Psyllid ID: psy17514

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE
Secondary Structure (PSIPRED)
cEEEEEEEcccccccccEEEcccccccEEEEccccccHHHHHHHHHHHHccccccccccccccEEEccccccccEEEEEEEEEcccccccccccccccEEEEEEEEEEccccEEEEccccccHHHHHHHHHHcccccccccEEEEcccHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccccccEEEcccccccEEEEccccccHHHHHHHHHHHHHHHHHHHcHHcHHHHEEccccccccEEEEEEEEEcccccccccccccccEEEEEEEEEEccccEEEEccccccHHHHHHHHHccccccccccEHHEcccHHHHEcccccc
Coil and Loop (DISEMBL)
myiksmvldgfksygtrveindfdrefnaitglngtgksnildgICFVLGIQVKQVRANTLQELIYKngqagvtkasvtltfdnsdkkncpigyendntIVICRqisipsntrymingssvnpkrVSDLFSSvnlnvnnphflIMQGRVTKVLNMKPHE
Flexible Loop (DISEMBL)
myiksmvldgfksyGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIykngqagvtkasvtltfdnsdkkncpigyendntiVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE
Low Complexity Region (SEG)
MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE
Disordered region (IsUnstruct)
****SMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVL******
Disordered Region (DISOPRED)
MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVT**LNM****
Disordered Region (DISEMBL)
MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE
Disordered Region (DISPRO)
MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNM****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q90988	1189	Structural maintenance of	yes	N/A	1.0	0.133	0.675	2e-59
Q8CG48	1191	Structural maintenance of	yes	N/A	1.0	0.133	0.662	3e-58
O95347	1197	Structural maintenance of	yes	N/A	1.0	0.132	0.662	4e-58
P50533	1203	Structural maintenance of	N/A	N/A	1.0	0.132	0.65	3e-57
Q54PK4	1184	Structural maintenance of	yes	N/A	1.0	0.134	0.65	4e-55
Q9C5Y4	1175	Structural maintenance of	yes	N/A	1.0	0.135	0.625	4e-55
Q9SN90	1171	Structural maintenance of	no	N/A	1.0	0.135	0.612	6e-54
P38989	1170	Structural maintenance of	yes	N/A	1.0	0.135	0.606	2e-53
P41003	1172	Structural maintenance of	yes	N/A	1.0	0.135	0.575	3e-48
Q8IED2	1218	Structural maintenance of	yes	N/A	0.993	0.129	0.555	2e-46

>sp|Q90988|SMC2_CHICK Structural maintenance of chromosomes protein 2 OS=Gallus gallus GN=SMC2 PE=2 SV=1

 Score =  227 bits (579), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 108/160 (67%), Positives = 132/160 (82%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           MYIKS+VL+GFKSY  R EI DFD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct: 1   MYIKSIVLEGFKSYAQRTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
           +LQ+L+YKNGQAGV KA+V++TFDNSDKKN P+G+EN++ I I RQ+ +    +Y+ING 
Sbjct: 61  SLQDLVYKNGQAGVNKATVSITFDNSDKKNSPLGFENNDEITITRQVIVGGRNKYLINGM 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           + +  RV DLF SV LNVNNPHFLIMQG++TKVLNMKP E
Sbjct: 121 NASNNRVQDLFGSVGLNVNNPHFLIMQGQITKVLNMKPTE 160

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.
Gallus gallus (taxid: 9031)

>sp|Q8CG48|SMC2_MOUSE Structural maintenance of chromosomes protein 2 OS=Mus musculus GN=Smc2 PE=1 SV=2

 Score =  223 bits (569), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 106/160 (66%), Positives = 129/160 (80%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           MY+KS++L+GFKSY  R E+N FD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct: 1   MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
            LQ+L+YKNGQAG+TKASV++TFDNSDKK  P+G+E  + I + RQ+ I    +Y+ING 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGV 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           + N  RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPE 160

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Mus musculus (taxid: 10090)

>sp|O95347|SMC2_HUMAN Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2 PE=1 SV=2

 Score =  223 bits (568), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 106/160 (66%), Positives = 129/160 (80%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           M+IKS++L+GFKSY  R E+N FD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
            LQ+L+YKNGQAG+TKASV++TFDNSDKK  P+G+E  + I + RQ+ I    +Y+ING 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGV 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           + N  RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPE 160

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Homo sapiens (taxid: 9606)

>sp|P50533|SMC2_XENLA Structural maintenance of chromosomes protein 2 OS=Xenopus laevis GN=smc2 PE=1 SV=1

 Score =  220 bits (561), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 104/160 (65%), Positives = 128/160 (80%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           M++KS+++DGFKSY  R EIN FD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct: 1   MHVKSIIIDGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLTQVRAS 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
            LQ+L+YKNGQAG+TKA+V++TFDN DKK  P+G+E  + I + RQ+ I    +Y+ING 
Sbjct: 61  NLQDLVYKNGQAGITKATVSITFDNYDKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGV 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           + N  RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPE 160

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Xenopus laevis (taxid: 8355)

>sp|Q54PK4|SMC2_DICDI Structural maintenance of chromosomes protein 2 OS=Dictyostelium discoideum GN=smc2 PE=3 SV=1

 Score =  213 bits (542), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 104/160 (65%), Positives = 125/160 (78%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           MYI+ +++DGFKSY  R  I  FD  FNAITGLNG+GKSNILD ICFVLGI  + QVR +
Sbjct: 1   MYIEDIIIDGFKSYANRTVIEGFDPTFNAITGLNGSGKSNILDSICFVLGISNLSQVRVD 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
           +LQEL+YK GQAG+TKASVT+TF+NSDKK  P GYE+ + I + RQ++I    +Y+ING 
Sbjct: 61  SLQELVYKKGQAGITKASVTITFNNSDKKQSPAGYEHLDKITVTRQVAIGGRNKYLINGH 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           +    RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NAQLSRVQDLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE 160

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9C5Y4|SMC21_ARATH Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis thaliana GN=SMC2-1 PE=2 SV=2

 Score =  213 bits (542), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 100/160 (62%), Positives = 123/160 (76%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           M+IK + L+GFKSY TR  ++ FD  FNAITGLNG+GKSNILD ICFVLGI  ++QVRA 
Sbjct: 1   MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
            LQEL+YK GQAG+TKA+V++TFDNS++   P+GYE    I + RQI +    +Y+ING 
Sbjct: 61  NLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYLINGK 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
              P +V +LF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE 160

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. Also involved in chromosome segregation in meiosis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN90|SMC22_ARATH Structural maintenance of chromosomes protein 2-2 OS=Arabidopsis thaliana GN=SMC2-2 PE=2 SV=1

 Score =  209 bits (532), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 98/160 (61%), Positives = 124/160 (77%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           M+IK + L+GFKSY TR  +  FD  FNAITGLNG+GKSNILD ICFVLGI  ++QVRA 
Sbjct: 1   MHIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
            LQEL+YK GQAG+T+A+V++TFDNS++   P+G+E+ + I + RQI +    +Y+ING 
Sbjct: 61  NLQELVYKQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYLINGK 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
              P +V +LF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 LAQPNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPME 160

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. Also involved in chromosome segregation in meiosis.

Arabidopsis thaliana (taxid: 3702)

>sp|P38989|SMC2_YEAST Structural maintenance of chromosomes protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMC2 PE=1 SV=1

 Score =  207 bits (527), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 123/160 (76%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           M ++ +++DGFKSY TR  I D+D +FNAITGLNG+GKSNILD ICFVLGI  +  VRA+
Sbjct: 1   MKVEELIIDGFKSYATRTVITDWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
           +LQ+LIYK GQAGVTKASVT+ FDN+DK N PIG+ N   I + RQ+ +   ++Y+ING 
Sbjct: 61  SLQDLIYKRGQAGVTKASVTIVFDNTDKSNSPIGFTNSPQISVTRQVVLGGTSKYLINGH 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
               + V  LF SV LN+NNP+FLIMQG++TKVLNMKP E
Sbjct: 121 RAPQQSVLQLFQSVQLNINNPNFLIMQGKITKVLNMKPSE 160

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P41003|SMC2_SCHPO Structural maintenance of chromosomes protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut14 PE=1 SV=2

 Score =  190 bits (483), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 92/160 (57%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           M I+ +++DGFKSY  R  I+++D +FNAITGLNG+GKSNILD ICFVLGI  +  VRA 
Sbjct: 1   MKIEELIIDGFKSYAVRTVISNWDDQFNAITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
            LQ+LIYK GQAG+T+ASVT+ F+N D  + PIG+EN   + + RQI +   ++Y+ING 
Sbjct: 61  NLQDLIYKRGQAGITRASVTIVFNNRDPASSPIGFENHPQVSVTRQIIMGGTSKYLINGH 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
               + V +LF SV LN+NNP+FLIMQGR+TKVLNMK  E
Sbjct: 121 RALQQNVQNLFQSVQLNINNPNFLIMQGRITKVLNMKATE 160

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8IED2|SMC2_PLAF7 Structural maintenance of chromosomes protein 2 OS=Plasmodium falciparum (isolate 3D7) GN=MAL13P1.96 PE=3 SV=1

 Score =  184 bits (468), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/162 (55%), Positives = 116/162 (71%), Gaps = 4/162 (2%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
           MYI+ ++LDGFKSY T+  I  F  +FNAITGLNG+GKSN+LD ICFV+GI  +  +R N
Sbjct: 1   MYIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIG--YENDNTIVICRQISIPSNTRYMIN 117
            L ELIYK GQAG+TK SVT+ F+N +K   P+   Y +   I I RQI +    RY++N
Sbjct: 61  RLDELIYKQGQAGITKGSVTIKFNNEEKP-SPLQEPYRDMKNITITRQIVLGGRNRYLLN 119

Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
             +  PK +SD F S+ LN+NNPHFLIMQG++TKV+NMKP E
Sbjct: 120 SHNAKPKDISDFFQSLKLNINNPHFLIMQGKITKVINMKPIE 161

May play a role in the conversion of interphase chromatin into condensed chromosomes.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
357613986	1251	putative structural maintenance of chrom	1.0	0.127	0.718	8e-64
443733768	401	hypothetical protein CAPTEDRAFT_76358, p	1.0	0.396	0.687	4e-60
307207691	1177	Structural maintenance of chromosomes pr	1.0	0.135	0.706	1e-59
157136238	1182	structural maintenance of chromosomes sm	1.0	0.134	0.7	3e-59
307173964	1177	Structural maintenance of chromosomes pr	1.0	0.135	0.7	3e-59
321478769	1195	structural maintenance of chromosome pro	1.0	0.133	0.693	3e-59
170048005	1178	structural maintenance of chromosomes sm	1.0	0.134	0.693	5e-59
443685367	1212	hypothetical protein CAPTEDRAFT_95567 [C	1.0	0.131	0.687	2e-58
380029603	1177	PREDICTED: structural maintenance of chr	1.0	0.135	0.693	2e-58
340373781	1171	PREDICTED: structural maintenance of chr	1.0	0.135	0.675	3e-58

>gi|357613986|gb|EHJ68833.1| putative structural maintenance of chromosome [Danaus plexippus]

 Score =  248 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 115/160 (71%), Positives = 133/160 (83%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           MYIKS+ LDGFKSYG RVE+N FD EFNAITGLNGTGKSNILD ICFVLGI  +  VRA 
Sbjct: 1   MYIKSITLDGFKSYGNRVEVNGFDPEFNAITGLNGTGKSNILDSICFVLGITNLSNVRAG 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
           +LQELIYK+GQAG+TKA+V++TFDN DK+ CPIGYEN + I + RQ+ +    +Y+ING 
Sbjct: 61  SLQELIYKHGQAGITKATVSITFDNRDKRQCPIGYENHDEITVTRQVVMGGKNKYLINGI 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           +V  KRVSDLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NVQNKRVSDLFCSVQLNVNNPHFLIMQGRITKVLNMKPPE 160

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443733768|gb|ELU17997.1| hypothetical protein CAPTEDRAFT_76358, partial [Capitella teleta]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/160 (68%), Positives = 128/160 (80%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
           MYIKSMV+DGFKSY  R EIN FD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA 
Sbjct: 1   MYIKSMVIDGFKSYAQRTEINGFDSLFNAITGLNGSGKSNILDAICFLLGITNLTQVRAT 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
            LQEL+YKNGQAGVTKA+V++TFDN+DK+  P+GYE    I + RQ+ I    RY+INGS
Sbjct: 61  NLQELVYKNGQAGVTKATVSVTFDNTDKRQSPLGYEQYEEITVTRQVVIGGRNRYLINGS 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           + N  RV D+F SV LN+NNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NANNTRVQDMFRSVQLNINNPHFLIMQGRITKVLNMKPPE 160

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|307207691|gb|EFN85328.1| Structural maintenance of chromosomes protein 2 [Harpegnathos saltator]

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 113/160 (70%), Positives = 134/160 (83%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           MYIKSMVL+GFKSYG R+EIN FD+EFNAITG NG+GKSNILD ICFVLGI  + QVRA 
Sbjct: 1   MYIKSMVLEGFKSYGKRIEINGFDKEFNAITGFNGSGKSNILDAICFVLGITNLGQVRAT 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
           +LQ+L+YK+GQAG+ KASVT+TFDN D+++ P+GYE+   IVI RQ+ I    +YMING+
Sbjct: 61  SLQDLVYKSGQAGIKKASVTITFDNHDRESSPMGYEHHEEIVITRQVVIGGKNKYMINGT 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           +V  KRV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NVQNKRVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPIE 160

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157136238|ref|XP_001656789.1| structural maintenance of chromosomes smc2 [Aedes aegypti] gi|108881057|gb|EAT45282.1| AAEL003449-PA [Aedes aegypti]

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 112/160 (70%), Positives = 130/160 (81%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           MYIKS+++DGFKSYG R EI+ FD EFNAITGLNGTGKSNILD ICFVLGI  +  VRA 
Sbjct: 1   MYIKSIIIDGFKSYGKRTEIHGFDPEFNAITGLNGTGKSNILDSICFVLGISNLVHVRAT 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
           +LQEL+YK+GQAGVTKA+VTL FDN+DK  CP+GYE  N I I RQI +    +Y+ING 
Sbjct: 61  SLQELVYKSGQAGVTKATVTLVFDNTDKDQCPLGYEKCNEISITRQIVVGGKNKYLINGK 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           +V  K+V DLF SV LNVNNP+FLIMQGR+TKVLNMKP E
Sbjct: 121 TVQNKKVQDLFCSVQLNVNNPNFLIMQGRITKVLNMKPQE 160

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173964|gb|EFN64694.1| Structural maintenance of chromosomes protein 2 [Camponotus floridanus]

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 112/160 (70%), Positives = 135/160 (84%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           MYIKSM+L+GFKSYG R+EIN+FD+EFNAITG NGTGKSNILD ICFVLGI  + QVRA 
Sbjct: 1   MYIKSMILEGFKSYGKRIEINNFDKEFNAITGFNGTGKSNILDAICFVLGITNLGQVRAT 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
           +LQ+L+YK+GQAGV KASVT+ FDN D+++ P+GYE+ + I+I RQ+ I    +YM+NGS
Sbjct: 61  SLQDLVYKSGQAGVKKASVTIIFDNHDRESSPMGYEHHDEIIITRQVIIGGKNKYMLNGS 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           +V  KRV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NVPNKRVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPVE 160

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478769|gb|EFX89726.1| structural maintenance of chromosome protein 2 [Daphnia pulex]

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 111/160 (69%), Positives = 128/160 (80%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           MYIKSMV+DGFKSYG R EIN FD  FNAITGLNG+GKSNILD ICF+LGI  +  VRA 
Sbjct: 1   MYIKSMVVDGFKSYGQRTEINGFDPMFNAITGLNGSGKSNILDAICFLLGITNLSHVRAT 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
            LQEL+YK+GQAGVTKA+VT+TFDN DKK  PIGYE+ + + + RQ+ I    +Y+INGS
Sbjct: 61  NLQELVYKSGQAGVTKATVTVTFDNKDKKQSPIGYEHYDEVTVTRQVVIGGKNKYLINGS 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           +V   RV D F SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NVQNNRVQDFFRSVQLNVNNPHFLIMQGRITKVLNMKPPE 160

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170048005|ref|XP_001851491.1| structural maintenance of chromosomes smc2 [Culex quinquefasciatus] gi|167870242|gb|EDS33625.1| structural maintenance of chromosomes smc2 [Culex quinquefasciatus]

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 111/160 (69%), Positives = 130/160 (81%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           MYIKS+++DGFKSYG R E++ FD EFNAITGLNGTGKSNILD ICFVLGI  +  VRA 
Sbjct: 1   MYIKSIIIDGFKSYGKRTEVHGFDPEFNAITGLNGTGKSNILDSICFVLGISNLVHVRAT 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
           +LQEL+YK+GQAGVTKA+VTL FDN+DK  CP+GYE  N I I RQI +    +Y+ING 
Sbjct: 61  SLQELVYKSGQAGVTKATVTLVFDNTDKDQCPLGYEKCNEISITRQIVVGGKNKYLINGK 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           +V  K+V DLF SV LNVNNP+FLIMQGR+TKVLNMKP E
Sbjct: 121 TVQNKKVQDLFCSVQLNVNNPNFLIMQGRITKVLNMKPQE 160

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443685367|gb|ELT89001.1| hypothetical protein CAPTEDRAFT_95567 [Capitella teleta]

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 110/160 (68%), Positives = 128/160 (80%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           MYIKSMV+DGFKSY  R EIN FD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA 
Sbjct: 1   MYIKSMVIDGFKSYAQRTEINGFDSLFNAITGLNGSGKSNILDAICFLLGITNLTQVRAT 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
            LQEL+YKNGQAGVTKA+V++TFDN+DK+  P+GYE    I + RQ+ I    RY+INGS
Sbjct: 61  NLQELVYKNGQAGVTKATVSVTFDNTDKRQSPLGYEQYEEITVTRQVVIGGRNRYLINGS 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           + N  RV D+F SV LN+NNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NANNTRVQDMFRSVQLNINNPHFLIMQGRITKVLNMKPPE 160

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|380029603|ref|XP_003698458.1| PREDICTED: structural maintenance of chromosomes protein 2-like [Apis florea]

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 111/160 (69%), Positives = 134/160 (83%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           MYIKSMVL+GFKSYG R+EINDF++EFNAITG NG+GKSNILD ICFVLGI  + QVRA 
Sbjct: 1   MYIKSMVLEGFKSYGKRIEINDFNKEFNAITGFNGSGKSNILDAICFVLGISNLGQVRAT 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
           +LQ+L+YK+GQAGV KASVT+TFDN D+ + P+GYE+   I++ RQ+ I    +Y+INGS
Sbjct: 61  SLQDLVYKSGQAGVKKASVTITFDNRDRDSSPMGYEHHEEIIVTRQVVIGGKNKYLINGS 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           +V  KRV D+F SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NVQNKRVQDMFCSVQLNVNNPHFLIMQGRITKVLNMKPME 160

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340373781|ref|XP_003385418.1| PREDICTED: structural maintenance of chromosomes protein 2-like [Amphimedon queenslandica]

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 108/160 (67%), Positives = 130/160 (81%), Gaps = 1/160 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
           M+IKS+V+DGFKSY  R E+  FD +FNAITGLNG+GKSNILD ICF+LGI  + QVRA 
Sbjct: 1   MFIKSIVIDGFKSYAHRTEVGPFDPQFNAITGLNGSGKSNILDSICFLLGISNLSQVRAG 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
           +LQEL+YK GQAGVTKA+VT+TFDNSDKK  P+GY++ + I + RQ+ I    +Y+INGS
Sbjct: 61  SLQELVYKGGQAGVTKATVTITFDNSDKKQSPVGYDSFDEITVSRQVVIGGRNKYLINGS 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           +  P RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NAPPTRVQDLFRSVQLNVNNPHFLIMQGRITKVLNMKPVE 160

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
UNIPROTKB|E1C614	1149	E1C614 "Uncharacterized protei	1.0	0.138	0.675	2e-54
UNIPROTKB|Q90988	1189	SMC2 "Structural maintenance o	1.0	0.133	0.675	2.2e-54
MGI|MGI:106067	1191	Smc2 "structural maintenance o	1.0	0.133	0.662	1.6e-53
UNIPROTKB|D4A5Q2	1191	Smc2 "Structural maintenance o	1.0	0.133	0.662	1.6e-53
RGD|1305227	1230	Smc2 "structural maintenance o	1.0	0.129	0.662	1.8e-53
UNIPROTKB|E1C610	1173	E1C610 "Structural maintenance	1.0	0.135	0.670	2e-53
UNIPROTKB|E1C612	1173	E1C612 "Uncharacterized protei	1.0	0.135	0.670	2e-53
UNIPROTKB|E1C782	1190	E1C782 "Uncharacterized protei	1.0	0.133	0.670	2.1e-53
UNIPROTKB|E1C611	1192	E1C611 "Structural maintenance	1.0	0.133	0.670	2.1e-53
UNIPROTKB|F1SP73	1169	F1SP73 "Uncharacterized protei	1.0	0.136	0.662	5.3e-53

UNIPROTKB|E1C614 E1C614 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 572 (206.4 bits), Expect = 2.0e-54, P = 2.0e-54
 Identities = 108/160 (67%), Positives = 132/160 (82%)

Query:     1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
             MYIKS+VL+GFKSY  R EI DFD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct:     1 MYIKSIVLEGFKSYAQRTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query:    60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
             +LQ+L+YKNGQAGV KA+V++TFDNSDKKN P+G+EN++ I I RQ+ +    +Y+ING 
Sbjct:    61 SLQDLVYKNGQAGVNKATVSITFDNSDKKNSPLGFENNDEITITRQVIVGGRNKYLINGM 120

Query:   120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
             + +  RV DLF SV LNVNNPHFLIMQG++TKVLNMKP E
Sbjct:   121 NASNNRVQDLFGSVGLNVNNPHFLIMQGQITKVLNMKPTE 160

GO:0000796 "condensin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

UNIPROTKB|Q90988 SMC2 "Structural maintenance of chromosomes protein 2" [Gallus gallus (taxid:9031)]

 Score = 572 (206.4 bits), Expect = 2.2e-54, P = 2.2e-54
 Identities = 108/160 (67%), Positives = 132/160 (82%)

Query:     1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
             MYIKS+VL+GFKSY  R EI DFD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct:     1 MYIKSIVLEGFKSYAQRTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query:    60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
             +LQ+L+YKNGQAGV KA+V++TFDNSDKKN P+G+EN++ I I RQ+ +    +Y+ING 
Sbjct:    61 SLQDLVYKNGQAGVNKATVSITFDNSDKKNSPLGFENNDEITITRQVIVGGRNKYLINGM 120

Query:   120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
             + +  RV DLF SV LNVNNPHFLIMQG++TKVLNMKP E
Sbjct:   121 NASNNRVQDLFGSVGLNVNNPHFLIMQGQITKVLNMKPTE 160

GO:0000796 "condensin complex" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:106067 Smc2 "structural maintenance of chromosomes 2" [Mus musculus (taxid:10090)]

 Score = 564 (203.6 bits), Expect = 1.6e-53, P = 1.6e-53
 Identities = 106/160 (66%), Positives = 129/160 (80%)

Query:     1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
             MY+KS++L+GFKSY  R E+N FD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct:     1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query:    60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
              LQ+L+YKNGQAG+TKASV++TFDNSDKK  P+G+E  + I + RQ+ I    +Y+ING 
Sbjct:    61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGV 120

Query:   120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
             + N  RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct:   121 NANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPE 160

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000228 "nuclear chromosome" evidence=ISO

GO:0000793 "condensed chromosome" evidence=ISO;IDA

GO:0000796 "condensin complex" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=ISO

GO:0010032 "meiotic chromosome condensation" evidence=IMP

GO:0030261 "chromosome condensation" evidence=IEA

GO:0045132 "meiotic chromosome segregation" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0051276 "chromosome organization" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0051383 "kinetochore organization" evidence=IMP

UNIPROTKB|D4A5Q2 Smc2 "Structural maintenance of chromosomes protein" [Rattus norvegicus (taxid:10116)]

 Score = 564 (203.6 bits), Expect = 1.6e-53, P = 1.6e-53
 Identities = 106/160 (66%), Positives = 129/160 (80%)

Query:     1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
             MY+KS++L+GFKSY  R E+N FD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct:     1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query:    60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
              LQ+L+YKNGQAG+TKASV++TFDNSDKK  P+G+E  + I + RQ+ I    +Y+ING 
Sbjct:    61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGV 120

Query:   120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
             + N  RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct:   121 NANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPE 160

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0000796 "condensin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0010032 "meiotic chromosome condensation" evidence=IEA

GO:0045132 "meiotic chromosome segregation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0051383 "kinetochore organization" evidence=IEA

RGD|1305227 Smc2 "structural maintenance of chromosomes 2" [Rattus norvegicus (taxid:10116)]

 Score = 564 (203.6 bits), Expect = 1.8e-53, P = 1.8e-53
 Identities = 106/160 (66%), Positives = 129/160 (80%)

Query:     1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
             MY+KS++L+GFKSY  R E+N FD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct:     1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query:    60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
              LQ+L+YKNGQAG+TKASV++TFDNSDKK  P+G+E  + I + RQ+ I    +Y+ING 
Sbjct:    61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGV 120

Query:   120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
             + N  RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct:   121 NANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPE 160

GO:0000228 "nuclear chromosome" evidence=ISO

GO:0000793 "condensed chromosome" evidence=ISO

GO:0000796 "condensin complex" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA;ISO

GO:0010032 "meiotic chromosome condensation" evidence=ISO

GO:0045132 "meiotic chromosome segregation" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0051383 "kinetochore organization" evidence=ISO

UNIPROTKB|E1C610 E1C610 "Structural maintenance of chromosomes protein" [Gallus gallus (taxid:9031)]

 Score = 563 (203.2 bits), Expect = 2.0e-53, P = 2.0e-53
 Identities = 108/161 (67%), Positives = 132/161 (81%)

Query:     1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
             MYIKS+VL+GFKSY  R EI DFD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct:     1 MYIKSIVLEGFKSYAQRTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query:    60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
             +LQ+L+YKNGQAGV KA+V++TFDNSDKKN P+G+EN++ I I RQ+ +    +Y+ING 
Sbjct:    61 SLQDLVYKNGQAGVNKATVSITFDNSDKKNSPLGFENNDEITITRQVIVGGRNKYLINGM 120

Query:   120 SVNPKRVSDLFSSVNLNVNNPHFLIMQ-GRVTKVLNMKPHE 159
             + +  RV DLF SV LNVNNPHFLIMQ G++TKVLNMKP E
Sbjct:   121 NASNNRVQDLFGSVGLNVNNPHFLIMQQGQITKVLNMKPTE 161

GO:0000796 "condensin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1C612 E1C612 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 563 (203.2 bits), Expect = 2.0e-53, P = 2.0e-53
 Identities = 108/161 (67%), Positives = 132/161 (81%)

Query:     1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
             MYIKS+VL+GFKSY  R EI DFD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct:     1 MYIKSIVLEGFKSYAQRTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query:    60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
             +LQ+L+YKNGQAGV KA+V++TFDNSDKKN P+G+EN++ I I RQ+ +    +Y+ING 
Sbjct:    61 SLQDLVYKNGQAGVNKATVSITFDNSDKKNSPLGFENNDEITITRQVIVGGRNKYLINGM 120

Query:   120 SVNPKRVSDLFSSVNLNVNNPHFLIMQ-GRVTKVLNMKPHE 159
             + +  RV DLF SV LNVNNPHFLIMQ G++TKVLNMKP E
Sbjct:   121 NASNNRVQDLFGSVGLNVNNPHFLIMQQGQITKVLNMKPTE 161

GO:0000796 "condensin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

UNIPROTKB|E1C782 E1C782 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 563 (203.2 bits), Expect = 2.1e-53, P = 2.1e-53
 Identities = 108/161 (67%), Positives = 132/161 (81%)

Query:     1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
             MYIKS+VL+GFKSY  R EI DFD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct:     1 MYIKSIVLEGFKSYAQRTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query:    60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
             +LQ+L+YKNGQAGV KA+V++TFDNSDKKN P+G+EN++ I I RQ+ +    +Y+ING 
Sbjct:    61 SLQDLVYKNGQAGVNKATVSITFDNSDKKNSPLGFENNDEITITRQVIVGGRNKYLINGM 120

Query:   120 SVNPKRVSDLFSSVNLNVNNPHFLIMQ-GRVTKVLNMKPHE 159
             + +  RV DLF SV LNVNNPHFLIMQ G++TKVLNMKP E
Sbjct:   121 NASNNRVQDLFGSVGLNVNNPHFLIMQQGQITKVLNMKPTE 161

GO:0000796 "condensin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

UNIPROTKB|E1C611 E1C611 "Structural maintenance of chromosomes protein" [Gallus gallus (taxid:9031)]

 Score = 563 (203.2 bits), Expect = 2.1e-53, P = 2.1e-53
 Identities = 108/161 (67%), Positives = 132/161 (81%)

Query:     1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
             MYIKS+VL+GFKSY  R EI DFD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct:     1 MYIKSIVLEGFKSYAQRTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query:    60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
             +LQ+L+YKNGQAGV KA+V++TFDNSDKKN P+G+EN++ I I RQ+ +    +Y+ING 
Sbjct:    61 SLQDLVYKNGQAGVNKATVSITFDNSDKKNSPLGFENNDEITITRQVIVGGRNKYLINGM 120

Query:   120 SVNPKRVSDLFSSVNLNVNNPHFLIMQ-GRVTKVLNMKPHE 159
             + +  RV DLF SV LNVNNPHFLIMQ G++TKVLNMKP E
Sbjct:   121 NASNNRVQDLFGSVGLNVNNPHFLIMQQGQITKVLNMKPTE 161

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0000796 "condensin complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0010032 "meiotic chromosome condensation" evidence=IEA

GO:0045132 "meiotic chromosome segregation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0051383 "kinetochore organization" evidence=IEA

UNIPROTKB|F1SP73 F1SP73 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 559 (201.8 bits), Expect = 5.3e-53, P = 5.3e-53
 Identities = 106/160 (66%), Positives = 129/160 (80%)

Query:     1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
             M+IKS++L+GFKSY  R E+N FD  FNAITGLNG+GKSNILD ICF+LGI  + QVRA+
Sbjct:     1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query:    60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
              LQ+L+YKNGQAG+TKASV++TFDNSDKK  P+G+E  + I + RQ+ I    +Y+ING 
Sbjct:    61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGV 120

Query:   120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
             + N  RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct:   121 NANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPE 160

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000796 "condensin complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5Y4	SMC21_ARATH	No assigned EC number	0.625	1.0	0.1353	yes	N/A
O95347	SMC2_HUMAN	No assigned EC number	0.6625	1.0	0.1328	yes	N/A
P38989	SMC2_YEAST	No assigned EC number	0.6062	1.0	0.1358	yes	N/A
Q09591	MIX1_CAEEL	No assigned EC number	0.5151	0.9748	0.1245	yes	N/A
Q8CG48	SMC2_MOUSE	No assigned EC number	0.6625	1.0	0.1335	yes	N/A
P41003	SMC2_SCHPO	No assigned EC number	0.575	1.0	0.1356	yes	N/A
Q90988	SMC2_CHICK	No assigned EC number	0.675	1.0	0.1337	yes	N/A
Q8IED2	SMC2_PLAF7	No assigned EC number	0.5555	0.9937	0.1297	yes	N/A
Q54PK4	SMC2_DICDI	No assigned EC number	0.65	1.0	0.1342	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	159
cd03273	251	cd03273, ABC_SMC2_euk, ATP-binding cassette domain	2e-88
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-55
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	2e-50
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-34
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-28
cd03278	197	cd03278, ABC_SMC_barmotin, ATP-binding cassette do	2e-26
cd03272	243	cd03272, ABC_SMC3_euk, ATP-binding cassette domain	6e-26
cd03275	247	cd03275, ABC_SMC1_euk, ATP-binding cassette domain	7e-24
cd03239	178	cd03239, ABC_SMC_head, The SMC head domain belongs	9e-23
cd03274	212	cd03274, ABC_SMC4_euk, ATP-binding cassette domain	3e-18
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-14
cd03241	276	cd03241, ABC_RecN, ATP-binding cassette domain of	4e-13
pfam13476	204	pfam13476, AAA_23, AAA domain	8e-12
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	9e-12
COG0497	557	COG0497, RecN, ATPase involved in DNA repair [DNA	7e-10
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	9e-09
TIGR00634	563	TIGR00634, recN, DNA repair protein RecN	1e-08
PRK00064	361	PRK00064, recF, recombination protein F; Reviewed	1e-07
COG1195	363	COG1195, RecF, Recombinational DNA repair ATPase (	2e-07
cd03279	213	cd03279, ABC_sbcCD, ATP-binding cassette domain of	4e-07
TIGR00611	365	TIGR00611, recf, recF protein	5e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-05
cd03242	270	cd03242, ABC_RecF, ATP-binding cassette domain of	2e-05
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	2e-05
cd03276	198	cd03276, ABC_SMC6_euk, ATP-binding cassette domain	3e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-05
COG4637	373	COG4637, COG4637, Predicted ATPase [General functi	4e-05
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	6e-04
cd03277	213	cd03277, ABC_SMC5_euk, ATP-binding cassette domain	7e-04
COG3593	581	COG3593, COG3593, Predicted ATP-dependent endonucl	9e-04
pfam13555	60	pfam13555, AAA_29, P-loop containing region of AAA	9e-04
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	0.001
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.002
pfam13175	320	pfam13175, AAA_15, AAA ATPase domain	0.003

>gnl|CDD|213240 cd03273, ABC_SMC2_euk, ATP-binding cassette domain of eukaryotic SMC2 proteins

 Score =  258 bits (661), Expect = 2e-88
 Identities = 103/156 (66%), Positives = 121/156 (77%), Gaps = 1/156 (0%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
           M+IK ++LDGFKSY TR  I+ FD +FNAITGLNG+GKSNILD ICFVLGI  +  VRA+
Sbjct: 1   MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRAS 60

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
            LQ+LIYK GQAG+TKASVT+ FDNSDK   PIG+EN   I + RQI +    +Y+ING 
Sbjct: 61  NLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGH 120

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNM 155
               +RV DLF SV LNVNNPHFLIMQGR+TKVLNM
Sbjct: 121 RAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM 156

The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 251

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score =  185 bits (471), Expect = 6e-55
 Identities = 65/162 (40%), Positives = 90/162 (55%), Gaps = 9/162 (5%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
           MY+K + L GFKS+    EIN F   F AI G NG+GKSNI+D I FVLG Q  K +RA+
Sbjct: 1   MYLKRIELKGFKSFADPTEIN-FSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRAS 59

Query: 60  TLQELIYK--NGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
            + +LI+     +     A V LTFDNSD    P+ YE    I + R+I     + Y IN
Sbjct: 60  KMSDLIFAGSGNRKPANYAEVELTFDNSDNTL-PLEYE---EISVTRRIYRDGESEYYIN 115

Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           G  V  K + DL +   +   +   ++ QG+V +++N KP E
Sbjct: 116 GEKVRLKDIQDLLADSGIGKESY-SIVSQGKVEEIINAKPEE 156

Length = 1163

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score =  172 bits (437), Expect = 2e-50
 Identities = 62/158 (39%), Positives = 89/158 (56%), Gaps = 7/158 (4%)

Query: 2   YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANT 60
           Y+K + ++GFKSY   V +  F   F AI G NG+GKSNILD I FVLG +  K +R+  
Sbjct: 1   YLKRIEIEGFKSYAKTVIL-PFSPGFTAIVGPNGSGKSNILDAILFVLGERSAKSLRSER 59

Query: 61  LQELIYK-NGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
           L +LI+     A V  A VT+TFDN DK+       +D  + I R++    ++ Y ING 
Sbjct: 60  LSDLIHYSKSGAFVNSAEVTITFDNEDKE----LPIDDPEVSIRRRVYRGGDSEYYINGK 115

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157
            V  K V++L  S  ++    +FL+  G+V  +  MKP
Sbjct: 116 DVTKKDVAELLESAGISPEAYNFLVQGGKVEIIAMMKP 153

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score =  125 bits (315), Expect = 7e-34
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 14/163 (8%)

Query: 2   YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANT 60
           YI+ + L+ FKS+G +  I  F + F  I+G NG+GKSNI D I F LG+   K +RA  
Sbjct: 1   YIERIELENFKSFGKKKVIP-FSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAER 59

Query: 61  LQELIYK-NGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISI---PSNTRYMI 116
           L +LI          +A VT+TF N D K         + + + R++ +      + Y +
Sbjct: 60  LSDLISNGKNGQSGNEAYVTVTFKNDDGK-------FPDELEVVRRLKVTDDGKYSYYYL 112

Query: 117 NGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           NG  V    + D  ++  +     +  ++QG VT  ++M P E
Sbjct: 113 NGQRVRLSEIHDFLAAAGIYPEGYNV-VLQGDVTDFISMSPVE 154

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score =  108 bits (272), Expect = 3e-28
 Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 10/162 (6%)

Query: 2   YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANT 60
            +K + L GFKS+     IN FD+    I G NG GKSNI+D I +VLG Q  K +R   
Sbjct: 1   RLKKLELAGFKSFADPTTIN-FDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGK 59

Query: 61  LQELIYKNG---QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
           ++++I+ NG   +  ++ A V L FDNSD       Y     I I R++     + Y IN
Sbjct: 60  MEDVIF-NGSETRKPLSLAEVELVFDNSDGLLPGADYS---EISITRRLYRDGESEYFIN 115

Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           G     K + DLF    L   + + +I QG++++++  KP E
Sbjct: 116 GQPCRLKDIQDLFLDTGLGKRS-YSIIEQGKISEIIEAKPEE 156

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family

 Score = 98.3 bits (246), Expect = 2e-26
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 3  IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTL 61
          +K + L GFKS+  +  I  F     AI G NG+GKSNI+D I +VLG Q  K +R   +
Sbjct: 1  LKKLELKGFKSFADKTTIP-FPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKM 59

Query: 62 QELIYK--NGQAGVTKASVTLTFDNSDKK 88
           ++I+     +     A VTLTFDNSD +
Sbjct: 60 SDVIFAGSETRKPANFAEVTLTFDNSDGR 88

Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197

>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic SMC3 proteins

 Score = 98.1 bits (245), Expect = 6e-26
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 5/154 (3%)

Query: 3   IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ 62
           IK +++ GFKSY  +  I  F  + N + G NG+GKSN    I FVL  +   +R    Q
Sbjct: 1   IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQ 60

Query: 63  ELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVN 122
            L+++     V  A V + FDNSD +  PI       + + R I +  +  Y ++  +V 
Sbjct: 61  ALLHEGSGPSVMSAYVEIIFDNSDNR-FPID---KEEVRLRRTIGLKKD-EYFLDKKNVT 115

Query: 123 PKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMK 156
              V +L  S   + +NP++++ QG++  + NMK
Sbjct: 116 KNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMK 149

The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 243

>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic SMC1 proteins

 Score = 93.0 bits (232), Expect = 7e-24
 Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 14/157 (8%)

Query: 3   IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ 62
           +K + L+ FKSY  R  I  FDR F  I G NG+GKSN++D I FVLG +   +R+  L+
Sbjct: 1   LKRLELENFKSYKGRHVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLK 59

Query: 63  ELIY--KNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
           +LIY  + G+     A VT  ++           ++       R I    ++ Y ING  
Sbjct: 60  DLIYRARVGKPDSNSAYVTAVYE----------DDDGEEKTFRRII-TGGSSSYRINGKV 108

Query: 121 VNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157
           V+ K  ++    +N+ V   +FL+ QG V  + +  P
Sbjct: 109 VSLKEYNEELEKINILVKARNFLVFQGDVESIASKNP 145

The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 247

>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the ATP-binding cassette superfamily

 Score = 88.5 bits (220), Expect = 9e-23
 Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 3  IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ 62
          IK + L  FKSY     +   +  FNAI G NG+GKSNI+D ICFVLG +  ++R  +L 
Sbjct: 1  IKQITLKNFKSYRDETVVGGSNS-FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLL 59

Query: 63 ELIYKNGQAGVTKASVTLTFDNS 85
           L     +AG+  ASV +TFD S
Sbjct: 60 FLAGGGVKAGINSASVEITFDKS 82

The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. Length = 178

>gnl|CDD|213241 cd03274, ABC_SMC4_euk, ATP-binding cassette domain of eukaryotic SMC4 proteins

 Score = 77.7 bits (192), Expect = 3e-18
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 1  MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
          + I  +VL+ FKSY     I  F + F+AI G NG+GKSN++D + FV G +  ++R   
Sbjct: 1  LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKK 60

Query: 61 LQELIYK-NGQAGVTKASVTLTF 82
          L +LI+   G   +   SV + F
Sbjct: 61 LSDLIHNSAGHPNLDSCSVEVHF 83

The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 212

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 1  MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
          M I  + L  F+S+        FD     I G NG GKS+ILD I F L  +  ++ A +
Sbjct: 1  MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAFS 60

Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKK 88
          L +LI      G   ASV L F+ + KK
Sbjct: 61 LDDLIRA----GEKSASVELEFEVNGKK 84

Length = 908

>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN

 Score = 64.5 bits (158), Expect = 4e-13
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 16/113 (14%)

Query: 22  DFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT 81
           DF+     +TG  G GKS +LD +  +LG      RA+   +LI    ++G  KA V   
Sbjct: 18  DFEEGLTVLTGETGAGKSILLDALSLLLGG-----RASA--DLI----RSGAEKAVVEGV 66

Query: 82  FDNSDKKN-----CPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDL 129
           FD SD++        +G E+D+ ++I R+IS    +RY ING SV  K + +L
Sbjct: 67  FDISDEEEAKALLLELGIEDDDDLIIRREISRKGRSRYFINGQSVTLKLLREL 119

RecN ATPase involved in DNA repair; similar to ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 276

>gnl|CDD|222160 pfam13476, AAA_23, AAA domain

 Score = 60.3 bits (146), Expect = 8e-12
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 5   SMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQEL 64
            + +  F S+   +EI DF +    I G NG+GK+ ILD I + L  +  +++ +  + +
Sbjct: 1   KLTIKNFGSFK-DLEI-DFSKGLTLIYGPNGSGKTTILDAIRWALYGKTSRLKKSKGRGI 58

Query: 65  ----IYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVI 102
               I      G  K  V +TF+N+  K      E    +  
Sbjct: 59  VKGDIEIEKDEGKKKTYVEITFENNKGKLKLRLIEESRELTK 100

Length = 204

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 59.3 bits (144), Expect = 9e-12
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 5  SMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQEL 64
           +VL  F SY    ++   +     ITG NG+GKS ILD I   LG              
Sbjct: 1  KIVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGA-------QSATR 53

Query: 65 IYKNGQAGVTKASVTLTF 82
               +AG   A+V+   
Sbjct: 54 RRSGVKAGCIVAAVSAEL 71

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 18/112 (16%)

