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCCCCCCH--H----HH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA-IILIFANKQDLPDAMKP--H----EI 73 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~~~--~----~~ 73 (113)
|||||+.|-..+......+|++++|+|+..... ..+.+.+..+.. .++ .++++.||+|+.+.... . ++
T Consensus 95 D~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~-~Qt~e~~~~~~~----~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l 169 (222)
T d1zunb3 95 DTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASL----LGIKHIVVAINKMDLNGFDERVFESIKADY 169 (222)
T ss_dssp ECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCEEEEEEECTTTTTSCHHHHHHHHHHH
T ss_pred eccchhhhhhhhccccccCceEEEEeccccCcc-cchHHHHHHHHH----cCCCEEEEEEEccccccccceehhhhHHHH
Confidence 899999999888888999999999999986422 223333333332 354 58999999998763221 1 12
Q ss_pred HHHhCCCccCCCCeEEEeccccCCCCHH
Q psy17510 74 QEKLGLTRIRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 101 (113)
...+....+....++++++||++|.|+.
T Consensus 170 ~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 170 LKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred hhhhHhhccCCCceEEEEEEcccCccCC
Confidence 2222222333456789999999999873
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=5.9e-11 Score=73.99 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=49.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
||||+..|.......+.-+|+.|+|+|+.+.- -..+...++.+.+ .++|.++++||+|...
T Consensus 77 DtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv-~~~T~~~w~~a~~----~~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 77 DAPGHVDFTIEVERSMRVLDGAIVVFDSSQGV-EPQSETVWRQAEK----YKVPRIAFANKMDKTG 137 (276)
T ss_dssp CCCSSSSCSTTHHHHHHHCCEEEEEEETTTSS-CHHHHHHHHHHHT----TTCCEEEEEECTTSTT
T ss_pred cCCchhhhHHHHHHHHHhhhheEEeccccCCc-chhHHHHHHHHHH----cCCCEEEEEecccccc
Confidence 89999999999999999999999999998642 2334555666654 5899999999999755
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.24 E-value=4.5e-12 Score=74.62 Aligned_cols=91 Identities=24% Similarity=0.280 Sum_probs=57.3
Q ss_pred hhcCCcEEEEEEECCChhh---HHHHHHH-HHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCCCccCCCCeEE
Q psy17510 15 YYTGTQGLIFVVDCADRDR---IDEARQE-LHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYV 89 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 89 (113)
.+..++.++++++...... .+....+ ...........++|+++++||+|+.+... .+.+.+.+ ..+.++
T Consensus 76 ~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~------~~~~~v 149 (185)
T d1lnza2 76 HIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL------TDDYPV 149 (185)
T ss_dssp HHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC------CSCCCB
T ss_pred HHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHh------ccCCcE
Confidence 4567889988887764321 1111111 11222233345789999999999875321 12222222 234578
Q ss_pred EeccccCCCCHHHHHHHHHhhc
Q psy17510 90 QPSCATTADGLYEGLTWLTSNH 111 (113)
Q Consensus 90 ~~~sa~~~~~i~~~~~~l~~~~ 111 (113)
+.+||++|.|++++++.+.+.+
T Consensus 150 ~~iSA~~g~Gi~~L~~~i~~~L 171 (185)
T d1lnza2 150 FPISAVTREGLRELLFEVANQL 171 (185)
T ss_dssp CCCSSCCSSTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 8999999999999999998765
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.16 E-value=2.8e-11 Score=72.51 Aligned_cols=91 Identities=21% Similarity=0.177 Sum_probs=60.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCe-EEEEEeCCCCCCCCC-H----HHHH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK-P----HEIQ 74 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~----~~~~ 74 (113)
||||++.|...+...+..+|++|+|+|+.+.-.. ...+.+..+.. .++| +++++||+|+.+... . .++.
T Consensus 73 DtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~-qt~~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~ 147 (204)
T d2c78a3 73 DCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVR 147 (204)
T ss_dssp ECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred eCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHH
Confidence 8999999999888899999999999999864333 33444555543 3565 778899999865211 1 1222
Q ss_pred HHhCCCccCCCCeEEEeccccC
Q psy17510 75 EKLGLTRIRDRNWYVQPSCATT 96 (113)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~sa~~ 96 (113)
+.+....+....++++..|+..
T Consensus 148 ~~l~~~~~~~~~i~~i~~sa~~ 169 (204)
T d2c78a3 148 DLLNQYEFPGDEVPVIRGSALL 169 (204)
T ss_dssp HHHHHTTSCTTTSCEEECCHHH
T ss_pred HHHHhcCCCcccceeeeeechh
Confidence 2222222334556788888764
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.07 E-value=6.8e-10 Score=68.88 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=48.2
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 65 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 65 (113)
||||+..|.......+.-+|++++|+|+...-. ..+.+.++.+.+ .++|.++++||+|..
T Consensus 73 DtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~-~~t~~~~~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 73 DAPGYGDFVGEIRGALEAADAALVAVSAEAGVQ-VGTERAWTVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp ECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred ccCchhhhhhhhhhhhcccCceEEEeeccCCcc-chhHHHHHhhhh----ccccccccccccccc
Confidence 899999999999999999999999999986422 333455555544 579999999999964
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.05 E-value=6e-10 Score=67.46 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=63.3
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhh------HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC-CCH---
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR------IDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKP--- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~--- 70 (113)
|||||..|...+.....-+|+.++|+|+.+... ...+.+.+..... ....++++++||+|+... ...
T Consensus 87 DtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~---~~~~~iIv~iNK~D~~~~~~~~~~~ 163 (224)
T d1jnya3 87 DAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLTEPPYDEKRY 163 (224)
T ss_dssp CCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGSSSTTCHHHH
T ss_pred eCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH---hCCCceEEEEEcccCCCccccHHHH
Confidence 899999999999999999999999999986411 1122222222211 133468899999998642 221
Q ss_pred HHHHHHh----CCCccCCCCeEEEeccccCCCCHH
Q psy17510 71 HEIQEKL----GLTRIRDRNWYVQPSCATTADGLY 101 (113)
Q Consensus 71 ~~~~~~~----~~~~~~~~~~~~~~~sa~~~~~i~ 101 (113)
+.+.... ..........+++++||..|.|+.
T Consensus 164 ~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~ 198 (224)
T d1jnya3 164 KEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT 198 (224)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred HHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence 1221211 111223456788999999998864
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.98 E-value=9.8e-10 Score=67.40 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=54.9
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhH------HHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCCCCC-CH--
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI------DEARQELHRIINDREMRDA-IILIFANKQDLPDAM-KP-- 70 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~-~~-- 70 (113)
|||||..|...+......+|++++|+|+.....- ..+.+.+..+.. .++ ++++++||+|+++.. ..
T Consensus 108 DtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~----~~i~~iiv~iNKmD~~~~~~~e~~ 183 (245)
T d1r5ba3 108 DAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEPSVQWSEER 183 (245)
T ss_dssp CCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTSTTCSSCHHH
T ss_pred cccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH----cCCCeEEEEEEcCCCCccchhHHH
Confidence 8999999999888889999999999999863110 123333333322 344 588999999987532 21
Q ss_pred -HHHHHHhCC---C--cc-CCCCeEEEeccccCCCCHHHHH
Q psy17510 71 -HEIQEKLGL---T--RI-RDRNWYVQPSCATTADGLYEGL 104 (113)
Q Consensus 71 -~~~~~~~~~---~--~~-~~~~~~~~~~sa~~~~~i~~~~ 104 (113)
.++.+.+.. . .. ....++++++||++|.|+.+++
T Consensus 184 ~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~ 224 (245)
T d1r5ba3 184 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 224 (245)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence 223222221 0 01 1124689999999999987654
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.97 E-value=4.6e-10 Score=68.67 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=61.7
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhH------HHHHHHHHHHHcCcCCCCC-eEEEEEeCCCCCCCCC--HH
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI------DEARQELHRIINDREMRDA-IILIFANKQDLPDAMK--PH 71 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~~--~~ 71 (113)
|||||..|...+......+|++|+|+|+....-. ..+.+.+..+.. .++ ++++++||+|+.+... ..