Query: 22  DFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT 81
           +F++    +TG  G GKS I+D +  +LG      RA+    L+      G  +A V   
Sbjct: 19  EFEKGLTVLTGETGAGKSIIIDALGLLLG-----GRADA--SLVRH----GAKRAEVEAI 67

Query: 82  FDNSDKKNCPI----GYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDL 129
           FD  +          G E+D  +++ R IS    +R  ING  V+   ++ L
Sbjct: 68  FDLDNPPARAWLEENGIEDDEEVILRRVISADGRSRAFINGQPVS---LAQL 116

Length = 557

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 51.8 bits (125), Expect = 9e-09
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 15/110 (13%)

Query: 3   IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVL-GIQVKQVRANT- 60
           I  + +   +S+  R EI +F      I G NG GK+ I++ + + L G      +    
Sbjct: 1   IDKLSIRNIRSFHERSEI-EFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAH 59

Query: 61  LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIG-----YENDNTIVICRQ 105
             +LI +    G  +A V L F+N++ K   I       EN   ++ C Q
Sbjct: 60  DPKLIRE----GEVRAQVKLAFENANGKKYTITRSLAILEN---VIFCHQ 102

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 22/138 (15%)

Query: 18  VEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77
           + +  F+R    +TG  G GKS I+D +  + G   ++  A+ ++         G  +A 
Sbjct: 16  LTVE-FERGLTVLTGETGAGKSMIIDALSLLGG---QRAGASRVRS--------GENRAV 63

Query: 78  VTLTFDNSDKKNC------PIGYENDNTIVIC---RQISIPSNTRYMINGSSVNPKRVSD 128
           V   F      +        I  E ++        R IS    +R  +NG  V+   + +
Sbjct: 64  VEGRFTTESLDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYLNGKPVSASSLLE 123

Query: 129 LFSS-VNLNVNNPHFLIM 145
             S  ++L+  +   L+ 
Sbjct: 124 FTSELLDLHGQHDQQLLF 141

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair [DNA metabolism, DNA replication, recombination, and repair]. Length = 563

>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 23/130 (17%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFV-LGIQVKQVRAN 59
           MY+  + L  F++Y   +++ +     N + G NG GK+N+L+ I  +  G   +  R  
Sbjct: 1   MYLTRLSLTDFRNY-EELDL-ELSPGVNVLVGENGQGKTNLLEAIYLLAPG---RSHRTA 55

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
             +ELI + G      A +    +   ++  P+G           +I      +  ING 
Sbjct: 56  RDKELI-RFGAEA---AVIHGRVEKGGRE-LPLG----------LEIDKKGGRKVRINGE 100

Query: 120 SVNPKRVSDL 129
               +++++L
Sbjct: 101 PQ--RKLAEL 108

Length = 361

>gnl|CDD|224116 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 23/136 (16%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFV-LGIQVKQVRAN 59
           MY+ S++L  F++Y   +++ D     N + G NG GK+N+L+ I  + LG   +  R +
Sbjct: 1   MYLLSLLLRNFRNY-AELDL-DLSPGVNVLVGENGQGKTNLLEAIYLLALG---RSHRTS 55

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
             +ELI    + G  +A ++             G E    + I ++       R  ING+
Sbjct: 56  RDKELI----RTGADEAEISARVQR-------KGREGTLGLQISKK----GRRRVRINGT 100

Query: 120 SVNPKRVSDLFSSVNL 135
                ++++L   +N+
Sbjct: 101 KAR--KLAELAGHLNV 114

Length = 363

>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 1  MYIKSMVLDGFKSYGTRVEINDF----DREFNAITGLNGTGKSNILDGICFVL-GIQVKQ 55
          M    + L  F  +     I DF    +     I G  G GKS ILD I + L G    +
Sbjct: 1  MKPLKLELKNFGPFREEQVI-DFTGLDNNGLFLICGPTGAGKSTILDAITYALYG----K 55

Query: 56 VRANTLQELIYKNGQAGVTKASVTLTFDNSDKK 88
                QE +      G   A V+ TF    KK
Sbjct: 56 TPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKK 88

SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213

>gnl|CDD|233051 TIGR00611, recf, recF protein

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 1  MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
          MY+  + L  F++Y   V++ +     N I G NG GK+N+L+ I + L    +  R + 
Sbjct: 1  MYLSRLELTDFRNY-DAVDL-ELSPGVNVIVGPNGQGKTNLLEAIYY-LA-LGRSHRTSR 56

Query: 61 LQELI 65
           + LI
Sbjct: 57 DKPLI 61

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 365

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 1  MYIKSMVLDGFKSY-GTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN 59
          M I+ + +  F+S+  + VE   FD   N I G NG+GKS+IL+ I  V        +  
Sbjct: 1  MKIEELKIKNFRSHKSSVVE---FDDGINLIIGQNGSGKSSILEAI-LVGLYWGHGSKPK 56

Query: 60 TLQ--ELIYKNGQAGVTKASVTLTFDNSDKK 88
           L+  +      + G +   + L F+ + +K
Sbjct: 57 GLKKDDFT----RIGGSGTEIELKFEKNGRK 83

Length = 880

>gnl|CDD|213209 cd03242, ABC_RecF, ATP-binding cassette domain of RecF

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 21/132 (15%)

Query: 3   IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ 62
           +KS+ L  F++Y   +E+ +F+     + G N  GK+N+L+ I  +     K  R +  +
Sbjct: 1   LKSLELRNFRNY-AELEL-EFEPGVTVLVGENAQGKTNLLEAISLLA--TGKSHRTSRDK 56

Query: 63  ELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVN 122
           ELI    + G  +A ++   +         G E    + I          +  +NG  V 
Sbjct: 57  ELI----RWGAEEAKISAVLERQ-------GGELALELTIRS----GGGRKARLNGIKV- 100

Query: 123 PKRVSDLFSSVN 134
            +R+SDL   +N
Sbjct: 101 -RRLSDLLGVLN 111

RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 270

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 1  MYIKSMVLDGFKSYGTRVEINDFDRE--FNAITGLNGTGKSNILDGICFVL 49
          M    + L  F SY       DF        I G  G GK+ +LD I + L
Sbjct: 1  MKPLRLTLKNFGSY-KGTHTIDFTALGPIFLICGKTGAGKTTLLDAITYAL 50

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|213243 cd03276, ABC_SMC6_euk, ATP-binding cassette domain of eukaryotic SM6 proteins

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 22 DFDREFNAITGLNGTGKSNILDGICFVLGIQVKQV-RANTLQELIYKNGQAGVTKASVTL 80
          +F    N I G NG+GKS IL  +   LG +     R ++L++LI K+G+   + A +T+
Sbjct: 18 EFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLI-KDGE---SSAKITV 73

Query: 81 TFDNS 85
          T  N 
Sbjct: 74 TLKNQ 78

The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 198

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 27/168 (16%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
           M    + L+ FK Y    ++   +     I G+NG+GKS++L+  CF   +   +   +T
Sbjct: 1   MRFDRVRLENFKCYA-DADL-RLEDGVTVIHGVNGSGKSSLLEA-CF-FALYGSKALDDT 56

Query: 61  LQELIYKNGQAGVTKASVTLTF--DNSD---KKNCPIGYENDNTIVICRQISIPSNTRYM 115
           L ++I      G  +A + L F     +   ++   +  +   T   C  +  P  T   
Sbjct: 57  LDDVITI----GAEEAEIELWFEHAGGEYHIERRVRLSGDRATT-AKC-VLETPEGT--- 107

Query: 116 INGSSVNPKRVSDLFSSVNLNVNNPHFL----IMQGRVTKVLNMKPHE 159
           I+G+    + V++L     L ++   F+    + QG V K++N  P +
Sbjct: 108 IDGARDVREEVTEL-----LRMDAEAFVNCAYVRQGEVNKLINATPSD 150

Length = 880

>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction only]

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 1  MYIKSMVLDGFKSYGT-RVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN 59
          M + S+ +  ++S+ +  +EI    R  N I G NG GKSN  D     L +    VR N
Sbjct: 1  MMLVSIKVKNYRSFRSLDLEI----RRVNVIIGANGAGKSNFYD----ALRLLADAVRGN 52

Query: 60 TLQELIYKNG 69
            Q L  + G
Sbjct: 53 LQQALQREGG 62

Length = 373

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL 49
            YG R  +++        E  A+ G NG+GKS +L  I  +L
Sbjct: 7  FRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213244 cd03277, ABC_SMC5_euk, ATP-binding cassette domain of eukaryotic SMC5 proteins

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 3  IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQV-RANTL 61
          I  + L+ F +Y    E        N I G NG+GKS+I+  IC  LG + K + RA  +
Sbjct: 3  IVRIKLENFVTY-DETEFR-PGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKV 60

Query: 62 QELIYKNGQAGVTKASVTLTFDNSDKK 88
           E + K G     + ++ +    +   
Sbjct: 61 GEFV-KRGC---DEGTIEIELYGNPGN 83

The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 213

>gnl|CDD|226121 COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 25/153 (16%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREF----NAITGLNGTGKSNILDGICFVLGIQVKQV 56
           M+++ + +  F+       IN    EF    N + G N +GKS++LD +  +L      +
Sbjct: 1   MHLERVKIKNFRG------INRLSLEFEEGLNVLIGENNSGKSSLLDALRLLLDP-ESDL 53

Query: 57  RANTLQELIYKNGQAGVTKAS-------VTLTFDNSDKKNCPIGYENDNTI--VICRQIS 107
            + TL +  +      +++         + LTF  SD     +          +    + 
Sbjct: 54  YSFTLDDFHF-----PISEFDEKSQHLHIELTFAESDPNERAVVRYRLLEPGALWIPNLD 108

Query: 108 IPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNP 140
                RY + G ++    V  L S +NL  N  
Sbjct: 109 GIEKIRYRLEGEALEDGIVMTLRSFLNLGRNKD 141

Length = 581

>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain

 Score = 35.6 bits (83), Expect = 9e-04
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 22 DFDREFNAITGLNGTGKSNILDGICFVL 49
            D +   +TG +G+GKS ++D I  +L
Sbjct: 18 PIDPKGTLLTGPSGSGKSTLIDAIQTLL 45

Length = 60

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 26/142 (18%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
           M IK + L  F S+    EI +FD   N ITG NG GKS+I+D I F L       R   
Sbjct: 1   MIIKRIRLKNFLSH-DDSEI-EFDTGINIITGKNGAGKSSIVDAIRFAL---FTDKRTEK 55

Query: 61  LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQI-----SIPSNTRYM 115
           ++++I K    G     V L F               +   I R I              
Sbjct: 56  IEDMIKK----GKNNLEVELEF-----------RIGGHVYQIRRSIERRGKGSRREAYIK 100

Query: 116 INGSSVNPKRVSDLFSSVNLNV 137
            +GS +  +   D    +  N+
Sbjct: 101 KDGSIIA-EGFDDTTKYIEKNI 121

Length = 895

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 15/94 (15%)

Query: 1  MYIKSMVLDGFKSYGTRVEINDFDREFNA------ITGLNGTGKSNILDGICFVL-GIQV 53
          M I  + L+ F  Y  R     FD   ++      I GLNG GK+ +LD I   L G + 
Sbjct: 1  MIILQLTLENFGPYRGR---QTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRA 57

Query: 54 K--QVRANTLQELI--YKNGQAGVT-KASVTLTF 82
                  + ++ +    N QAG T  AS+TLTF
Sbjct: 58 LCSGRGNKSYEQYLRGLINRQAGKTNPASITLTF 91

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 3  IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLG 50
          +K + +  FKS     EI+  +   N I G NG+GK+ IL+ +  +  
Sbjct: 1  LKKIKIKNFKSIKNLEEIS-LNEGINVIIGENGSGKTTILEALDNLKE 47

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 320

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.97
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.97
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.96
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.96
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.96
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.95
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.95
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.95
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.95
KOG0933|consensus	1174		99.95
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.94
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.94
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.94
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.94
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.94
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.93
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.93
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.93
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.93
COG4181	228	Predicted ABC-type transport system involved in ly	99.92
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.92
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.92
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.92
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.92
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.92
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.91
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.91
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.91
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.91
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.91
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.91
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.9
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.9
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.9
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.9
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.89
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.89
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.89
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.89
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.89
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.89
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.89
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.89
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.89
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.88
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.88
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.88
COG1123	539	ATPase components of various ABC-type transport sy	99.88
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.88
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.88
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.88
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.88
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.88
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.88
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.88
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.88
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.88
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.88
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.88
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.88
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.88
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.88
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.88
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.88
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.88
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.88
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.88
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.87
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.87
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.87
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.87
PRK10908	222	cell division protein FtsE; Provisional	99.87
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.87
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.87
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.87
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.87
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.87
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.87
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.87
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.87
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.87
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.87
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.87
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.87
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.87
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.87
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.87
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.87
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.87
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.87
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.87
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.86
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.86
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.86
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.86
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.86
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.86
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.86
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.86
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.86
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.86
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.86
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.86
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.86
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.86
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.86
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.86
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.86
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.86
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.86
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.86
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.86
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.86
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.86
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.86
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.86
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.86
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.86
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.85
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.85
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.85
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.85
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.85
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.85
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.85
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.85
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.85
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.85
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.85
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.85
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.85
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.85
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.85
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.84
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.84
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.84
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.84
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.84
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.84
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.84
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.84
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.84
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.84
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.84
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.84
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.84
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.84
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.84
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.84
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.83
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.83
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.83
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.83
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.83
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.83
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.83
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.83
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.83
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.83
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.83
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.83
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.83
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.83
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.83
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.82
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.82
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.82
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.82
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.82
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.82
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.82
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK10938	490	putative molybdenum transport ATP-binding protein	99.82
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.82
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.82
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.82
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.82
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.82
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.82
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.81
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.81
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.81
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.81
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.81
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.81
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.81
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.81
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.81
KOG0996|consensus	1293		99.81
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.81
COG1123	539	ATPase components of various ABC-type transport sy	99.81
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.81
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.8
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.8
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.8
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.8
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.8
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.8
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.8
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.8
KOG0057|consensus	591		99.8
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.8
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.8
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.8
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.8
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.8
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.8
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.8
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.8
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.8
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.79
KOG0058|consensus	716		99.79
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.79
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.79
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.79
KOG0018|consensus	1141		99.79
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.79
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.79
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.79
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.79
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.79
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.79
COG4559	259	ABC-type hemin transport system, ATPase component	99.79
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.79
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.79
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.79
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.79
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.79
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.79
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.79
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.78
KOG0055|consensus	1228		99.78
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.78
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.78
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.78
PRK11147	635	ABC transporter ATPase component; Reviewed	99.78
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.78
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.78
COG4988	559	CydD ABC-type transport system involved in cytochr	99.78
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.78
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.78
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.78
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.77
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.77
COG4172	534	ABC-type uncharacterized transport system, duplica	99.77
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.77
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.77
cd03246	173	ABCC_Protease_Secretion This family represents the	99.77
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.76
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.76
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.76
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.76
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.76
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.76
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.76
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.76
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.75
PLN03211	659	ABC transporter G-25; Provisional	99.75
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.75
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.75
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.75
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.75
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.75
KOG0964|consensus	1200		99.75
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.75
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.75
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.75
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.75
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.74
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.74
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.74
KOG0055|consensus	1228		99.74
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.74
PRK10938	490	putative molybdenum transport ATP-binding protein	99.74
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.73
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.73
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.73
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.73
PLN03232	1495	ABC transporter C family member; Provisional	99.73
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.73
PRK13409	590	putative ATPase RIL; Provisional	99.73
PLN03130	1622	ABC transporter C family member; Provisional	99.73
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.73
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.73
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.72
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.72
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.72
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.72
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.71
COG4172	534	ABC-type uncharacterized transport system, duplica	99.71
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.71
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.71
PLN03073	718	ABC transporter F family; Provisional	99.71
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.71
KOG0056|consensus	790		99.71
PTZ00243	1560	ABC transporter; Provisional	99.7
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.7
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.7
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.7
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.69
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.69
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.69
PRK11147	635	ABC transporter ATPase component; Reviewed	99.69
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.69
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.68
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.68
COG0488	530	Uup ATPase components of ABC transporters with dup	99.68
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.67
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.67
PRK13409	590	putative ATPase RIL; Provisional	99.67
COG4987	573	CydC ABC-type transport system involved in cytochr	99.66
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.66
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.66
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.66
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.66
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.65
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.65
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.64
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.63
PLN03130	1622	ABC transporter C family member; Provisional	99.63
KOG0979|consensus	1072		99.63
PLN03140	1470	ABC transporter G family member; Provisional	99.63
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.62
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.62
PLN03232	1495	ABC transporter C family member; Provisional	99.61
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.59
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.59
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.59
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.58
PLN03140	1470	ABC transporter G family member; Provisional	99.57
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.56
PRK00064	361	recF recombination protein F; Reviewed	99.56
PRK01156	895	chromosome segregation protein; Provisional	99.54
COG0488	530	Uup ATPase components of ABC transporters with dup	99.54
KOG0250|consensus	1074		99.53
KOG0061|consensus	613		99.53
KOG0059|consensus	885		99.5
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	99.5
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.5
PTZ00243	1560	ABC transporter; Provisional	99.49
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.49
PRK02224	880	chromosome segregation protein; Provisional	99.49
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.48
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	99.48
PRK14079	349	recF recombination protein F; Provisional	99.46
KOG0054|consensus	1381		99.46
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.45
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.45
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.45
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.44
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.43
PRK03918	880	chromosome segregation protein; Provisional	99.41
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.41
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.41
PF13555	62	AAA_29: P-loop containing region of AAA domain	99.39
KOG0054|consensus	1381		99.39
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.39
PRK10869	553	recombination and repair protein; Provisional	99.38
TIGR00611	365	recf recF protein. All proteins in this family for	99.38
COG4178	604	ABC-type uncharacterized transport system, permeas	99.37
PHA02562	562	46 endonuclease subunit; Provisional	99.37
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.36
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.26
PLN03073	718	ABC transporter F family; Provisional	99.26
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.23
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.22
KOG0065|consensus	1391		99.21
KOG0060|consensus	659		99.19
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.16
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	99.13
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.07
KOG0064|consensus	728		99.06
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.05
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.02
KOG0927|consensus	614		99.01
KOG0066|consensus	807		98.99
PF11398	373	DUF2813: Protein of unknown function (DUF2813); In	98.98
KOG0062|consensus	582		98.97
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	98.96
PRK04863	1486	mukB cell division protein MukB; Provisional	98.92
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.82
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.82
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.76
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.75
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.72
COG3950	440	Predicted ATP-binding protein involved in virulenc	98.71
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.7
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.69
COG1106	371	Predicted ATPases [General function prediction onl	98.68
KOG0065|consensus	1391		98.67
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.66
PF13175	415	AAA_15: AAA ATPase domain	98.63
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.61
COG4637	373	Predicted ATPase [General function prediction only	98.6
KOG2355|consensus	291		98.58
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.53
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.52
KOG0927|consensus	614		98.52
PRK09825	176	idnK D-gluconate kinase; Provisional	98.49
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.46
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.43
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.41
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.38
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.35
PRK00300	205	gmk guanylate kinase; Provisional	98.33
COG3910	233	Predicted ATPase [General function prediction only	98.33
COG3593	581	Predicted ATP-dependent endonuclease of the OLD fa	98.33
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.3
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.3
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.29
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.29
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.26
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.26
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.23
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.2
PLN02796	347	D-glycerate 3-kinase	98.2
PRK09862	506	putative ATP-dependent protease; Provisional	98.16
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.14
PRK10416	318	signal recognition particle-docking protein FtsY;	98.13
PRK08149	428	ATP synthase SpaL; Validated	98.12
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.11
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.1
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.1
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.09
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.07
PRK05480	209	uridine/cytidine kinase; Provisional	98.06
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.06
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.06
PRK00098	298	GTPase RsgA; Reviewed	98.06
PRK01889	356	GTPase RsgA; Reviewed	98.05
PLN03046	460	D-glycerate 3-kinase; Provisional	98.03
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.03
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.01
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.01
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.01
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.01
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.01
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.0
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.0
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	97.99
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.98
PRK03846	198	adenylylsulfate kinase; Provisional	97.98
PLN02318	656	phosphoribulokinase/uridine kinase	97.97
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.97
PF04310	227	MukB: MukB N-terminal; InterPro: IPR007406 This is	97.96
smart00382	148	AAA ATPases associated with a variety of cellular	97.95
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.94
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.92
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	97.91
PRK07429	327	phosphoribulokinase; Provisional	97.91
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.91
KOG0062|consensus	582		97.9
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.88
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.88
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.87
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	97.86
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.86
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.85

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.6e-36  Score=210.47  Aligned_cols=142  Identities=16%  Similarity=0.253  Sum_probs=116.9

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ |+|++..+|++++     |++++|+|||||||||||++|+++..+++|+|.++| .++.... .....|+++
T Consensus         2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g-~~~~~~~-~~~~~R~~v   79 (240)
T COG1126           2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG-EDVGDKK-DILKLRRKV   79 (240)
T ss_pred             eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC-Eeccchh-hHHHHHHhc
Confidence            3899999 9999999999998     799999999999999999999999999999999998 2221101 112257889


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      ++|||+         |++||++||.+|+..+... .+...+.+.++++.++|+.+||.+   .+|.+||+ |+   +|||
T Consensus        80 GmVFQ~---------fnLFPHlTvleNv~lap~~-v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIAR  149 (240)
T COG1126          80 GMVFQQ---------FNLFPHLTVLENVTLAPVK-VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIAR  149 (240)
T ss_pred             Ceeccc---------ccccccchHHHHHHhhhHH-HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHH
Confidence            999998         6899999999999987531 222234455678889999999986   68999999 43   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+++|+
T Consensus       150 ALaM~P~  156 (240)
T COG1126         150 ALAMDPK  156 (240)
T ss_pred             HHcCCCC
Confidence            9999997

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.6e-34  Score=216.91  Aligned_cols=139  Identities=21%  Similarity=0.268  Sum_probs=117.2

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      ..|+++|+ |.|++..++++++     ||+++|+|||||||||||++|+|+..|++|+|+++| +++...    ....+.
T Consensus         2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g-~~vt~l----~P~~R~   76 (338)
T COG3839           2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG-RDVTDL----PPEKRG   76 (338)
T ss_pred             cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCCC----ChhHCC
Confidence            35999999 9999865678887     799999999999999999999999999999999998 443221    224678


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      |++|||+         |.+||+|||++|+.|+.+  .+...+.+..+++.+..+.++|.+   ++|.+||+ |+   ++|
T Consensus        77 iamVFQ~---------yALyPhmtV~~Niaf~Lk--~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAla  145 (338)
T COG3839          77 IAMVFQN---------YALYPHMTVYENIAFGLK--LRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALA  145 (338)
T ss_pred             EEEEeCC---------ccccCCCcHHHHhhhhhh--hCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHH
Confidence            9999999         689999999999999976  332234556789999999999987   68999999 44   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ||++.+|+
T Consensus       146 RAlVr~P~  153 (338)
T COG3839         146 RALVRKPK  153 (338)
T ss_pred             HHHhcCCC
Confidence            99999996

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-34  Score=217.69  Aligned_cols=142  Identities=18%  Similarity=0.251  Sum_probs=119.2

Q ss_pred             CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514          1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      |+...|+++|+ |.|++..+++++|     ||+++|+|||||||||+|++|+|+..|++|+|.++| +++...    ...
T Consensus         1 ~~~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G-~~i~~l----pp~   75 (352)
T COG3842           1 MPKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDG-EDITDV----PPE   75 (352)
T ss_pred             CCCceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCCC----Chh
Confidence            34457999999 9999999999998     799999999999999999999999999999999998 554321    225


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--  147 (159)
                      ++.|++|||+         |++|||+||.+||.|+.+  .+. ..+.+..+++.++++.++|..   ++|.++|+ |+  
T Consensus        76 kR~ig~VFQ~---------YALFPHltV~~NVafGLk--~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQR  144 (352)
T COG3842          76 KRPIGMVFQS---------YALFPHMTVEENVAFGLK--VRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQR  144 (352)
T ss_pred             hcccceeecC---------cccCCCCcHHHHhhhhhh--hcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHH
Confidence            7889999999         799999999999999976  221 112234578999999999976   78999999 43  


Q ss_pred             -hHhHhhcCCCC
Q psy17514        148 -RVTKVLNMKPH  158 (159)
Q Consensus       148 -~ia~~l~~~p~  158 (159)
                       ++||+|+.+|+
T Consensus       145 VALARAL~~~P~  156 (352)
T COG3842         145 VALARALVPEPK  156 (352)
T ss_pred             HHHHHHhhcCcc
Confidence             99999999995

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=8.4e-32  Score=192.76  Aligned_cols=135  Identities=21%  Similarity=0.284  Sum_probs=114.1

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .++++++ +.|+...+|++++     ||+++|+|||||||||||++|+|+..|++|+|.++| +.+       ......+
T Consensus         3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g-~~v-------~~p~~~~   74 (248)
T COG1116           3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG-RPV-------TGPGPDI   74 (248)
T ss_pred             eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-ccc-------CCCCCCE
Confidence            4899999 9999999999998     799999999999999999999999999999999988 332       1145679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia~  151 (159)
                      +||||++         .++|.+||.+|+.++..  .....+....+++.++|+.+||..   .+|.++|+   |+ +|||
T Consensus        75 ~~vFQ~~---------~LlPW~Tv~~NV~l~l~--~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiAR  143 (248)
T COG1116          75 GYVFQED---------ALLPWLTVLDNVALGLE--LRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIAR  143 (248)
T ss_pred             EEEeccC---------cccchhhHHhhheehhh--ccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHH
Confidence            9999994         78999999999999865  221233334568999999999976   68999999   44 9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       144 AL~~~P~  150 (248)
T COG1116         144 ALATRPK  150 (248)
T ss_pred             HHhcCCC
Confidence            9999996

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=6.4e-32  Score=197.57  Aligned_cols=139  Identities=22%  Similarity=0.309  Sum_probs=115.1

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHH---HHHHhhCCCceeEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ---ELIYKNGQAGVTKA   76 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~   76 (159)
                      |+++|. +.|+...++.+++     +++++|+|||||||||||++|+|++.|++|.|.+++ +   |..+    .....+
T Consensus         3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~-~~l~D~~~----~~~~~R   77 (345)
T COG1118           3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNG-RVLFDVSN----LAVRDR   77 (345)
T ss_pred             eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECC-Eeccchhc----cchhhc
Confidence            689999 9999988888776     799999999999999999999999999999999988 3   3221    122467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      +||+|||+         |.+|++|||.+||.|+.+..-...++.....++.++|+.+.|..   .+|.+||+ |+   ++
T Consensus        78 ~VGfvFQ~---------YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVAL  148 (345)
T COG1118          78 KVGFVFQH---------YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVAL  148 (345)
T ss_pred             ceeEEEec---------hhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHH
Confidence            89999999         68999999999999997633111233345678899999888865   79999999 55   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      ||||+.+|+
T Consensus       149 ARALA~eP~  157 (345)
T COG1118         149 ARALAVEPK  157 (345)
T ss_pred             HHHhhcCCC
Confidence            999999996

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.96  E-value=5.7e-32  Score=193.47  Aligned_cols=139  Identities=18%  Similarity=0.273  Sum_probs=116.5

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ |.|+++.++++++     +++.+++|||||||||+|++|++++.|++|+|+++| +++...+.  -..|++||
T Consensus         2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g-~~i~~~d~--~~LRr~IG   78 (309)
T COG1125           2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDG-EDISDLDP--VELRRKIG   78 (309)
T ss_pred             ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECC-eecccCCH--HHHHHhhh
Confidence            799999 9999999999998     799999999999999999999999999999999998 44432121  22578999


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-----CCCeeEEe-Ch---hHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-----NNPHFLIM-QG---RVT  150 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~l~~-q~---~ia  150 (159)
                      ||.|.         ..+||++||.+||..-..  ....++....+++.++++.++|+.     ++|.+||+ |+   -|+
T Consensus        79 YviQq---------igLFPh~Tv~eNIa~VP~--L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~  147 (309)
T COG1125          79 YVIQQ---------IGLFPHLTVAENIATVPK--LLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVA  147 (309)
T ss_pred             hhhhh---------cccCCCccHHHHHHhhhh--hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHH
Confidence            99998         469999999999987432  333345556789999999999975     68999999 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      |||+++|+
T Consensus       148 RALAadP~  155 (309)
T COG1125         148 RALAADPP  155 (309)
T ss_pred             HHHhcCCC
Confidence            99999996

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.96  E-value=8.4e-31  Score=180.14  Aligned_cols=141  Identities=18%  Similarity=0.257  Sum_probs=117.3

Q ss_pred             EEEeCe-eeecCC-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh-hCCCceeEEE
Q psy17514          6 MVLDGF-KSYGTR-VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK-NGQAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~~~   77 (159)
                      |+++|+ |.|... ++|.++|     +|+..|+|||||||||||+.|++...|+.|.|++++ .++.+. ..+....|++
T Consensus         2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~-~dl~~l~~~~iP~LRR~   80 (223)
T COG2884           2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG-HDLSRLKGREIPFLRRQ   80 (223)
T ss_pred             eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECC-eecccccccccchhhhe
Confidence            789999 999754 4899888     799999999999999999999999999999999998 555432 2334456899


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe--Ch--hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM--QG--RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~--q~--~ia  150 (159)
                      |++|||+         |.+.++.||+||+.++..  ..-.......+++.+.|+.+||..   .-|.+||+  |+  +||
T Consensus        81 IGvVFQD---------~rLL~~~tvyeNVA~pL~--v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA  149 (223)
T COG2884          81 IGVVFQD---------FRLLPDRTVYENVALPLR--VIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA  149 (223)
T ss_pred             eeeEeee---------ccccccchHhhhhhhhhh--ccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH
Confidence            9999999         678999999999999864  322234455789999999999987   46899999  33  999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ||++.+|+
T Consensus       150 RAiV~~P~  157 (223)
T COG2884         150 RAIVNQPA  157 (223)
T ss_pred             HHHccCCC
Confidence            99999996

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=7.8e-31  Score=192.17  Aligned_cols=141  Identities=20%  Similarity=0.301  Sum_probs=116.4

Q ss_pred             EEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC-CCce
Q psy17514          6 MVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG-QAGV   73 (159)
Q Consensus         6 l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~-~~~~   73 (159)
                      |+++++ |.|..     ..+++++|     |++++|||+||||||||+++|+++..|++|++.++| +++...+. .-..
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G-~di~~l~~~~Lr~   80 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDG-QDLTALSEAELRQ   80 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcC-EecccCChHHHHH
Confidence            789999 99976     46888888     799999999999999999999999999999999998 44432111 1122


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--  147 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--  147 (159)
                      .|++|+|+||+         |+++...||++|+.++..  .....+...++++.++|+.+||.+   .+|.+||+ |+  
T Consensus        81 ~R~~IGMIFQh---------FnLLssrTV~~NvA~PLe--iag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQR  149 (339)
T COG1135          81 LRQKIGMIFQH---------FNLLSSRTVFENVAFPLE--LAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQR  149 (339)
T ss_pred             HHhhccEEecc---------ccccccchHHhhhhhhHh--hcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhH
Confidence            57889999999         578888999999999865  222334556789999999999987   68999999 55  


Q ss_pred             -hHhHhhcCCCC
Q psy17514        148 -RVTKVLNMKPH  158 (159)
Q Consensus       148 -~ia~~l~~~p~  158 (159)
                       +|||||+.+|+
T Consensus       150 VaIARALa~~P~  161 (339)
T COG1135         150 VAIARALANNPK  161 (339)
T ss_pred             HHHHHHHhcCCC
Confidence             99999999997

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=2.9e-26  Score=168.57  Aligned_cols=137  Identities=63%  Similarity=1.003  Sum_probs=109.1

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |.+..|+++||++|.+.+++.+++.++++|+||||||||||+++|++++.+. .|+++..+..++++.........+.|+
T Consensus         1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~   80 (251)
T cd03273           1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVT   80 (251)
T ss_pred             CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEE
Confidence            8899999999999998886657889999999999999999999999999886 568888886577654333234577999


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV  137 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  137 (159)
                      ++||+++....|.+..+.+.++|.+++..+....+.++++....+++.++|+.++|..
T Consensus        81 ~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~  138 (251)
T cd03273          81 IVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNV  138 (251)
T ss_pred             EEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCC
Confidence            9999975433333335678899999998876545556666666789999999999963

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.95  E-value=4.7e-30  Score=183.16  Aligned_cols=141  Identities=21%  Similarity=0.304  Sum_probs=108.7

Q ss_pred             EEEeCe-eeecCC----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--CCCce
Q psy17514          6 MVLDGF-KSYGTR----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--GQAGV   73 (159)
Q Consensus         6 l~l~~~-~~~~~~----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~~~~~   73 (159)
                      ++++|+ |.|...    .+|++++     ||+++|+|||||||||||++|.++..|++|.+++.| .++....  .....
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g-~d~~~l~~~~~~~~   80 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING-KDLTKLSEKELAKL   80 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC-EEcCcCCHHHHHHH
Confidence            578999 888643    6788887     799999999999999999999999999999998887 3332111  11223


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-C--
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-Q--  146 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q--  146 (159)
                      ++..|+|+||+         |++.|++|+.||+.++..  +.........+++.++++.+||.+    .+|.+||+ |  
T Consensus        81 R~~~iGfvFQ~---------~nLl~~ltv~ENv~lpl~--~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQ  149 (226)
T COG1136          81 RRKKIGFVFQN---------FNLLPDLTVLENVELPLL--IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQ  149 (226)
T ss_pred             HHHhEEEECcc---------CCCCCCCCHHHHHHhHHH--HcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHH
Confidence            56789999998         689999999999997643  211111134567888999999974    45889999 3  


Q ss_pred             h-hHhHhhcCCCC
Q psy17514        147 G-RVTKVLNMKPH  158 (159)
Q Consensus       147 ~-~ia~~l~~~p~  158 (159)
                      + +|||||+.+|+
T Consensus       150 RVAIARAL~~~P~  162 (226)
T COG1136         150 RVAIARALINNPK  162 (226)
T ss_pred             HHHHHHHHhcCCC
Confidence            3 99999999996

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=5.9e-29  Score=176.68  Aligned_cols=143  Identities=19%  Similarity=0.235  Sum_probs=114.2

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-CceeEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~   77 (159)
                      .|+++++ ++|+++.++++++     |++++|+||||+||||||++|.|++.|++|+|++.| +++...... ....+++
T Consensus         8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G-~~i~~ls~~~~~~ir~r   86 (263)
T COG1127           8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG-EDIPQLSEEELYEIRKR   86 (263)
T ss_pred             eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcC-cchhccCHHHHHHHHhh
Confidence            6899999 9999999999998     799999999999999999999999999999999998 454321111 1134678


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe--Ch--hH
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM--QG--RV  149 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~--q~--~i  149 (159)
                      ++++||..         ++|..+||+||+.++.+.+.. -.++..++.+..-|+.+||..    ..|..||+  ++  ++
T Consensus        87 ~GvlFQ~g---------ALFssltV~eNVafplre~~~-lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL  156 (263)
T COG1127          87 MGVLFQQG---------ALFSSLTVFENVAFPLREHTK-LPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL  156 (263)
T ss_pred             eeEEeecc---------ccccccchhHhhheehHhhcc-CCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence            99999985         799999999999998652222 122233445556688899975    57999998  33  99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |||++.+|+
T Consensus       157 ARAialdPe  165 (263)
T COG1127         157 ARAIALDPE  165 (263)
T ss_pred             HHHHhcCCC
Confidence            999999996

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.95  E-value=3.9e-28  Score=176.43  Aligned_cols=142  Identities=14%  Similarity=0.198  Sum_probs=111.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ ..|+++.+++++|     +++++|+|||||||||||++|+|+++|.+|+|.++| +++.....  ....+.+
T Consensus         2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g-~~i~~~~~--kelAk~i   78 (258)
T COG1120           2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG-KDIASLSP--KELAKKL   78 (258)
T ss_pred             eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC-CchhhcCH--HHHhhhE
Confidence            4799999 9999999999998     799999999999999999999999999999999999 56543222  2246789


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC--EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING--SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      +|++|.+         .....+||.|-+.++...+....+  .+.+.+.+.+.++.+++..   +.-..+|+ |+   .|
T Consensus        79 a~vpQ~~---------~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~i  149 (258)
T COG1120          79 AYVPQSP---------SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLI  149 (258)
T ss_pred             EEeccCC---------CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHH
Confidence            9999985         234468999999988653222222  2333456888899999976   44567777 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      ||||+.+|+
T Consensus       150 ArALaQ~~~  158 (258)
T COG1120         150 ARALAQETP  158 (258)
T ss_pred             HHHHhcCCC
Confidence            999999986

>KOG0933|consensus

Probab=99.95  E-value=4.1e-27  Score=191.48  Aligned_cols=159  Identities=66%  Similarity=1.063  Sum_probs=151.3

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |++..|-+++||+|..++++.++++.+++|+|-||||||++|++||++++.+ -..+|..+++++++...+++..++.|.
T Consensus         1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~GQAGiTkAsVs   80 (1174)
T KOG0933|consen    1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNGQAGITKASVS   80 (1174)
T ss_pred             CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcCcccceeEEEE
Confidence            8889999999999999999999999999999999999999999999999987 357999999999998888888999999


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCCCC
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE  159 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p~~  159 (159)
                      ++|.+.+...-|+||...|+.+|.+.|..++++.|.+||+.+....+.+++..++|...+|++|..||.|..+|.|+|.|
T Consensus        81 VvFdNtdk~~SP~G~E~h~EIsVtRqIv~gG~~KylINGh~a~~~~vq~lF~SVqLNvNNP~FLIMQGrITkVLNMKp~E  160 (1174)
T KOG0933|consen   81 VVFDNTDKARSPLGYEHHDEISVTRQIVVGGTNKYLINGHLAQNSKVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPSE  160 (1174)
T ss_pred             EEecCCCcccCCCCcccCCeeEEEEEEEecCceeEEEcCeeCchhHHHHHHHHhcccCCCCceEEecccchhhhcCCcHH
Confidence            99999988889999999999999999999999999999999999999999999999999999999999999999999976

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=5.1e-29  Score=174.30  Aligned_cols=143  Identities=15%  Similarity=0.194  Sum_probs=109.7

Q ss_pred             EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc-----ccchhhhhHHHHHHhhCCC
Q psy17514          3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ-----VKQVRANTLQELIYKNGQA   71 (159)
Q Consensus         3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~-----~g~i~~~~~~~~~~~~~~~   71 (159)
                      ...++++|+ ..|+++.+|++++     ..+++|||||||||||||++++.+....     .|+|.++| +++....-..
T Consensus         5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g-~ni~~~~~d~   83 (253)
T COG1117           5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG-KNIYDPKVDV   83 (253)
T ss_pred             cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC-eeccCCCCCH
Confidence            346899999 9999999999998     4789999999999999999999998665     48888888 5543321112


Q ss_pred             ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEE
Q psy17514         72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLI  144 (159)
Q Consensus        72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~  144 (159)
                      -..|++|++|||.|         +.|| +|+++|+.++.+..-. .+ ....+.+...|+...|++       +++..||
T Consensus        84 ~~lRr~vGMVFQkP---------nPFp-~SIydNVayG~r~~g~-~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LS  151 (253)
T COG1117          84 VELRRRVGMVFQKP---------NPFP-MSIYDNVAYGLRLHGI-KD-KELDEIVESSLKKAALWDEVKDRLHKSALGLS  151 (253)
T ss_pred             HHHHHHheeeccCC---------CCCC-chHHHHHHHhHHhhcc-ch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCC
Confidence            23578999999997         4667 8999999998552111 11 233466777888888875       4677888


Q ss_pred             e-Ch---hHhHhhcCCCC
Q psy17514        145 M-QG---RVTKVLNMKPH  158 (159)
Q Consensus       145 ~-q~---~ia~~l~~~p~  158 (159)
                      + |+   +|||+|+.+|+
T Consensus       152 GGQQQRLcIARalAv~Pe  169 (253)
T COG1117         152 GGQQQRLCIARALAVKPE  169 (253)
T ss_pred             hhHHHHHHHHHHHhcCCc
Confidence            8 33   99999999996

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.94  E-value=3.5e-28  Score=173.16  Aligned_cols=141  Identities=21%  Similarity=0.277  Sum_probs=114.3

Q ss_pred             EEEEeCe-eeecCCe----eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514          5 SMVLDGF-KSYGTRV----EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~----~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      .|+++|+ +.|+...    +++++|     ||+++|+|+||||||||.++|+|+..|+.|+|.++| +.+.... .....
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G-~~~~~~~-~~~~~   80 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG-KPLAPKK-RAKAF   80 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC-cccCccc-cchhh
Confidence            4899999 9999887    899998     799999999999999999999999999999999998 3332211 11235


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-C--h
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-Q--G  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q--~  147 (159)
                      .+.|.+|||+|...       +.|..||.+.+.-+..    .++....++++.++++.+||..    +.|.+||+ |  +
T Consensus        81 ~~~VQmVFQDp~~S-------LnP~~tv~~~l~Epl~----~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QR  149 (252)
T COG1124          81 YRPVQMVFQDPYSS-------LNPRRTVGRILSEPLR----PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQR  149 (252)
T ss_pred             ccceeEEecCCccc-------cCcchhHHHHHhhhhc----cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHH
Confidence            67899999998654       5666788887766532    3455555677999999999986    78999999 4  3


Q ss_pred             -hHhHhhcCCCC
Q psy17514        148 -RVTKVLNMKPH  158 (159)
Q Consensus       148 -~ia~~l~~~p~  158 (159)
                       +|||||+.+|+
T Consensus       150 iaIARAL~~~Pk  161 (252)
T COG1124         150 IAIARALIPEPK  161 (252)
T ss_pred             HHHHHHhccCCC
Confidence             99999999996

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=1.7e-28  Score=173.57  Aligned_cols=140  Identities=11%  Similarity=0.183  Sum_probs=107.8

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ ..|+..++|.++|     +++++|+|+|||||||||++|+|+.++.+|+|.+.| +|+.. .+.+...++.|
T Consensus         3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G-~dit~-~p~~~r~r~Gi   80 (237)
T COG0410           3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG-EDITG-LPPHERARLGI   80 (237)
T ss_pred             ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECC-eecCC-CCHHHHHhCCe
Confidence            4899999 9999999999998     799999999999999999999999999999999999 66544 23334467889


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc-cc---CCCeeEEe--Ch--hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL-NV---NNPHFLIM--QG--RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~---~~~~~l~~--q~--~ia  150 (159)
                      ++|+|..         .+|+.+||+||+..+..   ....+......++++++.|-- ..   ....++|+  |+  +||
T Consensus        81 ~~VPegR---------~iF~~LTVeENL~~g~~---~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia  148 (237)
T COG0410          81 AYVPEGR---------RIFPRLTVEENLLLGAY---ARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA  148 (237)
T ss_pred             EeCcccc---------cchhhCcHHHHHhhhhh---cccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence            9999874         69999999999998743   222212222225555655542 22   34567777  33  999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      |||+.+|+
T Consensus       149 RALm~~Pk  156 (237)
T COG0410         149 RALMSRPK  156 (237)
T ss_pred             HHHhcCCC
Confidence            99999996