T Consensus 90 DtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~~d~~~~~ 165 (239)
T d1f60a3 90 DAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWDESRFQ 165 (239)
T ss_dssp ECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTCHHHHH
T ss_pred ECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCCCCHHHHH
Confidence 8999999999888899999999999999753110 123333333322 345 5888999999865321 11
Q ss_pred HHHHH----hCCCccCCCCeEEEeccccCCCCH
Q psy17510 72 EIQEK----LGLTRIRDRNWYVQPSCATTADGL 100 (113)
Q Consensus 72 ~~~~~----~~~~~~~~~~~~~~~~sa~~~~~i 100 (113)
++.+. +.........++++.+|+..|.|+
T Consensus 166 ~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni 198 (239)
T d1f60a3 166 EIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 198 (239)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence 22221 111111223467889999999875
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=1.5e-08 Score=58.62 Aligned_cols=89 Identities=15% Similarity=0.068 Sum_probs=56.3
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCC-HHHHHHHhCCCccCCCCeEEEecc
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPSC 93 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s 93 (113)
+...+++++++.|..+.. .....+...+.+ ...|.++++||.|+..... .....+.... .....+++++|
T Consensus 82 ~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~---~~~~~~~~~vS 152 (179)
T d1egaa1 82 SIGDVELVIFVVEGTRWT--PDDEMVLNKLRE----GKAPVILAVNKVDNVQEKADLLPHLQFLAS---QMNFLDIVPIS 152 (179)
T ss_dssp CCCCEEEEEEEEETTCCC--HHHHHHHHHHHS----SSSCEEEEEESTTTCCCHHHHHHHHHHHHT---TSCCSEEEECC
T ss_pred chhhcceeEEEEecCccc--hhHHHHHHHhhh----ccCceeeeeeeeeccchhhhhhhHhhhhhh---hcCCCCEEEEe
Confidence 345678888888877532 222333334433 4578999999999765321 1111111111 11345799999
Q ss_pred ccCCCCHHHHHHHHHhhcC
Q psy17510 94 ATTADGLYEGLTWLTSNHK 112 (113)
Q Consensus 94 a~~~~~i~~~~~~l~~~~~ 112 (113)
|++|.|++++++++...++
T Consensus 153 A~~g~gi~~L~~~i~~~lp 171 (179)
T d1egaa1 153 AETGLNVDTIAAIVRKHLP 171 (179)
T ss_dssp TTTTTTHHHHHHHHHTTCC
T ss_pred CcCCCCHHHHHHHHHHhCC
Confidence 9999999999999988763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.77 E-value=1.1e-08 Score=61.75 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=61.5
Q ss_pred HhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEe
Q psy17510 13 RHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP 91 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (113)
++-.++.|.+++|+.+.+|. +.....+++-.... .++|.+++.||+|+.+....+.+...... . ....+++.
T Consensus 5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~--~-~~~~~v~~ 77 (225)
T d1u0la2 5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEI--Y-SGLYPIVK 77 (225)
T ss_dssp TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH--H-TTTSCEEE
T ss_pred CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhcc--c-ccceeEEE
Confidence 45668899999999887653 45555666665543 68999999999999663222222222110 1 12356889
Q ss_pred ccccCCCCHHHHHHHHHh
Q psy17510 92 SCATTADGLYEGLTWLTS 109 (113)
Q Consensus 92 ~sa~~~~~i~~~~~~l~~ 109 (113)
+|++++.|++++.+++..
T Consensus 78 vSa~~~~g~~~L~~~l~~ 95 (225)
T d1u0la2 78 TSAKTGMGIEELKEYLKG 95 (225)
T ss_dssp CCTTTCTTHHHHHHHHSS
T ss_pred eccccchhHhhHHHHhcC
Confidence 999999999999887753
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.75 E-value=5.1e-09 Score=65.05 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=60.4
Q ss_pred hhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEE
Q psy17510 10 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 89 (113)
Q Consensus 10 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (113)
+.....++.+|+|++|+|+..|-+.. ...+..+. .++|+++|.||+|+.+....++..+.+.. .+...
T Consensus 7 r~i~~~i~~~DvIl~V~DaR~P~ss~--~~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~-----~~~~~ 74 (273)
T d1puja_ 7 REVTEKLKLIDIVYELVDARIPMSSR--NPMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFEN-----QGIRS 74 (273)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTS--CHHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHT-----TTCCE
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCCC--CHHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHh-----cCCcc
Confidence 34556899999999999998764322 23445553 36899999999999764334444444432 33457
Q ss_pred EeccccCCCCHHHHHHHHHh
Q psy17510 90 QPSCATTADGLYEGLTWLTS 109 (113)
Q Consensus 90 ~~~sa~~~~~i~~~~~~l~~ 109 (113)
+.+|+.++.|...+...+.+
T Consensus 75 i~isa~~~~~~~~~~~~~~~ 94 (273)
T d1puja_ 75 LSINSVNGQGLNQIVPASKE 94 (273)
T ss_dssp EECCTTTCTTGGGHHHHHHH
T ss_pred ceeecccCCCccccchhhhh
Confidence 79999999987776665543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=1.7e-08 Score=59.77 Aligned_cols=69 Identities=29% Similarity=0.329 Sum_probs=48.1
Q ss_pred CCCCccCchhhHHhh----hcCCcEEEEEEECCC-hhhHHHHHHHHHHHH---cCcCCCCCeEEEEEeCCCCCCCCC
Q psy17510 1 DVGGQDKIRPLWRHY----YTGTQGLIFVVDCAD-RDRIDEARQELHRII---NDREMRDAIILIFANKQDLPDAMK 69 (113)
Q Consensus 1 D~~G~~~~~~~~~~~----~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~---~~~~~~~~p~ilv~nK~D~~~~~~ 69 (113)
||||+++++..+..+ ...++.+++++|..+ ..+++....|+..+. +.....++|+++++||+|+.+...