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.5e-28  Score=174.19  Aligned_cols=143  Identities=15%  Similarity=0.221  Sum_probs=112.5

Q ss_pred             EEEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh-CCCceeEE
Q psy17514          5 SMVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN-GQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~~   76 (159)
                      .|+++|+ +.| ++.++|.+++     ||+++|+|||||||||||++|+|+.+|++|++.+.+ .++.... .+....++
T Consensus         3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g-~~i~~~~~k~lr~~r~   81 (258)
T COG3638           3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG-VQITKLKGKELRKLRR   81 (258)
T ss_pred             eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecc-cchhccchHHHHHHHH
Confidence            4899999 999 7889999998     799999999999999999999999999999999988 3433211 11223578


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE-------EECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY-------MINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-  145 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-  145 (159)
                      .++|+||.         +++.+.++|.+|+..+...+.       .+.. +....++.+.|+.+||.+   ....+||+ 
T Consensus        82 ~iGmIfQ~---------~nLv~r~sv~~NVl~grl~~~s~~~slfglfs-k~dk~~Al~aLervgi~~~A~qra~~LSGG  151 (258)
T COG3638          82 DIGMIFQQ---------FNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS-KEDKAQALDALERVGILDKAYQRASTLSGG  151 (258)
T ss_pred             hceeEecc---------CCcccccHHHHHHHhhhcccchHHHHHhCCCC-HHHHHHHHHHHHHcCcHHHHHHHhccCCcc
Confidence            99999998         478999999999987643211       1111 234567788999999976   45678888 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +|||+|+.+|+
T Consensus       152 QQQRVaIARaL~Q~pk  167 (258)
T COG3638         152 QQQRVAIARALVQQPK  167 (258)
T ss_pred             hhHHHHHHHHHhcCCC
Confidence            33   99999999996

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=6.3e-29  Score=177.01  Aligned_cols=143  Identities=17%  Similarity=0.274  Sum_probs=112.8

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++++ |+|++..+++++|     +++++|||||||||||++++|+|+++|++|+|++.| +++.. .+.....+..|
T Consensus         4 lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G-~~it~-l~p~~iar~Gi   81 (250)
T COG0411           4 LLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG-RDITG-LPPHRIARLGI   81 (250)
T ss_pred             eeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECC-cccCC-CCHHHHHhccc
Confidence            4889999 9999999999998     689999999999999999999999999999999998 55533 22233457889


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE------EE----ECCEEeCHHHHHHHHHhcCccc--CCC-eeEEe
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR------YM----INGSSVNPKRVSDLFSSVNLNV--NNP-HFLIM  145 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~------~~----~~~~~~~~~~~~~~l~~~~l~~--~~~-~~l~~  145 (159)
                      +..||++         .+|+++||.||+..+....      +.    ....++..+++.++|+.++|..  +.+ ..|+.
T Consensus        82 ~RTFQ~~---------rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Lsy  152 (250)
T COG0411          82 ARTFQIT---------RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSY  152 (250)
T ss_pred             eeecccc---------cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCCh
Confidence            9999996         6899999999998763211      00    0122344567889999999987  334 44555


Q ss_pred             --Ch--hHhHhhcCCCC
Q psy17514        146 --QG--RVTKVLNMKPH  158 (159)
Q Consensus       146 --q~--~ia~~l~~~p~  158 (159)
                        |+  .|||+|+.+|+
T Consensus       153 G~qR~LEIArALa~~P~  169 (250)
T COG0411         153 GQQRRLEIARALATQPK  169 (250)
T ss_pred             hHhHHHHHHHHHhcCCC
Confidence              44  99999999996

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6e-28  Score=185.02  Aligned_cols=138  Identities=18%  Similarity=0.220  Sum_probs=109.2

Q ss_pred             EEEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ +.| ++..+|++++     +++++|+|||||||||||++|+|+..|++|+|+++| +++..    ....++.
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g-~~i~~----~~~~~r~   77 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGG-RVVNE----LEPADRD   77 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECC-EECCC----CCHHHCC
Confidence            4899999 999 7778888887     789999999999999999999999999999999988 33211    1112467


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      |+|+||++         .+|+++||.+|+.++..  .....+....+++.++++.++|..   ..|.+||+ |+   +||
T Consensus        78 ig~v~Q~~---------~lfp~~tv~eNi~~~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalA  146 (356)
T PRK11650         78 IAMVFQNY---------ALYPHMSVRENMAYGLK--IRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMG  146 (356)
T ss_pred             EEEEeCCc---------cccCCCCHHHHHHhHHh--hcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence            99999985         68999999999988743  110112223467889999999975   57888888 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      |+|+.+|+
T Consensus       147 RAL~~~P~  154 (356)
T PRK11650        147 RAIVREPA  154 (356)
T ss_pred             HHHhcCCC
Confidence            99999996

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6.8e-28  Score=184.30  Aligned_cols=140  Identities=14%  Similarity=0.221  Sum_probs=111.4

Q ss_pred             EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      +..|+++|+ +.|++..++++++     +++++|+|||||||||||++|+|++.|++|+|+++| +++..    ....++
T Consensus         4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g-~~i~~----~~~~~r   78 (351)
T PRK11432          4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDG-EDVTH----RSIQQR   78 (351)
T ss_pred             CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECC-EECCC----CCHHHC
Confidence            346999999 9999888888887     789999999999999999999999999999999988 33211    112346


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      .|+++||++         .+|+++||.+|+.++..  .+...+....+++.++++.++|..   ..|..+|+ |+   ++
T Consensus        79 ~ig~vfQ~~---------~lfp~~tv~eNi~~~l~--~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaL  147 (351)
T PRK11432         79 DICMVFQSY---------ALFPHMSLGENVGYGLK--MLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVAL  147 (351)
T ss_pred             CEEEEeCCc---------ccCCCCCHHHHHHHHHh--HcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence            899999984         68999999999998743  111122233567889999999975   57888888 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      ||+|+.+|+
T Consensus       148 ARaL~~~P~  156 (351)
T PRK11432        148 ARALILKPK  156 (351)
T ss_pred             HHHHHcCCC
Confidence            999999996

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.93  E-value=7.1e-28  Score=184.42  Aligned_cols=139  Identities=19%  Similarity=0.248  Sum_probs=110.5

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      ..|+++|+ +.|++..+|++++     +++++|+|||||||||||++|+|+..|++|+|+++| +++..    ....++.
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g-~~~~~----~~~~~r~   77 (353)
T TIGR03265         3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG-RDITR----LPPQKRD   77 (353)
T ss_pred             cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECC-EECCC----CCHHHCC
Confidence            35899999 9999888888887     789999999999999999999999999999999988 33311    1113467


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      ++|+||++         .+|+++||.+|+.++..  .+...+....+++.++++.++|..   ..|.++|+ |+   ++|
T Consensus        78 ig~v~Q~~---------~lfp~~tv~eNi~~~~~--~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLA  146 (353)
T TIGR03265        78 YGIVFQSY---------ALFPNLTVADNIAYGLK--NRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALA  146 (353)
T ss_pred             EEEEeCCc---------ccCCCCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHH
Confidence            99999984         68999999999988643  110112233567899999999976   57888888 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      |+|+.+|+
T Consensus       147 RaL~~~P~  154 (353)
T TIGR03265       147 RALATSPG  154 (353)
T ss_pred             HHHhcCCC
Confidence            99999996

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.7e-26  Score=167.18  Aligned_cols=141  Identities=17%  Similarity=0.236  Sum_probs=104.9

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      ..|+++|+ ..|++.++|.+++     |++++|+||||||||||+++|.|+++|..|+|.+.+ ++..     ....+.+
T Consensus         3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g-~~~~-----~~~~~~~   76 (254)
T COG1121           3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFG-KPVR-----KRRKRLR   76 (254)
T ss_pred             cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcc-cccc-----ccccCCe
Confidence            35899999 9999657999998     689999999999999999999999999999999887 2211     1112468


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCce---EEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h-
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNT---RYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G-  147 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~-  147 (159)
                      |+||+|...       +...-.+||+|-+.++...   .++..+ +.+.+.+.++|+.+++..   +....||+ |  + 
T Consensus        77 IgYVPQ~~~-------~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV  148 (254)
T COG1121          77 IGYVPQKSS-------VDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRV  148 (254)
T ss_pred             EEEcCcccc-------cCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHH
Confidence            999999641       1111125888888776321   122122 223578999999999986   44567777 3  3 


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      -|||||+.+|+
T Consensus       149 ~lARAL~~~p~  159 (254)
T COG1121         149 LLARALAQNPD  159 (254)
T ss_pred             HHHHHhccCCC
Confidence            99999999996

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=2.5e-26  Score=156.08  Aligned_cols=142  Identities=19%  Similarity=0.240  Sum_probs=114.4

Q ss_pred             EEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--CCCc
Q psy17514          5 SMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--GQAG   72 (159)
Q Consensus         5 ~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~~~~   72 (159)
                      .|+++++ +..++    ..+|.+++     +|.++|+||+||||||||-.++|+..|++|++++.| +++...+  ....
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G-~~L~~ldEd~rA~   84 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLG-QPLHKLDEDARAA   84 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcC-cchhhcCHHHHHH
Confidence            6888998 77754    45777777     799999999999999999999999999999999988 5554322  2223


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe--Ch
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM--QG  147 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~--q~  147 (159)
                      .+.+.|++|||.         |.+.|++|..||+..+..  ..-.+.........++|+.+||..   ++|.++|+  |+
T Consensus        85 ~R~~~vGfVFQS---------F~Lip~ltAlENV~lPle--L~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQ  153 (228)
T COG4181          85 LRARHVGFVFQS---------FHLIPNLTALENVALPLE--LRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQ  153 (228)
T ss_pred             hhccceeEEEEe---------eeccccchhhhhccchhh--hcCCccccHHHHHHHHHHHhCcccccccCccccCchHHH
Confidence            456789999998         678999999999999853  222224445567899999999987   68999999  44


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        +|||+++..|+
T Consensus       154 RVAiARAfa~~P~  166 (228)
T COG4181         154 RVALARAFAGRPD  166 (228)
T ss_pred             HHHHHHHhcCCCC
Confidence              99999999996

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.92  E-value=3.1e-27  Score=181.92  Aligned_cols=138  Identities=20%  Similarity=0.262  Sum_probs=109.2

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..++++++     +++++|+|||||||||||++|+|+++|++|+|.++| +++..    ....++.+
T Consensus        14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g-~~i~~----~~~~~r~i   88 (375)
T PRK09452         14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDG-QDITH----VPAENRHV   88 (375)
T ss_pred             eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC-EECCC----CCHHHCCE
Confidence            5899999 9999888888887     789999999999999999999999999999999988 33211    11134679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +|+||++         .+|+++||.+|+.++..  ..........+++.++++.++|..   ..|.+||+ |+   ++||
T Consensus        89 g~vfQ~~---------~lfp~ltv~eNi~~~l~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLAR  157 (375)
T PRK09452         89 NTVFQSY---------ALFPHMTVFENVAFGLR--MQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIAR  157 (375)
T ss_pred             EEEecCc---------ccCCCCCHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence            9999984         68999999999988643  110111222457888999999975   57888888 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       158 aL~~~P~  164 (375)
T PRK09452        158 AVVNKPK  164 (375)
T ss_pred             HHhcCCC
Confidence            9999996

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.92  E-value=4.4e-27  Score=180.45  Aligned_cols=138  Identities=19%  Similarity=0.267  Sum_probs=109.5

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcc--cchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQV--KQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ +.|++..++++++     +++++|+|||||||||||++|+|++.|++  |+|+++| .++..    ....++
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g-~~~~~----~~~~~r   79 (362)
T TIGR03258         5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIAD-RDLTH----APPHKR   79 (362)
T ss_pred             EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECC-EECCC----CCHHHC
Confidence            5899999 9999888888887     78999999999999999999999999999  9999988 33211    111246


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      .|+++||++         .+|+++||.+|+.++..  ..........+++.++++.++|..   ..|.+||+ |+   ++
T Consensus        80 ~ig~vfQ~~---------~l~p~~tv~enl~~~l~--~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaL  148 (362)
T TIGR03258        80 GLALLFQNY---------ALFPHLKVEDNVAFGLR--AQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAI  148 (362)
T ss_pred             CEEEEECCc---------ccCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHH
Confidence            799999985         68999999999988643  111112223467889999999975   57888888 43   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      ||+|+.+|+
T Consensus       149 ARAL~~~P~  157 (362)
T TIGR03258       149 ARAIAIEPD  157 (362)
T ss_pred             HHHHhcCCC
Confidence            999999996

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=2.5e-28  Score=169.28  Aligned_cols=142  Identities=13%  Similarity=0.184  Sum_probs=112.3

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      ..|.++|+ |+|+.+.++.++|     +|+++|.|||||||||.+.++.|+..|++|.|.+++ .++.. .+-....+..
T Consensus         3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~-~diT~-lPm~~RArlG   80 (243)
T COG1137           3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD-EDITK-LPMHKRARLG   80 (243)
T ss_pred             cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECC-ccccc-CChHHHhhcC
Confidence            35899999 9999999999998     799999999999999999999999999999999998 45433 2333345778


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEE--eCHHHHHHHHHhcCccc--CC-CeeEEe-Ch---h
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS--VNPKRVSDLFSSVNLNV--NN-PHFLIM-QG---R  148 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~--~~-~~~l~~-q~---~  148 (159)
                      |+|.+|.+         ..|..+||++|+..-..  .+..+..  ..+.+++++|+.++|.+  +. ..+||+ ++   .
T Consensus        81 igYLpQE~---------SIFr~LtV~dNi~~vlE--~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~E  149 (243)
T COG1137          81 IGYLPQEA---------SIFRKLTVEDNIMAVLE--IREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVE  149 (243)
T ss_pred             cccccccc---------hHhhcCcHHHHHHHHHh--hhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHH
Confidence            99999996         58889999999976543  3222222  22345789999999987  33 456666 33   9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      |||+|+.+|+
T Consensus       150 IARaLa~~P~  159 (243)
T COG1137         150 IARALAANPK  159 (243)
T ss_pred             HHHHHhcCCC
Confidence            9999999996

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=7.8e-27  Score=179.91  Aligned_cols=138  Identities=17%  Similarity=0.232  Sum_probs=109.2

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..++++++     +++++|+|||||||||||++|+|+..|++|+|+++| +++..    ....++.|
T Consensus        19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g-~~i~~----~~~~~r~i   93 (377)
T PRK11607         19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDG-VDLSH----VPPYQRPI   93 (377)
T ss_pred             eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC-EECCC----CCHHHCCE
Confidence            4899999 9998877888777     789999999999999999999999999999999988 33211    11235679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +|+||++         .+|+++||.+|+.++..  ..........+++.++++.++|..   .+|..||+ |+   +|||
T Consensus        94 g~vfQ~~---------~lfp~ltv~eNi~~~l~--~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLAR  162 (377)
T PRK11607         94 NMMFQSY---------ALFPHMTVEQNIAFGLK--QDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALAR  162 (377)
T ss_pred             EEEeCCC---------ccCCCCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence            9999985         68999999999988643  110112223467889999999975   57888888 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       163 AL~~~P~  169 (377)
T PRK11607        163 SLAKRPK  169 (377)
T ss_pred             HHhcCCC
Confidence            9999996

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.92  E-value=1.7e-26  Score=172.90  Aligned_cols=141  Identities=13%  Similarity=0.204  Sum_probs=111.2

Q ss_pred             EEEEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          3 IKSMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         3 ~~~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      +..++++|+ |.|+ .+.+|+++|     |++++|+|||||||||||++|+|+..|++|+|.+.|. +...   .....+
T Consensus         2 ~~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~-~~~~---~~~~~~   77 (293)
T COG1131           2 IEVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGY-DVVK---EPAKVR   77 (293)
T ss_pred             CceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCE-eCcc---CHHHHH
Confidence            345889999 9999 699999998     6899999999999999999999999999999999883 2211   011246


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R  148 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~  148 (159)
                      +.|+|++|++         .+++++|+.|++.+...  ++........+++.++++.++|..   .....+|+ |+   .
T Consensus        78 ~~igy~~~~~---------~~~~~lT~~e~l~~~~~--l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~  146 (293)
T COG1131          78 RRIGYVPQEP---------SLYPELTVRENLEFFAR--LYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLS  146 (293)
T ss_pred             hheEEEccCC---------CCCccccHHHHHHHHHH--HhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHH
Confidence            7899999996         58899999999988543  222222234578999999999986   23456766 33   9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      ||.+|+.+|+
T Consensus       147 ia~aL~~~P~  156 (293)
T COG1131         147 IALALLHDPE  156 (293)
T ss_pred             HHHHHhcCCC
Confidence            9999999995

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=7.9e-26  Score=163.69  Aligned_cols=142  Identities=21%  Similarity=0.218  Sum_probs=109.5

Q ss_pred             EEEEeCe-eeecCC-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGTR-VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .++++++ ..|.+. .++.+++     +++++|+|+||||||||+++++|++.|+.|.+.++|. ++.. .......+++
T Consensus         3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~-~~~~-~~~~~~~~~~   80 (235)
T COG1122           3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGL-DTSS-EKSLLELRQK   80 (235)
T ss_pred             eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCe-eccc-hhhHHHhhcc
Confidence            4789999 888765 7888887     6899999999999999999999999999999988873 2211 0111225788


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      |++|||+|+.+.+.        -||.+.+.|+.....  -...+..+++.++++.+++..   +.|..||+ |+   +||
T Consensus        81 vG~VfQnpd~q~~~--------~tV~~evafg~~n~g--~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA  150 (235)
T COG1122          81 VGLVFQNPDDQLFG--------PTVEDEVAFGLENLG--LPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIA  150 (235)
T ss_pred             eEEEEECccccccc--------CcHHHHHhhchhhcC--CCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhh
Confidence            99999999765322        388888988765211  122235678999999999975   67899988 44   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      .+|+++|+
T Consensus       151 ~vLa~~P~  158 (235)
T COG1122         151 GVLAMGPE  158 (235)
T ss_pred             HHHHcCCC
Confidence            99999996

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.9e-26  Score=177.68  Aligned_cols=138  Identities=20%  Similarity=0.243  Sum_probs=107.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..+|++++     +++++|+|||||||||||++|+|++.|++|+|.++| +++.. .   ...++.|
T Consensus         3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g-~~i~~-~---~~~~~~i   77 (369)
T PRK11000          3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE-KRMND-V---PPAERGV   77 (369)
T ss_pred             EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC-EECCC-C---CHhHCCE
Confidence            4899999 9998888888887     789999999999999999999999999999999887 33211 0   1123579


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +|+||++         .+++++||.+|+.++..  ..........+++.++++.++|..   ..+..||+ |+   +|||
T Consensus        78 ~~v~Q~~---------~l~~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAr  146 (369)
T PRK11000         78 GMVFQSY---------ALYPHLSVAENMSFGLK--LAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGR  146 (369)
T ss_pred             EEEeCCc---------ccCCCCCHHHHHHhHHh--hcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHH
Confidence            9999985         57888999999987632  110111222457889999999975   56778888 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       147 aL~~~P~  153 (369)
T PRK11000        147 TLVAEPS  153 (369)
T ss_pred             HHhcCCC
Confidence            9999996

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.91  E-value=3.6e-26  Score=175.04  Aligned_cols=139  Identities=18%  Similarity=0.250  Sum_probs=108.3

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++++++     +++++|+|||||||||||++|+|+++|++|+|.++| +++..    ....++.++
T Consensus         3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g-~~i~~----~~~~~r~i~   77 (353)
T PRK10851          3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHG-TDVSR----LHARDRKVG   77 (353)
T ss_pred             EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECCC----CCHHHCCEE
Confidence            789999 9999888888887     789999999999999999999999999999999988 33211    111245799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      |+||++         .+++++||.+|+.++....  +.........+++.++++.++|..   ..|..+|+ |+   +||
T Consensus        78 ~v~Q~~---------~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalA  148 (353)
T PRK10851         78 FVFQHY---------ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALA  148 (353)
T ss_pred             EEecCc---------ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence            999984         6889999999998864310  000111223467889999999975   56788888 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      |+|+.+|+
T Consensus       149 rAL~~~P~  156 (353)
T PRK10851        149 RALAVEPQ  156 (353)
T ss_pred             HHHhcCCC
Confidence            99999996

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.91  E-value=4.1e-26  Score=171.98  Aligned_cols=143  Identities=14%  Similarity=0.172  Sum_probs=108.8

Q ss_pred             CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514          1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      |+...|+++|+ +.|++..+|+++|     |++++|+||||||||||+++|+|++.|++|++++.| .++....   ...
T Consensus         3 ~~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G-~~~~~~~---~~~   78 (306)
T PRK13537          3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG-EPVPSRA---RHA   78 (306)
T ss_pred             CCCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-Eecccch---HHH
Confidence            44557999999 9999888999998     789999999999999999999999999999999988 3332111   123


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---  147 (159)
                      ++.|++++|++         .+++.+|+.+|+.+...  .+........+++.++++.++|..   .....+|+ |+   
T Consensus        79 ~~~ig~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl  147 (306)
T PRK13537         79 RQRVGVVPQFD---------NLDPDFTVRENLLVFGR--YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRL  147 (306)
T ss_pred             HhcEEEEeccC---------cCCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHH
Confidence            57899999985         46778899999876432  111111222456778999999975   34556766 33   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      +||++|+.+|+
T Consensus       148 ~la~aL~~~P~  158 (306)
T PRK13537        148 TLARALVNDPD  158 (306)
T ss_pred             HHHHHHhCCCC
Confidence            99999999996

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.91  E-value=2.2e-26  Score=175.35  Aligned_cols=141  Identities=16%  Similarity=0.256  Sum_probs=107.2

Q ss_pred             EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-Ccee
Q psy17514          6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVT   74 (159)
Q Consensus         6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~   74 (159)
                      |+++|+ +.|++    ..+|+++|     +++++|+||||||||||+++|+|+++|++|+|.++| .++...... ....
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G-~~i~~~~~~~l~~~   80 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDG-QDLTTLSNSELTKA   80 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EECCcCCHHHHHHH
Confidence            789999 99952    46899988     789999999999999999999999999999999988 333211100 0113


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---  147 (159)
                      ++.|+|+||++         .+++..||.+|+.++..  .....+....+++.++++.++|..   .+|.+||+ |+   
T Consensus        81 r~~Ig~v~Q~~---------~l~~~~tv~eni~~~~~--~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV  149 (343)
T TIGR02314        81 RRQIGMIFQHF---------NLLSSRTVFGNVALPLE--LDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRV  149 (343)
T ss_pred             hcCEEEEECCc---------cccccCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence            56899999984         57788899999987532  110112233467889999999975   57888888 43   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      +|||+|+.+|+
T Consensus       150 ~IARAL~~~P~  160 (343)
T TIGR02314       150 AIARALASNPK  160 (343)
T ss_pred             HHHHHHHhCCC
Confidence            99999999996

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.91  E-value=5.1e-27  Score=160.70  Aligned_cols=144  Identities=18%  Similarity=0.308  Sum_probs=112.7

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh-hC-------
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK-NG-------   69 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~-~~-------   69 (159)
                      ..|+++++ |+|++..+|+++|     |+++.|||.+||||||+|+||+.+..|..|.|+.+| .++.-. +.       
T Consensus         5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~g-eei~~k~~~~G~l~~a   83 (256)
T COG4598           5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNG-EEIRLKRDKDGQLKPA   83 (256)
T ss_pred             cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECC-eEEEeeeCCCCCeeeC
Confidence            46899999 9999999999998     799999999999999999999999999999998876 222110 00       


Q ss_pred             ---CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeE
Q psy17514         70 ---QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFL  143 (159)
Q Consensus        70 ---~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l  143 (159)
                         +....|.++++|||+         ++++.++||.+|+.-.... .....+.+..+++..+|..+||..   .+|.++
T Consensus        84 d~~q~~r~Rs~L~mVFQ~---------FNLWsHmtvLeNViEaPvh-VLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~L  153 (256)
T COG4598          84 DKRQLQRLRTRLGMVFQH---------FNLWSHMTVLENVIEAPVH-VLGVSKAEAIERAEKYLAKVGIAEKADAYPAHL  153 (256)
T ss_pred             CHHHHHHHHHHhhHhhhh---------cchhHHHHHHHHHHhcchH-hhcCCHHHHHHHHHHHHHHhCchhhhhcCcccc
Confidence               001235678999998         6899999999998754321 111223344577888999999976   589999


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +|||+|+++|+
T Consensus       154 SGGQQQR~aIARaLameP~  172 (256)
T COG4598         154 SGGQQQRVAIARALAMEPE  172 (256)
T ss_pred             CchHHHHHHHHHHHhcCCc
Confidence            99 33   99999999996

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.90  E-value=2.3e-25  Score=152.63  Aligned_cols=135  Identities=21%  Similarity=0.218  Sum_probs=108.0

Q ss_pred             EEEeCe-eeecCCeeeecCC---CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD---REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT   81 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~---~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v   81 (159)
                      |.++++ .+|++.+--.++.   +++++|+|||||||||||+.|+|+..|.+|+|.++| ++....    ....+=|+++
T Consensus         2 l~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g-~d~t~~----~P~~RPVSml   76 (231)
T COG3840           2 LALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILING-VDHTAS----PPAERPVSML   76 (231)
T ss_pred             ccccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcC-eecCcC----CcccCChhhh
Confidence            677888 8888765222332   799999999999999999999999999999999998 443221    1235669999


Q ss_pred             EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhc
Q psy17514         82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLN  154 (159)
Q Consensus        82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~  154 (159)
                      ||+.         ++|.++||.+|+.++.....+++..  .++++..++..+||..   +-|.++|+ |+   ++||+|+
T Consensus        77 FQEn---------NLFaHLtV~qNigLGl~P~LkL~a~--~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclv  145 (231)
T COG3840          77 FQEN---------NLFAHLTVAQNIGLGLSPGLKLNAE--QREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLV  145 (231)
T ss_pred             hhcc---------ccchhhhhhhhhcccCCcccccCHH--HHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHh
Confidence            9984         7999999999999988766665543  4578899999999976   67999999 44   9999987


Q ss_pred             CC
Q psy17514        155 MK  156 (159)
Q Consensus       155 ~~  156 (159)
                      .+
T Consensus       146 R~  147 (231)
T COG3840         146 RE  147 (231)
T ss_pred             cc
Confidence            54

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.90  E-value=2e-25  Score=170.19  Aligned_cols=143  Identities=18%  Similarity=0.196  Sum_probs=107.6

Q ss_pred             CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514          1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      |.+..|+++|+ +.|++..+|+++|     |++++|+||||||||||+++|+|++.|++|++.++| .++..   .....
T Consensus        37 ~~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G-~~~~~---~~~~~  112 (340)
T PRK13536         37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLG-VPVPA---RARLA  112 (340)
T ss_pred             CCceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECC-EECCc---chHHH
Confidence            34456999999 9999888999988     789999999999999999999999999999999988 33211   11123


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---  147 (159)
                      ++.|++++|++         .+++.+|+.+|+.+...  .+........+++.++++.++|..   ..+..+|+ |+   
T Consensus       113 ~~~ig~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv  181 (340)
T PRK13536        113 RARIGVVPQFD---------NLDLEFTVRENLLVFGR--YFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRL  181 (340)
T ss_pred             hccEEEEeCCc---------cCCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHH
Confidence            56799999985         46677899999875322  111111122345678899999975   44567777 33   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      +||++|+.+|+
T Consensus       182 ~lA~aL~~~P~  192 (340)
T PRK13536        182 TLARALINDPQ  192 (340)
T ss_pred             HHHHHHhcCCC
Confidence            99999999996

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=3e-25  Score=153.73  Aligned_cols=136  Identities=15%  Similarity=0.171  Sum_probs=108.9

Q ss_pred             EEEEEeCe-eeecCCe--eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          4 KSMVLDGF-KSYGTRV--EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~--~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .++.++++ .+|.++.  ++.++|     +++++++|||||||||||+.++|+..|+.|+|..++ +.+   .    ...
T Consensus         2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~-r~i---~----gPg   73 (259)
T COG4525           2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG-RRI---E----GPG   73 (259)
T ss_pred             ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECC-Eec---c----CCC
Confidence            45788999 9998876  788887     799999999999999999999999999999998877 221   1    134


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-h
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-R  148 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~  148 (159)
                      +.-++|||++         .++|.+++.+|+.++..  .+--.+....+.+.+++..+||..   +++.++|+   |+ -
T Consensus        74 aergvVFQ~~---------~LlPWl~~~dNvafgL~--l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvG  142 (259)
T COG4525          74 AERGVVFQNE---------ALLPWLNVIDNVAFGLQ--LRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVG  142 (259)
T ss_pred             ccceeEeccC---------ccchhhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHH
Confidence            5568999995         68899999999999865  332233334556788999999976   56788888   33 9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      |||||+.+|+
T Consensus       143 iARALa~eP~  152 (259)
T COG4525         143 IARALAVEPQ  152 (259)
T ss_pred             HHHHhhcCcc
Confidence            9999999996

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=3.4e-25  Score=163.00  Aligned_cols=122  Identities=14%  Similarity=0.202  Sum_probs=100.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--CCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVI  102 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv  102 (159)
                      ||+++|+|-||||||||+++|+++..|++|+|.++| +++..-+  .-...+++++++|||+         |.++|+.||
T Consensus        54 GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g-~di~~~~~~~Lr~~Rr~~~sMVFQ~---------FaLlPhrtV  123 (386)
T COG4175          54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDG-KDIAKLSAAELRELRRKKISMVFQS---------FALLPHRTV  123 (386)
T ss_pred             CeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECC-cchhcCCHHHHHHHHhhhhhhhhhh---------hccccchhH
Confidence            689999999999999999999999999999999998 4553211  1123357789999998         689999999


Q ss_pred             EEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHhHhhcCCCC
Q psy17514        103 CRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVTKVLNMKPH  158 (159)
Q Consensus       103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia~~l~~~p~  158 (159)
                      .+|+.|+..  ...-.+.+.++++.++++.+||..   .+|.+||+   |+ -+||||+.+|+
T Consensus       124 l~Nv~fGLe--v~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~  184 (386)
T COG4175         124 LENVAFGLE--VQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPD  184 (386)
T ss_pred             hhhhhccee--ecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCC
Confidence            999999864  333334455678899999999976   68999999   33 99999999996

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.89  E-value=6e-25  Score=170.36  Aligned_cols=142  Identities=11%  Similarity=0.135  Sum_probs=106.5

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|+++.+|++++     |++++|+|||||||||||++|+|+++|++|+|++.| +++.. .. ....++.+
T Consensus         3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G-~~i~~-~~-~~~~~~~i   79 (402)
T PRK09536          3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAG-DDVEA-LS-ARAASRRV   79 (402)
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECC-EEcCc-CC-HHHHhcce
Confidence            4899999 9999988999988     789999999999999999999999999999999988 33211 00 11135679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE-EECC-EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY-MING-SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      ++++|++         .++..+|+.+|+.++...+. .... .....+++.++++.+++..   ..+..+|+ |+   .|
T Consensus        80 g~v~q~~---------~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~I  150 (402)
T PRK09536         80 ASVPQDT---------SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLL  150 (402)
T ss_pred             EEEccCC---------CCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence            9999985         35566899998877532110 1111 1223467889999999975   44667777 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      ||+|+.+|+
T Consensus       151 ArAL~~~P~  159 (402)
T PRK09536        151 ARALAQATP  159 (402)
T ss_pred             HHHHHcCCC
Confidence            999999996

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.89  E-value=4.4e-25  Score=159.06  Aligned_cols=141  Identities=20%  Similarity=0.278  Sum_probs=103.0

Q ss_pred             EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--Cce
Q psy17514          6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--AGV   73 (159)
Q Consensus         6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~~~   73 (159)
                      |+++|+ +.|++    ..++.+++     +++++|+||||||||||+++|+|+++|++|+|.++| .++......  ...
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g-~~~~~~~~~~~~~~   79 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDG-TDISKLSEKELAAF   79 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECC-EehhhcchhHHHHH
Confidence            468899 89976    67888887     689999999999999999999999999999999887 333211100  011


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--  147 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--  147 (159)
                      .++.+++++|++         .+++.+|+.+|+.++..  +.........+++.++++.++|..   ..+..+|+ |+  
T Consensus        80 ~~~~i~~~~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  148 (218)
T cd03255          80 RRRHIGFVFQSF---------NLLPDLTALENVELPLL--LAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQR  148 (218)
T ss_pred             HhhcEEEEeecc---------ccCCCCcHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHH
Confidence            245799999985         46677899999876532  110011122356788999999975   45677877 33  


Q ss_pred             -hHhHhhcCCCC
Q psy17514        148 -RVTKVLNMKPH  158 (159)
Q Consensus       148 -~ia~~l~~~p~  158 (159)
                       ++|++++.+|+
T Consensus       149 v~la~al~~~p~  160 (218)
T cd03255         149 VAIARALANDPK  160 (218)
T ss_pred             HHHHHHHccCCC
Confidence             99999999986

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.89  E-value=1.2e-24  Score=158.96  Aligned_cols=138  Identities=17%  Similarity=0.232  Sum_probs=103.0

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++.+++     +++++|+||||||||||+++|+|+++|++|+|+++| +++.. .   ...++.++
T Consensus         3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~---~~~~~~i~   77 (239)
T cd03296           3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGG-EDATD-V---PVQERNVG   77 (239)
T ss_pred             EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECCc-C---CccccceE
Confidence            789999 9998888899888     789999999999999999999999999999999987 33211 0   11245799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC---CEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN---GSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      +++|++         .+++.+|+.+|+.++... ....   ......+++.++++.++|..   ..+..+|+ |+   +|
T Consensus        78 ~v~q~~---------~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l  147 (239)
T cd03296          78 FVFQHY---------ALFRHMTVFDNVAFGLRV-KPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVAL  147 (239)
T ss_pred             EEecCC---------cccCCCCHHHHHhhhhhh-ccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHH
Confidence            999985         356677899998765320 1000   11112346778899999964   45677777 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |++++.+|+
T Consensus       148 a~al~~~p~  156 (239)
T cd03296         148 ARALAVEPK  156 (239)
T ss_pred             HHHHhcCCC
Confidence            999999986

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.89  E-value=5e-25  Score=158.62  Aligned_cols=141  Identities=18%  Similarity=0.260  Sum_probs=103.5

Q ss_pred             EEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC-ceeEE
Q psy17514          6 MVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA-GVTKA   76 (159)
Q Consensus         6 l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~~   76 (159)
                      |+++|+ +.|++  +.++++++     +++++|+||||||||||+++|+|+++|++|+|.++| .++....... ...++
T Consensus         2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNG-QDLTRLRGREIPFLRR   80 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EehhhcChhHHHHHHH
Confidence            789999 99964  46888887     789999999999999999999999999999999987 3332111100 11245


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      .+++++|++         .+++.+|+.+|+.++..  ..........+++.++++.++|..   ..+..+|+ |+   ++
T Consensus        81 ~i~~~~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  149 (216)
T TIGR00960        81 HIGMVFQDH---------RLLSDRTVYDNVAFPLR--IIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAI  149 (216)
T ss_pred             hceEEecCc---------cccccccHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence            799999985         46677899999876422  110011123457888999999965   45677877 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |++++.+|+
T Consensus       150 aral~~~p~  158 (216)
T TIGR00960       150 ARAIVHKPP  158 (216)
T ss_pred             HHHHhcCCC
Confidence            999999996

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.89  E-value=4.4e-25  Score=160.78  Aligned_cols=142  Identities=20%  Similarity=0.248  Sum_probs=103.2

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-CceeEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~i   78 (159)
                      |+++|+ +.|++..++++++     |++++|+||||||||||+++|+|+++|++|+|.++| .++...... ....++.|
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~~~~~~~~~~~~~~i   79 (235)
T cd03261           1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG-EDISGLSEAELYRLRRRM   79 (235)
T ss_pred             CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccccChhhHHHHhcce
Confidence            468899 8998888888887     789999999999999999999999999999999887 332110000 01135679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      ++++|++         .+++.+|+.+|+.++... +.........+++.++++.++|..   ..+..+|+ |+   +||+
T Consensus        80 ~~v~q~~---------~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~  149 (235)
T cd03261          80 GMLFQSG---------ALFDSLTVFENVAFPLRE-HTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALAR  149 (235)
T ss_pred             EEEccCc---------ccCCCCcHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence            9999985         466778999998764220 100011122356788899999965   45677877 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       150 al~~~p~  156 (235)
T cd03261         150 ALALDPE  156 (235)
T ss_pred             HHhcCCC
Confidence            9999986

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.89  E-value=5.9e-25  Score=158.67  Aligned_cols=138  Identities=14%  Similarity=0.226  Sum_probs=102.8

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++++++     +++++|+||||||||||+++|+|+++|++|+|.+++ .++..  . ....++.++
T Consensus         1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~--~-~~~~~~~i~   76 (220)
T cd03265           1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAG-HDVVR--E-PREVRRRIG   76 (220)
T ss_pred             CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EecCc--C-hHHHhhcEE
Confidence            478999 9998888888888     789999999999999999999999999999999887 22211  1 011245799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |+   ++|++
T Consensus        77 ~~~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~a  145 (220)
T cd03265          77 IVFQDL---------SVDDELTGWENLYIHAR--LYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARS  145 (220)
T ss_pred             EecCCc---------cccccCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHH
Confidence            999985         35667789888876422  110011123456788999999975   45677777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       146 l~~~p~  151 (220)
T cd03265         146 LVHRPE  151 (220)
T ss_pred             HhcCCC
Confidence            999986

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.89  E-value=5.5e-25  Score=158.10  Aligned_cols=137  Identities=20%  Similarity=0.289  Sum_probs=101.9

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|+++.++++++     +++++|+||||||||||+++|+|+++|++|+|.+++ .++.. .   ...++.++
T Consensus         1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~~-~---~~~~~~i~   75 (213)
T cd03259           1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG-RDVTG-V---PPERRNIG   75 (213)
T ss_pred             CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EEcCc-C---chhhccEE
Confidence            468899 9998878888888     689999999999999999999999999999999887 33211 1   11245799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |+   +||++
T Consensus        76 ~v~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~a  144 (213)
T cd03259          76 MVFQDY---------ALFPHLTVAENIAFGLK--LRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARA  144 (213)
T ss_pred             EEcCch---------hhccCCcHHHHHHhHHH--HcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence            999985         36667789998876421  110011122356788999999975   45677777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       145 l~~~p~  150 (213)
T cd03259         145 LAREPS  150 (213)
T ss_pred             HhcCCC
Confidence            999986

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.89  E-value=2.5e-25  Score=154.60  Aligned_cols=138  Identities=17%  Similarity=0.254  Sum_probs=108.0

Q ss_pred             EEEeCe-eeecCCe-eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGF-KSYGTRV-EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~~~~~-~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      |++.++ |+|++.+ ++.+++     |++++|.|||||||||+|++|+.++.|++|.+.++|. +..+. +  ...+++|
T Consensus         2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~-d~~~~-p--~~vrr~I   77 (245)
T COG4555           2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV-DTVRD-P--SFVRRKI   77 (245)
T ss_pred             eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeec-ccccC-h--HHHhhhc
Confidence            789999 9999876 788888     6899999999999999999999999999999999984 43331 1  2357889


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia~  151 (159)
                      +++|..         ..+|..+|++||+.+.+.- +.. +....+++..++.+.++|..   .....+|-   |+ .|||
T Consensus        78 GVl~~e---------~glY~RlT~rEnl~~Fa~L-~~l-~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iAR  146 (245)
T COG4555          78 GVLFGE---------RGLYARLTARENLKYFARL-NGL-SRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIAR  146 (245)
T ss_pred             ceecCC---------cChhhhhhHHHHHHHHHHH-hhh-hhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHH
Confidence            999843         3588899999999875431 112 22334678899999999976   33445555   44 9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      ||+.+|.
T Consensus       147 Alvh~P~  153 (245)
T COG4555         147 ALVHDPS  153 (245)
T ss_pred             HHhcCCC
Confidence            9999996

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.9e-24  Score=169.04  Aligned_cols=143  Identities=15%  Similarity=0.282  Sum_probs=110.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ |+|+...+|++++     ||+++|+|+||||||||+++|+|.++|++|+|.++| +.+.. ..........|
T Consensus         8 ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G-~~~~~-~sp~~A~~~GI   85 (500)
T COG1129           8 LLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG-KPVAF-SSPRDALAAGI   85 (500)
T ss_pred             eeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECC-EEccC-CCHHHHHhCCc
Confidence            6899999 9999999999998     799999999999999999999999999999999998 33321 11222346789


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEECCEEeCHHHHHHHHHhcCccc--CCC-eeEEe-Ch---hH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMINGSSVNPKRVSDLFSSVNLNV--NNP-HFLIM-QG---RV  149 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~--~~~-~~l~~-q~---~i  149 (159)
                      ..|+|+.         ++.|++||.+|+.++....  +.+-+.+...++..++|+.+++..  +.+ ..|+. |+   +|
T Consensus        86 ~~V~QEl---------~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI  156 (500)
T COG1129          86 ATVHQEL---------SLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI  156 (500)
T ss_pred             EEEeech---------hccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence            9999994         7899999999998875421  122233445677889999999853  223 23333 43   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |||+..+++
T Consensus       157 ArAl~~~ar  165 (500)
T COG1129         157 ARALSFDAR  165 (500)
T ss_pred             HHHHhcCCC
Confidence            999988774

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.88  E-value=4.6e-24  Score=164.68  Aligned_cols=144  Identities=17%  Similarity=0.231  Sum_probs=111.6

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      ..++++++ |.|++..+++++|     +|+.+|+|+||||||||+++|+|++.|++|+|+++| +.+.. ..+....+..
T Consensus         3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G-~~v~~-~sP~dA~~~G   80 (501)
T COG3845           3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG-KEVRI-KSPRDAIRLG   80 (501)
T ss_pred             ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECC-EEecc-CCHHHHHHcC
Confidence            35899999 9999999999888     799999999999999999999999999999999998 44322 2233345788


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-EEECCEEeCHHHHHHHHHhcCcccC--C-CeeEEe---Ch-hH
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-YMINGSSVNPKRVSDLFSSVNLNVN--N-PHFLIM---QG-RV  149 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~--~-~~~l~~---q~-~i  149 (159)
                      |+||+|.         |.++|.+||.||+.++.... ...-+.....+++.++.+.+||..+  . -..++-   |+ .|
T Consensus        81 IGMVhQH---------F~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI  151 (501)
T COG3845          81 IGMVHQH---------FMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI  151 (501)
T ss_pred             CcEEeec---------cccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence            9999998         57899999999999986532 1122334456788899999999763  2 223322   33 88