T Consensus 52 D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 52 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp ECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred ecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 799999887766554 445588999999775 445666655554332 222346899999999999976543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=1.1e-07 Score=54.95 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=53.5
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCc-cCCCCeEEEeccccC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTR-IRDRNWYVQPSCATT 96 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sa~~ 96 (113)
....++.+.+...... .....++..... ...++++++||+|+.+........+.+.... ......+++.+||++
T Consensus 98 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~ 172 (188)
T d1puia_ 98 SLQGLVVLMDIRHPLK-DLDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLK 172 (188)
T ss_dssp TEEEEEEEEETTSCCC-HHHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTT
T ss_pred heeEEEEeecccccch-hHHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 4455555566654322 222344444433 4678999999999866433222222211100 112346799999999
Q ss_pred CCCHHHHHHHHHhhc
Q psy17510 97 ADGLYEGLTWLTSNH 111 (113)
Q Consensus 97 ~~~i~~~~~~l~~~~ 111 (113)
|.|++++++.|...+
T Consensus 173 g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 173 KQGVDKLRQKLDTWF 187 (188)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999987654
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=5.4e-08 Score=62.09 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=48.0
Q ss_pred CCCCccCchhhHHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCC
Q psy17510 1 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 64 (113)
Q Consensus 1 D~~G~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 64 (113)
|||||..|.......+.-+|++++|+|+.+.-... +...++.+.. .++|+++++||+|.
T Consensus 102 DtPGh~dF~~ev~~al~~~D~allVVda~eGv~~q-T~~~~~~a~~----~~~p~i~viNKiDr 160 (341)
T d1n0ua2 102 DSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQ-TETVLRQALG----ERIKPVVVINKVDR 160 (341)
T ss_dssp CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHH-HHHHHHHHHH----TTCEEEEEEECHHH
T ss_pred cCCCcHHHHHHHHHHHhhcCceEEEEecccCcchh-HHHHHHHHHH----cCCCeEEEEECccc
Confidence 89999999999988999999999999998753322 3455555544 57899999999995
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.55 E-value=4.4e-09 Score=63.74 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=61.2
Q ss_pred HhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHHHHHHhCCCccCCCCeEEEe
Q psy17510 13 RHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP 91 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (113)
++-..+.|.+++|+++.+|. +.....+++-.... .++|.+++.||+|+.++....+..+.+. ..+...+++++.
T Consensus 5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~-~~y~~~g~~v~~ 79 (231)
T d1t9ha2 5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYA-EDYRNIGYDVYL 79 (231)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHH-HHHHHHTCCEEE
T ss_pred CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHH-HHHhhcccccee
Confidence 44567899999999887653 56666666666643 6889999999999976432222222111 111223567899
Q ss_pred ccccCCCCHHHHHHHHH
Q psy17510 92 SCATTADGLYEGLTWLT 108 (113)
Q Consensus 92 ~sa~~~~~i~~~~~~l~ 108 (113)
+|+.++.|++++..++.
T Consensus 80 ~Sa~~~~gl~~L~~~l~ 96 (231)
T d1t9ha2 80 TSSKDQDSLADIIPHFQ 96 (231)
T ss_dssp CCHHHHTTCTTTGGGGT
T ss_pred eecCChhHHHHHHHhhc
Confidence 99999999888776654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.41 E-value=2e-08 Score=60.65 Aligned_cols=107 Identities=16% Similarity=-0.042 Sum_probs=58.4
Q ss_pred CCCCccCchhhHHh---h--hcCCcEEEEEEECCC---hhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHHH
Q psy17510 1 DVGGQDKIRPLWRH---Y--YTGTQGLIFVVDCAD---RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 72 (113)
Q Consensus 1 D~~G~~~~~~~~~~---~--~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 72 (113)
|+||+..+...... . ....+.+++++|+.. +............... .-..|.++++||+|+.+......