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      -++|..+|+
T Consensus       152 lKaLyr~a~  160 (501)
T COG3845         152 LKALYRGAR  160 (501)
T ss_pred             HHHHhcCCC
Confidence            888888775

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=5.9e-25  Score=168.01  Aligned_cols=141  Identities=18%  Similarity=0.265  Sum_probs=104.5

Q ss_pred             EEEeCe-eeec----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-Ccee
Q psy17514          6 MVLDGF-KSYG----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVT   74 (159)
Q Consensus         6 l~l~~~-~~~~----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~   74 (159)
                      |+++|+ ++|+    +..+|.+++     |++++|+||||||||||+++|+|+++|++|+|.++| .++...... ....
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g-~~i~~~~~~~~~~~   80 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDG-QDLTALSEKELRKA   80 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC-EECCcCCHHHHHHH
Confidence            789999 9997    357888887     789999999999999999999999999999999987 332110000 0012


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---  147 (159)
                      ++.|+++||++         .+++.+|+.+|+.++..  +.........+++.++++.++|..   ..+..+|+ |+   
T Consensus        81 ~~~ig~v~q~~---------~l~~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv  149 (343)
T PRK11153         81 RRQIGMIFQHF---------NLLSSRTVFDNVALPLE--LAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRV  149 (343)
T ss_pred             hcCEEEEeCCC---------ccCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence            46799999985         46777899999977532  110111122356788999999975   45778887 43   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      +||++|+.+|+
T Consensus       150 ~lAraL~~~p~  160 (343)
T PRK11153        150 AIARALASNPK  160 (343)
T ss_pred             HHHHHHHcCCC
Confidence            99999999996

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.88  E-value=3.5e-25  Score=169.76  Aligned_cols=135  Identities=19%  Similarity=0.252  Sum_probs=101.8

Q ss_pred             eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC--ceeEEEEEEEEEc
Q psy17514         12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA--GVTKASVTLTFDN   84 (159)
Q Consensus        12 ~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~~~i~~v~q~   84 (159)
                      |.|+++.++++++     |++++|+|||||||||||++|+|+.+|++|+|.++| +++.......  ...++.++|+||.
T Consensus         1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G-~~i~~~~~~~~~~~rr~~i~~v~Q~   79 (363)
T TIGR01186         1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDG-ENIMKQSPVELREVRRKKIGMVFQQ   79 (363)
T ss_pred             CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECC-EECCcCCHHHHHHHHhCcEEEEECC
Confidence            4577777888887     799999999999999999999999999999999988 3321100000  0015689999998


Q ss_pred             CCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCC
Q psy17514         85 SDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKP  157 (159)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p  157 (159)
                      +         .+++++||.+|+.++..  +....+....+++.++++.++|..   .+|.+||+ |+   +|||+|+.+|
T Consensus        80 ~---------~l~~~~TV~eNi~~~~~--~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p  148 (363)
T TIGR01186        80 F---------ALFPHMTILQNTSLGPE--LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEP  148 (363)
T ss_pred             C---------cCCCCCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            5         58888999999987532  211112223467889999999975   57888888 33   9999999999


Q ss_pred             C
Q psy17514        158 H  158 (159)
Q Consensus       158 ~  158 (159)
                      +
T Consensus       149 ~  149 (363)
T TIGR01186       149 D  149 (363)
T ss_pred             C
Confidence            6

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.88  E-value=4.1e-24  Score=168.23  Aligned_cols=145  Identities=19%  Similarity=0.278  Sum_probs=110.6

Q ss_pred             EEEEeCe-eeecC-----------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh
Q psy17514          5 SMVLDGF-KSYGT-----------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK   67 (159)
Q Consensus         5 ~l~l~~~-~~~~~-----------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~   67 (159)
                      .|+++|+ +.|..           ..+++++|     ||+++|+|+||||||||.++|.|+..|++|.+.+.| .+.--.
T Consensus       280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g-~~~~~~  358 (539)
T COG1123         280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDG-QDLDLT  358 (539)
T ss_pred             eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeC-cccccc
Confidence            4789999 88873           24677887     799999999999999999999999999999999988 332111


Q ss_pred             hCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeE
Q psy17514         68 NGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFL  143 (159)
Q Consensus        68 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l  143 (159)
                      .......++.+.++||+|..       .++|.+||.+++..+..-..... .....+++.++++.++|..    ++|.++
T Consensus       359 ~~~~~~~r~~~QmvFQdp~~-------SLnPr~tV~~~i~epL~~~~~~~-~~~~~~rv~~ll~~VgL~~~~l~ryP~el  430 (539)
T COG1123         359 GGELRRLRRRIQMVFQDPYS-------SLNPRMTVGDILAEPLRIHGGGS-GAERRARVAELLELVGLPPEFLDRYPHEL  430 (539)
T ss_pred             cchhhhhhhheEEEEeCccc-------ccCccccHHHHHHhHHhhhcccc-hHHHHHHHHHHHHHcCCCHHHHhcCchhc
Confidence            11122246789999999863       57888999998877643111111 2233457999999999976    689999


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +|||||+.+|+
T Consensus       431 SGGQrQRvaIARALa~~P~  449 (539)
T COG1123         431 SGGQRQRVAIARALALEPK  449 (539)
T ss_pred             CcchhHHHHHHHHHhcCCC
Confidence            99 54   99999999996

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=2.3e-23  Score=151.26  Aligned_cols=131  Identities=15%  Similarity=0.166  Sum_probs=100.2

Q ss_pred             Ce-eeecCCeeeecCC--C-CeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCceeEEEEEEEEE
Q psy17514         10 GF-KSYGTRVEINDFD--R-EFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAGVTKASVTLTFD   83 (159)
Q Consensus        10 ~~-~~~~~~~~l~~~~--~-~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~i~~v~q   83 (159)
                      |+ +.+++..+=.++.  + ++++|.|+||||||||+++|+|+..|+.|.|..+|. -+....+  .-...+++|+||||
T Consensus         5 ~~~~~lG~~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr-~L~Ds~k~i~lp~~~RriGYVFQ   83 (352)
T COG4148           5 NFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGR-VLVDAEKGIFLPPEKRRIGYVFQ   83 (352)
T ss_pred             ehhhhcCceEEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCE-EeecccCCcccChhhheeeeEee
Confidence            45 5566654222222  3 899999999999999999999999999999988872 1111010  01224688999999


Q ss_pred             cCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHhHhhcCC
Q psy17514         84 NSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVTKVLNMK  156 (159)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia~~l~~~  156 (159)
                      +.         .+||++||+.|+.++.+        ......++.+.+.+||.+   ++|..||+   |+ +|+|||..+
T Consensus        84 DA---------RLFpH~tVrgNL~YG~~--------~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~  146 (352)
T COG4148          84 DA---------RLFPHYTVRGNLRYGMW--------KSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA  146 (352)
T ss_pred             cc---------ccccceEEecchhhhhc--------ccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC
Confidence            94         79999999999999854        114567888999999987   78999999   55 999999999


Q ss_pred             CC
Q psy17514        157 PH  158 (159)
Q Consensus       157 p~  158 (159)
                      |+
T Consensus       147 P~  148 (352)
T COG4148         147 PE  148 (352)
T ss_pred             CC
Confidence            96

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.88  E-value=1.5e-24  Score=157.65  Aligned_cols=140  Identities=13%  Similarity=0.177  Sum_probs=102.3

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|+++.++.+++     +++++|+|||||||||||++|+|+++|++|++.++| .++.. .......+..++
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i~   78 (232)
T cd03218           1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG-QDITK-LPMHKRARLGIG   78 (232)
T ss_pred             CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-Eeccc-CCHhHHHhccEE
Confidence            478899 9998888889887     689999999999999999999999999999999887 33211 110111235699


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.+...  ..........+++.++++.+++..   ..+..+|+ |+   ++|++
T Consensus        79 ~~~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a  147 (232)
T cd03218          79 YLPQEA---------SIFRKLTVEENILAVLE--IRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARA  147 (232)
T ss_pred             EecCCc---------cccccCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence            999985         46677899998876421  110111122346778999999975   45667777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       148 l~~~p~  153 (232)
T cd03218         148 LATNPK  153 (232)
T ss_pred             HhcCCC
Confidence            999986

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.88  E-value=2.1e-24  Score=162.66  Aligned_cols=139  Identities=18%  Similarity=0.236  Sum_probs=103.6

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..+|++++     |++++|+|||||||||||++|+|++.|++|+++++| .++..   .....++.+
T Consensus         4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~---~~~~~~~~i   79 (303)
T TIGR01288         4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLG-EPVPS---RARLARVAI   79 (303)
T ss_pred             EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECcc---cHHHHhhcE
Confidence            4899999 9998888899888     789999999999999999999999999999999887 33211   011135679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      ++++|++         .+++.+|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |+   +||+
T Consensus        80 ~~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~  148 (303)
T TIGR01288        80 GVVPQFD---------NLDPEFTVRENLLVFGR--YFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLAR  148 (303)
T ss_pred             EEEeccc---------cCCcCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHH
Confidence            9999985         46667899999875321  110111112345678899999975   45667777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       149 al~~~p~  155 (303)
T TIGR01288       149 ALINDPQ  155 (303)
T ss_pred             HHhcCCC
Confidence            9999996

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.88  E-value=1.8e-24  Score=155.33  Aligned_cols=137  Identities=15%  Similarity=0.230  Sum_probs=101.7

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++++++     +++++|+||||||||||+++|+|+++|++|++.+++ .++.. ..   ..+..++
T Consensus         1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g-~~~~~-~~---~~~~~i~   75 (213)
T cd03301           1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG-RDVTD-LP---PKDRDIA   75 (213)
T ss_pred             CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECCc-CC---cccceEE
Confidence            468899 8898878888887     789999999999999999999999999999999887 33211 11   1235799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++..|+.+|+.++..  ..........+++.++++.+++..   ..+..+|+ |+   ++|++
T Consensus        76 ~~~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~lara  144 (213)
T cd03301          76 MVFQNY---------ALYPHMTVYDNIAFGLK--LRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRA  144 (213)
T ss_pred             EEecCh---------hhccCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHH
Confidence            999985         35666788888876421  110111222456788899999964   45677777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       145 l~~~p~  150 (213)
T cd03301         145 IVREPK  150 (213)
T ss_pred             HhcCCC
Confidence            999986

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.88  E-value=9.6e-25  Score=147.36  Aligned_cols=144  Identities=17%  Similarity=0.224  Sum_probs=109.0

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHH-HHHHhh--CCCceeE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ-ELIYKN--GQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~-~~~~~~--~~~~~~~   75 (159)
                      .|+++|+ +.|+..++|.|++     |+..+++||+|||||||++.+..+.-|++|++.+.+.. ++....  +.....|
T Consensus         2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr   81 (242)
T COG4161           2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR   81 (242)
T ss_pred             ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence            4789999 8999988888886     78999999999999999999999999999988776521 111101  1112246


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R  148 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~  148 (159)
                      +.+++|||.         |+++|++||.+|+.-.... ...-.+.....++.++|+.+.|..   +.|..+|+ |+   +
T Consensus        82 ~~vgmvfqq---------y~lwphltv~enlieap~k-v~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva  151 (242)
T COG4161          82 RNVGMVFQQ---------YNLWPHLTVQENLIEAPCR-VLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA  151 (242)
T ss_pred             Hhhhhhhhh---------hccCchhHHHHHHHhhhHH-HhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence            789999998         6899999999998654211 111123334567888999998865   67889998 33   9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      |||+|+++|+
T Consensus       152 iaralmmkpq  161 (242)
T COG4161         152 IARALMMEPQ  161 (242)
T ss_pred             HHHHHhcCCc
Confidence            9999999996

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.88  E-value=2e-24  Score=155.95  Aligned_cols=134  Identities=19%  Similarity=0.246  Sum_probs=101.0

Q ss_pred             EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      |+++|+ +.|++    ..++.+++     +++++|+||||||||||+++|+|+++|++|+|.++| .++.       ..+
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~-------~~~   72 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG-EPVT-------GPG   72 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECc-------ccc
Confidence            468899 88976    67888887     689999999999999999999999999999999887 2221       124


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R  148 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~  148 (159)
                      ..+++++|.+         .+++.+|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |+   +
T Consensus        73 ~~i~~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~  141 (220)
T cd03293          73 PDRGYVFQQD---------ALLPWLTVLDNVALGLE--LQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVA  141 (220)
T ss_pred             CcEEEEeccc---------ccccCCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH
Confidence            5799999985         35666789888876421  110011122456788999999965   45677777 33   9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      +|++++.+|+
T Consensus       142 la~al~~~p~  151 (220)
T cd03293         142 LARALAVDPD  151 (220)
T ss_pred             HHHHHHcCCC
Confidence            9999999986

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=3.2e-25  Score=153.44  Aligned_cols=145  Identities=19%  Similarity=0.298  Sum_probs=113.5

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      ..|+++|+ .+|++..++.++|     |++.+|||||||||||++++|+|--+|+.|++.+++-.++.. -+.....++.
T Consensus         4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~-~~e~~IAr~G   82 (249)
T COG4674           4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTK-LPEHRIARAG   82 (249)
T ss_pred             ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhcc-CCHHHHHHhc
Confidence            46899999 9999999999988     799999999999999999999999999999999988555543 2333446788


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE------EEECCEEeCHHHHHHHHHhcCccc--CCCeeEEe--Ch
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR------YMINGSSVNPKRVSDLFSSVNLNV--NNPHFLIM--QG  147 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~l~~--q~  147 (159)
                      |+--||.|         ..|+++||++|+.+.....      .+..-..+...+++++|+..+|.+  +.++.+++  |+
T Consensus        83 IGRKFQ~P---------tVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK  153 (249)
T COG4674          83 IGRKFQKP---------TVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK  153 (249)
T ss_pred             cCccccCC---------eehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence            99999997         5889999999997643211      111112233568999999999987  34455555  44


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         .|.++++.+|+
T Consensus       154 QwLEIGMll~Q~P~  167 (249)
T COG4674         154 QWLEIGMLLAQDPK  167 (249)
T ss_pred             hhhhhheeeccCCc
Confidence               99999999996

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.88  E-value=5.5e-24  Score=155.67  Aligned_cols=143  Identities=16%  Similarity=0.243  Sum_probs=103.4

Q ss_pred             EEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-CceeEEE
Q psy17514          6 MVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~   77 (159)
                      |+++|+ +.|+ +..++.+++     +++++|+||||||||||+++|+|+++|++|+|.++| .++...... ....+..
T Consensus         2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~   80 (243)
T TIGR02315         2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEG-TDITKLRGKKLRKLRRR   80 (243)
T ss_pred             eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECC-EEhhhCCHHHHHHHHhh
Confidence            789999 9997 777888888     689999999999999999999999999999999887 333210000 0112457


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE---EE-E-C-CEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR---YM-I-N-GSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG  147 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~---~~-~-~-~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~  147 (159)
                      +++++|++         .+++.+|+.+|+.++....   +. . . ......+++.++++.++|..   ..+..+|+ |+
T Consensus        81 i~~v~q~~---------~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  151 (243)
T TIGR02315        81 IGMIFQHY---------NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ  151 (243)
T ss_pred             eEEEcCCC---------cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence            99999985         3667789999987642210   00 0 0 11122456788999999965   45677777 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         +||++++.+|+
T Consensus       152 qrv~la~al~~~p~  165 (243)
T TIGR02315       152 QRVAIARALAQQPD  165 (243)
T ss_pred             HHHHHHHHHhcCCC
Confidence               99999999986

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=6.3e-24  Score=154.57  Aligned_cols=146  Identities=17%  Similarity=0.184  Sum_probs=104.6

Q ss_pred             CeEEEEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC
Q psy17514          1 MYIKSMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ   70 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~   70 (159)
                      |.-..|+++|+ +.|++    ..+|++++     +++++|+||||||||||+++|+|+++|++|+|.++| +++......
T Consensus         1 ~~~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~i~~~~~~   79 (233)
T PRK11629          1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNG-QPMSKLSSA   79 (233)
T ss_pred             CCCceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EEcCcCCHH
Confidence            33345899999 99964    46888887     689999999999999999999999999999999987 332110000


Q ss_pred             C--ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe
Q psy17514         71 A--GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM  145 (159)
Q Consensus        71 ~--~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~  145 (159)
                      .  ...++.|++++|++         .+++.+|+.+|+.+...  +.........+++.++++.++|..   ..+..+|+
T Consensus        80 ~~~~~~~~~i~~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg  148 (233)
T PRK11629         80 AKAELRNQKLGFIYQFH---------HLLPDFTALENVAMPLL--IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSG  148 (233)
T ss_pred             HHHHHHhccEEEEecCc---------ccCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCH
Confidence            0  01125699999985         46677899999876421  110011222356788999999965   45677777


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   ++|++++.+|+
T Consensus       149 G~~qrl~la~al~~~p~  165 (233)
T PRK11629        149 GERQRVAIARALVNNPR  165 (233)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence             33   99999999986

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.88  E-value=2.5e-24  Score=162.10  Aligned_cols=138  Identities=15%  Similarity=0.184  Sum_probs=105.2

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      ++++|+ ++|++..+|++++     |++++|+|||||||||||++|+|++.|++|+|.+.| .++.. .  ....++.++
T Consensus         3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g-~~~~~-~--~~~~~~~ig   78 (301)
T TIGR03522         3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCG-EDVLQ-N--PKEVQRNIG   78 (301)
T ss_pred             EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccc-C--hHHHHhceE
Confidence            799999 9999888999988     789999999999999999999999999999999988 33211 1  112356799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|.+         .+++.+|+.+|+.+...  .+........+++.++++.++|..   ..+..+|+ |+   ++|++
T Consensus        79 ~~~q~~---------~l~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a  147 (301)
T TIGR03522        79 YLPEHN---------PLYLDMYVREYLQFIAG--IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQA  147 (301)
T ss_pred             EecCCC---------CCCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHH
Confidence            999985         47778899999876432  110011222457888999999975   34566776 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       148 l~~~p~  153 (301)
T TIGR03522       148 LIHDPK  153 (301)
T ss_pred             HhcCCC
Confidence            999996

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.88  E-value=3e-24  Score=153.93  Aligned_cols=135  Identities=13%  Similarity=0.169  Sum_probs=101.9

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++.+++     +++++|+||||||||||+++|+|+++|++|+|.++| .++..      ..++.++
T Consensus         1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~------~~~~~i~   73 (210)
T cd03269           1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG-KPLDI------AARNRIG   73 (210)
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-CchhH------HHHccEE
Confidence            468899 8898777888877     789999999999999999999999999999999987 33321      1345799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.+...  .+........+++.++++.+++..   ..+..+|+ |+   ++|++
T Consensus        74 ~~~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a  142 (210)
T cd03269          74 YLPEER---------GLYPKMKVIDQLVYLAQ--LKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAA  142 (210)
T ss_pred             EeccCC---------cCCcCCcHHHHHHHHHH--HcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHH
Confidence            999985         46667799998866422  110011223456788999999965   45667777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       143 l~~~p~  148 (210)
T cd03269         143 VIHDPE  148 (210)
T ss_pred             HhcCCC
Confidence            999885

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.88  E-value=1.8e-24  Score=156.13  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=101.7

Q ss_pred             EEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          6 MVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      |+++|+ +.|++  ..++++++     |++++|+||||||||||+++|+|+++|++|+|.++| .++.. .  ....++.
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~--~~~~~~~   76 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYING-YSIRT-D--RKAARQS   76 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-Eeccc-c--hHHHhhh
Confidence            478899 89976  67888887     789999999999999999999999999999999887 33211 1  1113457


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      +++++|++         .+++..|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |+   +||
T Consensus        77 i~~v~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  145 (220)
T cd03263          77 LGYCPQFD---------ALFDELTVREHLRFYAR--LKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLA  145 (220)
T ss_pred             EEEecCcC---------CccccCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHH
Confidence            99999985         46667789888876422  110011122356788999999965   44667777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       146 ~al~~~p~  153 (220)
T cd03263         146 IALIGGPS  153 (220)
T ss_pred             HHHhcCCC
Confidence            99999986

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.88  E-value=2e-23  Score=153.82  Aligned_cols=129  Identities=22%  Similarity=0.298  Sum_probs=102.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..++++++     |++++|+||||||||||+++|+|+++|++|+|.+++ .++.       ..++.+
T Consensus        12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g-~~~~-------~~~~~i   83 (257)
T PRK11247         12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGT-APLA-------EAREDT   83 (257)
T ss_pred             cEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC-EEHH-------HhhCce
Confidence            5899999 9998888888888     789999999999999999999999999999998876 2221       124569


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      ++++|++         .+++.+|+.+|+.++..      .  ...+++.++++.++|..   ..+..+|+ |+   +||+
T Consensus        84 ~~v~q~~---------~l~~~~tv~enl~~~~~------~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~lar  146 (257)
T PRK11247         84 RLMFQDA---------RLLPWKKVIDNVGLGLK------G--QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALAR  146 (257)
T ss_pred             EEEecCc---------cCCCCCcHHHHHHhccc------c--hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence            9999985         35666799999876421      1  12457788999999965   45677777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       147 aL~~~p~  153 (257)
T PRK11247        147 ALIHRPG  153 (257)
T ss_pred             HHhcCCC
Confidence            9999986

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.88  E-value=9e-24  Score=150.99  Aligned_cols=132  Identities=15%  Similarity=0.174  Sum_probs=99.2

Q ss_pred             EEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          7 VLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         7 ~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      +++|+ +.|++ ..++.+++     +++++|+|||||||||||++|+|+++|++|+|.+++ .++..     ...++.++
T Consensus         1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-----~~~~~~i~   74 (205)
T cd03226           1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG-KPIKA-----KERRKSIG   74 (205)
T ss_pred             CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EEhhh-----HHhhcceE
Confidence            36788 88987 77888887     789999999999999999999999999999999887 33311     11345799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++.        ..+...|+.+|+.++..  .  .+  ...+++.++++.++|..   ..+..+|+ |+   ++|++
T Consensus        75 ~~~q~~~--------~~~~~~tv~e~l~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara  140 (205)
T cd03226          75 YVMQDVD--------YQLFTDSVREELLLGLK--E--LD--AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAA  140 (205)
T ss_pred             EEecChh--------hhhhhccHHHHHhhhhh--h--cC--ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHH
Confidence            9999852        12234588898876432  1  11  12357889999999975   45677777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       141 l~~~p~  146 (205)
T cd03226         141 LLSGKD  146 (205)
T ss_pred             HHhCCC
Confidence            999986

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.8e-24  Score=167.64  Aligned_cols=142  Identities=15%  Similarity=0.233  Sum_probs=104.1

Q ss_pred             EEEEeCe-eeecCCe------------------------eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514          5 SMVLDGF-KSYGTRV------------------------EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVK   54 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~------------------------~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g   54 (159)
                      .|+++|+ |.|+...                        ++++++     +++++|+|||||||||||++|+|++.|++|
T Consensus         4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG   83 (400)
T PRK10070          4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG   83 (400)
T ss_pred             EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence            5888888 8887643                        677777     789999999999999999999999999999


Q ss_pred             chhhhhHHHHHHhhCCC--ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHh
Q psy17514         55 QVRANTLQELIYKNGQA--GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSS  132 (159)
Q Consensus        55 ~i~~~~~~~~~~~~~~~--~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~  132 (159)
                      +|.++| .++.......  ...++.++|+||++         .+++++|+.+|+.++..  ..........+++.++++.
T Consensus        84 ~I~i~G-~~i~~~~~~~l~~~~~~~igyv~Q~~---------~l~~~~Tv~enl~~~~~--~~~~~~~~~~~~~~e~L~~  151 (400)
T PRK10070         84 QVLIDG-VDIAKISDAELREVRRKKIAMVFQSF---------ALMPHMTVLDNTAFGME--LAGINAEERREKALDALRQ  151 (400)
T ss_pred             EEEECC-EECCcCCHHHHHHHHhCCEEEEECCC---------cCCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHH
Confidence            999987 3321100000  01235799999985         57788899999987532  1101112234577889999


Q ss_pred             cCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        133 VNLNV---NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       133 ~~l~~---~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      ++|..   ..|..||+ |+   +|||+|+.+|+
T Consensus       152 ~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~  184 (400)
T PRK10070        152 VGLENYAHSYPDELSGGMRQRVGLARALAINPD  184 (400)
T ss_pred             cCCChhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence            99975   56788888 33   99999999996

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2.6e-24  Score=160.43  Aligned_cols=145  Identities=19%  Similarity=0.233  Sum_probs=105.7

Q ss_pred             CeEEEEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCc
Q psy17514          1 MYIKSMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAG   72 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~   72 (159)
                      |+...|+++|+ +.|++  ..++++++     |++++|+||||||||||+++|+|+++|++|+|.++| .++.. .. ..
T Consensus         1 ~~~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g-~~i~~-~~-~~   77 (279)
T PRK13635          1 MKEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG-MVLSE-ET-VW   77 (279)
T ss_pred             CCCceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-EECCc-Cc-HH
Confidence            55556999999 99964  45888887     789999999999999999999999999999999988 33211 01 11


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch-
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-  147 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-  147 (159)
                      ..++.|+|+||++.        ..+...|+.+|+.++... ... ......+++.++++.++|..   ..+..+|+ |+ 
T Consensus        78 ~~~~~i~~~~q~~~--------~~~~~~tv~enl~~~~~~-~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q  147 (279)
T PRK13635         78 DVRRQVGMVFQNPD--------NQFVGATVQDDVAFGLEN-IGV-PREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQ  147 (279)
T ss_pred             HHhhheEEEEeCHH--------HhcccccHHHHHhhhHhh-CCC-CHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHH
Confidence            12457999999852        244556899998765321 100 11222356788999999975   46777777 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        +||++++.+|+
T Consensus       148 rv~laral~~~p~  160 (279)
T PRK13635        148 RVAIAGVLALQPD  160 (279)
T ss_pred             HHHHHHHHHcCCC
Confidence              99999999996

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.88  E-value=1.8e-24  Score=155.83  Aligned_cols=138  Identities=11%  Similarity=0.154  Sum_probs=102.9

Q ss_pred             EEEeCe-eeecCC----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          6 MVLDGF-KSYGTR----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         6 l~l~~~-~~~~~~----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      |+++|+ +.|++.    .++.+++     +++++|+|+||||||||+++|+|+++|++|+|.+++ .++.. .  ....+
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~--~~~~~   77 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG-FDVVK-E--PAEAR   77 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECC-EEccc-C--HHHHH
Confidence            789999 999876    7888887     789999999999999999999999999999999887 33211 1  11134


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R  148 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~  148 (159)
                      +.+++++|++         .+++.+|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |+   +
T Consensus        78 ~~i~~~~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~  146 (218)
T cd03266          78 RRLGFVSDST---------GLYDRLTARENLEYFAG--LYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVA  146 (218)
T ss_pred             hhEEEecCCc---------ccCcCCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHH
Confidence            6799999985         46677789999875422  110011123457788999999975   45667777 33   9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      +|++++.+|+
T Consensus       147 laral~~~p~  156 (218)
T cd03266         147 IARALVHDPP  156 (218)
T ss_pred             HHHHHhcCCC
Confidence            9999999986

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.88  E-value=4e-24  Score=154.37  Aligned_cols=141  Identities=16%  Similarity=0.197  Sum_probs=101.6

Q ss_pred             EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC--ce
Q psy17514          6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA--GV   73 (159)
Q Consensus         6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~--~~   73 (159)
                      |+++|+ +.|++    ..++.+++     +++++|+|||||||||||++|+|+++|++|++.++| .++.......  ..
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~   80 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNG-QSLSKLSSNERAKL   80 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEhhhcCHhHHHHH
Confidence            688999 89964    46888887     789999999999999999999999999999999887 3332111000  01


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--  147 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--  147 (159)
                      .++.+++++|++         .+++.+|+.+|+.+...  +.........+++.++++.++|..   ..+..+|+ |+  
T Consensus        81 ~~~~i~~v~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  149 (221)
T TIGR02211        81 RNKKLGFIYQFH---------HLLPDFTALENVAMPLL--IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQR  149 (221)
T ss_pred             HHhcEEEEeccc---------ccCCCCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH
Confidence            125799999985         36667799999876421  110011122356788999999965   45677877 33  


Q ss_pred             -hHhHhhcCCCC
Q psy17514        148 -RVTKVLNMKPH  158 (159)
Q Consensus       148 -~ia~~l~~~p~  158 (159)
                       ++|++++.+|+
T Consensus       150 v~laral~~~p~  161 (221)
T TIGR02211       150 VAIARALVNQPS  161 (221)
T ss_pred             HHHHHHHhCCCC
Confidence             99999999986

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.88  E-value=9e-22  Score=169.77  Aligned_cols=153  Identities=39%  Similarity=0.652  Sum_probs=127.7

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhhHHHHHHhhCCC--ceeEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTLQELIYKNGQA--GVTKAS   77 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~~~~~~~~~~~~--~~~~~~   77 (159)
                      |.+..|++.|||+|.+.+ ..+++.++++|+||||||||++++||.+.++.. .-.+|...+.|+++.+...  +...+.
T Consensus         1 m~lk~i~l~gFKSF~~~~-~i~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~   79 (1163)
T COG1196           1 MYLKRIELKGFKSFADPT-EINFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAE   79 (1163)
T ss_pred             CeeeEEEEECcccCCCCe-eeecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceE
Confidence            789999999999999944 457899999999999999999999999999876 5567777777887655433  223589


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP  157 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p  157 (159)
                      |.++|.+.+.. .|.   .+.+.+|.+.+...+.+.|++||..+..+.+.+++...||..+++ ++++||.|..++.++|
T Consensus        80 V~l~fdN~d~~-~~~---~~~ei~v~Rri~r~g~S~Y~INg~~~~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~~kp  154 (1163)
T COG1196          80 VELTFDNSDNT-LPL---EYEEISVTRRIYRDGESEYYINGEKVRLKDIQDLLADSGIGKESY-SIVSQGKVEEIINAKP  154 (1163)
T ss_pred             EEEEEeCCCCc-CCc---ccceEEEEEEEEEcCCcEEEECCcEeeHHHHHHHHHhcCCCCCCC-ceeecccHHHHHcCCH
Confidence            99999987632 222   234788888888877789999999999999999999999998878 8999999999999999


Q ss_pred             CC
Q psy17514        158 HE  159 (159)
Q Consensus       158 ~~  159 (159)
                      .|
T Consensus       155 ~e  156 (1163)
T COG1196         155 EE  156 (1163)
T ss_pred             HH
Confidence            64

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.88  E-value=2.1e-24  Score=155.00  Aligned_cols=142  Identities=19%  Similarity=0.254  Sum_probs=102.0

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++++++     +++++|+||||||||||+++|+|+++|++|++.++| .++..........++.++
T Consensus         1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~i~   79 (213)
T cd03262           1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDG-LKLTDDKKNINELRQKVG   79 (213)
T ss_pred             CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCccchhHHHHHhcce
Confidence            468899 8998878888887     689999999999999999999999999999999887 222100000011346799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.+.... ++-.......+++.++++.+++..   ..+..+|+ |+   ++|++
T Consensus        80 ~~~q~~---------~~~~~~t~~e~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a  149 (213)
T cd03262          80 MVFQQF---------NLFPHLTVLENITLAPIK-VKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARA  149 (213)
T ss_pred             EEeccc---------ccCCCCcHHHHHHhHHHH-hcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHH
Confidence            999985         366677999988764210 110011122356788899999865   45677777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       150 l~~~p~  155 (213)
T cd03262         150 LAMNPK  155 (213)
T ss_pred             HhcCCC
Confidence            999986

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.87  E-value=7.2e-24  Score=153.65  Aligned_cols=140  Identities=16%  Similarity=0.155  Sum_probs=101.7

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh-----CCcccchhhhhHHHHHHhhCCCcee
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL-----GIQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~-----~~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      |+++|+ +.|+++.++++++     +++++|+||||||||||+++|+|++     +|++|+|.++| +++..........
T Consensus         1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~~   79 (227)
T cd03260           1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG-KDIYDLDVDVLEL   79 (227)
T ss_pred             CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECC-EEhhhcchHHHHH
Confidence            478899 8998888888887     7899999999999999999999999     89999999987 3332111001113


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCE-EeCHHHHHHHHHhcCccc---CC--CeeEEe-Ch
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS-SVNPKRVSDLFSSVNLNV---NN--PHFLIM-QG  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~---~~--~~~l~~-q~  147 (159)
                      ++.+++++|++         .++ .+|+.+|+.++..  ...... ....+++.++++.+++..   ..  +..+|+ |+
T Consensus        80 ~~~i~~~~q~~---------~~~-~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~  147 (227)
T cd03260          80 RRRVGMVFQKP---------NPF-PGSIYDNVAYGLR--LHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQ  147 (227)
T ss_pred             HhhEEEEecCc---------hhc-cccHHHHHHhHHH--hcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHH
Confidence            46799999985         345 5799999876532  110011 112456788999999965   23  477777 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         +||++++.+|+
T Consensus       148 qrv~la~al~~~p~  161 (227)
T cd03260         148 QRLCLARALANEPE  161 (227)
T ss_pred             HHHHHHHHHhcCCC
Confidence               99999999986

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=5.2e-24  Score=156.90  Aligned_cols=134  Identities=16%  Similarity=0.195  Sum_probs=101.5

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++.+++     |++++|+|||||||||||++|+|+++|++|+|.++| .++.   .    ....++
T Consensus         2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~---~----~~~~~~   73 (255)
T PRK11248          2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDG-KPVE---G----PGAERG   73 (255)
T ss_pred             EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECC---C----CCCcEE
Confidence            789999 9998878888888     789999999999999999999999999999999887 3321   1    123589


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++..|+.+|+.++..  ..........+++.++++.++|..   ..+..+|+ |+   ++|++
T Consensus        74 ~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~lara  142 (255)
T PRK11248         74 VVFQNE---------GLLPWRNVQDNVAFGLQ--LAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARA  142 (255)
T ss_pred             EEeCCC---------ccCCCCcHHHHHHhHHH--HcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHH
Confidence            999985         35666789998876421  110011122356788999999965   45677877 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       143 l~~~p~  148 (255)
T PRK11248        143 LAANPQ  148 (255)
T ss_pred             HhcCCC
Confidence            999986

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.87  E-value=2.4e-24  Score=156.93  Aligned_cols=142  Identities=18%  Similarity=0.273  Sum_probs=101.5

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++.+++     |++++|+||||||||||+++|+|+++|++|+|.++| .++.. .......+..++
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~~~~~~~~~i~   78 (236)
T cd03219           1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG-EDITG-LPPHEIARLGIG   78 (236)
T ss_pred             CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECC-EECCC-CCHHHHHhcCEE
Confidence            468899 8998777888887     689999999999999999999999999999999887 22211 000011234699


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE--------CCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI--------NGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG  147 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~  147 (159)
                      +++|++         .+++.+|+.+|+.++.......        .......+++.++++.++|..   ..+..+|+ |+
T Consensus        79 ~v~q~~---------~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  149 (236)
T cd03219          79 RTFQIP---------RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQ  149 (236)
T ss_pred             EEeccc---------ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHH
Confidence            999985         4677789999987643210000        001122346788999999965   45667777 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         ++|++++.+|+
T Consensus       150 qrv~la~al~~~p~  163 (236)
T cd03219         150 RRLEIARALATDPK  163 (236)
T ss_pred             HHHHHHHHHhcCCC
Confidence               99999999986

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.87  E-value=3.8e-24  Score=156.32  Aligned_cols=142  Identities=17%  Similarity=0.215  Sum_probs=103.2

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++++++     +++++|+||||||||||+++|+|++.|++|+|+++| .++..........++.++
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~i~   80 (240)
T PRK09493          2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG-LKVNDPKVDERLIRQEAG   80 (240)
T ss_pred             EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECCcCChhHHHHhhceE
Confidence            789999 9998888888887     689999999999999999999999999999999987 232110000011346799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.++... ..........+++.++++.++|..   ..+..+|+ |+   +||++
T Consensus        81 ~~~q~~---------~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a  150 (240)
T PRK09493         81 MVFQQF---------YLFPHLTALENVMFGPLR-VRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA  150 (240)
T ss_pred             EEeccc---------ccCCCCcHHHHHHhHHHH-hcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence            999985         356677898888664210 110111222356788999999965   45677777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       151 l~~~p~  156 (240)
T PRK09493        151 LAVKPK  156 (240)
T ss_pred             HhcCCC
Confidence            999986

>PRK10908 cell division protein FtsE; Provisional

Probab=99.87  E-value=4.7e-24  Score=154.14  Aligned_cols=141  Identities=19%  Similarity=0.266  Sum_probs=101.8

Q ss_pred             EEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-CceeEEE
Q psy17514          6 MVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~   77 (159)
                      |+++|+ +.| +++.++++++     +++++|+||||||||||+++|+|+++|++|+|.++| .++...... ....++.
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~i~~~~~~~~~~~~~~   80 (222)
T PRK10908          2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSG-HDITRLKNREVPFLRRQ   80 (222)
T ss_pred             EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEcccCChhHHHHHHhh
Confidence            789999 999 6677888887     789999999999999999999999999999999887 332110000 0012467


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      ++|++|++         .+++.+|+.+|+.+...  ..........+++.++++.+++..   ..+..+|+ |+   ++|
T Consensus        81 i~~~~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  149 (222)
T PRK10908         81 IGMIFQDH---------HLLMDRTVYDNVAIPLI--IAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIA  149 (222)
T ss_pred             eEEEecCc---------cccccccHHHHHHhHHH--hcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHH
Confidence            99999985         35566788888876421  110011112345778899999865   45677777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       150 ral~~~p~  157 (222)
T PRK10908        150 RAVVNKPA  157 (222)
T ss_pred             HHHHcCCC
Confidence            99999986

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.5e-24  Score=159.69  Aligned_cols=143  Identities=18%  Similarity=0.266  Sum_probs=101.9

Q ss_pred             EEEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|+.     +.+|++++     |++++|+||||||||||+++|+|++.|++|+|.++| .++.........
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~~~~~~~~   80 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDG-VDITDKKVKLSD   80 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECC-EECCCcCccHHH
Confidence            4899999 99964     35888887     789999999999999999999999999999999988 332110000011


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc--c---CCCeeEEe-Ch
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN--V---NNPHFLIM-QG  147 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~---~~~~~l~~-q~  147 (159)
                      .+..|+|+||++..       .++ ..||.+|+.++... ... ......+++.++++.++|.  .   ..+..+|+ |+
T Consensus        81 ~~~~ig~v~q~~~~-------~~~-~~tv~e~l~~~~~~-~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~  150 (287)
T PRK13637         81 IRKKVGLVFQYPEY-------QLF-EETIEKDIAFGPIN-LGL-SEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQK  150 (287)
T ss_pred             HhhceEEEecCchh-------ccc-cccHHHHHHhHHHH-CCC-CHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHH
Confidence            35689999998631       122 35888988764321 101 1112235678899999995  2   45677877 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         +||++|+.+|+
T Consensus       151 qrv~iAraL~~~P~  164 (287)
T PRK13637        151 RRVAIAGVVAMEPK  164 (287)
T ss_pred             HHHHHHHHHHcCCC
Confidence               99999999996

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.87  E-value=7.3e-24  Score=151.72  Aligned_cols=133  Identities=14%  Similarity=0.218  Sum_probs=102.4

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++++++     +++++|+||||||||||+++|+|+++|++|+|.+++ .++...    ...++.++
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~~----~~~~~~i~   75 (208)
T cd03268           1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG-KSYQKN----IEALRRIG   75 (208)
T ss_pred             CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-Ccccch----HHHHhhEE
Confidence            468899 8998888888887     689999999999999999999999999999999987 332111    11345799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.+...  ..  +.  ..+++.++++.++|..   ..+..+|+ |+   ++|++
T Consensus        76 ~~~q~~---------~~~~~~tv~e~l~~~~~--~~--~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a  140 (208)
T cd03268          76 ALIEAP---------GFYPNLTARENLRLLAR--LL--GI--RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALA  140 (208)
T ss_pred             EecCCC---------ccCccCcHHHHHHHHHH--hc--CC--cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHH
Confidence            999985         36677899999876432  11  11  3467888999999965   44667777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       141 l~~~p~  146 (208)
T cd03268         141 LLGNPD  146 (208)
T ss_pred             HhcCCC
Confidence            999985

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.87  E-value=3e-24  Score=154.35  Aligned_cols=141  Identities=18%  Similarity=0.267  Sum_probs=102.2

Q ss_pred             EEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-CceeEEE
Q psy17514          6 MVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~   77 (159)
                      |+++|+ +.| ++..++.+++     +++++|+||||||||||+++|+|+++|++|+|.+++ .++...... ....++.
T Consensus         2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~   80 (214)
T TIGR02673         2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG-EDVNRLRGRQLPLLRRR   80 (214)
T ss_pred             EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEcccCCHHHHHHHHhh
Confidence            789999 999 4667888887     689999999999999999999999999999998877 332110000 0012457


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      +++++|++         .+++.+|+.+|+.+...  +.........+++.++++.++|..   ..+..+|+ |+   ++|
T Consensus        81 i~~~~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  149 (214)
T TIGR02673        81 IGVVFQDF---------RLLPDRTVYENVALPLE--VRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIA  149 (214)
T ss_pred             eEEEecCh---------hhccCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence            99999985         35667789998876421  110011122456788999999965   45677777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       150 ~al~~~p~  157 (214)
T TIGR02673       150 RAIVNSPP  157 (214)
T ss_pred             HHHhCCCC
Confidence            99999986

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.87  E-value=3.3e-24  Score=156.00  Aligned_cols=141  Identities=19%  Similarity=0.268  Sum_probs=103.1

Q ss_pred             EEEeCe-eeecCC----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC-cee
Q psy17514          6 MVLDGF-KSYGTR----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA-GVT   74 (159)
Q Consensus         6 l~l~~~-~~~~~~----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~   74 (159)
                      |+++|+ +.|++.    .++.+++     +++++|+||||||||||+++|+|+++|++|+|.++| .++....... ...
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~   80 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDG-TDLTLLSGKELRKA   80 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEcccCCHHHHHHH
Confidence            789999 999876    7888887     789999999999999999999999999999999987 3321100000 012


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---  147 (159)
                      ++.+++++|++         .+++.+|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |+   
T Consensus        81 ~~~i~~~~q~~---------~~~~~~t~~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv  149 (233)
T cd03258          81 RRRIGMIFQHF---------NLLSSRTVFENVALPLE--IAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRV  149 (233)
T ss_pred             HhheEEEccCc---------ccCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHH
Confidence            45799999985         46677899999876421  110111122356788999999975   45667776 33   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      +||++++.+|+
T Consensus       150 ~la~al~~~p~  160 (233)
T cd03258         150 GIARALANNPK  160 (233)
T ss_pred             HHHHHHhcCCC
Confidence            99999999985