T Consensus 101 d~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~---~~~~~~ivvinK~D~~~~~~~~~ 177 (244)
T d1yrba1 101 DTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLLSEEEKER 177 (244)
T ss_dssp ECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGCCHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH---HhCCCceeeeeccccccHHHHHH
Confidence 57888655432211 1 124568889998763 2222222111111111 13579999999999876321111
Q ss_pred HH----------HHhC-CCc--------------cCCCCeEEEeccccCCCCHHHHHHHHHhh
Q psy17510 73 IQ----------EKLG-LTR--------------IRDRNWYVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 73 ~~----------~~~~-~~~--------------~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
.. .... ... .....++++.+||++|+|+++++..|.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 178 HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 10 0000 000 00234578999999999999999988764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=1.6e-06 Score=54.89 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=49.9
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCH----HHHHHHhCCCc--cCCCCeE
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP----HEIQEKLGLTR--IRDRNWY 88 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~--~~~~~~~ 88 (113)
....+|.+++|.++...+.......-+-+ ++-++|+||+|+.+.... .++........ ...-..+
T Consensus 164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e---------~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~ 234 (327)
T d2p67a1 164 VARMVDCFISLQIAGGGDDLQGIKKGLME---------VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPR 234 (327)
T ss_dssp HHTTCSEEEEEECC------CCCCHHHHH---------HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCE
T ss_pred hhhccceEEEEecCCCchhhhhhchhhhc---------cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcce
Confidence 45678999999877543222221222222 233789999998763221 22222222111 1122347
Q ss_pred EEeccccCCCCHHHHHHHHHhh
Q psy17510 89 VQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 89 ~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
++.|||++|.|++++.+.+.+.
T Consensus 235 V~~~SA~~g~Gi~eL~~~I~~~ 256 (327)
T d2p67a1 235 VLTCSALEKRGIDEIWHAIIDF 256 (327)
T ss_dssp EEECBGGGTBSHHHHHHHHHHH
T ss_pred eEEEEeeCCCCHHHHHHHHHHH
Confidence 9999999999999999988754
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.02 E-value=6.5e-06 Score=52.01 Aligned_cols=87 Identities=14% Similarity=0.061 Sum_probs=51.0
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCCCCHH-----HHHHHhCCCccC--CCCe
Q psy17510 15 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH-----EIQEKLGLTRIR--DRNW 87 (113)
Q Consensus 15 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-----~~~~~~~~~~~~--~~~~ 87 (113)
...-+|..++|..+...+..+....-+ ..++=++|+||+|+.+..... ++...+...... ....
T Consensus 161 ~~~~~D~~v~v~~p~~GD~iQ~~k~gi---------lE~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p 231 (323)
T d2qm8a1 161 VADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTP 231 (323)
T ss_dssp HHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCC
T ss_pred hhcccceEEEEeeccchhhhhhhhhhH---------hhhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCC
Confidence 345689999999887643322111111 123448999999987643321 122222211111 2234
Q ss_pred EEEeccccCCCCHHHHHHHHHhh
Q psy17510 88 YVQPSCATTADGLYEGLTWLTSN 110 (113)
Q Consensus 88 ~~~~~sa~~~~~i~~~~~~l~~~ 110 (113)
+++.+||++++|++++.+++.+.
T Consensus 232 ~V~~~Sa~~g~Gi~el~~~I~~~ 254 (323)
T d2qm8a1 232 PVVTISGLHGKGLDSLWSRIEDH 254 (323)
T ss_dssp CEEEEBTTTTBSHHHHHHHHHHH
T ss_pred ceEEEEecCCCCHHHHHHHHHHH
Confidence 79999999999999999988754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.49 E-value=0.00055 Score=44.15 Aligned_cols=104 Identities=10% Similarity=-0.089 Sum_probs=57.0
Q ss_pred CCCCccCchhh-----HHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC---------
Q psy17510 1 DVGGQDKIRPL-----WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD--------- 66 (113)
Q Consensus 1 D~~G~~~~~~~-----~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--------- 66 (113)
||||....... .+..+..+|.++++.|..-. .....+++.+.. .++|+++|.||+|...