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.2e-23  Score=154.56  Aligned_cols=142  Identities=15%  Similarity=0.214  Sum_probs=102.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++++++     +++++|+||||||||||+++|+|++.|     ++|+|.++| .++.. .. ...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g-~~i~~-~~-~~~   79 (250)
T PRK14247          3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG-QDIFK-MD-VIE   79 (250)
T ss_pred             eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC-EECCc-CC-HHH
Confidence            4899999 9998888888888     689999999999999999999999874     699999887 33211 11 112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-  145 (159)
                      .+..|++++|++         .+++.+|+.+|+.++..............+++.++++.++|..       ..+..+|+ 
T Consensus        80 ~~~~i~~v~q~~---------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG  150 (250)
T PRK14247         80 LRRRVQMVFQIP---------NPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGG  150 (250)
T ss_pred             HhccEEEEeccC---------ccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHH
Confidence            356799999985         3566789999987643200000111222356788999999841       35667777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   ++|++++.+|+
T Consensus       151 ~~qrv~laral~~~p~  166 (250)
T PRK14247        151 QQQRLCIARALAFQPE  166 (250)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999986

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.87  E-value=9.7e-24  Score=154.18  Aligned_cols=143  Identities=17%  Similarity=0.254  Sum_probs=102.4

Q ss_pred             EEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-CceeEEE
Q psy17514          6 MVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~   77 (159)
                      |+++|+ +.|++ ..++.+++     |++++|+||||||||||+++|+|+++|++|+|.++| +++...... ....++.
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~   79 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDG-TDINKLKGKALRQLRRQ   79 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECC-EeccccCHhHHHHHHhc
Confidence            468899 89986 77888888     789999999999999999999999999999999887 332110000 0112457


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE---E-EECC--EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR---Y-MING--SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG  147 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~---~-~~~~--~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~  147 (159)
                      +++++|++         .+++.+|+.+|+.++....   + ...+  .....+++.++++.++|..   ..+..+|+ |+
T Consensus        80 i~~~~q~~---------~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  150 (241)
T cd03256          80 IGMIFQQF---------NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQ  150 (241)
T ss_pred             cEEEcccC---------cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHH
Confidence            99999985         4667778988887642210   0 0001  1122456788899999964   45677777 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         +||++++.+|+
T Consensus       151 qrv~la~al~~~p~  164 (241)
T cd03256         151 QRVAIARALMQQPK  164 (241)
T ss_pred             HHHHHHHHHhcCCC
Confidence               99999999986

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=9.9e-24  Score=154.22  Aligned_cols=141  Identities=11%  Similarity=0.181  Sum_probs=103.3

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|+++.++.+++     |++++|+||||||||||+++|+|+++|++|++.++| .++.. .......+..+
T Consensus         3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~-~~~~~~~~~~i   80 (241)
T PRK10895          3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDD-EDISL-LPLHARARRGI   80 (241)
T ss_pred             eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECCC-CCHHHHHHhCe
Confidence            4899999 9998888888888     789999999999999999999999999999999887 23211 00001124579


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC-CEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN-GSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      ++++|++         .+++.+|+.+|+.+...  +... ......+++.++++.+++..   ..+..+|+ |.   ++|
T Consensus        81 ~~~~q~~---------~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  149 (241)
T PRK10895         81 GYLPQEA---------SIFRRLSVYDNLMAVLQ--IRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIA  149 (241)
T ss_pred             EEeccCC---------cccccCcHHHHHhhhhh--cccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHH
Confidence            9999985         46667789998876421  1100 11122456788999999865   34567777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       150 ral~~~p~  157 (241)
T PRK10895        150 RALAANPK  157 (241)
T ss_pred             HHHhcCCC
Confidence            99999985

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.87  E-value=1e-23  Score=154.89  Aligned_cols=143  Identities=18%  Similarity=0.224  Sum_probs=103.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC------CCc
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG------QAG   72 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~------~~~   72 (159)
                      .|+++|+ +.|+++.++.+++     |++++|+||||||||||+++|+|++.|++|+|.+++ .++.....      ...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~   81 (250)
T PRK11264          3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGD-ITIDTARSLSQQKGLIR   81 (250)
T ss_pred             cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC-EEccccccccchhhHHH
Confidence            4899999 9998878889888     689999999999999999999999999999998877 33211000      001


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch-
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-  147 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-  147 (159)
                      ..+..+++++|++         .+++..|+.+|+.++.. .+.........+++.++++.++|..   ..+..+|+ |+ 
T Consensus        82 ~~~~~i~~v~q~~---------~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~q  151 (250)
T PRK11264         82 QLRQHVGFVFQNF---------NLFPHRTVLENIIEGPV-IVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQ  151 (250)
T ss_pred             HhhhhEEEEecCc---------ccCCCCCHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHH
Confidence            1245799999985         46666789998865321 0110011122356788899999965   45677777 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        +||++++.+|+
T Consensus       152 rv~la~al~~~p~  164 (250)
T PRK11264        152 RVAIARALAMRPE  164 (250)
T ss_pred             HHHHHHHHhcCCC
Confidence              99999999985

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=8.8e-24  Score=169.09  Aligned_cols=147  Identities=16%  Similarity=0.209  Sum_probs=106.5

Q ss_pred             CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC--cccchhhhhHHHHHHhhCCCc
Q psy17514          1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI--QVKQVRANTLQELIYKNGQAG   72 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~--~~g~i~~~~~~~~~~~~~~~~   72 (159)
                      |+...|+++|+ +.|++..++++++     |++++|+||||||||||+++|+|+++|  ++|+|.++| .++.. .....
T Consensus         1 ~~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g-~~~~~-~~~~~   78 (506)
T PRK13549          1 MMEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEG-EELQA-SNIRD   78 (506)
T ss_pred             CCCceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC-EECCC-CCHHH
Confidence            44446999999 9998888899988     689999999999999999999999986  799999887 33210 00000


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-EEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-YMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG  147 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~  147 (159)
                      ..++.+++++|++         .+++.+|+.+|+.++.... ..........+++.++++.+++..   ..+..||+ |+
T Consensus        79 ~~~~~i~~v~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk  149 (506)
T PRK13549         79 TERAGIAIIHQEL---------ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQ  149 (506)
T ss_pred             HHHCCeEEEEecc---------ccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHH
Confidence            1235699999985         4667789999998763210 000011122356788999999964   35667777 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         +||++++.+|+
T Consensus       150 qrv~la~al~~~p~  163 (506)
T PRK13549        150 QLVEIAKALNKQAR  163 (506)
T ss_pred             HHHHHHHHHhcCCC
Confidence               99999999996

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.87  E-value=5.3e-24  Score=155.77  Aligned_cols=139  Identities=17%  Similarity=0.269  Sum_probs=102.2

Q ss_pred             EEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      |+++|+ +.|++ ..++++++     |++++|+||||||||||+++|+|+++|++|+|.++| +++.....  ...+..+
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~--~~~~~~i   77 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDG-EDIREQDP--VELRRKI   77 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-eEcCcCCh--HHhhcce
Confidence            468899 88987 77888887     789999999999999999999999999999999887 33211011  1124579


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-----CCCeeEEe-Ch---hH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-----NNPHFLIM-QG---RV  149 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~l~~-q~---~i  149 (159)
                      +|++|++         .+++.+|+.+|+.+...  +.........+++.++++.++|..     ..+..+|+ |+   ++
T Consensus        78 ~~~~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~l  146 (242)
T cd03295          78 GYVIQQI---------GLFPHMTVEENIALVPK--LLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGV  146 (242)
T ss_pred             EEEccCc---------cccCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHH
Confidence            9999985         46677899999876422  110111222456788999999972     45667777 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |++++.+|+
T Consensus       147 aral~~~p~  155 (242)
T cd03295         147 ARALAADPP  155 (242)
T ss_pred             HHHHhcCCC
Confidence            999999986

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=5.1e-24  Score=158.83  Aligned_cols=141  Identities=18%  Similarity=0.221  Sum_probs=103.6

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ +.|+.   ..+|.+++     |++++|+||||||||||+++|+|+++|++|+|.++| .++.. .. ....+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~-~~-~~~~~   80 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG-DLLTE-EN-VWDIR   80 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EECCc-Cc-HHHHH
Confidence            5899999 99963   45888887     789999999999999999999999999999999988 33211 00 11134


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R  148 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~  148 (159)
                      +.++++||++.        ..++..||.+|+.++..  ..........+++.++++.++|..   ..+..+|+ |+   +
T Consensus        81 ~~i~~v~q~~~--------~~~~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~  150 (279)
T PRK13650         81 HKIGMVFQNPD--------NQFVGATVEDDVAFGLE--NKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVA  150 (279)
T ss_pred             hhceEEEcChH--------HhcccccHHHHHHhhHH--hCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH
Confidence            57999999852        24455689999877532  110112222456788999999975   46778877 33   9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      ||++++.+|+
T Consensus       151 lAral~~~p~  160 (279)
T PRK13650        151 IAGAVAMRPK  160 (279)
T ss_pred             HHHHHHcCCC
Confidence            9999999996

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3.9e-23  Score=151.11  Aligned_cols=135  Identities=15%  Similarity=0.145  Sum_probs=101.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..++.+++     +++++|+||||||||||+++|+|+++|++|+|.++| .++.....  ...++.+
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~--~~~~~~i   79 (241)
T PRK14250          3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDG-VDIKTIDV--IDLRRKI   79 (241)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEhhhcCh--HHhhhcE
Confidence            4899999 9998878888888     789999999999999999999999999999999987 33321111  1134679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~---~ia  150 (159)
                      ++++|++         .+++ .|+.+|+.+...  .  .+  ....++.++++.++|. .   ..+..+|+ |+   ++|
T Consensus        80 ~~~~q~~---------~~~~-~tv~e~l~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la  143 (241)
T PRK14250         80 GMVFQQP---------HLFE-GTVKDNIEYGPM--L--KG--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIA  143 (241)
T ss_pred             EEEecCc---------hhch-hhHHHHHhcchh--h--cC--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence            9999985         3444 488888766421  1  11  1235678899999995 2   45677777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       144 ~al~~~p~  151 (241)
T PRK14250        144 RTLANNPE  151 (241)
T ss_pred             HHHhcCCC
Confidence            99999986

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.2e-23  Score=158.38  Aligned_cols=143  Identities=18%  Similarity=0.235  Sum_probs=102.5

Q ss_pred             EEEEeCe-eeecCC-----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh------
Q psy17514          5 SMVLDGF-KSYGTR-----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK------   67 (159)
Q Consensus         5 ~l~l~~~-~~~~~~-----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~------   67 (159)
                      .|+++|+ +.|++.     .+|.+++     |++++|+||||||||||+++|+|+++|++|++++++. +....      
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~-~~~~~~~~~~~   80 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFK-DEKNKKKTKEK   80 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEece-ecccccccccc
Confidence            4899999 999743     4788887     7899999999999999999999999999999998762 21000      


Q ss_pred             ---------h-------CCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHH
Q psy17514         68 ---------N-------GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFS  131 (159)
Q Consensus        68 ---------~-------~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~  131 (159)
                               .       ......++.|+|+||++..       .++ ..||.+|+.++...  .........+++.++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~-------~l~-~~tv~e~i~~~~~~--~~~~~~~~~~~~~~~l~  150 (305)
T PRK13651         81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEY-------QLF-EQTIEKDIIFGPVS--MGVSKEEAKKRAAKYIE  150 (305)
T ss_pred             cccccccccccccccccchHHHHHhceEEEeeCccc-------ccc-cccHHHHHHhhHHH--cCCCHHHHHHHHHHHHH
Confidence                     0       0001235679999998632       233 35899998775321  10112223467889999


Q ss_pred             hcCcc-c---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        132 SVNLN-V---NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       132 ~~~l~-~---~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      .++|. .   ..+..||+ |+   +||++|+.+|+
T Consensus       151 ~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~  185 (305)
T PRK13651        151 LVGLDESYLQRSPFELSGGQKRRVALAGILAMEPD  185 (305)
T ss_pred             HcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence            99995 3   46788887 33   99999999996

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.87  E-value=4.6e-24  Score=152.50  Aligned_cols=139  Identities=19%  Similarity=0.266  Sum_probs=100.1

Q ss_pred             EeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCceeEEEEE
Q psy17514          8 LDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAGVTKASVT   79 (159)
Q Consensus         8 l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~i~   79 (159)
                      ++|+ +.|++..++++++     |++++|+||||||||||+++|+|+++|++|++.+++ .++.....  .....++.++
T Consensus         1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~~i~   79 (206)
T TIGR03608         1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG-KETPPLNSKKASKFRREKLG   79 (206)
T ss_pred             CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC-EEccccchhhHHHHHHhCee
Confidence            4688 8898778888887     689999999999999999999999999999998887 23210000  0011346799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .++++.|+.+|+.+...  +.........+++.++++.++|..   ..+..+|+ |+   ++|++
T Consensus        80 ~~~q~~---------~~~~~~t~~e~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~lara  148 (206)
T TIGR03608        80 YLFQNF---------ALIENETVEENLDLGLK--YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARA  148 (206)
T ss_pred             EEecch---------hhccCCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHH
Confidence            999985         46677899998876421  110011223457788999999965   34567776 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       149 l~~~p~  154 (206)
T TIGR03608       149 ILKDPP  154 (206)
T ss_pred             HHcCCC
Confidence            999996

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.87  E-value=5.2e-24  Score=152.80  Aligned_cols=138  Identities=14%  Similarity=0.168  Sum_probs=101.1

Q ss_pred             EEEeCe-eeecCCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |+++|+ +.|++..++++++    .++++|+||||||||||+++|+|+++|++|+|.++| .++.. ..  ...++.+++
T Consensus         1 i~~~~~~~~~~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~--~~~~~~i~~   76 (211)
T cd03264           1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG-QDVLK-QP--QKLRRRIGY   76 (211)
T ss_pred             CEEEEEEEEECCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC-Ccccc-ch--HHHHhheEE
Confidence            468899 8998777888887    238999999999999999999999999999999887 33211 11  113567999


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhh
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVL  153 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l  153 (159)
                      ++|++         .+++.+|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |+   ++|+++
T Consensus        77 ~~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  145 (211)
T cd03264          77 LPQEF---------GVYPNFTVREFLDYIAW--LKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQAL  145 (211)
T ss_pred             ecCCC---------cccccCCHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHH
Confidence            99985         35667789998876421  110011122456788999999965   45677777 33   999999


Q ss_pred             cCCCC
Q psy17514        154 NMKPH  158 (159)
Q Consensus       154 ~~~p~  158 (159)
                      +.+|+
T Consensus       146 ~~~p~  150 (211)
T cd03264         146 VGDPS  150 (211)
T ss_pred             hcCCC
Confidence            99996

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.5e-23  Score=154.25  Aligned_cols=144  Identities=19%  Similarity=0.231  Sum_probs=101.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++++++     |++++|+||||||||||+++|+|+++|     ++|+|.++| .++.........
T Consensus         4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~   82 (253)
T PRK14267          4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG-RNIYSPDVDPIE   82 (253)
T ss_pred             eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC-EEccccccChHH
Confidence            6899999 9998888899988     789999999999999999999999987     489999887 332100000011


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .+..+++++|++         .+++.+|+.+|+.++..............+++.++++.+++.       ...+..+|+ 
T Consensus        83 ~~~~i~~~~q~~---------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  153 (253)
T PRK14267         83 VRREVGMVFQYP---------NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGG  153 (253)
T ss_pred             HhhceeEEecCC---------ccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHH
Confidence            345799999985         466778999998764210000001112234577888888873       145667777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +||++++.+|+
T Consensus       154 ~~qrv~laral~~~p~  169 (253)
T PRK14267        154 QRQRLVIARALAMKPK  169 (253)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999986

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.87  E-value=9e-24  Score=153.23  Aligned_cols=143  Identities=18%  Similarity=0.185  Sum_probs=102.5

Q ss_pred             EEEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--C
Q psy17514          4 KSMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--A   71 (159)
Q Consensus         4 ~~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~   71 (159)
                      ..|+++|+ +.|++    ..++.+++     |++++|+||||||||||+++|+|+++|++|+|.++| .++......  .
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g-~~~~~~~~~~~~   83 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVG-QPLHQMDEEARA   83 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECC-EEcccCCHHHHH
Confidence            35899999 99975    25788887     789999999999999999999999999999998877 222110000  0


Q ss_pred             ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch
Q psy17514         72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG  147 (159)
Q Consensus        72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~  147 (159)
                      ...+..+++++|++         .+++.+|+.+|+.+...  +.........+++.++++.++|..   ..+..+|+ |+
T Consensus        84 ~~~~~~i~~~~q~~---------~l~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~  152 (228)
T PRK10584         84 KLRAKHVGFVFQSF---------MLIPTLNALENVELPAL--LRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQ  152 (228)
T ss_pred             HHHhheEEEEEccc---------ccCCCcCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHH
Confidence            01135799999985         36667788888865421  110011223457888999999965   45677777 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         +||++++.+|+
T Consensus       153 qrl~la~al~~~p~  166 (228)
T PRK10584        153 QRVALARAFNGRPD  166 (228)
T ss_pred             HHHHHHHHHhcCCC
Confidence               99999999986

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.87  E-value=1.4e-23  Score=152.92  Aligned_cols=138  Identities=19%  Similarity=0.286  Sum_probs=101.6

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|+++.++.+++     |++++|+||||||||||+++|+|+.+|++|+|.++| .++.. ..  ....+.++
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~i~~-~~--~~~~~~i~   77 (236)
T TIGR03864         2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG-HDLRR-AP--RAALARLG   77 (236)
T ss_pred             EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-EEccc-CC--hhhhhhEE
Confidence            789999 9998888888887     789999999999999999999999999999999887 33211 11  11234799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.+...  ..-.......+++.++++.++|..   ..+..+|+ |.   ++|++
T Consensus        78 ~~~q~~---------~~~~~~t~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~lara  146 (236)
T TIGR03864        78 VVFQQP---------TLDLDLSVRQNLRYHAA--LHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARA  146 (236)
T ss_pred             EeCCCC---------CCcccCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHH
Confidence            999985         35566788888865421  110011112356788899999965   45677777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       147 l~~~p~  152 (236)
T TIGR03864       147 LLHRPA  152 (236)
T ss_pred             HhcCCC
Confidence            999986

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.87  E-value=5.5e-24  Score=161.83  Aligned_cols=146  Identities=16%  Similarity=0.181  Sum_probs=105.1

Q ss_pred             EEEEeCe-eeecC-------------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHH
Q psy17514          5 SMVLDGF-KSYGT-------------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELI   65 (159)
Q Consensus         5 ~l~l~~~-~~~~~-------------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~   65 (159)
                      .|+++|+ +.|+.             ..++++++     |++++|+|+||||||||+++|+|++.|++|+|+++| .++.
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G-~~i~   86 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLG-KDLL   86 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECC-EECC
Confidence            4899999 88962             35788887     789999999999999999999999999999999987 3331


Q ss_pred             HhhC-CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCC
Q psy17514         66 YKNG-QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNP  140 (159)
Q Consensus        66 ~~~~-~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~  140 (159)
                      .... .....++.|+|+||++..       .+++.+|+.+|+.++.........+....+++.++++.++|..    .+|
T Consensus        87 ~~~~~~~~~~r~~i~~v~Q~~~~-------~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p  159 (331)
T PRK15079         87 GMKDDEWRAVRSDIQMIFQDPLA-------SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP  159 (331)
T ss_pred             cCCHHHHHHHhCceEEEecCchh-------hcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc
Confidence            1000 000124579999999631       3667789999987643211000012223456788999999942    678


Q ss_pred             eeEEe-C--h-hHhHhhcCCCC
Q psy17514        141 HFLIM-Q--G-RVTKVLNMKPH  158 (159)
Q Consensus       141 ~~l~~-q--~-~ia~~l~~~p~  158 (159)
                      .+||+ |  + +||++|+.+|+
T Consensus       160 ~~LSgG~~QRv~iArAL~~~P~  181 (331)
T PRK15079        160 HEFSGGQCQRIGIARALILEPK  181 (331)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCC
Confidence            88988 3  3 99999999996

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.87  E-value=9.4e-24  Score=156.69  Aligned_cols=143  Identities=13%  Similarity=0.172  Sum_probs=103.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC-CCceeEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG-QAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~~~   77 (159)
                      .|+++|+ +.|+++.++.+++     |++++|+|||||||||||++|+|+.+|++|+|.++| .++..... .....++.
T Consensus         7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~~~~~~~~~~   85 (269)
T PRK11831          7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDG-ENIPAMSRSRLYTVRKR   85 (269)
T ss_pred             eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEccccChhhHHHHhhc
Confidence            5899999 9998888888887     789999999999999999999999999999999887 33211000 00012456


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      +++++|++         .+++.+|+.+|+.++... ..........+++.++++.++|..   ..+..+|+ |+   +||
T Consensus        86 i~~v~q~~---------~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la  155 (269)
T PRK11831         86 MSMLFQSG---------ALFTDMNVFDNVAYPLRE-HTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA  155 (269)
T ss_pred             EEEEeccc---------ccCCCCCHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence            99999985         466777899998764210 100011112346778899999975   45677777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       156 ral~~~p~  163 (269)
T PRK11831        156 RAIALEPD  163 (269)
T ss_pred             HHHhcCCC
Confidence            99999985

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.87  E-value=3.3e-24  Score=154.09  Aligned_cols=141  Identities=17%  Similarity=0.180  Sum_probs=101.5

Q ss_pred             EEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC-CCceeEEE
Q psy17514          6 MVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG-QAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~~~   77 (159)
                      |+++|+ +.|++ +.++.+++     +++++|+||||||||||+++|+|+++|++|++.+++ .++..... .....++.
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~i~~~~~~~~~~~~~~   79 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNG-QDVSDLRGRAIPYLRRK   79 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EEcccCCHHHHHHHHHh
Confidence            468899 88964 57888887     789999999999999999999999999999998877 33211000 00113457


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      +++++|++         .+++.+|+.+|+.+...  ..........+++.++++.+++..   ..+..+|+ |+   ++|
T Consensus        80 i~~v~q~~---------~~~~~~t~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  148 (214)
T cd03292          80 IGVVFQDF---------RLLPDRNVYENVAFALE--VTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIA  148 (214)
T ss_pred             eEEEecCc---------hhccCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHH
Confidence            99999985         46777899999876422  110011122356788999999865   45677777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       149 ral~~~p~  156 (214)
T cd03292         149 RAIVNSPT  156 (214)
T ss_pred             HHHHcCCC
Confidence            99999986

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.87  E-value=7.4e-24  Score=153.05  Aligned_cols=138  Identities=14%  Similarity=0.197  Sum_probs=99.5

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++.+++     +++++|+||||||||||+++|+|+++|++|++.+++ .++.. .......++.++
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~~~~~~~~~i~   78 (222)
T cd03224           1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG-RDITG-LPPHERARAGIG   78 (222)
T ss_pred             CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEcCC-CCHHHHHhcCeE
Confidence            478899 8998878888887     689999999999999999999999999999999887 33211 010111245699


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhc-Cccc---CCCeeEEe-Ch---hHhH
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSV-NLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +++|++         .+++.+|+.+|+.+...  ..  +.....+++.++++.+ ++..   ..+..+|+ |+   ++|+
T Consensus        79 ~~~q~~---------~~~~~~t~~~~l~~~~~--~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~lar  145 (222)
T cd03224          79 YVPEGR---------RIFPELTVEENLLLGAY--AR--RRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIAR  145 (222)
T ss_pred             Eecccc---------ccCCCCcHHHHHHHHhh--hc--CchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHH
Confidence            999985         46777899999876532  11  1112234566777777 4543   45667777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       146 al~~~p~  152 (222)
T cd03224         146 ALMSRPK  152 (222)
T ss_pred             HHhcCCC
Confidence            9999885

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.6e-23  Score=153.20  Aligned_cols=141  Identities=18%  Similarity=0.186  Sum_probs=102.5

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..+|.+++     |++++|+|+||||||||+++|+|+++|++|++.+++ .++....  ....++.++
T Consensus         3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~~~--~~~~~~~i~   79 (255)
T PRK11231          3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGD-KPISMLS--SRQLARRLA   79 (255)
T ss_pred             EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECC-EEhHHCC--HHHHhhheE
Confidence            789999 9998888899888     689999999999999999999999999999998887 3321100  011245699


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      +++|++         .+++.+|+.+|+.++....  ..........+++.++++.++|..   ..+..+|+ |.   ++|
T Consensus        80 ~~~q~~---------~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  150 (255)
T PRK11231         80 LLPQHH---------LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLA  150 (255)
T ss_pred             EecccC---------CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHH
Confidence            999985         3456678888887642111  110011122456788899999964   45677777 32   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       151 ral~~~p~  158 (255)
T PRK11231        151 MVLAQDTP  158 (255)
T ss_pred             HHHhcCCC
Confidence            99999986

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.86  E-value=1.4e-23  Score=167.74  Aligned_cols=143  Identities=16%  Similarity=0.211  Sum_probs=104.9

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..++++++     |++++|+|||||||||||++|+|+++|++|+|.++| .++.. .......++.+
T Consensus         4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i   81 (501)
T PRK10762          4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG-KEVTF-NGPKSSQEAGI   81 (501)
T ss_pred             eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECCC-CCHHHHHhCCE
Confidence            5899999 9998888899888     789999999999999999999999999999999887 33211 00001123569


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC--CEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN--GSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      ++++|++         .+++.+|+.+|+.++....-...  ......+++.++++.++|..   ..+..+|+ |+   +|
T Consensus        82 ~~v~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  152 (501)
T PRK10762         82 GIIHQEL---------NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEI  152 (501)
T ss_pred             EEEEcch---------hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHH
Confidence            9999985         46777899999987532100000  11112356788999999975   34677777 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |++|+.+|+
T Consensus       153 a~al~~~p~  161 (501)
T PRK10762        153 AKVLSFESK  161 (501)
T ss_pred             HHHHhcCCC
Confidence            999999996

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.8e-23  Score=167.40  Aligned_cols=147  Identities=16%  Similarity=0.226  Sum_probs=106.4

Q ss_pred             CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514          1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      |+...|+++|+ +.|+++.++++++     |++++|+||||||||||+++|+|++.|++|+|.++| .++.. .......
T Consensus         1 ~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g-~~i~~-~~~~~~~   78 (510)
T PRK09700          1 MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN-INYNK-LDHKLAA   78 (510)
T ss_pred             CCCceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECC-EECCC-CCHHHHH
Confidence            44456999999 9998888899888     689999999999999999999999999999999887 23211 0000012


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCE-----EeCHHHHHHHHHhcCccc---CCCeeEEe-
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS-----SVNPKRVSDLFSSVNLNV---NNPHFLIM-  145 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~l~~---~~~~~l~~-  145 (159)
                      +..|++++|++         .+++.+||.+|+.++........+.     ....+++.++++.++|..   ..+..+|+ 
T Consensus        79 ~~~i~~v~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG  149 (510)
T PRK09700         79 QLGIGIIYQEL---------SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSIS  149 (510)
T ss_pred             HCCeEEEeecc---------cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHH
Confidence            34699999985         3667789999987653210000111     112356788999999964   45677877 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +||++|+.+|+
T Consensus       150 ~~qrv~ia~al~~~p~  165 (510)
T PRK09700        150 HKQMLEIAKTLMLDAK  165 (510)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999996

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.1e-23  Score=157.29  Aligned_cols=147  Identities=19%  Similarity=0.275  Sum_probs=104.5

Q ss_pred             CeEEEEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCce
Q psy17514          1 MYIKSMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      |.-..|+++|+ +.|+ +..++++++     |++++|+||||||||||+++|+|+++|++|+|.++| .++.........
T Consensus         1 ~~~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g-~~~~~~~~~~~~   79 (283)
T PRK13636          1 MEDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG-KPIDYSRKGLMK   79 (283)
T ss_pred             CCCceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECC-EECCCCcchHHH
Confidence            44457999999 9996 567888888     789999999999999999999999999999999988 332100000011


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--  147 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--  147 (159)
                      .++.++|+||++..        .+...|+.+|+.++... +.. ......+++.++++.++|..   ..+..+|+ |+  
T Consensus        80 ~~~~ig~v~q~~~~--------~~~~~tv~e~l~~~~~~-~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr  149 (283)
T PRK13636         80 LRESVGMVFQDPDN--------QLFSASVYQDVSFGAVN-LKL-PEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKR  149 (283)
T ss_pred             HHhhEEEEecCcch--------hhccccHHHHHHhHHHH-cCC-CHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHH
Confidence            34679999998521        22235888888764220 100 11122356788899999975   45677777 33  


Q ss_pred             -hHhHhhcCCCC
Q psy17514        148 -RVTKVLNMKPH  158 (159)
Q Consensus       148 -~ia~~l~~~p~  158 (159)
                       .||++|+.+|+
T Consensus       150 l~laraL~~~p~  161 (283)
T PRK13636        150 VAIAGVLVMEPK  161 (283)
T ss_pred             HHHHHHHHcCCC
Confidence             99999999986

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=9.3e-24  Score=158.21  Aligned_cols=143  Identities=18%  Similarity=0.249  Sum_probs=102.3

Q ss_pred             EEEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh--hCCC
Q psy17514          5 SMVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK--NGQA   71 (159)
Q Consensus         5 ~l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~--~~~~   71 (159)
                      .|+++|+ +.|++     ..+|++++     |++++|+||||||||||+++|+|++.|++|+|+++| +++...  ....
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~~~~~   80 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGE-RVITAGKKNKKL   80 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-EECccccccchH
Confidence            4899999 99964     45888888     799999999999999999999999999999999988 332110  0001


Q ss_pred             ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-C
Q psy17514         72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-Q  146 (159)
Q Consensus        72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q  146 (159)
                      ...++.|+|+||++..       .++ ..||.+|+.++... .. .......+++.++++.++|. .   ..+..+|+ |
T Consensus        81 ~~~~~~ig~v~q~~~~-------~l~-~~tv~eni~~~~~~-~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq  150 (290)
T PRK13634         81 KPLRKKVGIVFQFPEH-------QLF-EETVEKDICFGPMN-FG-VSEEDAKQKAREMIELVGLPEELLARSPFELSGGQ  150 (290)
T ss_pred             HHHHhhEEEEeeCchh-------hhh-hhhHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHH
Confidence            1134679999998631       233 35899998765321 00 01112235678899999996 2   45777777 3


Q ss_pred             h---hHhHhhcCCCC
Q psy17514        147 G---RVTKVLNMKPH  158 (159)
Q Consensus       147 ~---~ia~~l~~~p~  158 (159)
                      +   +||++|+.+|+
T Consensus       151 ~qrv~lAraL~~~P~  165 (290)
T PRK13634        151 MRRVAIAGVLAMEPE  165 (290)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            3   99999999996

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.86  E-value=3e-23  Score=148.88  Aligned_cols=135  Identities=21%  Similarity=0.230  Sum_probs=98.2

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..  .+++     +++++|+||||||||||+++|+|+++|++|++.++| .++.. .   ...++.++
T Consensus         1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g-~~~~~-~---~~~~~~i~   73 (211)
T cd03298           1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLING-VDVTA-A---PPADRPVS   73 (211)
T ss_pred             CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEcCc-C---CHhHccEE
Confidence            468889 8887644  2454     789999999999999999999999999999999887 33211 0   11235799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |+   +||++
T Consensus        74 ~~~q~~---------~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~a  142 (211)
T cd03298          74 MLFQEN---------NLFAHLTVEQNVGLGLS--PGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARV  142 (211)
T ss_pred             EEeccc---------ccCCCCcHHHHHhcccc--cccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHH
Confidence            999985         46677899999876532  100111123457888999999974   45677777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       143 l~~~p~  148 (211)
T cd03298         143 LVRDKP  148 (211)
T ss_pred             HhcCCC
Confidence            999986

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.86  E-value=3.6e-23  Score=148.68  Aligned_cols=137  Identities=21%  Similarity=0.240  Sum_probs=99.0

Q ss_pred             EEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          7 VLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         7 ~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      +++|+ +.|++..++++++     +++++|+||||||||||+++|+|+++|++|++.++| .++..       .++.+++
T Consensus         1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~~-------~~~~i~~   72 (213)
T cd03235           1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG-KPLEK-------ERKRIGY   72 (213)
T ss_pred             CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECC-ccHHH-------HHhheEE
Confidence            36788 8898777888887     689999999999999999999999999999999987 33321       2457999


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE--CCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI--NGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      ++|++..       ..+...|+.+|+.++.......  .......+++.++++.+++..   ..+..+|+ |+   +||+
T Consensus        73 v~q~~~~-------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~  145 (213)
T cd03235          73 VPQRRSI-------DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLAR  145 (213)
T ss_pred             ecccccc-------ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHH
Confidence            9998521       0112368888887643210000  011122456788999999964   45677777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       146 al~~~p~  152 (213)
T cd03235         146 ALVQDPD  152 (213)
T ss_pred             HHHcCCC
Confidence            9999986

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.86  E-value=4.5e-22  Score=132.88  Aligned_cols=136  Identities=15%  Similarity=0.204  Sum_probs=107.9

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhhCCCceeEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      +.++|+ ...++...|.+++     +|++.|+||+||||||||..+.|.+.+.   .|++..++ +++..    -...++
T Consensus         3 l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~-~~l~~----lPa~qR   77 (213)
T COG4136           3 LCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE-QRLDM----LPAAQR   77 (213)
T ss_pred             eeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECC-eeccc----cchhhh
Confidence            678888 7777877777777     7999999999999999999999999886   68888776 44321    122578


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      ++++.||++         -+||+++|.+|+.+......  .|. ..++.++..++..+|+.   ..|.++|+ |+   ++
T Consensus        78 q~GiLFQD~---------lLFphlsVg~Nl~fAlp~~~--KG~-aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL  145 (213)
T COG4136          78 QIGILFQDA---------LLFPHLSVGQNLLFALPATL--KGN-ARRNAANAALERSGLDGAFHQDPATLSGGQRARVAL  145 (213)
T ss_pred             heeeeeccc---------ccccccccccceEEecCccc--ccH-HHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHH
Confidence            899999996         58999999999998654223  343 34566788899999975   67899998 76   88


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      -|+|...|+
T Consensus       146 ~R~Lla~Pk  154 (213)
T COG4136         146 LRALLAQPK  154 (213)
T ss_pred             HHHHHhCcc
Confidence            899998886

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=8.1e-24  Score=157.40  Aligned_cols=141  Identities=18%  Similarity=0.249  Sum_probs=102.7

Q ss_pred             EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ +.|+ ...+++++|     |++++|+||||||||||+++|+|+++|++|+|.++| .++..  ......+..
T Consensus         4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~--~~~~~~~~~   80 (274)
T PRK13647          4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMG-REVNA--ENEKWVRSK   80 (274)
T ss_pred             eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECC-EECCC--CCHHHHHhh
Confidence            4899999 9996 567888887     799999999999999999999999999999999987 33210  000112457


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      |+|+||++.        ..+...||.+|+.++... ... ......+++.++++.++|..   ..|..+|+ |+   +||
T Consensus        81 i~~v~q~~~--------~~~~~~tv~e~l~~~~~~-~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~la  150 (274)
T PRK13647         81 VGLVFQDPD--------DQVFSSTVWDDVAFGPVN-MGL-DKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIA  150 (274)
T ss_pred             EEEEecChh--------hhhccCcHHHHHHhhHHH-cCC-CHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHH
Confidence            999999852        123346888988765221 001 11122356788999999965   56778887 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++|+.+|+
T Consensus       151 raL~~~p~  158 (274)
T PRK13647        151 GVLAMDPD  158 (274)
T ss_pred             HHHHcCCC
Confidence            99999996

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.86  E-value=3.2e-23  Score=150.14  Aligned_cols=137  Identities=16%  Similarity=0.179  Sum_probs=101.2

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..++++++     +++++|+||||||||||+++|+|+.+|++|++.+++ .++.....  ...+..+
T Consensus         7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~--~~~~~~i   83 (225)
T PRK10247          7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG-EDISTLKP--EIYRQQV   83 (225)
T ss_pred             eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECC-EEcCcCCH--HHHHhcc
Confidence            4899999 9998888899988     789999999999999999999999999999999887 22211010  1134679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~ia  150 (159)
                      +++||++         .+++ .|+.+|+.+...  +.  +.....+++.++++.+++..    ..+..+|+ |.   +||
T Consensus        84 ~~~~q~~---------~l~~-~tv~enl~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la  149 (225)
T PRK10247         84 SYCAQTP---------TLFG-DTVYDNLIFPWQ--IR--NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLI  149 (225)
T ss_pred             EEEeccc---------cccc-ccHHHHHHhHHh--hc--CCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHH
Confidence            9999985         3455 488888876421  11  11112356778999999952    45667777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       150 ral~~~p~  157 (225)
T PRK10247        150 RNLQFMPK  157 (225)
T ss_pred             HHHhcCCC
Confidence            99999986

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=4.8e-23  Score=152.58  Aligned_cols=142  Identities=13%  Similarity=0.112  Sum_probs=103.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..++++++     |++++|+||||||||||+++|+|+.+|++|+|.++| .++.. ... ...++.+
T Consensus        11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~~-~~~~~~i   87 (265)
T PRK10575         11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA-QPLES-WSS-KAFARKV   87 (265)
T ss_pred             eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECC-Eehhh-CCH-HHHhhhe
Confidence            5899999 9998878899888     689999999999999999999999999999999987 33321 111 1124579


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC--EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING--SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      ++++|++         .+++.+|+.+|+.++........+  .....+++.++++.+++..   ..+..+|+ |.   ++
T Consensus        88 ~~v~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  158 (265)
T PRK10575         88 AYLPQQL---------PAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWI  158 (265)
T ss_pred             EEeccCC---------CCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHH
Confidence            9999984         355667888888764211000000  1122356788999999964   45677777 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |++++.+|+
T Consensus       159 aral~~~p~  167 (265)
T PRK10575        159 AMLVAQDSR  167 (265)
T ss_pred             HHHHhcCCC
Confidence            999999986

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.86  E-value=6.7e-24  Score=159.83  Aligned_cols=132  Identities=14%  Similarity=0.165  Sum_probs=97.5

Q ss_pred             eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCC
Q psy17514         12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSD   86 (159)
Q Consensus        12 ~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~   86 (159)
                      +.|++..+|++++     |++++|+||||||||||+++|+|+++|++|+|+++| .++.. .  ....++.+++++|++ 
T Consensus         1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~--~~~~~~~i~~~~q~~-   75 (302)
T TIGR01188         1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAG-YDVVR-E--PRKVRRSIGIVPQYA-   75 (302)
T ss_pred             CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccc-C--HHHHHhhcEEecCCC-
Confidence            4577777888887     789999999999999999999999999999999987 33211 0  011345799999985 


Q ss_pred             CCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514         87 KKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus        87 ~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                              .+++.+|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |+   ++|++++.+|+
T Consensus        76 --------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~  144 (302)
T TIGR01188        76 --------SVDEDLTGRENLEMMGR--LYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD  144 (302)
T ss_pred             --------CCCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC
Confidence                    46778899999876422  110011222456888999999975   45667777 33   99999999996

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.2e-23  Score=153.43  Aligned_cols=143  Identities=13%  Similarity=0.224  Sum_probs=102.2

Q ss_pred             CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514          1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      |.+..|+++|+ +.|+++.++++++     |++++|+||||||||||+++|+|+++|++|++.++| .++.. .......
T Consensus         1 ~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~~-~~~~~~~   78 (237)
T PRK11614          1 MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDG-KDITD-WQTAKIM   78 (237)
T ss_pred             CCccEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECC-EecCC-CCHHHHH
Confidence            44456999999 9998888888888     789999999999999999999999999999999987 33211 0000112


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhc-Cccc---CCCeeEEe-Ch--
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSV-NLNV---NNPHFLIM-QG--  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~---~~~~~l~~-q~--  147 (159)
                      ++.+++++|++         .+++..|+.+|+.++..  +.  ......+.+.++++.+ ++..   ..+..+|+ |+  
T Consensus        79 ~~~i~~~~q~~---------~~~~~~tv~~~l~~~~~--~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qr  145 (237)
T PRK11614         79 REAVAIVPEGR---------RVFSRMTVEENLAMGGF--FA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQM  145 (237)
T ss_pred             HhCEEEeccCc---------ccCCCCcHHHHHHHhhh--cc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHH
Confidence            45799999985         46666789888876421  11  1111234456666666 3543   45667777 33  


Q ss_pred             -hHhHhhcCCCC
Q psy17514        148 -RVTKVLNMKPH  158 (159)
Q Consensus       148 -~ia~~l~~~p~  158 (159)
                       ++|++++.+|+
T Consensus       146 l~la~al~~~p~  157 (237)
T PRK11614        146 LAIGRALMSQPR  157 (237)
T ss_pred             HHHHHHHHhCCC
Confidence             99999999986

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.9e-23  Score=153.24  Aligned_cols=140  Identities=16%  Similarity=0.211  Sum_probs=101.7

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc-----ccchhhhhHHHHHHhhCCCcee
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ-----VKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~-----~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      |+++|+ ++|++..++.+++     |++++|+|+||||||||+++|+|+++|+     +|+|.++| .++..........
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g-~~~~~~~~~~~~~   80 (247)
T TIGR00972         2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG-QDIYDKKIDVVEL   80 (247)
T ss_pred             EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECC-EEccccccchHHH
Confidence            789999 9998877888887     7899999999999999999999999988     99999887 3321100001113


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCcc----c---CCCeeEEe-
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLN----V---NNPHFLIM-  145 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~---~~~~~l~~-  145 (159)
                      ++.+++++|++         .+++ .|+.+|+.+...  ... .......+++.++++.++|.    .   ..+..+|+ 
T Consensus        81 ~~~i~~v~q~~---------~~~~-~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG  148 (247)
T TIGR00972        81 RRRVGMVFQKP---------NPFP-MSIYDNIAYGPR--LHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGG  148 (247)
T ss_pred             HhheEEEecCc---------ccCC-CCHHHHHHhHHH--hcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHH
Confidence            46799999985         3556 788888876421  110 01122235678889999996    3   45677777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   ++|++++.+|+
T Consensus       149 ~~qrv~laral~~~p~  164 (247)
T TIGR00972       149 QQQRLCIARALAVEPE  164 (247)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999986

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.86  E-value=4.7e-23  Score=152.65  Aligned_cols=143  Identities=15%  Similarity=0.178  Sum_probs=103.5

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      ..|+++|+ ++|++..+|++++     |++++|+|||||||||||++|+|+++|+.|++.++| .++....  ....+..
T Consensus         6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~--~~~~~~~   82 (265)
T PRK10253          6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDG-EHIQHYA--SKEVARR   82 (265)
T ss_pred             cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECC-EEhhhCC--HHHHhhh
Confidence            36899999 9999888899988     689999999999999999999999999999999887 3331101  1112356


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE-ECC-EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM-ING-SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R  148 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~  148 (159)
                      ++|+||++         .+++..++.+|+.++...... ... .....+++.++++.++|..   ..+..+|+ |+   +
T Consensus        83 i~~v~q~~---------~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~  153 (265)
T PRK10253         83 IGLLAQNA---------TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAW  153 (265)
T ss_pred             eEEeeccC---------cCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHH
Confidence            99999985         355567888887654211000 001 1122346788999999964   45677777 33   9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      ||++++.+|+
T Consensus       154 laral~~~p~  163 (265)
T PRK10253        154 IAMVLAQETA  163 (265)
T ss_pred             HHHHHhcCCC
Confidence            9999999986

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.86  E-value=7.7e-24  Score=151.06  Aligned_cols=136  Identities=15%  Similarity=0.173  Sum_probs=108.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++++ |+|+++.+++++|     +++.+++|||||||||++++|.+++.|++|.|.++| .++.+      ..+.+|
T Consensus         2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g-~~~~~------~~~~rI   74 (300)
T COG4152           2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG-GPLSQ------EIKNRI   74 (300)
T ss_pred             ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcC-cchhh------hhhhhc
Confidence            3799999 9999999999998     689999999999999999999999999999999998 44322      245689


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe--Ch--hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM--QG--RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~--q~--~ia~  151 (159)
                      +|.++..         .+|+.+||.+.+.+...  .....+.+.++++..||+.+++..   +....||-  |+  ++-.
T Consensus        75 GyLPEER---------GLy~k~tv~dql~yla~--LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfis  143 (300)
T COG4152          75 GYLPEER---------GLYPKMTVEDQLKYLAE--LKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFIS  143 (300)
T ss_pred             ccChhhh---------ccCccCcHHHHHHHHHH--hcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHH
Confidence            9999874         69999999999887533  222223445678899999999976   23345555  43  7778


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       144 aviHePe  150 (300)
T COG4152         144 AVIHEPE  150 (300)
T ss_pred             HHhcCCC
Confidence            8888886

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.86  E-value=8.2e-23  Score=145.67  Aligned_cols=132  Identities=16%  Similarity=0.123  Sum_probs=101.1

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++.+++     +++++|+|+||||||||+++|+|+++|++|++.+++ .++.. .  ....++.++
T Consensus         1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~-~--~~~~~~~i~   76 (201)
T cd03231           1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG-GPLDF-Q--RDSIARGLL   76 (201)
T ss_pred             CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-Eeccc-c--cHHhhhheE
Confidence            478899 8998888888887     789999999999999999999999999999999887 33211 1  112356799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++..|+.+|+.+...  .      ...+++.++++.+++..   ..+..+|+ |+   ++|++
T Consensus        77 ~~~q~~---------~~~~~~tv~e~l~~~~~--~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara  139 (201)
T cd03231          77 YLGHAP---------GIKTTLSVLENLRFWHA--D------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARL  139 (201)
T ss_pred             Eecccc---------ccCCCcCHHHHHHhhcc--c------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHH
Confidence            999875         35566788888876421  1      13467888999999964   34567776 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       140 l~~~p~  145 (201)
T cd03231         140 LLSGRP  145 (201)
T ss_pred             HhcCCC
Confidence            999986

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.86  E-value=3.8e-23  Score=165.52  Aligned_cols=137  Identities=13%  Similarity=0.141  Sum_probs=104.5

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..+|++++     |++++|+|||||||||||++|+|+++|++|+|.++| .++.. .......+..+
T Consensus        11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i   88 (510)
T PRK15439         11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG-NPCAR-LTPAKAHQLGI   88 (510)
T ss_pred             eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECCC-CCHHHHHhCCE
Confidence            5899999 9999888899888     789999999999999999999999999999998877 22210 00001123469


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +|++|++         .+++.+|+.+|+.++..      ......+++.++++.++|..   ..+..||+ |+   +||+
T Consensus        89 ~~v~q~~---------~~~~~~tv~e~l~~~~~------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~  153 (510)
T PRK15439         89 YLVPQEP---------LLFPNLSVKENILFGLP------KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILR  153 (510)
T ss_pred             EEEeccC---------ccCCCCcHHHHhhcccc------cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHH
Confidence            9999985         46777899999877532      11223467888999999975   45667777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       154 aL~~~p~  160 (510)
T PRK15439        154 GLMRDSR  160 (510)
T ss_pred             HHHcCCC
Confidence            9999986

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.86  E-value=2.8e-23  Score=151.89  Aligned_cols=143  Identities=17%  Similarity=0.246  Sum_probs=103.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..++.+++     +++++|+|||||||||||++|+|+++|++|++.+++ .++.. .......+..+
T Consensus         2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i   79 (242)
T TIGR03411         2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG-TDLTG-LPEHQIARAGI   79 (242)
T ss_pred             eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-eecCC-CCHHHHHhcCe
Confidence            3789999 9998878888888     689999999999999999999999999999999988 33211 01011123569


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE----EECC--EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch-
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY----MING--SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-  147 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~----~~~~--~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-  147 (159)
                      ++++|++         .+++.+|+.+|+.+......    ...+  .....+++.++++.+++..   ..+..+|+ |. 
T Consensus        80 ~~~~q~~---------~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~q  150 (242)
T TIGR03411        80 GRKFQKP---------TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQ  150 (242)
T ss_pred             eEecccc---------ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence            9999985         46777899988876421000    0000  1123456788999999975   34566776 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        ++|++++.+|+
T Consensus       151 rv~laral~~~p~  163 (242)
T TIGR03411       151 WLEIGMLLMQDPK  163 (242)
T ss_pred             HHHHHHHHhcCCC
Confidence              99999999986

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.86  E-value=3.1e-23  Score=159.18  Aligned_cols=133  Identities=16%  Similarity=0.153  Sum_probs=98.0

Q ss_pred             Ce-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCceeEEEEEEE
Q psy17514         10 GF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAGVTKASVTLT   81 (159)
Q Consensus        10 ~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~i~~v   81 (159)
                      |+ ++|++..+  +++     +++++|+|||||||||||++|+|+++|++|+|.++| +++.....  .....++.++++
T Consensus         4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g-~~i~~~~~~~~~~~~~~~i~~v   80 (354)
T TIGR02142         4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG-RTLFDSRKGIFLPPEKRRIGYV   80 (354)
T ss_pred             EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECccCccccccchhhCCeEEE
Confidence            67 88876543  555     789999999999999999999999999999999887 33321100  011234679999


Q ss_pred             EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhc
Q psy17514         82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLN  154 (159)
Q Consensus        82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~  154 (159)
                      ||++         .+++++|+.+|+.++..  .  .......+++.++++.++|..   ..+..+|+ |+   +|||+|+
T Consensus        81 ~q~~---------~l~~~~tv~enl~~~~~--~--~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~  147 (354)
T TIGR02142        81 FQEA---------RLFPHLSVRGNLRYGMK--R--ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALL  147 (354)
T ss_pred             ecCC---------ccCCCCcHHHHHHHHhh--c--cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence            9985         57888899999987532  1  111222456889999999975   46778887 33   9999999


Q ss_pred             CCCC
Q psy17514        155 MKPH  158 (159)
Q Consensus       155 ~~p~  158 (159)
                      .+|+
T Consensus       148 ~~p~  151 (354)
T TIGR02142       148 SSPR  151 (354)
T ss_pred             cCCC
Confidence            9986

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.86  E-value=1.8e-23  Score=154.21  Aligned_cols=147  Identities=18%  Similarity=0.255  Sum_probs=105.9

Q ss_pred             CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHH--------
Q psy17514          1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIY--------   66 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~--------   66 (159)
                      |.-..|+++|+ +.|+++.++++++     +++++|+|+||||||||+++|+|+++|++|++.+++ .++..        
T Consensus         1 ~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~~~~~~~   79 (257)
T PRK10619          1 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNG-QTINLVRDKDGQL   79 (257)
T ss_pred             CCCccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EEccccccccccc
Confidence            33456899999 9998888888887     789999999999999999999999999999999887 22210        


Q ss_pred             --hh-CCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CC
Q psy17514         67 --KN-GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NN  139 (159)
Q Consensus        67 --~~-~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~  139 (159)
                        .. ......++.++|++|++         .+++.+|+.+|+.++... +.........+++.++++.+++..    ..
T Consensus        80 ~~~~~~~~~~~~~~i~~v~q~~---------~l~~~~sv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~  149 (257)
T PRK10619         80 KVADKNQLRLLRTRLTMVFQHF---------NLWSHMTVLENVMEAPIQ-VLGLSKQEARERAVKYLAKVGIDERAQGKY  149 (257)
T ss_pred             ccccchHHHHHhhceEEEecCc---------ccCCCCcHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence              00 00112356799999985         466778999998653210 110011223456788999999964    34


Q ss_pred             CeeEEe-Ch---hHhHhhcCCCC
Q psy17514        140 PHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       140 ~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      +..+|+ |+   ++||+|+.+|+
T Consensus       150 ~~~LS~G~~qrv~laral~~~p~  172 (257)
T PRK10619        150 PVHLSGGQQQRVSIARALAMEPE  172 (257)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCC
Confidence            567777 33   99999999986

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.86  E-value=8.2e-24  Score=151.75  Aligned_cols=139  Identities=25%  Similarity=0.301  Sum_probs=98.6

Q ss_pred             EEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          7 VLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         7 ~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      +++|+ +.|++  ..++.+++     +++++|+||||||||||+++|+|+++|++|+|.+++ .++.. .. ....++.+
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~-~~-~~~~~~~i   77 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG-KDLTK-LS-LKELRRKV   77 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EEccc-CC-HHHHHhhc
Confidence            36788 88877  67888887     689999999999999999999999999999999887 33211 00 11134679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +|++|++.        ..++.+|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |+   ++|+
T Consensus        78 ~~~~q~~~--------~~~~~~t~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar  147 (211)
T cd03225          78 GLVFQNPD--------DQFFGPTVEEEVAFGLE--NLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAG  147 (211)
T ss_pred             eEEecChh--------hhcCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence            99999852        12445688888865321  100011122356788999999964   45677777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       148 al~~~p~  154 (211)
T cd03225         148 VLAMDPD  154 (211)
T ss_pred             HHhcCCC
Confidence            9999986

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.86  E-value=4.4e-24  Score=148.03  Aligned_cols=141  Identities=16%  Similarity=0.211  Sum_probs=104.9

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      ++++|+ |.|++..+++++|     +++++|+|||||||||||.+++.+++.++|++.++| .++...+.  ....+.++
T Consensus         2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g-~~~~~~~s--~~LAk~lS   78 (252)
T COG4604           2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG-LELTSTPS--KELAKKLS   78 (252)
T ss_pred             eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEee-eecccCCh--HHHHHHHH
Confidence            789999 9999999999998     789999999999999999999999999999999998 34432111  11234566


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +.-|..         .+...+||++-+.||.-++.+..-..++...+++.++.++|..   ++..+||+ |+   -||++
T Consensus        79 ILkQ~N---------~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMV  149 (252)
T COG4604          79 ILKQEN---------HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMV  149 (252)
T ss_pred             HHHhhc---------hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhhee
Confidence            666653         3455789999999875433221122344567888888888876   56778888 54   77888


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+.+
T Consensus       150 laQdTd  155 (252)
T COG4604         150 LAQDTD  155 (252)
T ss_pred             eeccCc
Confidence            777643

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.86  E-value=3.3e-23  Score=147.99  Aligned_cols=135  Identities=11%  Similarity=0.104  Sum_probs=102.5

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|+...++.+++     +++++|+||||||||||+++|+|+++|++|+|.+++ .++.. .  ....++.++
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g-~~~~~-~--~~~~~~~~~   77 (204)
T PRK13538          2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG-EPIRR-Q--RDEYHQDLL   77 (204)
T ss_pred             eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEccc-c--hHHhhhheE
Confidence            789999 9998888888888     689999999999999999999999999999999887 22211 0  011245688


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|.+         .+++.+|+.+|+.+...  ..  +. ...+++.++++.++|..   ..+..+|+ |+   ++|++
T Consensus        78 ~~~~~~---------~~~~~~tv~e~l~~~~~--~~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~a  143 (204)
T PRK13538         78 YLGHQP---------GIKTELTALENLRFYQR--LH--GP-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARL  143 (204)
T ss_pred             EeCCcc---------ccCcCCcHHHHHHHHHH--hc--Cc-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHH
Confidence            998874         35667799999876532  11  11 23467888999999964   45667777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       144 l~~~p~  149 (204)
T PRK13538        144 WLTRAP  149 (204)
T ss_pred             HhcCCC
Confidence            999986

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=3e-23  Score=152.83  Aligned_cols=143  Identities=14%  Similarity=0.236  Sum_probs=102.8

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..++.+++     |++++|+||||||||||+++|+|+++|++|++.++| .++.. .......+..+
T Consensus         5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~~~~~~~~~i   82 (255)
T PRK11300          5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG-QHIEG-LPGHQIARMGV   82 (255)
T ss_pred             eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECC-EECCC-CCHHHHHhcCe
Confidence            5899999 9998888889888     789999999999999999999999999999999887 22211 00011123458


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE---------EE---EC-CEEeCHHHHHHHHHhcCccc---CCCee
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR---------YM---IN-GSSVNPKRVSDLFSSVNLNV---NNPHF  142 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~---------~~---~~-~~~~~~~~~~~~l~~~~l~~---~~~~~  142 (159)
                      +++||++         .+++.+|+.+|+.++....         +.   .. ......+++.++++.++|..   ..+..
T Consensus        83 ~~~~q~~---------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~  153 (255)
T PRK11300         83 VRTFQHV---------RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGN  153 (255)
T ss_pred             EEeccCc---------ccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhh
Confidence            8899985         4677789999887642100         00   00 00112246778899999865   45677


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   +||++++.+|+
T Consensus       154 LS~G~~qrv~la~al~~~p~  173 (255)
T PRK11300        154 LAYGQQRRLEIARCMVTQPE  173 (255)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            777 33   99999999996

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.86  E-value=5.8e-23  Score=151.62  Aligned_cols=136  Identities=18%  Similarity=0.174  Sum_probs=98.9

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..+|++++     |++++|+||||||||||+++|+|+++|++|+|.+++ .++.. .. ....++.++
T Consensus         3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g-~~~~~-~~-~~~~~~~i~   79 (258)
T PRK13548          3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNG-RPLAD-WS-PAELARRRA   79 (258)
T ss_pred             EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC-EEccc-CC-HHHhhhheE
Confidence            789999 9998888899888     689999999999999999999999999999999887 33211 01 011245799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.++... .. .......+.+.++++.++|..   ..+..+|+ |+   +||++
T Consensus        80 ~~~q~~---------~~~~~~tv~e~l~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~a  148 (258)
T PRK13548         80 VLPQHS---------SLSFPFTVEEVVAMGRAP-HG-LSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARV  148 (258)
T ss_pred             EEccCC---------cCCCCCCHHHHHHhhhcc-cC-CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHH
Confidence            999985         344557888888764221 10 011122356788899999964   45677777 33   99999


Q ss_pred             hcC
Q psy17514        153 LNM  155 (159)
Q Consensus       153 l~~  155 (159)
                      ++.
T Consensus       149 l~~  151 (258)
T PRK13548        149 LAQ  151 (258)
T ss_pred             Hhc
Confidence            994

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.6e-23  Score=154.43  Aligned_cols=141  Identities=19%  Similarity=0.243  Sum_probs=102.5

Q ss_pred             EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ +.|+  +..++++++     |++++|+||||||||||+++|+|+++|++|+|.++| .++.. .. ....++
T Consensus         7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-~~i~~-~~-~~~~~~   83 (271)
T PRK13632          7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-ITISK-EN-LKEIRK   83 (271)
T ss_pred             EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EecCc-CC-HHHHhc
Confidence            5899999 9995  456888887     789999999999999999999999999999999987 33211 01 112356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      .++|++|++.        ..++.+|+.+|+.++..  ..........+++.++++.++|..   ..+..+|+ |+   +|
T Consensus        84 ~i~~v~q~~~--------~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l  153 (271)
T PRK13632         84 KIGIIFQNPD--------NQFIGATVEDDIAFGLE--NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAI  153 (271)
T ss_pred             ceEEEEeCHH--------HhcCcccHHHHHHhHHH--HcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHH
Confidence            7999999852        24556799999876421  110011112345788899999964   45677777 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |++++.+|+
T Consensus       154 aral~~~p~  162 (271)
T PRK13632        154 ASVLALNPE  162 (271)
T ss_pred             HHHHHcCCC
Confidence            999999985

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.1e-23  Score=155.42  Aligned_cols=141  Identities=20%  Similarity=0.256  Sum_probs=101.1

Q ss_pred             EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ +.|+ ...++++++     |++++|+|+||||||||+++|+|+++|++|+++++| .++.. .. ....+..
T Consensus         3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~-~~~~~~~   79 (277)
T PRK13652          3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRG-EPITK-EN-IREVRKF   79 (277)
T ss_pred             eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EECCc-CC-HHHHHhh
Confidence            4899999 9995 456888887     789999999999999999999999999999999987 33211 00 1113467


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      +++++|++..        .+...|+.+|+.++..  ..........+++.++++.++|..   ..+..+|+ |+   .+|
T Consensus        80 i~~v~q~~~~--------~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~la  149 (277)
T PRK13652         80 VGLVFQNPDD--------QIFSPTVEQDIAFGPI--NLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIA  149 (277)
T ss_pred             eEEEecCccc--------ccccccHHHHHHhHHH--HcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHH
Confidence            9999998521        1223588888865422  110111122356788999999964   45777777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++|+.+|+
T Consensus       150 raL~~~p~  157 (277)
T PRK13652        150 GVIAMEPQ  157 (277)
T ss_pred             HHHHcCCC
Confidence            99999996

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=3e-23  Score=151.73  Aligned_cols=143  Identities=17%  Similarity=0.236  Sum_probs=102.9

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--C--CCcee
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--G--QAGVT   74 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~--~~~~~   74 (159)
                      .|+++|+ +.|+++.++.+++     +++++|+||||||||||+++|+|+..|++|+|.++| .++....  .  .....
T Consensus         2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~   80 (242)
T PRK11124          2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG-NHFDFSKTPSDKAIREL   80 (242)
T ss_pred             EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EecccccccchhhHHHH
Confidence            3789999 9998888899888     789999999999999999999999999999999987 3321000  0  00112


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---  147 (159)
                      +..|++++|++         .+++.+|+.+|+..... ...........+++.++++.+++..   ..+..+|+ |+   
T Consensus        81 ~~~i~~~~q~~---------~~~~~~tv~e~i~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv  150 (242)
T PRK11124         81 RRNVGMVFQQY---------NLWPHLTVQQNLIEAPC-RVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRV  150 (242)
T ss_pred             HhheEEEecCc---------cccCCCcHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence            45799999985         46677899988864211 0100011122356788899999965   45677777 33   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      ++|++++.+|+
T Consensus       151 ~laral~~~p~  161 (242)
T PRK11124        151 AIARALMMEPQ  161 (242)
T ss_pred             HHHHHHhcCCC
Confidence            99999999986

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.7e-23  Score=152.63  Aligned_cols=144  Identities=16%  Similarity=0.188  Sum_probs=102.3

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCc
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAG   72 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~   72 (159)
                      ..|+++|+ +.|++..+|++++     |++++|+|||||||||||++|+|++.|     ++|+|.++| .++........
T Consensus         3 ~~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g-~~~~~~~~~~~   81 (258)
T PRK14241          3 KRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG-EDLYGPGVDPV   81 (258)
T ss_pred             ccEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC-EeccccccChH
Confidence            46899999 9998878888887     789999999999999999999999874     699999987 33211000011


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc----c---CCCeeEEe
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN----V---NNPHFLIM  145 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~---~~~~~l~~  145 (159)
                      ..++.+++++|++         .+++.+|+.+|+.++... ..........+.+.++++.+++.    .   ..+..+|+
T Consensus        82 ~~~~~i~~~~q~~---------~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  151 (258)
T PRK14241         82 AVRRTIGMVFQRP---------NPFPTMSIRDNVVAGLKL-NGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSG  151 (258)
T ss_pred             HHhcceEEEcccc---------ccCCCCcHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence            1356799999985         466778999998764220 10001122234677888888873    1   44567777


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   +||++++.+|+
T Consensus       152 G~~qrv~laral~~~p~  168 (258)
T PRK14241        152 GQQQRLCIARAIAVEPD  168 (258)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence             33   99999999986

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=6.1e-23  Score=157.44  Aligned_cols=132  Identities=14%  Similarity=0.185  Sum_probs=100.1

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCceeEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~   77 (159)
                      |++ |+ ++|++..+  +++     +++++|+|||||||||||++|+|+++|++|+|.++| +++.....  .....++.
T Consensus         2 l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g-~~~~~~~~~~~~~~~~~~   77 (352)
T PRK11144          2 LEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNG-RVLFDAEKGICLPPEKRR   77 (352)
T ss_pred             eEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccccccccccchhhCC
Confidence            677 88 89987542  455     789999999999999999999999999999999887 33211000  01113567


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      ++|+||++         .+++++|+.+|+.++..        ....+++.++++.++|..   ..+..||+ |+   +||
T Consensus        78 i~~v~q~~---------~l~~~~tv~enl~~~~~--------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvala  140 (352)
T PRK11144         78 IGYVFQDA---------RLFPHYKVRGNLRYGMA--------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIG  140 (352)
T ss_pred             EEEEcCCc---------ccCCCCcHHHHHHhhhh--------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHH
Confidence            99999985         57888999999987532        123467889999999975   56788888 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      |+|+.+|+
T Consensus       141 raL~~~p~  148 (352)
T PRK11144        141 RALLTAPE  148 (352)
T ss_pred             HHHHcCCC
Confidence            99999986

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.86  E-value=9.8e-23  Score=145.14  Aligned_cols=133  Identities=12%  Similarity=0.140  Sum_probs=100.9

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++.+++.+++     +++++|+||||||||||+++|+|+.+|++|+++++| .++.. .  ....++.++
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g-~~~~~-~--~~~~~~~i~   77 (200)
T PRK13540          2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER-QSIKK-D--LCTYQKQLC   77 (200)
T ss_pred             EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECC-Ccccc-C--HHHHHhheE
Confidence            789999 9998888899888     789999999999999999999999999999999987 33211 1  111346799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--C-CCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--N-NPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~-~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++..|+.+|+.++..  .   ..  ....+.++++.+++..  + .+..+|+ |.   ++|++
T Consensus        78 ~~~q~~---------~~~~~~tv~~~~~~~~~--~---~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~lara  141 (200)
T PRK13540         78 FVGHRS---------GINPYLTLRENCLYDIH--F---SP--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRL  141 (200)
T ss_pred             Eecccc---------ccCcCCCHHHHHHHHHh--c---Cc--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHH
Confidence            999874         35566789998876421  1   11  2346788999998864  3 3456666 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       142 l~~~p~  147 (200)
T PRK13540        142 WMSKAK  147 (200)
T ss_pred             HhcCCC
Confidence            999996

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.86  E-value=6.4e-23  Score=151.37  Aligned_cols=147  Identities=15%  Similarity=0.184  Sum_probs=102.5

Q ss_pred             EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHH-----HHHhhCCC
Q psy17514          3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQE-----LIYKNGQA   71 (159)
Q Consensus         3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~-----~~~~~~~~   71 (159)
                      ...|+++|+ +.|+++.++.+++     |++++|+||||||||||+++|+|+++|++|+|.+++ ++     +.......
T Consensus         4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~~~i~~~~~~~   82 (258)
T PRK11701          4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM-RDGQLRDLYALSEAE   82 (258)
T ss_pred             CceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC-ccccccccccCCHHH
Confidence            346999999 9998888888887     789999999999999999999999999999999887 33     21100000


Q ss_pred             --ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe
Q psy17514         72 --GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM  145 (159)
Q Consensus        72 --~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~  145 (159)
                        ...+..++|++|++.       ..+++.+++.+|+...... +.........+++.++++.+++..    ..+..+|+
T Consensus        83 ~~~~~~~~i~~v~q~~~-------~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~  154 (258)
T PRK11701         83 RRRLLRTEWGFVHQHPR-------DGLRMQVSAGGNIGERLMA-VGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSG  154 (258)
T ss_pred             HHHHhhcceEEEeeCcc-------cccCccccHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCH
Confidence              002456999999862       1245556777776532110 100011122456788999999952    45677777


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   +|||+++.+|+
T Consensus       155 Gq~qrl~laral~~~p~  171 (258)
T PRK11701        155 GMQQRLQIARNLVTHPR  171 (258)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence             33   99999999986

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.6e-23  Score=156.35  Aligned_cols=145  Identities=19%  Similarity=0.208  Sum_probs=103.6

Q ss_pred             CeEEEEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcc---cchhhhhHHHHHHhhC
Q psy17514          1 MYIKSMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQV---KQVRANTLQELIYKNG   69 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~---g~i~~~~~~~~~~~~~   69 (159)
                      |+-..|+++|+ +.|++  ..++.+++     +++++|+||||||||||+++|+|++.|+.   |+|.++| .++..  .
T Consensus         1 ~~~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g-~~~~~--~   77 (282)
T PRK13640          1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTA--K   77 (282)
T ss_pred             CCCceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECC-EECCc--C
Confidence            44346899999 99964  45788887     78999999999999999999999999987   8998887 33211  0


Q ss_pred             CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-
Q psy17514         70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-  145 (159)
Q Consensus        70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-  145 (159)
                      .....+..++++||++.        ..++..|+.+|+.+...  ..........+++.++++.++|..   ..|..+|+ 
T Consensus        78 ~~~~~~~~ig~v~q~~~--------~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G  147 (282)
T PRK13640         78 TVWDIREKVGIVFQNPD--------NQFVGATVGDDVAFGLE--NRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGG  147 (282)
T ss_pred             CHHHHHhheEEEEECHH--------HhhccCCHHHHHHhhHH--hCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHH
Confidence            00112457999999852        23455789999876422  110011122356788999999975   46777877 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +||++++.+|+
T Consensus       148 ~~qrv~laral~~~P~  163 (282)
T PRK13640        148 QKQRVAIAGILAVEPK  163 (282)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            33   99999999996

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.7e-23  Score=155.46  Aligned_cols=142  Identities=15%  Similarity=0.176  Sum_probs=98.2

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++.+++     |++++|+|||||||||||++|+|+++|++|+|.++| +++..........++.++
T Consensus         2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~~~~~~~~~i~   80 (271)
T PRK13638          2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG-KPLDYSKRGLLALRQQVA   80 (271)
T ss_pred             eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECC-EEcccccCCHHHHHhheE
Confidence            789999 9998877888887     789999999999999999999999999999999987 332100000011245799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++..        .+...++.+|+.+...  ..........+++.++++.+++..   ..+..+|+ |+   +||++
T Consensus        81 ~v~q~~~~--------~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~lara  150 (271)
T PRK13638         81 TVFQDPEQ--------QIFYTDIDSDIAFSLR--NLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGA  150 (271)
T ss_pred             EEeeChhh--------ccccccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHH
Confidence            99998521        1222356666654321  100011112345678899999864   34567777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       151 L~~~p~  156 (271)
T PRK13638        151 LVLQAR  156 (271)
T ss_pred             HHcCCC
Confidence            999986

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.9e-23  Score=154.39  Aligned_cols=141  Identities=20%  Similarity=0.241  Sum_probs=101.0

Q ss_pred             EEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      |+++|+ +.|+ ...+|.+++     |++++|+|||||||||||++|+|+++|++|+|+++| .++.. .......++.+
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i   79 (274)
T PRK13644          2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG-IDTGD-FSKLQGIRKLV   79 (274)
T ss_pred             EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EECCc-cccHHHHHhhe
Confidence            789999 9995 466888888     789999999999999999999999999999999987 33211 00001134679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      ++++|++.        ..+...|+.+|+.+.... .. .......+++.++++.++|..   ..+..+|+ |+   .||+
T Consensus        80 ~~v~q~~~--------~~~~~~tv~enl~~~~~~-~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar  149 (274)
T PRK13644         80 GIVFQNPE--------TQFVGRTVEEDLAFGPEN-LC-LPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAG  149 (274)
T ss_pred             EEEEEChh--------hhcccchHHHHHHhhHHH-cC-CCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHH
Confidence            99999862        123446888888764321 10 011122356788899999965   45667777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       150 al~~~p~  156 (274)
T PRK13644        150 ILTMEPE  156 (274)
T ss_pred             HHHcCCC
Confidence            9999996

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.1e-23  Score=156.05  Aligned_cols=142  Identities=17%  Similarity=0.279  Sum_probs=101.8

Q ss_pred             EEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCc
Q psy17514          6 MVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAG   72 (159)
Q Consensus         6 l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~   72 (159)
                      |+++|+ +.|++     ..+|++++     |++++|+||||||||||+++|+|++.|+.|+|.++| .++.....  ...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g-~~i~~~~~~~~~~   81 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDD-ITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EECccccccchHH
Confidence            789999 99964     35888888     789999999999999999999999999999999987 33211000  001


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG  147 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~  147 (159)
                      ..++.|+++||++..       .+++ .|+.+|+.++... ... ......+++.++++.++|. .   ..+..+|+ |+
T Consensus        82 ~~~~~ig~v~q~~~~-------~l~~-~tv~e~i~~~~~~-~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~  151 (286)
T PRK13646         82 PVRKRIGMVFQFPES-------QLFE-DTVEREIIFGPKN-FKM-NLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQM  151 (286)
T ss_pred             HHHhheEEEecChHh-------ccch-hhHHHHHHhhHHH-cCC-CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence            235679999998531       2333 3888888765321 000 1112345678899999996 3   45778877 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         +||++|+.+|+
T Consensus       152 qrv~laraL~~~p~  165 (286)
T PRK13646        152 RKIAIVSILAMNPD  165 (286)
T ss_pred             HHHHHHHHHHhCCC
Confidence               99999999996

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=9e-23  Score=151.29  Aligned_cols=142  Identities=15%  Similarity=0.162  Sum_probs=101.0

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..+|++++     |++++|+||||||||||+++|+|+.+|     ++|+|.++| .++.........
T Consensus        19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g-~~i~~~~~~~~~   97 (267)
T PRK14235         19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG-EDIYDPRLDVVE   97 (267)
T ss_pred             eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC-EECcccccchHH
Confidence            5899999 9998888888887     799999999999999999999999874     799999887 332110000112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC-CEEeCHHHHHHHHHhcCccc-------CCCeeEEe
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN-GSSVNPKRVSDLFSSVNLNV-------NNPHFLIM  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~  145 (159)
                      .++.+++++|++         .+++. |+.+|+.++... .... ......+++.++++.++|..       ..+..+|+
T Consensus        98 ~~~~i~~v~q~~---------~~~~~-tv~enl~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  166 (267)
T PRK14235         98 LRARVGMVFQKP---------NPFPK-SIYENVAYGPRI-HGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSG  166 (267)
T ss_pred             HhhceEEEecCC---------CCCCC-cHHHHHHHHHHh-cccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH
Confidence            356799999985         34553 888888764320 0000 11122356788899999842       34667777


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   +||++++.+|+
T Consensus       167 Gq~qrv~laral~~~p~  183 (267)
T PRK14235        167 GQQQRLCIARAIAVSPE  183 (267)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence             33   99999999986

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.85  E-value=1.8e-23  Score=155.19  Aligned_cols=140  Identities=18%  Similarity=0.242  Sum_probs=100.8

Q ss_pred             EEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC--ceeEEEE
Q psy17514          7 VLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA--GVTKASV   78 (159)
Q Consensus         7 ~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~~~i   78 (159)
                      .++|+ +.|++..++.+++     +++++|+||||||||||+++|+|+++|++|+|.++| .++.......  ...+..+
T Consensus        26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g-~~~~~~~~~~~~~~~~~~i  104 (269)
T cd03294          26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDG-QDIAAMSRKELRELRRKKI  104 (269)
T ss_pred             hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC-EEccccChhhhhhhhcCcE
Confidence            45677 8888888888887     789999999999999999999999999999999887 3321100000  0113579


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      ++++|++         .+++.+|+.+|+.++..  ..........+++.++++.++|..   ..+..+|+ |+   +||+
T Consensus       105 ~~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAr  173 (269)
T cd03294         105 SMVFQSF---------ALLPHRTVLENVAFGLE--VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLAR  173 (269)
T ss_pred             EEEecCc---------ccCCCCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHH
Confidence            9999985         46667899999876421  110011222356788999999964   45677777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       174 al~~~p~  180 (269)
T cd03294         174 ALAVDPD  180 (269)
T ss_pred             HHhcCCC
Confidence            9999986

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3e-23  Score=153.95  Aligned_cols=145  Identities=18%  Similarity=0.242  Sum_probs=101.8

Q ss_pred             CeEEEEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCc
Q psy17514          1 MYIKSMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAG   72 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~   72 (159)
                      |+...|+++|+ +.|++  ..++.+++     +++++|+||||||||||+++|+|+++|++|+|+++| .++.. .. ..
T Consensus         3 ~~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g-~~~~~-~~-~~   79 (269)
T PRK13648          3 DKNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNN-QAITD-DN-FE   79 (269)
T ss_pred             CCCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EECCc-CC-HH
Confidence            33446999999 99975  34788877     789999999999999999999999999999999987 33211 00 01


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch-
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-  147 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-  147 (159)
                      ..++.+++++|++.        .+++..++.+|+.++..  ..........+++.++++.+++..   ..+..+|+ |+ 
T Consensus        80 ~~~~~i~~v~q~~~--------~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  149 (269)
T PRK13648         80 KLRKHIGIVFQNPD--------NQFVGSIVKYDVAFGLE--NHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQ  149 (269)
T ss_pred             HHHhheeEEEeChH--------HhcccccHHHHHHhhHH--hcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHH
Confidence            13457999999852        23444567777665421  100011122346778899999864   45667777 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        +||++++.+|+
T Consensus       150 rl~laral~~~p~  162 (269)
T PRK13648        150 RVAIAGVLALNPS  162 (269)
T ss_pred             HHHHHHHHHcCCC
Confidence              99999999986

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.85  E-value=9.9e-23  Score=150.66  Aligned_cols=144  Identities=13%  Similarity=0.173  Sum_probs=103.6

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhh---CCCc
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKN---GQAG   72 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~---~~~~   72 (159)
                      .|+++|+ +.|++..++++++     |++++|+||||||||||+++|+|++.|+   +|+|.++| .++....   ....
T Consensus         4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g-~~~~~~~~~~~~~~   82 (262)
T PRK09984          4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLG-RTVQREGRLARDIR   82 (262)
T ss_pred             EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECC-EecccccccchhHH
Confidence            5899999 9998888899888     7899999999999999999999999876   48999888 3321100   0001


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC----C--EEeCHHHHHHHHHhcCccc---CCCeeE
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN----G--SSVNPKRVSDLFSSVNLNV---NNPHFL  143 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~----~--~~~~~~~~~~~l~~~~l~~---~~~~~l  143 (159)
                      ..++.++++||++         .+++.+|+.+|+.++........    +  .....+++.++++.+++..   ..+..+
T Consensus        83 ~~~~~i~~~~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  153 (262)
T PRK09984         83 KSRANTGYIFQQF---------NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL  153 (262)
T ss_pred             HHHhheEEEcccc---------ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence            1245799999985         45677899888876421100000    0  1122456888999999964   456777


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   ++|++++.+|+
T Consensus       154 S~G~~qrv~laral~~~p~  172 (262)
T PRK09984        154 SGGQQQRVAIARALMQQAK  172 (262)
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            77 33   99999999986

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.85  E-value=7.5e-23  Score=145.52  Aligned_cols=134  Identities=16%  Similarity=0.166  Sum_probs=100.7

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++++++     +++++|+||||||||||+++|+|+++|++|++.+++ .++... .  ...++.++
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~-~--~~~~~~i~   76 (198)
T TIGR01189         1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG-TALAEQ-R--DEPHRNIL   76 (198)
T ss_pred             CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC-EEcccc-h--HHhhhheE
Confidence            468899 8998888888887     789999999999999999999999999999999887 332111 1  11345789


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|.+         .+++.+|+.+|+.+...  ..  ..  ..+.+.++++.+++..   ..+..+|+ |+   ++|++
T Consensus        77 ~~~q~~---------~~~~~~tv~~~l~~~~~--~~--~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a  141 (198)
T TIGR01189        77 YLGHLP---------GLKPELSALENLHFWAA--IH--GG--AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARL  141 (198)
T ss_pred             EeccCc---------ccccCCcHHHHHHHHHH--Hc--CC--cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHH
Confidence            999874         35666789888865421  11  11  1356788999999975   45677777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       142 l~~~p~  147 (198)
T TIGR01189       142 WLSRAP  147 (198)
T ss_pred             HhcCCC
Confidence            999986

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3.6e-23  Score=154.92  Aligned_cols=142  Identities=17%  Similarity=0.250  Sum_probs=101.6

Q ss_pred             EEEeCe-eeecCC-----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--CCCc
Q psy17514          6 MVLDGF-KSYGTR-----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--GQAG   72 (159)
Q Consensus         6 l~l~~~-~~~~~~-----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~~~~   72 (159)
                      |+++|+ +.|+..     .+|++++     |++++|+||||||||||+++|+|++.|++|+++++| .++....  ....
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~~~~~~   80 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD-IVVSSTSKQKEIK   80 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC-EECccccccccHH
Confidence            789999 999632     4788888     789999999999999999999999999999999988 3321100  0011


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG  147 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~  147 (159)
                      ..++.++++||++..       .+++ .||.+|+.++... +.. ......+++.++++.++|..    ..+..+|+ |+
T Consensus        81 ~~~~~ig~v~q~~~~-------~l~~-~tv~~~l~~~~~~-~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqk  150 (288)
T PRK13643         81 PVRKKVGVVFQFPES-------QLFE-ETVLKDVAFGPQN-FGI-PKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQM  150 (288)
T ss_pred             HHHhhEEEEecCcch-------hccc-chHHHHHHhHHHH-cCC-CHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHH
Confidence            135679999998632       2343 4888988765321 111 11223456888999999952    45677777 43


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         +||++|+.+|+
T Consensus       151 qrvaiA~aL~~~p~  164 (288)
T PRK13643        151 RRVAIAGILAMEPE  164 (288)
T ss_pred             HHHHHHHHHHhCCC
Confidence               99999999996

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.85  E-value=9.3e-23  Score=150.00  Aligned_cols=142  Identities=18%  Similarity=0.245  Sum_probs=102.6

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh-------C---
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN-------G---   69 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~-------~---   69 (159)
                      |+++|+ +.|++..++.+++     +++++|+||||||||||+++|+|++.|++|++.++| .++....       +   
T Consensus         1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~i~~~~~~~~~~~~~~~   79 (252)
T TIGR03005         1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG-EQLYHMPGRNGPLVPADE   79 (252)
T ss_pred             CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccccccccccccccch
Confidence            478899 8998888888888     789999999999999999999999999999998887 3321100       0   


Q ss_pred             -CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe
Q psy17514         70 -QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM  145 (159)
Q Consensus        70 -~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~  145 (159)
                       .....++.+++++|++         .+++..|+.+|+.++....... ......+++.++++.+++..   ..+..+|+
T Consensus        80 ~~~~~~~~~i~~v~q~~---------~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~  149 (252)
T TIGR03005        80 KHLRQMRNKIGMVFQSF---------NLFPHKTVLDNVTEAPVLVLGM-ARAEAEKRAMELLDMVGLADKADHMPAQLSG  149 (252)
T ss_pred             hHHHHHhhCeEEEecCc---------ccCCCCcHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhHhhcChhhcCH
Confidence             0011246799999985         4677789999887632100000 11122356788999999965   45677777


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   ++|++++.+|+
T Consensus       150 G~~qrv~laral~~~p~  166 (252)
T TIGR03005       150 GQQQRVAIARALAMRPK  166 (252)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence             33   99999999986

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.2e-22  Score=149.63  Aligned_cols=142  Identities=15%  Similarity=0.148  Sum_probs=100.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++.+++     |++++|+|+||||||||+++|+|++.|     ++|+|+++| .++.........
T Consensus         7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~   85 (254)
T PRK14273          7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG-KNIYSNNFDILE   85 (254)
T ss_pred             eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC-EecccccccHHH
Confidence            5899999 9998878888888     789999999999999999999999987     489999887 332110001112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .++.|+|++|++         .+++ .|+.+|+.++... ..........+++.++++.+++.       ...+..+|+ 
T Consensus        86 ~~~~i~~v~q~~---------~~~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG  154 (254)
T PRK14273         86 LRRKIGMVFQTP---------NPFL-MSIYDNISYGPKI-HGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGG  154 (254)
T ss_pred             HhhceEEEeecc---------cccc-CcHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHH
Confidence            356799999985         2443 6899998765321 11011112235677888888872       145677777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +|||+++.+|+
T Consensus       155 ~~qrv~laral~~~p~  170 (254)
T PRK14273        155 QQQRLCIARTLAIEPN  170 (254)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            33   99999999986

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.4e-22  Score=149.74  Aligned_cols=142  Identities=14%  Similarity=0.200  Sum_probs=100.5

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..+|++++     |++++|+||||||||||+++|+|++.     |++|+|.++| .++.........
T Consensus        13 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g-~~~~~~~~~~~~   91 (260)
T PRK10744         13 KIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDG-ENILTPKQDIAL   91 (260)
T ss_pred             eEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECC-EEccccccchHH
Confidence            6899999 9998878888887     78999999999999999999999986     4789999887 332110000111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .++.++++||++         .+++ .|+.+|+.+... ...........+++.++++.+++.       ...+..+|+ 
T Consensus        92 ~~~~i~~~~q~~---------~~~~-~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  160 (260)
T PRK10744         92 LRAKVGMVFQKP---------TPFP-MSIYDNIAFGVR-LFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGG  160 (260)
T ss_pred             HhcceEEEecCC---------ccCc-CcHHHHHhhhHh-hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHH
Confidence            356799999985         3455 688888876421 010001112235678889998873       145667777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |.   +||++++.+|+
T Consensus       161 q~qrv~laral~~~p~  176 (260)
T PRK10744        161 QQQRLCIARGIAIRPE  176 (260)
T ss_pred             HHHHHHHHHHHHCCCC
Confidence            33   99999999986

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.7e-23  Score=157.46  Aligned_cols=146  Identities=17%  Similarity=0.244  Sum_probs=101.6

Q ss_pred             EEEEeCe-eeec----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC----CcccchhhhhHHHHHHhhCC
Q psy17514          5 SMVLDGF-KSYG----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG----IQVKQVRANTLQELIYKNGQ   70 (159)
Q Consensus         5 ~l~l~~~-~~~~----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~----~~~g~i~~~~~~~~~~~~~~   70 (159)
                      .|+++|+ +.|.    ...+++++|     |++++|+|+||||||||+++|+|+++    +++|+|+++| .++......
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g-~~i~~~~~~   81 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDD-IDLLRLSPR   81 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECC-EECCcCCHH
Confidence            4899999 9993    356888888     78999999999999999999999986    4789999887 332110000