T Consensus 113 DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~---~~d~~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~ 185 (400)
T d1tq4a_ 113 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFK---KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQ 185 (400)
T ss_dssp ECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCC---HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCT
T ss_pred eCCCcccccccHHHHHHHhhhhcceEEEEecCCCCC---HHHHHHHHHHHH----cCCCEEEEEeCcccccchhhhcccc
Confidence 78996544322 23345678888888765422 122344555543 4789999999999421
Q ss_pred CCCHHH----HHHHhCCC--ccCCCCeEEEeccccC--CCCHHHHHHHHHhhc
Q psy17510 67 AMKPHE----IQEKLGLT--RIRDRNWYVQPSCATT--ADGLYEGLTWLTSNH 111 (113)
Q Consensus 67 ~~~~~~----~~~~~~~~--~~~~~~~~~~~~sa~~--~~~i~~~~~~l~~~~ 111 (113)
..+... +.+..... ...-..-+++.+|..+ ..|+..+.+.+.+.+
T Consensus 186 ~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L 238 (400)
T d1tq4a_ 186 TFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 238 (400)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence 111111 11111100 0001223567777654 448889998887665
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.45 E-value=0.0028 Score=38.85 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=36.0
Q ss_pred hhHHhhhcCCcEEE-EEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 10 PLWRHYYTGTQGLI-FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 10 ~~~~~~~~~~~~vi-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
++...|+..++.++ +|.+.....+-.....+.+.+.. ...++++|.||+|..+.
T Consensus 153 ~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~----~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 153 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----TCSSEEEEEECGGGSCT
T ss_pred HHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCc----CCCceeeEEeccccccc
Confidence 55677888887555 55566554444555566666622 45789999999998654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.21 E-value=0.0048 Score=37.95 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=35.7
Q ss_pred hhhHHhhhcCCcEEEEEE-ECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 9 RPLWRHYYTGTQGLIFVV-DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 9 ~~~~~~~~~~~~~vi~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
..++..|+..++.+++++ +......-.....+.+.+.. ...++++|+||+|...
T Consensus 158 ~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~----~~~r~i~Vitk~D~~~ 212 (306)
T d1jwyb_ 158 RRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP----EGKRTIGVITKLDLMD 212 (306)
T ss_dssp HHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS----SCSSEEEEEECTTSSC
T ss_pred HHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc----CCCeEEEEEecccccc
Confidence 356778999999877776 43332223334555666522 4568999999999754
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.85 E-value=0.26 Score=28.33 Aligned_cols=50 Identities=10% Similarity=0.043 Sum_probs=34.5
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEE-EEEeCCCCCCC
Q psy17510 13 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDLPDA 67 (113)
Q Consensus 13 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~ 67 (113)
...+..+|.++++...+ ..+.....+.++.+.+ .+.|++ ++.|+.+..+.
T Consensus 128 ~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~ 178 (237)
T d1g3qa_ 128 MSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDR 178 (237)
T ss_dssp HHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTT
T ss_pred hhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhcccccccc
Confidence 34567899999999775 4566666666665543 456765 89999986543
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.75 E-value=0.12 Score=30.82 Aligned_cols=48 Identities=4% Similarity=-0.033 Sum_probs=28.9
Q ss_pred cCCcEEEEEEECCChh-h--HHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCC
Q psy17510 17 TGTQGLIFVVDCADRD-R--IDEARQELHRIINDREMRDAIILIFANKQDLPD 66 (113)
Q Consensus 17 ~~~~~vi~v~d~~~~~-~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 66 (113)
...|+++||++.+... + ......++....... --.+++++.||+|...
T Consensus 111 ~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 111 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP 161 (257)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred CCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence 3568899998876431 2 222234444443211 2358899999999764
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=0.21 Score=29.08 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=27.1
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHcCcCCCCCeEEEEEeCCCCCCC
Q psy17510 18 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 67 (113)
Q Consensus 18 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 67 (113)
..++++.|+|+......-.....+...... .+ ++++||+|+.+.
T Consensus 121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~---AD---~ivlNK~Dl~~~ 164 (222)
T d1nija1 121 LLDGVIALVDAVHADEQMNQFTIAQSQVGY---AD---RILLTKTDVAGE 164 (222)
T ss_dssp EEEEEEEEEETTTHHHHHHHCHHHHHHHHT---CS---EEEEECTTTCSC
T ss_pred cccchhhhhhhhhhhhhhhhhHHHHHHHHh---CC---cccccccccccH
Confidence 357899999998754333333333333232 22 688999998654
|