Q ss_pred             --CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-EE---ECCEEeCHHHHHHHHHhcCccc------C
Q psy17514         71 --AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-YM---INGSSVNPKRVSDLFSSVNLNV------N  138 (159)
Q Consensus        71 --~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-~~---~~~~~~~~~~~~~~l~~~~l~~------~  138 (159)
                        ....++.|+++||++..       .+++.+||.+++....... +.   ........+++.++++.++|..      .
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~-------~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~  154 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQS-------CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS  154 (330)
T ss_pred             HHHHHhCCCEEEEecCcch-------hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence              01123579999999631       2556678877775421100 00   0011122457889999999963      5


Q ss_pred             CCeeEEe-C--h-hHhHhhcCCCC
Q psy17514        139 NPHFLIM-Q--G-RVTKVLNMKPH  158 (159)
Q Consensus       139 ~~~~l~~-q--~-~ia~~l~~~p~  158 (159)
                      +|..||+ |  + +||++|+.+|+
T Consensus       155 ~p~~LSgG~~QRv~iArAL~~~P~  178 (330)
T PRK15093        155 FPYELTEGECQKVMIAIALANQPR  178 (330)
T ss_pred             CchhCCHHHHHHHHHHHHHHCCCC
Confidence            6888888 3  3 99999999996

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3.9e-23  Score=154.66  Aligned_cols=143  Identities=14%  Similarity=0.243  Sum_probs=101.3

Q ss_pred             EEEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--CCC
Q psy17514          5 SMVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--GQA   71 (159)
Q Consensus         5 ~l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~~~   71 (159)
                      .|+++|+ +.|++     +.++++++     |++++|+|||||||||||++|+|+++|++|+|.++| +++....  ...
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~~~~~~~~   80 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAG-YHITPETGNKNL   80 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EECccccccchH
Confidence            4789999 99973     35788887     799999999999999999999999999999999988 3321100  000


Q ss_pred             ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-C
Q psy17514         72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-Q  146 (159)
Q Consensus        72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q  146 (159)
                      ...+..|++++|++..       .++ .+|+.+|+.++... ... ......+++.++++.++|. .   ..+..+|+ |
T Consensus        81 ~~~~~~ig~v~q~~~~-------~~~-~~tv~e~l~~~~~~-~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq  150 (287)
T PRK13641         81 KKLRKKVSLVFQFPEA-------QLF-ENTVLKDVEFGPKN-FGF-SEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQ  150 (287)
T ss_pred             HHHHhceEEEEeChhh-------hhc-cchHHHHHHHHHHH-cCC-CHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHH
Confidence            1134579999998521       133 46888988754220 100 1122235678899999996 2   45677777 3


Q ss_pred             h---hHhHhhcCCCC
Q psy17514        147 G---RVTKVLNMKPH  158 (159)
Q Consensus       147 ~---~ia~~l~~~p~  158 (159)
                      +   +||++++.+|+
T Consensus       151 ~qrl~laral~~~p~  165 (287)
T PRK13641        151 MRRVAIAGVMAYEPE  165 (287)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            3   99999999996

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.85  E-value=1.2e-22  Score=145.96  Aligned_cols=135  Identities=20%  Similarity=0.227  Sum_probs=98.2

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      ++++|+ +.|+..  +.+++     +++++|+||||||||||+++|+|+++|++|+|.+++ .++..    ....++.++
T Consensus         1 ~~~~~l~~~~~~~--~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~----~~~~~~~i~   73 (213)
T TIGR01277         1 LALDKVRYEYEHL--PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVND-QSHTG----LAPYQRPVS   73 (213)
T ss_pred             CeEEeeeEEeCCc--ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EEccc----CChhccceE
Confidence            468889 888642  34555     799999999999999999999999999999999987 33211    111346799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.++.....  .......+++.++++.++|..   ..+..+|+ |+   +||++
T Consensus        74 ~v~q~~---------~~~~~~t~~en~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara  142 (213)
T TIGR01277        74 MLFQEN---------NLFAHLTVRQNIGLGLHPGL--KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARC  142 (213)
T ss_pred             EEeccC---------ccCCCCcHHHHHHhHhhccC--CccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHH
Confidence            999986         46677899999875422111  111123456788999999964   45677777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       143 l~~~p~  148 (213)
T TIGR01277       143 LVRPNP  148 (213)
T ss_pred             HhcCCC
Confidence            999985

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=8.4e-23  Score=152.39  Aligned_cols=142  Identities=20%  Similarity=0.298  Sum_probs=101.5

Q ss_pred             EEEEeCe-eeecC------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCc
Q psy17514          5 SMVLDGF-KSYGT------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAG   72 (159)
Q Consensus         5 ~l~l~~~-~~~~~------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~   72 (159)
                      .|+++|+ ++|++      +.+|.+++     |++++|+|+||||||||+++|+|++.|++|+|+++| .++.. .....
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g-~~i~~-~~~~~   81 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDG-LDTSD-EENLW   81 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-Eeccc-cccHH
Confidence            5899999 99963      46888888     689999999999999999999999999999999987 33211 00001


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch-
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-  147 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-  147 (159)
                      ..++.++++||++..       .++ ..++.+|+.++... ... ......+++.++++.++|..   ..+..+|+ |+ 
T Consensus        82 ~~~~~i~~v~q~~~~-------~~~-~~~v~~~l~~~~~~-~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q  151 (280)
T PRK13633         82 DIRNKAGMVFQNPDN-------QIV-ATIVEEDVAFGPEN-LGI-PPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQ  151 (280)
T ss_pred             HHhhheEEEecChhh-------hhc-cccHHHHHHhhHhh-cCC-CHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH
Confidence            135679999998631       122 24677777664220 100 11222456788999999965   46778877 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        +||++++.+|+
T Consensus       152 rv~laral~~~p~  164 (280)
T PRK13633        152 RVAIAGILAMRPE  164 (280)
T ss_pred             HHHHHHHHHcCCC
Confidence              99999999996

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=8.4e-23  Score=154.76  Aligned_cols=143  Identities=15%  Similarity=0.166  Sum_probs=102.6

Q ss_pred             EEEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh------
Q psy17514          5 SMVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK------   67 (159)
Q Consensus         5 ~l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~------   67 (159)
                      .|+++|+ +.|++     ..+|++++     |++++|+|+||||||||+++|+|++.|++|+|+++| .++...      
T Consensus        21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g-~~~~~~~~~~~~   99 (320)
T PRK13631         21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGD-IYIGDKKNNHEL   99 (320)
T ss_pred             eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-EEcccccccccc
Confidence            5899999 99964     35888888     789999999999999999999999999999999887 222100      


Q ss_pred             ------h--CCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c-
Q psy17514         68 ------N--GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V-  137 (159)
Q Consensus        68 ------~--~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-  137 (159)
                            .  ......++.|+++||++..       .+++ .|+.+|+.++..  ..........+++.++++.++|. . 
T Consensus       100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~-------~l~~-~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~  169 (320)
T PRK13631        100 ITNPYSKKIKNFKELRRRVSMVFQFPEY-------QLFK-DTIEKDIMFGPV--ALGVKKSEAKKLAKFYLNKMGLDDSY  169 (320)
T ss_pred             cccccccccchHHHHHhcEEEEEECchh-------cccc-chHHHHHHhhHH--hcCCCHHHHHHHHHHHHHHcCCChhH
Confidence                  0  0011235689999998631       2444 488999876532  11001112245678899999995 2 


Q ss_pred             --CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        138 --NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       138 --~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                        ..+..+|+ |+   +|||+|+.+|+
T Consensus       170 ~~~~~~~LSgGqkqRvaiAraL~~~p~  196 (320)
T PRK13631        170 LERSPFGLSGGQKRRVAIAGILAIQPE  196 (320)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence              46778888 33   99999999996

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.1e-22  Score=149.62  Aligned_cols=142  Identities=15%  Similarity=0.170  Sum_probs=100.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++++++     |++++|+|||||||||||++|+|+..     |++|+|.++| +++.........
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~   84 (253)
T PRK14242          6 KMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG-ENIYDPHVDVVE   84 (253)
T ss_pred             EEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC-EEccccccCHHH
Confidence            5899999 9998878888888     78999999999999999999999974     5789999887 332110000111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-  145 (159)
                      .++.+++++|++         .+++ .|+.+|+.++... ..........+++.++++.+++..       ..+..+|+ 
T Consensus        85 ~~~~i~~v~q~~---------~~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG  153 (253)
T PRK14242         85 LRRRVGMVFQKP---------NPFP-KSIFENVAYGLRV-NGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGG  153 (253)
T ss_pred             HhhcEEEEecCC---------CCCc-CcHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence            356799999985         3555 4889998764220 101111122456778889888831       34667777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +||++++.+|+
T Consensus       154 q~qrv~laral~~~p~  169 (253)
T PRK14242        154 QQQRLCIARALAVEPE  169 (253)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999985

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.1e-22  Score=148.11  Aligned_cols=143  Identities=17%  Similarity=0.198  Sum_probs=101.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC--C---cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG--I---QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~--~---~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++++++     |++++|+|+||||||||+++|+|+++  |   ++|+++++| .++.........
T Consensus         4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g-~~i~~~~~~~~~   82 (252)
T PRK14256          4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD-TDIYDRGVDPVS   82 (252)
T ss_pred             EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC-EEcccccCChHH
Confidence            5899999 9998888899888     78999999999999999999999986  3   589999987 332110101112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-  145 (159)
                      .++.+++++|++         .+++..|+.+|+.++... ..........+++.++++.+++..       ..+..+|+ 
T Consensus        83 ~~~~i~~~~q~~---------~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  152 (252)
T PRK14256         83 IRRRVGMVFQKP---------NPFPAMSIYDNVIAGYKL-NGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGG  152 (252)
T ss_pred             hhccEEEEecCC---------CCCCcCcHHHHHHhHHHh-cCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHH
Confidence            356799999985         466777899988754220 000011122356778888888742       34567777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   ++|++++.+|+
T Consensus       153 ~~qrl~laral~~~p~  168 (252)
T PRK14256        153 QQQRLCIARTIAVKPE  168 (252)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999986

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7.8e-23  Score=163.49  Aligned_cols=143  Identities=15%  Similarity=0.258  Sum_probs=104.8

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..++++++     |++++|+||||||||||+++|+|+++|++|+|++++ .++.. .......++.|
T Consensus         4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-~~i~~-~~~~~~~~~~i   81 (501)
T PRK11288          4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG-QEMRF-ASTTAALAAGV   81 (501)
T ss_pred             eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC-EECCC-CCHHHHHhCCE
Confidence            4899999 9998888899888     689999999999999999999999999999999877 23210 00001124579


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE-ECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM-INGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      ++++|++         .+++.+|+.+|+.++...... ........+++.++++.++|..   ..+..||+ |+   +||
T Consensus        82 ~~v~q~~---------~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la  152 (501)
T PRK11288         82 AIIYQEL---------HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA  152 (501)
T ss_pred             EEEEech---------hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence            9999985         466778999998775321110 0011122356788999999964   45677877 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       153 ral~~~p~  160 (501)
T PRK11288        153 KALARNAR  160 (501)
T ss_pred             HHHHhCCC
Confidence            99999986

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.85  E-value=1.9e-22  Score=145.87  Aligned_cols=131  Identities=14%  Similarity=0.270  Sum_probs=99.8

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++.+++     +++++|+|||||||||||++|+|+++|++|++.+++ .++.   . .  ..+.++
T Consensus         1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~-~~~~---~-~--~~~~~~   73 (223)
T TIGR03740         1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-HPWT---R-K--DLHKIG   73 (223)
T ss_pred             CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-Eecc---c-c--ccccEE
Confidence            478899 8898878888887     789999999999999999999999999999999887 2221   1 1  124789


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++..|+.+|+.+...  ..  +  ...+++.++++.++|..   ..+..+|+ |+   ++|++
T Consensus        74 ~~~q~~---------~~~~~~t~~~~~~~~~~--~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~lara  138 (223)
T TIGR03740        74 SLIESP---------PLYENLTARENLKVHTT--LL--G--LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIA  138 (223)
T ss_pred             EEcCCC---------CccccCCHHHHHHHHHH--Hc--C--CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHH
Confidence            999875         35666788888865321  11  1  12467888999999975   34667776 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       139 l~~~p~  144 (223)
T TIGR03740       139 LLNHPK  144 (223)
T ss_pred             HhcCCC
Confidence            999986

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.85  E-value=8.9e-23  Score=150.45  Aligned_cols=141  Identities=18%  Similarity=0.209  Sum_probs=101.4

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..+|++++     |++++|+||||||||||+++|+|+++|++|++.+++ .++.. .. ....++.++
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~-~~-~~~~~~~i~   78 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAG-VDLHG-LS-RRARARRVA   78 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECC-EEccc-CC-HHHHhhheE
Confidence            678999 9998888899888     789999999999999999999999999999999887 23211 00 011234689


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      |++|++         .+++.+|+.+|+.++....  ..........+++.++++.+++..   ..+..+|+ |+   ++|
T Consensus        79 ~~~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  149 (256)
T TIGR03873        79 LVEQDS---------DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVA  149 (256)
T ss_pred             EecccC---------ccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence            999985         2445568888887642110  110111122346788999999864   45667777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       150 ~al~~~p~  157 (256)
T TIGR03873       150 RALAQEPK  157 (256)
T ss_pred             HHHhcCCC
Confidence            99999985

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.85  E-value=2.5e-23  Score=141.05  Aligned_cols=136  Identities=18%  Similarity=0.210  Sum_probs=104.2

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      +++.++ ..-.+..+|+++|     ||+.+|+||||||||||+++++.+..|++|.+.+.| +++...+.  ...|.+|+
T Consensus         4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~G-e~vs~~~p--ea~Rq~Vs   80 (223)
T COG4619           4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG-EDVSTLKP--EAYRQQVS   80 (223)
T ss_pred             hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcC-ccccccCh--HHHHHHHH
Confidence            556666 4446677888887     799999999999999999999999999999999999 55533222  22467899


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe---Ch-hHhH
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM---QG-RVTK  151 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~---q~-~ia~  151 (159)
                      |+-|.|         .+|++ ||++|+.|+    +++.+.+.+.+.+.++++.+++.+    .+...+|+   |+ +++|
T Consensus        81 Y~~Q~p---------aLfg~-tVeDNlifP----~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR  146 (223)
T COG4619          81 YCAQTP---------ALFGD-TVEDNLIFP----WQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIR  146 (223)
T ss_pred             HHHcCc---------ccccc-chhhccccc----hHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHH
Confidence            999987         46664 999999998    334444456788899999999986    34566776   33 7788


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      -|.-.|+
T Consensus       147 ~Lq~~P~  153 (223)
T COG4619         147 NLQFMPK  153 (223)
T ss_pred             HhhcCCc
Confidence            7777665

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.2e-22  Score=146.40  Aligned_cols=135  Identities=19%  Similarity=0.210  Sum_probs=98.9

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..  .+++     |++++|+||||||||||+++|+|++.|++|++.+++ +++.. .   ...++.++
T Consensus         2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~---~~~~~~i~   74 (232)
T PRK10771          2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG-QDHTT-T---PPSRRPVS   74 (232)
T ss_pred             eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-eecCc-C---ChhhccEE
Confidence            789999 9997643  2454     789999999999999999999999999999999987 33211 0   11235799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.++...  .........+++.++++.++|..   ..+..+|+ |+   ++|++
T Consensus        75 ~~~q~~---------~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara  143 (232)
T PRK10771         75 MLFQEN---------NLFSHLTVAQNIGLGLNP--GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARC  143 (232)
T ss_pred             EEeccc---------ccccCCcHHHHHhccccc--ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHH
Confidence            999985         466778999988764211  00111123456888999999965   45677777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       144 l~~~p~  149 (232)
T PRK10771        144 LVREQP  149 (232)
T ss_pred             HhcCCC
Confidence            999985

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.8e-22  Score=147.96  Aligned_cols=140  Identities=20%  Similarity=0.227  Sum_probs=100.2

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC---CcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG---IQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~---~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      ++++|+ +.|++..+|++++     +++++|+||||||||||+++|+|++.   |++|+|.++| +++....  ....++
T Consensus         3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g-~~i~~~~--~~~~~~   79 (246)
T PRK14269          3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEG-KDVKNQD--VVALRK   79 (246)
T ss_pred             eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECC-EecccCC--HHHHhh
Confidence            689999 9998878888887     78999999999999999999999974   6899999887 3332111  112356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-Ch-
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-QG-  147 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-q~-  147 (159)
                      .++|++|++         .+++ .|+.+|+.++....-..........++.++++.+++..       ..+..+|+ |+ 
T Consensus        80 ~i~~~~q~~---------~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  149 (246)
T PRK14269         80 NVGMVFQQP---------NVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQ  149 (246)
T ss_pred             hEEEEecCC---------cccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHH
Confidence            799999985         3555 58999987652210000011122346778899999841       34567777 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        ++||+++.+|+
T Consensus       150 rv~laral~~~p~  162 (246)
T PRK14269        150 RLCIARALAIKPK  162 (246)
T ss_pred             HHHHHHHHhcCCC
Confidence              99999999986

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.84  E-value=2.8e-23  Score=160.04  Aligned_cols=136  Identities=15%  Similarity=0.185  Sum_probs=98.6

Q ss_pred             eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHH---HHHHhhCC--CceeEEEEEEE
Q psy17514         12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ---ELIYKNGQ--AGVTKASVTLT   81 (159)
Q Consensus        12 ~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~---~~~~~~~~--~~~~~~~i~~v   81 (159)
                      +.|+...++.++|     +++++|+|+||||||||+++|+|++.|++|+|.++|..   ++......  ....++.++|+
T Consensus        32 ~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v  111 (382)
T TIGR03415        32 DETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV  111 (382)
T ss_pred             HhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence            5566666777777     78999999999999999999999999999999998721   21110000  01123579999


Q ss_pred             EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhc
Q psy17514         82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLN  154 (159)
Q Consensus        82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~  154 (159)
                      ||++         .+++++|+.+|+.++..  +.........+++.++++.++|..   .++.++|+ |+   .|||+|+
T Consensus       112 fQ~~---------~l~p~~Tv~eNi~~~~~--~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa  180 (382)
T TIGR03415       112 FQKF---------ALMPWLTVEENVAFGLE--MQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFA  180 (382)
T ss_pred             ECCC---------cCCCCCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence            9985         57888999999987632  110112223457788999999975   46778888 33   9999999


Q ss_pred             CCCC
Q psy17514        155 MKPH  158 (159)
Q Consensus       155 ~~p~  158 (159)
                      .+|+
T Consensus       181 ~~P~  184 (382)
T TIGR03415       181 MDAD  184 (382)
T ss_pred             cCCC
Confidence            9996

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.84  E-value=8.4e-23  Score=148.04  Aligned_cols=144  Identities=19%  Similarity=0.256  Sum_probs=99.1

Q ss_pred             EEEeCe-eeecCC----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-Ccee
Q psy17514          6 MVLDGF-KSYGTR----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVT   74 (159)
Q Consensus         6 l~l~~~-~~~~~~----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~   74 (159)
                      |+++|+ +.|++.    .++.+++     |++++|+|||||||||||++|+|+++|++|++.++| .++...... ....
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~   80 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDG-KDLLKLSRRLRKIR   80 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEccccchhhHHHh
Confidence            688999 999765    6888888     789999999999999999999999999999999887 332110100 0123


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHH-HHHHHHhcCcc-c---CCCeeEEe-Ch-
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKR-VSDLFSSVNLN-V---NNPHFLIM-QG-  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~-~---~~~~~l~~-q~-  147 (159)
                      ++.+++++|++.       ..+++.+|+.+|+.++... ..........+. +.++++.+++. .   ..+..+|+ |+ 
T Consensus        81 ~~~i~~~~q~~~-------~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q  152 (228)
T cd03257          81 RKEIQMVFQDPM-------SSLNPRMTIGEQIAEPLRI-HGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQ  152 (228)
T ss_pred             hccEEEEecCch-------hhcCCcCCHHHHHHHHHHh-ccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHH
Confidence            567999999852       1244567888888653210 100001111122 24788899984 2   45677777 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        ++|++++.+|+
T Consensus       153 rv~laral~~~p~  165 (228)
T cd03257         153 RVAIARALALNPK  165 (228)
T ss_pred             HHHHHHHHhcCCC
Confidence              99999999986

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=5.5e-23  Score=156.19  Aligned_cols=145  Identities=18%  Similarity=0.213  Sum_probs=101.8

Q ss_pred             EEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC----cccchhhhhHHHHHHhhC-
Q psy17514          5 SMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI----QVKQVRANTLQELIYKNG-   69 (159)
Q Consensus         5 ~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~----~~g~i~~~~~~~~~~~~~-   69 (159)
                      .|+++|+ +.|+.    ..+|+++|     |++++|+|+||||||||+++|+|++++    ++|+|.++| +++..... 
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G-~~i~~~~~~   81 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNG-QDLQRISEK   81 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECC-EECCcCCHH
Confidence            3899999 99976    46899988     789999999999999999999999973    789999987 33311000 


Q ss_pred             -CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc------CCCee
Q psy17514         70 -QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV------NNPHF  142 (159)
Q Consensus        70 -~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~  142 (159)
                       .....++.|+++||++..       .+++.+++.+++...... ..........+++.++++.++|..      .+|.+
T Consensus        82 ~~~~~r~~~i~~v~Q~~~~-------~l~p~~~v~~~i~~~l~~-~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~  153 (326)
T PRK11022         82 ERRNLVGAEVAMIFQDPMT-------SLNPCYTVGFQIMEAIKV-HQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQ  153 (326)
T ss_pred             HHHHHhCCCEEEEecCchh-------hcCCcCCHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchh
Confidence             001123469999998631       356666776655432210 000012223467889999999963      47888


Q ss_pred             EEe-C--h-hHhHhhcCCCC
Q psy17514        143 LIM-Q--G-RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q--~-~ia~~l~~~p~  158 (159)
                      ||+ |  + +||++|+.+|+
T Consensus       154 LSgGq~QRv~iArAL~~~P~  173 (326)
T PRK11022        154 LSGGMSQRVMIAMAIACRPK  173 (326)
T ss_pred             CCHHHHHHHHHHHHHHhCCC
Confidence            988 3  3 99999999996

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2e-22  Score=148.19  Aligned_cols=142  Identities=18%  Similarity=0.201  Sum_probs=100.2

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++.+++     |++++|+|+||||||||+++|+|+..|     ++|+|.++| .++.........
T Consensus         4 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~   82 (251)
T PRK14270          4 KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG-KNIYDKDVDVVE   82 (251)
T ss_pred             EEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC-EecccccccHHH
Confidence            4789999 9998878888887     799999999999999999999999875     789999987 333210010111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .++.+++++|++         .+++ .|+.+|+.+.... ..........+++.++++.+++.       ...+..+|+ 
T Consensus        83 ~~~~i~~~~q~~---------~~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  151 (251)
T PRK14270         83 LRKRVGMVFQKP---------NPFP-MSIYDNVAYGPRI-HGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGG  151 (251)
T ss_pred             HHhheEEEecCC---------CcCC-CcHHHHHHhHHHh-cCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence            356799999985         3455 6899998764220 10001112234567888888873       145667777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +||++++.+|+
T Consensus       152 ~~qrv~laral~~~p~  167 (251)
T PRK14270        152 QQQRLCIARTIAVKPD  167 (251)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999885

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.84  E-value=1.7e-19  Score=131.92  Aligned_cols=129  Identities=30%  Similarity=0.527  Sum_probs=91.2

Q ss_pred             EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEE
Q psy17514          3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTF   82 (159)
Q Consensus         3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~   82 (159)
                      +.+|+++|||+|++..++.++++++++|+||||||||||+++|++++....+..+.....+++..+.......+.|.++|
T Consensus         1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~   80 (243)
T cd03272           1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIF   80 (243)
T ss_pred             CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEE
Confidence            35799999999999888889999999999999999999999999998766544554423355443332233567889999


Q ss_pred             EcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc
Q psy17514         83 DNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN  136 (159)
Q Consensus        83 q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  136 (159)
                      ++++.....    ..++.++.+.+..... .+.+++.....+++...++.+++.
T Consensus        81 ~~~~~~~~~----~~~~~~i~r~ig~~~~-~~~l~~~~~t~~ei~~~l~~~gl~  129 (243)
T cd03272          81 DNSDNRFPI----DKEEVRLRRTIGLKKD-EYFLDKKNVTKNDVMNLLESAGFS  129 (243)
T ss_pred             EcCCCccCC----CCCEEEEEEEEECCCC-EEEECCeEcCHHHHHHHHHHcCCC
Confidence            876432100    1134577777765433 456667666667788888877764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=6.2e-23  Score=155.89  Aligned_cols=145  Identities=14%  Similarity=0.213  Sum_probs=103.8

Q ss_pred             EEEEeCe-eeecC----------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh
Q psy17514          5 SMVLDGF-KSYGT----------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN   68 (159)
Q Consensus         5 ~l~l~~~-~~~~~----------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~   68 (159)
                      .|+++|+ +.|..          ..++++++     |++++|+|+||||||||+++|+|++.|++|+|.++| .++....
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g-~~l~~~~   83 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKAD   83 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECC-EEcCcCC
Confidence            4899999 99952          46788887     799999999999999999999999999999999987 3332100


Q ss_pred             C-CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeE
Q psy17514         69 G-QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFL  143 (159)
Q Consensus        69 ~-~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l  143 (159)
                      . .....++.|+++||++..       .+++.+++.+++..+....... ......+++.++++.++|..    .+|..|
T Consensus        84 ~~~~~~~r~~i~~v~Q~~~~-------~l~p~~~v~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~p~~L  155 (327)
T PRK11308         84 PEAQKLLRQKIQIVFQNPYG-------SLNPRKKVGQILEEPLLINTSL-SAAERREKALAMMAKVGLRPEHYDRYPHMF  155 (327)
T ss_pred             HHHHHHHhCCEEEEEcCchh-------hcCCccCHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHCCCChHHhcCCCccC
Confidence            0 001124579999999632       3566678877765432100001 12223467889999999953    578888


Q ss_pred             Ee-C--h-hHhHhhcCCCC
Q psy17514        144 IM-Q--G-RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q--~-~ia~~l~~~p~  158 (159)
                      |+ |  + +||++|+.+|+
T Consensus       156 SgGq~QRv~iArAL~~~P~  174 (327)
T PRK11308        156 SGGQRQRIAIARALMLDPD  174 (327)
T ss_pred             CHHHHHHHHHHHHHHcCCC
Confidence            88 3  3 99999999996

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.84  E-value=7.1e-23  Score=147.84  Aligned_cols=142  Identities=18%  Similarity=0.229  Sum_probs=102.5

Q ss_pred             EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-Ccee
Q psy17514          6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVT   74 (159)
Q Consensus         6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~   74 (159)
                      |+++|+ +.|++    ..++++++     |++++|+|+||||||||+++|+|+++|++|+|.++| .++...... ....
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~   80 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLG-QELYGASEKELVQL   80 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EEhHhcCHhHHHHH
Confidence            678899 88864    56888887     789999999999999999999999999999999887 333211110 0113


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---  147 (159)
                      ++.+++++|++         .+++++|+.+|+.+.... ..........+.+.++++.++|..   ..+..+|+ |+   
T Consensus        81 ~~~i~~~~q~~---------~~~~~~t~~~n~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv  150 (220)
T TIGR02982        81 RRNIGYIFQAH---------NLLGFLTARQNVQMALEL-QPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRV  150 (220)
T ss_pred             HhheEEEcCCh---------hhcCCCCHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH
Confidence            56799999985         466667888888764220 100011122356788999999965   45677777 33   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      ++|++++.+|+
T Consensus       151 ~laral~~~p~  161 (220)
T TIGR02982       151 AIARALVHRPK  161 (220)
T ss_pred             HHHHHHhcCCC
Confidence            99999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=7.7e-23  Score=152.24  Aligned_cols=142  Identities=20%  Similarity=0.268  Sum_probs=100.3

Q ss_pred             EEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      |+++|+ +.|+ ...++.+++     |++++|+||||||||||+++|+|+++|++|+|+++| .++..........++.|
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g-~~~~~~~~~~~~~~~~i   80 (275)
T PRK13639          2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKG-EPIKYDKKSLLEVRKTV   80 (275)
T ss_pred             EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC-EECccccchHHHHHhhe
Confidence            789999 9996 456888887     789999999999999999999999999999999987 33210000001135679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      ++++|++..       .++ ..|+.+|+.++... .. .......+++.++++.++|..   ..+..+|+ |+   ++|+
T Consensus        81 ~~v~q~~~~-------~~~-~~tv~e~i~~~~~~-~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lar  150 (275)
T PRK13639         81 GIVFQNPDD-------QLF-APTVEEDVAFGPLN-LG-LSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAG  150 (275)
T ss_pred             EEEeeChhh-------hhc-cccHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHH
Confidence            999998521       123 35888888654210 10 011122356788999999964   45677777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       151 al~~~p~  157 (275)
T PRK13639        151 ILAMKPE  157 (275)
T ss_pred             HHhcCCC
Confidence            9999986

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.8e-22  Score=148.26  Aligned_cols=142  Identities=15%  Similarity=0.205  Sum_probs=99.3

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++.+++     |++++|+||||||||||+++|+|+++|     ++|++.++| .++.........
T Consensus         3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g-~~~~~~~~~~~~   81 (250)
T PRK14262          3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG-QDIYDPQLDVTE   81 (250)
T ss_pred             eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC-EEcccchhhHHH
Confidence            4899999 9998888888887     689999999999999999999999874     789999887 232110000111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-  145 (159)
                      .++.+++++|++         .+++ .|+.+|+.+... ...........+.+.++++.+++..       ..+..+|+ 
T Consensus        82 ~~~~i~~~~q~~---------~~~~-~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  150 (250)
T PRK14262         82 YRKKVGMVFQKP---------TPFP-MSIYDNVAFGPR-IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGG  150 (250)
T ss_pred             hhhhEEEEecCC---------ccCc-ccHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHH
Confidence            356799999985         3455 688888876421 0100111112345677888888742       35567777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |.   ++|++++.+|+
T Consensus       151 q~qr~~la~al~~~p~  166 (250)
T PRK14262        151 QQQRLCIARALAVEPE  166 (250)
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            33   99999999986

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.84  E-value=4.6e-22  Score=159.99  Aligned_cols=132  Identities=13%  Similarity=0.112  Sum_probs=102.4

Q ss_pred             EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ .+|++ ..+|+++|     |+.++|+||||||||||+++|+|+++|++|+|.++| .++... .  ...++.
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g-~~i~~~-~--~~lr~~  409 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG-VSVSSL-Q--DELRRR  409 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EEhhhH-H--HHHHhh
Confidence            5899999 99975 46889888     799999999999999999999999999999999988 343221 1  225778


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l  143 (159)
                      |++|+|++         .+|+ -|+++||.++.        ....++++.++++.+++.+              +.-..+
T Consensus       410 i~~V~Q~~---------~lF~-~TI~eNI~~g~--------~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L  471 (529)
T TIGR02868       410 ISVFAQDA---------HLFD-TTVRDNLRLGR--------PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL  471 (529)
T ss_pred             eEEEccCc---------cccc-ccHHHHHhccC--------CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcC
Confidence            99999996         3454 49999998863        2235577888888877753              123456


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +|||++..+|+
T Consensus       472 SGGQrQRiaiARall~~~~  490 (529)
T TIGR02868       472 SGGERQRLALARALLADAP  490 (529)
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            66 33   99999999986

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=3.3e-22  Score=147.66  Aligned_cols=143  Identities=15%  Similarity=0.209  Sum_probs=99.2

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC--C---cccchhhhhHHHHHHhhCCCc
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG--I---QVKQVRANTLQELIYKNGQAG   72 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~--~---~~g~i~~~~~~~~~~~~~~~~   72 (159)
                      ..|+++|+ +.|++..++.+++     |++++|+||||||||||+++|+|++.  |   ++|++.++| .++........
T Consensus        11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g-~~~~~~~~~~~   89 (259)
T PRK14274         11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG-SNILKGKVDLV   89 (259)
T ss_pred             ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC-EEccccccCHH
Confidence            46899999 9998878888887     78999999999999999999999987  3   589999887 33211000011


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM  145 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~  145 (159)
                      ..++.+++++|++         .+++. |+.+|+.+.... ..........+++.++++.+++..       ..+..+|+
T Consensus        90 ~~~~~i~~v~q~~---------~~~~~-tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~  158 (259)
T PRK14274         90 ELRKNIGMVFQKG---------NPFPQ-SIFDNVAYGPRI-HGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSG  158 (259)
T ss_pred             HHhhceEEEecCC---------ccccc-CHHHHHHhHHHh-cCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCH
Confidence            1346799999985         34554 888888764210 100011122345677888888741       34566777


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   ++|++++.+|+
T Consensus       159 Gq~qrv~laral~~~p~  175 (259)
T PRK14274        159 GQQQRLCIARALATNPD  175 (259)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence             33   99999999986

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.9e-22  Score=148.35  Aligned_cols=146  Identities=16%  Similarity=0.184  Sum_probs=100.3

Q ss_pred             CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC--C---cccchhhhhHHHHHHhhC
Q psy17514          1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG--I---QVKQVRANTLQELIYKNG   69 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~--~---~~g~i~~~~~~~~~~~~~   69 (159)
                      |....|+++|+ +.|++..++.+++     |++++|+||||||||||+++|+|+..  |   ++|+|.++| .++.....
T Consensus         1 ~~~~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g-~~~~~~~~   79 (252)
T PRK14239          1 MTEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG-HNIYSPRT   79 (252)
T ss_pred             CCCceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC-EECcCccc
Confidence            44346899999 9998878888887     78999999999999999999999853  5   489999887 33211000


Q ss_pred             CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCee
Q psy17514         70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHF  142 (159)
Q Consensus        70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~  142 (159)
                      .....++.+++++|++         .+++ .|+.+|+.++... ..........+++.++++.+++.       ...+..
T Consensus        80 ~~~~~~~~i~~v~q~~---------~~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  148 (252)
T PRK14239         80 DTVDLRKEIGMVFQQP---------NPFP-MSIYENVVYGLRL-KGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG  148 (252)
T ss_pred             chHhhhhcEEEEecCC---------ccCc-CcHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCccc
Confidence            0111356799999985         3455 6899998764210 10111111234567788888763       145667


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++|++++.+|+
T Consensus       149 LS~G~~qrv~laral~~~p~  168 (252)
T PRK14239        149 LSGGQQQRVCIARVLATSPK  168 (252)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            777 33   99999999986

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=4.1e-22  Score=147.91  Aligned_cols=140  Identities=15%  Similarity=0.137  Sum_probs=99.2

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..+|++++     +++++|+|||||||||||++|+|+++     |++|++.++| .++.........
T Consensus        13 ~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g-~~i~~~~~~~~~   91 (269)
T PRK14259         13 IISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG-TDLYDPRVDPVE   91 (269)
T ss_pred             eEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC-EEcccccCCHHH
Confidence            5899999 9998888889887     78999999999999999999999987     5899999887 332110000111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .++.+++++|++         .+++ .|+.+|+.+...  ..... ....+++.++++.+++.       ...+..+|+ 
T Consensus        92 ~~~~i~~v~q~~---------~l~~-~tv~enl~~~~~--~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G  158 (269)
T PRK14259         92 VRRRIGMVFQQP---------NPFP-KSIYENIAFGAR--INGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGG  158 (269)
T ss_pred             HhhceEEEccCC---------ccch-hhHHHHHhhhhh--hcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHH
Confidence            345799999985         3555 389999876532  11001 11234567778888763       134567777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   ++|++++.+|+
T Consensus       159 ~~qrl~laral~~~p~  174 (269)
T PRK14259        159 QQQRLCIARTIAIEPE  174 (269)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999986

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.84  E-value=3.9e-21  Score=142.88  Aligned_cols=141  Identities=11%  Similarity=0.182  Sum_probs=97.8

Q ss_pred             EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ +.|+ +..++.+++     |++++|+||||||||||+++|+|+++|++|+|.++| +++..     ...+..
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~-----~~~~~~   79 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILG-QPTRQ-----ALQKNL   79 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEhHH-----hhccce
Confidence            6899999 9995 577888887     789999999999999999999999999999999887 33321     112346


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R  148 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~  148 (159)
                      ++|++|++..       ......++.+++.++....  ..........+++.++++.++|..   ..+..+|+ |+   +
T Consensus        80 i~~v~q~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~  152 (272)
T PRK15056         80 VAYVPQSEEV-------DWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVF  152 (272)
T ss_pred             EEEecccccc-------ccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH
Confidence            9999998521       0111235666665431100  000011112346778899999964   45667777 33   9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      +|++++.+|+
T Consensus       153 laraL~~~p~  162 (272)
T PRK15056        153 LARAIAQQGQ  162 (272)
T ss_pred             HHHHHhcCCC
Confidence            9999999986

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.84  E-value=2.2e-22  Score=149.01  Aligned_cols=145  Identities=17%  Similarity=0.209  Sum_probs=106.3

Q ss_pred             EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-C----cccchhhhhHHHHHHhhCC
Q psy17514          6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-I----QVKQVRANTLQELIYKNGQ   70 (159)
Q Consensus         6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-~----~~g~i~~~~~~~~~~~~~~   70 (159)
                      |+++|+ ..|..    ..+++++|     +|+++|+|+|||||||+..+|.++++ +    .+|+|.++| +++......
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g-~~l~~l~~~   80 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG-KDLLSLSEK   80 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECC-cccccCCHH
Confidence            688898 77754    35788888     69999999999999999999999997 3    368999988 555432221


Q ss_pred             C--ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc------CCCee
Q psy17514         71 A--GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV------NNPHF  142 (159)
Q Consensus        71 ~--~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~  142 (159)
                      .  ..+.+.|+++||+|..       .+.|-++|.+++.-..........+.+..+++.++|+.++|..      .+|++
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~-------sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe  153 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMT-------SLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHE  153 (316)
T ss_pred             HHHhhcCceEEEEEcCchh-------hcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc
Confidence            1  2356789999999854       3566677777665432211110012234568899999999985      58999


Q ss_pred             EEe---Ch-hHhHhhcCCCC
Q psy17514        143 LIM---QG-RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~---q~-~ia~~l~~~p~  158 (159)
                      +|+   |+ .||.+++.+|+
T Consensus       154 lSGGMrQRV~IAmala~~P~  173 (316)
T COG0444         154 LSGGMRQRVMIAMALALNPK  173 (316)
T ss_pred             cCCcHHHHHHHHHHHhCCCC
Confidence            999   45 99999999996

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.84  E-value=2.5e-22  Score=146.52  Aligned_cols=137  Identities=19%  Similarity=0.274  Sum_probs=101.0

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|+++.++.+++     +++++|+||||||||||+++|+|+++|++|++.++| .++..    ....++.++
T Consensus         1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g-~~~~~----~~~~~~~i~   75 (237)
T TIGR00968         1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNG-QDATR----VHARDRKIG   75 (237)
T ss_pred             CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EEcCc----CChhhcCEE
Confidence            468899 8898888888887     789999999999999999999999999999999887 33211    111245799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|.+         .+++.+|+.+|+.+...  ..........+.+.++++.+++..   ..+..+|+ |.   ++|++
T Consensus        76 ~~~q~~---------~~~~~~t~~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~lara  144 (237)
T TIGR00968        76 FVFQHY---------ALFKHLTVRDNIAFGLE--IRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARA  144 (237)
T ss_pred             EEecCh---------hhccCCcHHHHHHhHHH--hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence            999985         46667788888865421  110011122356788899999864   44566777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       145 l~~~p~  150 (237)
T TIGR00968       145 LAVEPQ  150 (237)
T ss_pred             HhcCCC
Confidence            999986

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.84  E-value=3.6e-22  Score=142.97  Aligned_cols=132  Identities=14%  Similarity=0.184  Sum_probs=99.4

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++++++     +++++|+||||||||||+++|+|+..|++|+|.+++ .++ . ..  . .+..++
T Consensus         3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~-~-~~--~-~~~~~~   76 (207)
T PRK13539          3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDG-GDI-D-DP--D-VAEACH   76 (207)
T ss_pred             EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EeC-c-ch--h-hHhhcE
Confidence            799999 9998878888888     789999999999999999999999999999999887 221 1 00  1 345688


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|.+         .+++..|+.+|+.+...  .  .+  ...+++.++++.++|..   ..+..+|+ |+   +||++
T Consensus        77 ~~~~~~---------~~~~~~tv~~~l~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a  141 (207)
T PRK13539         77 YLGHRN---------AMKPALTVAENLEFWAA--F--LG--GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARL  141 (207)
T ss_pred             EecCCC---------cCCCCCcHHHHHHHHHH--h--cC--CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHH
Confidence            888653         34566788888765321  1  11  12356888999999965   34566776 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       142 l~~~p~  147 (207)
T PRK13539        142 LVSNRP  147 (207)
T ss_pred             HhcCCC
Confidence            999986

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=3.3e-22  Score=146.90  Aligned_cols=142  Identities=15%  Similarity=0.196  Sum_probs=99.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++.+++     +++++|+||||||||||+++|+|+..+     ++|+|.++| .++.........
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~   81 (250)
T PRK14240          3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG-QDIYKSDIDVNQ   81 (250)
T ss_pred             eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC-EEccccccchHH
Confidence            4899999 9998888888888     789999999999999999999998763     689999987 332110000111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .+..+++++|++         .+++ .|+.+|+.++... ..........+.+.++++.+++.       ...+..+|+ 
T Consensus        82 ~~~~i~~~~q~~---------~~~~-~t~~~ni~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G  150 (250)
T PRK14240         82 LRKRVGMVFQQP---------NPFP-MSIYDNVAYGPRT-HGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGG  150 (250)
T ss_pred             HhccEEEEecCC---------ccCc-ccHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHH
Confidence            356799999985         3455 6888988764210 10011112245677788888763       134567777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |.   +|||+++.+|+
T Consensus       151 ~~qrv~laral~~~p~  166 (250)
T PRK14240        151 QQQRLCIARALAVEPE  166 (250)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999986

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.84  E-value=1.6e-22  Score=147.03  Aligned_cols=137  Identities=20%  Similarity=0.238  Sum_probs=100.9

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ ++|+++.++++++     |++++|+|+||||||||+++|+|+++|+.|++.++| .++..    ....++.++
T Consensus         1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g-~~~~~----~~~~~~~i~   75 (232)
T cd03300           1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG-KDITN----LPPHKRPVN   75 (232)
T ss_pred             CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EEcCc----CChhhcceE
Confidence            468899 8998878888887     789999999999999999999999999999999887 33211    011245799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.+...  ..........+++.++++.+++..   ..+..+|+ |.   ++|++
T Consensus        76 ~~~q~~---------~~~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~lara  144 (232)
T cd03300          76 TVFQNY---------ALFPHLTVFENIAFGLR--LKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARA  144 (232)
T ss_pred             EEeccc---------ccCCCCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence            999985         35666788888765421  110011122456778899999975   45667777 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       145 l~~~p~  150 (232)
T cd03300         145 LVNEPK  150 (232)
T ss_pred             HhcCCC
Confidence            999986

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=4.9e-22  Score=147.40  Aligned_cols=142  Identities=18%  Similarity=0.197  Sum_probs=98.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++++++     |++++|+|+||||||||+++|+|+..     |++|++.++| +++.........
T Consensus        21 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~   99 (268)
T PRK14248         21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG-LNILDSNINVVN   99 (268)
T ss_pred             eEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC-EEcccccccHHH
Confidence            4899999 9998888899887     78999999999999999999999864     6899999887 332110000111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .++.++|++|++         .+++. |+.+|+.++.. ...........+.+.++++.+++.       ...+..+|+ 
T Consensus       100 ~~~~i~~v~q~~---------~~~~~-tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG  168 (268)
T PRK14248        100 LRREIGMVFQKP---------NPFPK-SIYNNITHALK-YAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGG  168 (268)
T ss_pred             HhccEEEEecCC---------ccCcc-cHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHH
Confidence            356799999985         34553 88888876421 010001111234567778888773       145667777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +||++++.+|+
T Consensus       169 q~qrl~laral~~~p~  184 (268)
T PRK14248        169 QQQRLCIARTLAMKPA  184 (268)
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            33   99999999986

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.84  E-value=1.7e-22  Score=149.69  Aligned_cols=145  Identities=19%  Similarity=0.232  Sum_probs=101.1

Q ss_pred             EEEEeCe-eeec---------CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC
Q psy17514          5 SMVLDGF-KSYG---------TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG   69 (159)
Q Consensus         5 ~l~l~~~-~~~~---------~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~   69 (159)
                      .|+++|+ +.|+         ++.++.+++     |++++|+|||||||||||++|+|+++|++|+|.++| .++.....
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~   80 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRG-QDLYQLDR   80 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEccccCH
Confidence            3789999 9995         356888888     789999999999999999999999999999999987 33211000


Q ss_pred             CC-ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEE
Q psy17514         70 QA-GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLI  144 (159)
Q Consensus        70 ~~-~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~  144 (159)
                      .. ...++.|++++|++..       .+++.+|+.+|+.+........ ......+++.++++.++|. .   ..+..+|
T Consensus        81 ~~~~~~~~~i~~v~q~~~~-------~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS  152 (265)
T TIGR02769        81 KQRRAFRRDVQLVFQDSPS-------AVNPRMTVRQIIGEPLRHLTSL-DESEQKARIAELLDMVGLRSEDADKLPRQLS  152 (265)
T ss_pred             HHHHHHhhceEEEecChhh-------hcCCCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCChhhhhCChhhCC
Confidence            00 0124579999998521       2445678888875432110111 1122345778899999995 2   3566777


Q ss_pred             e-Ch---hHhHhhcCCCC
Q psy17514        145 M-QG---RVTKVLNMKPH  158 (159)
Q Consensus       145 ~-q~---~ia~~l~~~p~  158 (159)
                      + |+   ++|++++.+|+
T Consensus       153 gGe~qrv~laral~~~p~  170 (265)
T TIGR02769       153 GGQLQRINIARALAVKPK  170 (265)
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            7 33   99999999986

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2e-22  Score=148.79  Aligned_cols=142  Identities=14%  Similarity=0.176  Sum_probs=99.8

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCc
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAG   72 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~   72 (159)
                      ..|+++|+ +.|+++.+|.+++     |++++|+|+||||||||+++|+|+++|     ++|+|.++| .++........
T Consensus        11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g-~~i~~~~~~~~   89 (258)
T PRK14268         11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG-EDIYEPDVDVV   89 (258)
T ss_pred             eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC-EEcccccchHH
Confidence            36899999 8998878888888     789999999999999999999999875     799999877 33211000011


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc----c---CCCeeEEe
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN----V---NNPHFLIM  145 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~---~~~~~l~~  145 (159)
                      ..++.++|++|++         .+++ .|+.+|+.+... .... ......+++.++++.+++.    .   ..+..+|+
T Consensus        90 ~~~~~i~~v~q~~---------~~~~-~tv~enl~~~~~-~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  157 (258)
T PRK14268         90 ELRKNVGMVFQKP---------NPFP-MSIYDNVAYGPR-IHGA-NKKDLDGVVENALRSAALWDETSDRLKSPALSLSG  157 (258)
T ss_pred             HHhhhEEEEecCC---------ccCc-ccHHHHHHHHHH-HcCC-CHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCH
Confidence            1245799999985         3555 789999876421 0100 1111234577889988873    1   34566766


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |.   +||++++.+|+
T Consensus       158 G~~qrv~laral~~~p~  174 (258)
T PRK14268        158 GQQQRLCIARTLAVKPK  174 (258)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence             33   99999999986

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4.8e-22  Score=147.42  Aligned_cols=142  Identities=16%  Similarity=0.196  Sum_probs=100.3

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|+++.+|++++     |++++|+|||||||||||++|+|++.     |++|+|.++| .++.........
T Consensus        20 ~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~   98 (267)
T PRK14237         20 ALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRG-IDINRKEINVYE   98 (267)
T ss_pred             EEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECC-EEcccccCChHH
Confidence            5899999 9998888899888     78999999999999999999999986     4799999887 333110000111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .++.|++++|++         .+++ .|+.+|+.++... ..........+++.++++.++|.       ...+..+|+ 
T Consensus        99 ~~~~i~~v~q~~---------~~~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G  167 (267)
T PRK14237         99 MRKHIGMVFQRP---------NPFA-KSIYENITFALER-AGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGG  167 (267)
T ss_pred             HhcceEEEecCC---------cccc-ccHHHHHHhHHHh-cCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHH
Confidence            356799999985         3455 4889998765220 00001112235567788888873       145667777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |.   ++||+++.+|+
T Consensus       168 ~~qrl~laral~~~p~  183 (267)
T PRK14237        168 QQQRLCIARAIAVKPD  183 (267)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999986

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.83  E-value=8e-23  Score=144.48  Aligned_cols=133  Identities=20%  Similarity=0.231  Sum_probs=90.5

Q ss_pred             cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCC
Q psy17514         15 GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKN   89 (159)
Q Consensus        15 ~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~   89 (159)
                      ++..++++++     +++++|+||||||||||+++|+|+++|++|+|.++| +++..........++.+++++|++..  
T Consensus         3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~i~~~~q~~~~--   79 (190)
T TIGR01166         3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDG-EPLDYSRKGLLERRQRVGLVFQDPDD--   79 (190)
T ss_pred             CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECC-EEccccccchHHHHhhEEEEecChhh--
Confidence            4455677776     789999999999999999999999999999999887 33211011111134579999998521  


Q ss_pred             CCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514         90 CPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus        90 ~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                           .++ ..|+.+|+.++..  ..........+++.++++.++|..   ..+..+|+ |+   ++|++++.+|+
T Consensus        80 -----~~~-~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  147 (190)
T TIGR01166        80 -----QLF-AADVDQDVAFGPL--NLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPD  147 (190)
T ss_pred             -----ccc-cccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence                 123 3588888876421  110011112346788899999964   45677777 33   99999999986

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.9e-22  Score=146.61  Aligned_cols=142  Identities=14%  Similarity=0.199  Sum_probs=99.1

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|+...++.+++     +++++|+|+||||||||+++|+|+++     |++|++.++| .++.........
T Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g-~~~~~~~~~~~~   82 (251)
T PRK14251          4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG-QNIYGSKMDLVE   82 (251)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC-EEcccccchHHH
Confidence            5899999 9998888888887     78999999999999999999999986     4789999887 332110000111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .++.+++++|++         .+++ .|+.+|+.+... ...........+++.++++.+++.       ...+..+|+ 
T Consensus        83 ~~~~i~~~~q~~---------~~~~-~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  151 (251)
T PRK14251         83 LRKEVGMVFQQP---------TPFP-FSVYDNVAYGLK-IAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGG  151 (251)
T ss_pred             hhccEEEEecCC---------ccCC-CcHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHH
Confidence            356799999985         3444 588898876422 010011111234677888888883       134567777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |.   +||++++.+|+
T Consensus       152 q~qr~~laral~~~p~  167 (251)
T PRK14251        152 QQQRICIARALAVRPK  167 (251)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999986

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4.8e-22  Score=146.18  Aligned_cols=144  Identities=14%  Similarity=0.164  Sum_probs=98.7

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc-----ccchhhhhHHHHHHhhCCCc
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ-----VKQVRANTLQELIYKNGQAG   72 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~-----~g~i~~~~~~~~~~~~~~~~   72 (159)
                      ..|+++|+ +.|++..++++++     +++++|+||||||||||+++|+|++.|.     +|+|.++| .++........
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g-~~~~~~~~~~~   81 (252)
T PRK14272          3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG-QDIYGPRVDPV   81 (252)
T ss_pred             EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC-EEcccCccCHH
Confidence            46999999 9998888899888     6899999999999999999999998764     79999887 33211000011


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM  145 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~  145 (159)
                      ..++.++|++|++         .+++.+|+.+|+.+... ...........+.+.++++.+++.       ...+..+|+
T Consensus        82 ~~~~~i~~~~q~~---------~~~~~~t~~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  151 (252)
T PRK14272         82 AMRRRVGMVFQKP---------NPFPTMSVFDNVVAGLK-LAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSG  151 (252)
T ss_pred             HhhceeEEEeccC---------ccCcCCCHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCH
Confidence            2356799999985         46666788888865321 010111111223455666666552       134566776


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   ++|++++.+|+
T Consensus       152 G~~qrv~laral~~~p~  168 (252)
T PRK14272        152 GQQQRLCIARALAVEPE  168 (252)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence             33   99999999986

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=5.8e-22  Score=148.18  Aligned_cols=140  Identities=14%  Similarity=0.137  Sum_probs=100.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..+|++++     +++++|+||||||||||+++|+|++.     |++|+|.++| .++.........
T Consensus        39 ~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G-~~i~~~~~~~~~  117 (285)
T PRK14254         39 VIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG-KNVYDADVDPVA  117 (285)
T ss_pred             eEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC-EEccccccchHh
Confidence            4899999 9998878888887     78999999999999999999999986     5899999887 332110000112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .++.+++++|++         .+++. ++.+|+.+...  .... .....+++.++++.+++.       ...+..||+ 
T Consensus       118 ~~~~i~~v~q~~---------~l~~~-tv~enl~~~~~--~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgG  184 (285)
T PRK14254        118 LRRRIGMVFQKP---------NPFPK-SIYDNVAYGLK--IQGY-DGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGG  184 (285)
T ss_pred             hhccEEEEecCC---------ccCcC-CHHHHHHHHHH--HcCC-cHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHH
Confidence            356799999985         34554 88888875421  1100 112245678889998874       245677777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +||++++.+|+
T Consensus       185 e~qrv~LAraL~~~p~  200 (285)
T PRK14254        185 QQQRLCIARAIAPDPE  200 (285)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            33   99999999986

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=2.2e-22  Score=149.89  Aligned_cols=141  Identities=19%  Similarity=0.226  Sum_probs=101.2

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ +.|++   ..++.+++     |++++|+|+||||||||+++|+|+++|++|+|.++| .++.. .. ....+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~i~~-~~-~~~~~   80 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG-ELLTA-EN-VWNLR   80 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC-EECCc-CC-HHHHh
Confidence            4899999 99974   34788887     789999999999999999999999999999999987 33210 00 11135


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R  148 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~  148 (159)
                      ..++|++|++.        ..++..|+.+|+.++... ... ......+++.++++.++|..   ..+..+|+ |+   +
T Consensus        81 ~~i~~v~q~~~--------~~~~~~tv~eni~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~  150 (277)
T PRK13642         81 RKIGMVFQNPD--------NQFVGATVEDDVAFGMEN-QGI-PREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVA  150 (277)
T ss_pred             cceEEEEECHH--------HhhccCCHHHHHHhhHHH-cCC-CHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH
Confidence            67999999852        234456888998764220 000 11112346778899999865   45677777 33   9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      ||++++.+|+
T Consensus       151 lAraL~~~p~  160 (277)
T PRK13642        151 VAGIIALRPE  160 (277)
T ss_pred             HHHHHHcCCC
Confidence            9999999996

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=7.3e-22  Score=145.34  Aligned_cols=141  Identities=13%  Similarity=0.183  Sum_probs=99.2

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..+|++++     |++++|+||||||||||+++|+|+..+     ++|++.++| .++.........
T Consensus         6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~   84 (253)
T PRK14261          6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG-ENIMDSGADVVA   84 (253)
T ss_pred             eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC-EEccccccchhh
Confidence            6899999 9998888899888     789999999999999999999998753     479999887 333211001112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCccc-------CCCeeEEe
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~  145 (159)
                      .++.+++++|++         .+++. |+.+|+.+...  ... .......+.+.++++.+++..       ..+..+|+
T Consensus        85 ~~~~i~~~~q~~---------~~~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  152 (253)
T PRK14261         85 LRRKIGMVFQRP---------NPFPK-SIYENVAYGPR--IHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG  152 (253)
T ss_pred             hhceEEEEecCC---------ccCcc-cHHHHHHhhHH--hcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCH
Confidence            356799999985         35554 89999876532  110 011122345677888887731       34566776


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   ++|++++.+|+
T Consensus       153 G~~qrv~laral~~~p~  169 (253)
T PRK14261        153 GQQQRLCIARTLAVNPE  169 (253)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence             33   99999999986

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.83  E-value=5.5e-22  Score=143.51  Aligned_cols=142  Identities=11%  Similarity=0.121  Sum_probs=98.8

Q ss_pred             EEEeCe-eeecC-------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhH-H--HHHHhhC
Q psy17514          6 MVLDGF-KSYGT-------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTL-Q--ELIYKNG   69 (159)
Q Consensus         6 l~l~~~-~~~~~-------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~-~--~~~~~~~   69 (159)
                      |+++|+ +.|+.       ..++++++     +++++|+||||||||||+++|+|+++|++|+|.+++. .  ++.....
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~   81 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP   81 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence            789999 99962       36888887     7899999999999999999999999999999988631 1  2211000


Q ss_pred             CC--ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeE
Q psy17514         70 QA--GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFL  143 (159)
Q Consensus        70 ~~--~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l  143 (159)
                      ..  ...++.+++++|++         .+++.+|+.+++.+.... .. .......+++.++++.+++..    ..+..+
T Consensus        82 ~~~~~~~~~~i~~~~q~~---------~~~~~~tv~e~l~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  150 (224)
T TIGR02324        82 REVLEVRRKTIGYVSQFL---------RVIPRVSALEVVAEPLLE-RG-VPREAARARARELLARLNIPERLWHLPPATF  150 (224)
T ss_pred             HHHHHHHhcceEEEeccc---------ccCCCccHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence            00  01235699999985         366777888887653210 10 011122456788899999864    245667


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   ++|++++.+|+
T Consensus       151 S~G~~qrl~laral~~~p~  169 (224)
T TIGR02324       151 SGGEQQRVNIARGFIADYP  169 (224)
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            76 33   99999999985

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.83  E-value=5.7e-22  Score=142.61  Aligned_cols=134  Identities=13%  Similarity=0.101  Sum_probs=100.9

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ ++|+++.++.+++     |++++|+|+||||||||+++|+|+++|++|++.+++ +++..     ...++.+
T Consensus        11 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~i~~-----~~~~~~i   84 (214)
T PRK13543         11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG-KTATR-----GDRSRFM   84 (214)
T ss_pred             eEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECC-EEccc-----hhhhhce
Confidence            4899999 9998888889888     789999999999999999999999999999999887 33211     0123468


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      ++++|++         .+++.+|+.+|+.+...  +  .+. ...+.+.++++.++|..   ..+..+|+ |+   ++|+
T Consensus        85 ~~~~q~~---------~~~~~~t~~e~l~~~~~--~--~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  150 (214)
T PRK13543         85 AYLGHLP---------GLKADLSTLENLHFLCG--L--HGR-RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALAR  150 (214)
T ss_pred             EEeecCc---------ccccCCcHHHHHHHHHH--h--cCC-cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHH
Confidence            9999875         35666788888765321  1  111 12356678899999864   45667777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       151 al~~~p~  157 (214)
T PRK13543        151 LWLSPAP  157 (214)
T ss_pred             HHhcCCC
Confidence            9999986

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.83  E-value=3.9e-22  Score=147.86  Aligned_cols=143  Identities=15%  Similarity=0.255  Sum_probs=98.9

Q ss_pred             EEEEeCe-eeecC---------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC
Q psy17514          5 SMVLDGF-KSYGT---------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG   69 (159)
Q Consensus         5 ~l~l~~~-~~~~~---------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~   69 (159)
                      .|+++|+ +.|+.         ..++.+++     +++++|+|||||||||||++|+|+++|++|+|.++| .++.. ..
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~   81 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDD-HPLHF-GD   81 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECC-EECCC-Cc
Confidence            4899999 99962         45788887     689999999999999999999999999999999887 33211 11


Q ss_pred             CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe
Q psy17514         70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM  145 (159)
Q Consensus        70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~  145 (159)
                       ....++.+++++|++..       .+++.+++.+++.+........ ......+++.++++.++|. .   ..+..+|+
T Consensus        82 -~~~~~~~i~~v~q~~~~-------~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~  152 (267)
T PRK15112         82 -YSYRSQRIRMIFQDPST-------SLNPRQRISQILDFPLRLNTDL-EPEQREKQIIETLRQVGLLPDHASYYPHMLAP  152 (267)
T ss_pred             -hhhHhccEEEEecCchh-------hcCcchhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHcCCChHHHhcCchhcCH
Confidence             11124579999998521       1345566766665432100000 1112235678899999995 2   34567777


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   ++|++++.+|+
T Consensus       153 G~~qrv~laral~~~p~  169 (267)
T PRK15112        153 GQKQRLGLARALILRPK  169 (267)
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence             33   99999999986

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.83  E-value=3.4e-22  Score=146.18  Aligned_cols=142  Identities=15%  Similarity=0.144  Sum_probs=97.7

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      |+++|+ +.|++..+|.+++     |++++|+||||||||||+++|+|++  .|++|+|.++| +++.. .......+..
T Consensus         1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g-~~~~~-~~~~~~~~~~   78 (243)
T TIGR01978         1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG-QDLLE-LEPDERARAG   78 (243)
T ss_pred             CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECC-EecCC-CCHHHhhccc
Confidence            478899 9998888899888     6899999999999999999999995  68999999987 33211 0000112345


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEE-C--CEEeCHHHHHHHHHhcCccc---C-CCe-eEEe-C
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMI-N--GSSVNPKRVSDLFSSVNLNV---N-NPH-FLIM-Q  146 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~-~--~~~~~~~~~~~~l~~~~l~~---~-~~~-~l~~-q  146 (159)
                      +++++|++         .+++.+|+.+++.+.....  ... .  ......+++.++++.++|..   + .+. .+|+ |
T Consensus        79 i~~v~q~~---------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~  149 (243)
T TIGR01978        79 LFLAFQYP---------EEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGE  149 (243)
T ss_pred             eEeeeccc---------cccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHH
Confidence            89999985         3566778887775432100  000 0  01111356788899999962   2 333 3777 3


Q ss_pred             h---hHhHhhcCCCC
Q psy17514        147 G---RVTKVLNMKPH  158 (159)
Q Consensus       147 ~---~ia~~l~~~p~  158 (159)
                      +   ++|++++.+|+
T Consensus       150 ~qrl~la~al~~~p~  164 (243)
T TIGR01978       150 KKRNEILQMALLEPK  164 (243)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            3   99999999986

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=7.1e-22  Score=145.24  Aligned_cols=141  Identities=18%  Similarity=0.223  Sum_probs=99.5

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc-----ccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ-----VKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~-----~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++.+++     |++++|+||||||||||+++|+|++.|+     +|+|.+++ .++.........
T Consensus         4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g-~~~~~~~~~~~~   82 (251)
T PRK14249          4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN-ENIYSPNLDVVN   82 (251)
T ss_pred             eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC-EEccccccChHH
Confidence            4889999 9998877888887     7899999999999999999999999987     59998887 332110001112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE-ECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM-INGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~  145 (159)
                      .++.+++++|++         .+++. |+.+|+.+...  +. ........+.+.++++.+++.       ...+..+|+
T Consensus        83 ~~~~i~~v~q~~---------~~~~~-tv~enl~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  150 (251)
T PRK14249         83 LRKRVGMVFQQP---------NPFPK-SIFDNVAFGPR--MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSG  150 (251)
T ss_pred             hhceEEEEecCC---------ccCcC-cHHHHHhhHHH--hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCH
Confidence            356799999985         35554 88899876532  11 000111234566677777763       245677777


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |.   ++||+++.+|+
T Consensus       151 Gq~qrv~laral~~~p~  167 (251)
T PRK14249        151 GQQQRLCIARVLAIEPE  167 (251)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence             33   99999999986

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.83  E-value=2.6e-22  Score=146.31  Aligned_cols=136  Identities=13%  Similarity=0.226  Sum_probs=99.7

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++. ++++++     +++++|+||||||||||+++|+|+++|++|+++++| .++..    ....++.++
T Consensus         1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g-~~~~~----~~~~~~~i~   74 (235)
T cd03299           1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNG-KDITN----LPPEKRDIS   74 (235)
T ss_pred             CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-EEcCc----CChhHcCEE
Confidence            468889 888764 678887     689999999999999999999999999999999988 33211    011246799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|++         .+++.+|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |.   +||++
T Consensus        75 ~~~q~~---------~~~~~~t~~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara  143 (235)
T cd03299          75 YVPQNY---------ALFPHMTVYKNIAYGLK--KRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARA  143 (235)
T ss_pred             EEeecC---------ccCCCccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHH
Confidence            999985         46677899998875421  100011223456778899999964   45667776 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       144 l~~~p~  149 (235)
T cd03299         144 LVVNPK  149 (235)
T ss_pred             HHcCCC
Confidence            999986

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.83  E-value=3e-21  Score=141.93  Aligned_cols=122  Identities=16%  Similarity=0.227  Sum_probs=92.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..++.+++     +++++|+||||||||||+++|+|+++|++|+|.+.+              +..+
T Consensus         4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~--------------~~~i   69 (251)
T PRK09544          4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG--------------KLRI   69 (251)
T ss_pred             EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC--------------ccCE
Confidence            5899999 9998888888887     789999999999999999999999999999998754              2359


Q ss_pred             EEEEEcCCCCCCCCCccCCCe--EEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNT--IVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~--~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      +|++|++.         +++.  .++.+++.+.         .....+++.++++.++|..   ..+..+|+ |+   ++
T Consensus        70 ~~v~q~~~---------~~~~l~~~~~~~~~~~---------~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l  131 (251)
T PRK09544         70 GYVPQKLY---------LDTTLPLTVNRFLRLR---------PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLL  131 (251)
T ss_pred             EEeccccc---------cccccChhHHHHHhcc---------ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHH
Confidence            99999852         2222  2343333221         1112456788999999965   45667777 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |++++.+|+
T Consensus       132 aral~~~p~  140 (251)
T PRK09544        132 ARALLNRPQ  140 (251)
T ss_pred             HHHHhcCCC
Confidence            999999986

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=7.3e-22  Score=145.84  Aligned_cols=143  Identities=15%  Similarity=0.140  Sum_probs=100.0

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCc
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAG   72 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~   72 (159)
                      ..|+++|+ +.|++..++++++     |++++|+|+||||||||+++|+|++++     ++|++.++| +++........
T Consensus         6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g-~~i~~~~~~~~   84 (259)
T PRK14260          6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG-QNIYDPRININ   84 (259)
T ss_pred             ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC-EeccccccchH
Confidence            46899999 9998878888887     789999999999999999999999885     479999887 33321001111


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM  145 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~  145 (159)
                      ..+..|++++|++         .+++ .|+.+|+.++... ..........+.+.++++.+++.       ...+..+|+
T Consensus        85 ~~~~~i~~v~q~~---------~l~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  153 (259)
T PRK14260         85 RLRRQIGMVFQRP---------NPFP-MSIYENVAYGVRI-SAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSG  153 (259)
T ss_pred             hhhhheEEEeccc---------ccCC-ccHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence            2346799999985         3555 7899998764220 00001111234567788888873       134567776


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   +|||+++.+|+
T Consensus       154 G~~qrv~laral~~~p~  170 (259)
T PRK14260        154 GQQQRLCIARALAIKPK  170 (259)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence             33   99999999986

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.83  E-value=6.4e-22  Score=146.98  Aligned_cols=138  Identities=14%  Similarity=0.102  Sum_probs=97.1

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc--------ccchhhhhHHHHHHhhCCC
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ--------VKQVRANTLQELIYKNGQA   71 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~--------~g~i~~~~~~~~~~~~~~~   71 (159)
                      |+++|+ +.|++..+|.++|     |++++|+||||||||||+++|+|+++|+        +|+|.++| .++....  .
T Consensus         2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g-~~~~~~~--~   78 (272)
T PRK13547          2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG-EPLAAID--A   78 (272)
T ss_pred             eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECC-EEcccCC--H
Confidence            789999 9998888899888     7899999999999999999999999987        89999887 3321100  0


Q ss_pred             ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC--EEeCHHHHHHHHHhcCccc---CCCeeEEe-
Q psy17514         72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING--SSVNPKRVSDLFSSVNLNV---NNPHFLIM-  145 (159)
Q Consensus        72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~---~~~~~l~~-  145 (159)
                      ...++.+++++|++.         .+..+|+.+|+.++........+  .....+.+.++++.+++..   ..+..+|+ 
T Consensus        79 ~~~~~~~~~v~q~~~---------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG  149 (272)
T PRK13547         79 PRLARLRAVLPQAAQ---------PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGG  149 (272)
T ss_pred             HHHHhhcEEecccCC---------CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHH
Confidence            112345899999852         23346888888764311100001  0112345778899999975   45667777 


Q ss_pred             Ch---hHhHhhcC
Q psy17514        146 QG---RVTKVLNM  155 (159)
Q Consensus       146 q~---~ia~~l~~  155 (159)
                      |+   +||++++.
T Consensus       150 ~~qrv~laral~~  162 (272)
T PRK13547        150 ELARVQFARVLAQ  162 (272)
T ss_pred             HHHHHHHHHHHhc
Confidence            33   99999994

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=3.3e-22  Score=149.18  Aligned_cols=142  Identities=16%  Similarity=0.210  Sum_probs=98.3

Q ss_pred             EEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--CCCc
Q psy17514          6 MVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--GQAG   72 (159)
Q Consensus         6 l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~~~~   72 (159)
                      |+++|+ +.|++     ..+|.+++     +++++|+||||||||||+++|+|+++|++|+|.++| .++....  ....
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g-~~i~~~~~~~~~~   81 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDD-TLITSTSKNKDIK   81 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccccccccCHH
Confidence            789999 99964     35788887     689999999999999999999999999999999987 3321100  0001


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG  147 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~  147 (159)
                      ..++.|+|++|++..       .+++ .|+.+|+.+...  ..........+.+.++++.++|..    ..+..+|+ |+
T Consensus        82 ~~~~~i~~~~q~~~~-------~~~~-~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~  151 (280)
T PRK13649         82 QIRKKVGLVFQFPES-------QLFE-ETVLKDVAFGPQ--NFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQM  151 (280)
T ss_pred             HHHhheEEEeeChhh-------hhcc-ccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence            134579999998521       1333 588888875421  110011122345678899999962    34567777 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         ++|++++.+|+
T Consensus       152 qrv~la~al~~~p~  165 (280)
T PRK13649        152 RRVAIAGILAMEPK  165 (280)
T ss_pred             HHHHHHHHHHcCCC
Confidence               99999999985

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.83  E-value=1.5e-21  Score=156.72  Aligned_cols=143  Identities=12%  Similarity=0.120  Sum_probs=100.8

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhH----------------
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTL----------------   61 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~----------------   61 (159)
                      |+++|+ ++|+++.++++++     |++++|+|||||||||||++|+|++  .|++|+|.+.+.                
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~   80 (520)
T TIGR03269         1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE   80 (520)
T ss_pred             CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence            478999 9998878888888     7899999999999999999999997  689999887510                


Q ss_pred             ------HHH-------HHhhC-CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHH
Q psy17514         62 ------QEL-------IYKNG-QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVS  127 (159)
Q Consensus        62 ------~~~-------~~~~~-~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~  127 (159)
                            .++       ..... .....++.++++||++        ..+++.+|+.+|+.++... ... ......+++.
T Consensus        81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~--------~~~~~~~tv~~~l~~~~~~-~~~-~~~~~~~~~~  150 (520)
T TIGR03269        81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT--------FALYGDDTVLDNVLEALEE-IGY-EGKEAVGRAV  150 (520)
T ss_pred             ccccccccccccchhhhccCHHHHHHhhhcEEEEeccc--------cccCCCCCHHHHHHHHHHH-cCC-CHHHHHHHHH
Confidence                  110       00000 0001245799999973        1356667888988764220 111 1112245788


Q ss_pred             HHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        128 DLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       128 ~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      ++++.++|..   ..+..||+ |+   +||++|+.+|+
T Consensus       151 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~  188 (520)
T TIGR03269       151 DLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPF  188 (520)
T ss_pred             HHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence            8999999965   45778888 33   99999999996

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.83  E-value=1.8e-22  Score=146.62  Aligned_cols=137  Identities=14%  Similarity=0.201  Sum_probs=97.5

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++++++     +++++|+||||||||||+++|+|+++|++|++.+++ .++.. .......++.++
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~-~~~~~~~~~~i~   78 (230)
T TIGR03410         1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG-EDITK-LPPHERARAGIA   78 (230)
T ss_pred             CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC-EECCC-CCHHHHHHhCeE
Confidence            468899 9998878888888     789999999999999999999999999999999887 22210 000011245799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcC-ccc---CCCeeEEe-Ch---hHhH
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVN-LNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~---~~~~~l~~-q~---~ia~  151 (159)
                      |++|++         .+++.+|+.+|+.+...  ..  +. ...+...++++.++ +..   ..+..+|+ |.   ++|+
T Consensus        79 ~~~q~~---------~~~~~~tv~~~l~~~~~--~~--~~-~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~  144 (230)
T TIGR03410        79 YVPQGR---------EIFPRLTVEENLLTGLA--AL--PR-RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIAR  144 (230)
T ss_pred             EeccCC---------cccCCCcHHHHHHHHHH--hc--Cc-chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHH
Confidence            999985         36677799988876422  11  11 11234466666665 332   45667777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       145 al~~~p~  151 (230)
T TIGR03410       145 ALVTRPK  151 (230)
T ss_pred             HHhcCCC
Confidence            9999986

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.83  E-value=7.8e-19  Score=128.87  Aligned_cols=143  Identities=34%  Similarity=0.554  Sum_probs=97.4

Q ss_pred             EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--CceeEEEEEE
Q psy17514          3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--AGVTKASVTL   80 (159)
Q Consensus         3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~~~i~~   80 (159)
                      +.+|+++||++|.+...+. +...+++|+|||||||||||++|++++.+..|+++..+..++++.+..  .....+.|.+
T Consensus         1 i~~i~l~nf~~~~~~~~~~-~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~   79 (247)
T cd03275           1 LKRLELENFKSYKGRHVIG-PFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTA   79 (247)
T ss_pred             CcEEEEECccccCCCeeec-CCCCeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEE
Confidence            3579999999998765443 446799999999999999999999999988888887765666654321  1112567788


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP  157 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p  157 (159)
                      +|+..+.          ....+.+.+.-+ ...+.++++....+++.++++.++++...+..+..||.+.++..+.|
T Consensus        80 ~f~~~~~----------~~~~~~~~~~~~-~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p  145 (247)
T cd03275          80 VYEDDDG----------EEKTFRRIITGG-SSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNP  145 (247)
T ss_pred             EEEcCCC----------cEEEEEEEEECC-ceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccC
Confidence            8875421          223445444333 33567888888888889999999997543333344444444444433

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.1e-21  Score=144.07  Aligned_cols=141  Identities=16%  Similarity=0.230  Sum_probs=98.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|+++.++++++     |++++|+||||||||||+++|+|+.+|     ++|++.++| .++.. ......
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g-~~~~~-~~~~~~   80 (249)
T PRK14253          3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG-EDIYG-NIDVAD   80 (249)
T ss_pred             eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC-EEccc-ccchHH
Confidence            5899999 9998888899888     689999999999999999999999886     489998887 22210 000112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-  145 (159)
                      .++.++|++|++         .+++ .|+.+|+.+.... ..........+++.++++.+++..       ..+..+|+ 
T Consensus        81 ~~~~i~~~~q~~---------~~~~-~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G  149 (249)
T PRK14253         81 LRIKVGMVFQKP---------NPFP-MSIYENVAYGLRA-QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGG  149 (249)
T ss_pred             HHhheeEEecCC---------CcCc-ccHHHHHHhHHHh-cCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHH
Confidence            356799999985         3555 6888888764210 100011122345677788887631       34566776 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +|||+++.+|+
T Consensus       150 ~~qrv~laral~~~p~  165 (249)
T PRK14253        150 QQQRLCIARTIAMEPD  165 (249)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            33   99999999986

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2.4e-21  Score=143.47  Aligned_cols=140  Identities=14%  Similarity=0.134  Sum_probs=98.0

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++.+++     +++++|+|+||||||||+++|+|+..     |++|+|++++ .++.........
T Consensus        10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~   88 (264)
T PRK14243         10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG-KNLYAPDVDPVE   88 (264)
T ss_pred             EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC-EEccccccChHH
Confidence            4899999 9998878889888     78999999999999999999999986     3789999887 332110001112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .++.+++++|++         .+++ .|+.+|+.++..  .... .....+++.++++.+++.       ...+..+|+ 
T Consensus        89 ~~~~i~~v~q~~---------~~~~-~tv~enl~~~~~--~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG  155 (264)
T PRK14243         89 VRRRIGMVFQKP---------NPFP-KSIYDNIAYGAR--INGY-KGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGG  155 (264)
T ss_pred             HhhhEEEEccCC---------cccc-ccHHHHHHhhhh--hcCc-chHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHH
Confidence            356799999985         3455 388888876532  1100 111234566677777763       135667777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +|||+++.+|+
T Consensus       156 q~qrv~laral~~~p~  171 (264)
T PRK14243        156 QQQRLCIARAIAVQPE  171 (264)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999996

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1e-21  Score=146.98  Aligned_cols=142  Identities=19%  Similarity=0.194  Sum_probs=98.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++.+++     |++++|+||||||||||+++|+|+..     |++|+|.++| .++.........
T Consensus        39 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g-~~i~~~~~~~~~  117 (286)
T PRK14275         39 HVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG-EDIYGKFTDEVL  117 (286)
T ss_pred             EEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC-EEhhhcccchHH
Confidence            4889999 9998777888887     78999999999999999999999864     4899999887 333211111111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .++.++|++|++         .+++. |+.+|+.++... ..........+++.++++.+++.       ...+..+|+ 
T Consensus       118 ~~~~i~~v~q~~---------~l~~~-tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG  186 (286)
T PRK14275        118 LRKKIGMVFQKP---------NPFPK-SIFDNIAYGPRL-HGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGG  186 (286)
T ss_pred             hhhcEEEECCCC---------CCCcc-CHHHHHHhHHHh-cCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHH
Confidence            356799999985         34553 899998764210 00111111234567788888763       145667777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   ++|++++.+|+
T Consensus       187 q~qrv~LAraL~~~p~  202 (286)
T PRK14275        187 QQQRLCVARTLAVEPE  202 (286)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999985

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=4.6e-22  Score=149.04  Aligned_cols=143  Identities=17%  Similarity=0.245  Sum_probs=99.0

Q ss_pred             EEEEeCe-eeecCC-----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh--h-CC
Q psy17514          5 SMVLDGF-KSYGTR-----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK--N-GQ   70 (159)
Q Consensus         5 ~l~l~~~-~~~~~~-----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~--~-~~   70 (159)
                      .|+++|+ +.|++.     .++.+++     |++++|+||||||||||+++|+|+++|++|++.++| .++...  . ..
T Consensus         6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~~~~~   84 (289)
T PRK13645          6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGD-YAIPANLKKIKE   84 (289)
T ss_pred             eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EEcccccccccc
Confidence            5899999 999764     3788887     789999999999999999999999999999998877 222100  0 00


Q ss_pred             CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-
Q psy17514         71 AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-  145 (159)
Q Consensus        71 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-  145 (159)
                      ....++.|++++|++.       ..+++ .|+.+|+.++..  ..........+++.++++.++|. .   ..+..+|+ 
T Consensus        85 ~~~~~~~i~~v~q~~~-------~~~~~-~tv~enl~~~~~--~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~G  154 (289)
T PRK13645         85 VKRLRKEIGLVFQFPE-------YQLFQ-ETIEKDIAFGPV--NLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGG  154 (289)
T ss_pred             HHHHhccEEEEEeCcc-------hhhhh-hHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHH
Confidence            1113467999999852       11233 488888876421  11001111234567888999984 2   45667777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +||++++.+|+
T Consensus       155 q~qrv~laral~~~p~  170 (289)
T PRK13645        155 QKRRVALAGIIAMDGN  170 (289)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            33   99999999986

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.82  E-value=2e-21  Score=143.09  Aligned_cols=137  Identities=11%  Similarity=0.082  Sum_probs=96.3

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC----cccchhhhhHHHHHHhhCCCcee
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI----QVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~----~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      .|+++|+ +.| +..++.+++     |++++|+||||||||||+++|+|+++|    ++|+|+++| +++..    ....
T Consensus         4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g-~~i~~----~~~~   77 (254)
T PRK10418          4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG-KPVAP----CALR   77 (254)
T ss_pred             EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC-eeccc----cccc
Confidence            6899999 999 567888887     789999999999999999999999998    899999887 33211    1112


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc------CCCeeEEe-Ch
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV------NNPHFLIM-QG  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~l~~-q~  147 (159)
                      ++.+++++|++..       .+.+..++.+++..... ..   +.....+++.++++.++|..      ..+..+|+ |+
T Consensus        78 ~~~i~~v~q~~~~-------~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~  146 (254)
T PRK10418         78 GRKIATIMQNPRS-------AFNPLHTMHTHARETCL-AL---GKPADDATLTAALEAVGLENAARVLKLYPFEMSGGML  146 (254)
T ss_pred             cceEEEEecCCcc-------ccCccccHHHHHHHHHH-Hc---CCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHH
Confidence            4579999998521       12233455444432111 01   11122367888999999863      34567777 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         +||++++.+|+
T Consensus       147 qrv~laral~~~p~  160 (254)
T PRK10418        147 QRMMIALALLCEAP  160 (254)
T ss_pred             HHHHHHHHHhcCCC
Confidence               99999999986

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.82  E-value=2.9e-22  Score=152.43  Aligned_cols=145  Identities=14%  Similarity=0.157  Sum_probs=102.5

Q ss_pred             EEEEeCe-eeec----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhhCC-
Q psy17514          5 SMVLDGF-KSYG----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKNGQ-   70 (159)
Q Consensus         5 ~l~l~~~-~~~~----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~~~-   70 (159)
                      .|+++|+ +.|.    ...+++++|     |++++|+|+||||||||+++|+|+++|.   +|+|.++| .++...... 
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G-~~i~~~~~~~   90 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNG-REILNLPEKE   90 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECC-EECCcCCHHH
Confidence            5899999 9995    246788887     7899999999999999999999999885   89999987 333211000 


Q ss_pred             -CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc------CCCeeE
Q psy17514         71 -AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV------NNPHFL  143 (159)
Q Consensus        71 -~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~l  143 (159)
                       ....++.|+|+||++..       .+++.+++.+++...... ..........+++.++++.++|..      .+|.+|
T Consensus        91 ~~~~r~~~i~~v~Q~~~~-------~l~p~~~v~~~i~~~~~~-~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~L  162 (330)
T PRK09473         91 LNKLRAEQISMIFQDPMT-------SLNPYMRVGEQLMEVLML-HKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEF  162 (330)
T ss_pred             HHHHhcCCEEEEEcCchh-------hcCCCCCHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccC
Confidence             00123579999999631       356677887776543210 100011222456788999999863      378888


Q ss_pred             Ee---Ch-hHhHhhcCCCC
Q psy17514        144 IM---QG-RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~---q~-~ia~~l~~~p~  158 (159)
                      |+   |+ +||++|+.+|+
T Consensus       163 SgG~~QRv~IArAL~~~P~  181 (330)
T PRK09473        163 SGGMRQRVMIAMALLCRPK  181 (330)
T ss_pred             CHHHHHHHHHHHHHHcCCC
Confidence            88   33 99999999996

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.82  E-value=5.1e-22  Score=158.75  Aligned_cols=140  Identities=16%  Similarity=0.202  Sum_probs=101.7

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC--cccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI--QVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      |+++|+ +.|++..++++++     |++++|+||||||||||+++|+|+++|  ++|+|.++| +++.. .......+..
T Consensus         2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g-~~~~~-~~~~~~~~~~   79 (500)
T TIGR02633         2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSG-SPLKA-SNIRDTERAG   79 (500)
T ss_pred             EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC-EECCC-CCHHHHHhCC
Confidence            789999 9998888888888     789999999999999999999999986  799999877 22210 0000112356


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC----CEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch-
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN----GSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG-  147 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~-  147 (159)
                      ++++||++         .+++.+|+.+|+.++..  +...    ......+++.++++.++|..    ..+..+|+ |+ 
T Consensus        80 i~~v~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q  148 (500)
T TIGR02633        80 IVIIHQEL---------TLVPELSVAENIFLGNE--ITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQ  148 (500)
T ss_pred             EEEEeecc---------ccCCCCcHHHHHHhhcc--ccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHH
Confidence            99999985         36677899998876532  1100    11122356788999999964    23567777 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        +||++++.+|+
T Consensus       149 rv~iA~al~~~p~  161 (500)
T TIGR02633       149 LVEIAKALNKQAR  161 (500)
T ss_pred             HHHHHHHHhhCCC
Confidence              99999999986

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.82  E-value=4.4e-22  Score=158.82  Aligned_cols=140  Identities=11%  Similarity=0.199  Sum_probs=99.9

Q ss_pred             EeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514          8 LDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT   81 (159)
Q Consensus         8 l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v   81 (159)
                      ++|+ +.|++..++++++     |++++|+||||||||||+++|+|+++|++|+|.++| +++.. .......++.++++
T Consensus         1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i~~v   78 (491)
T PRK10982          1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG-KEIDF-KSSKEALENGISMV   78 (491)
T ss_pred             CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC-EECCC-CCHHHHHhCCEEEE
Confidence            3678 8898878888888     789999999999999999999999999999999887 32210 00001124569999


Q ss_pred             EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhh
Q psy17514         82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVL  153 (159)
Q Consensus        82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l  153 (159)
                      +|++         .+++.+||.+|+.++....... .......+++.++++.+++..   ..+..||+ |+   +||+++
T Consensus        79 ~q~~---------~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al  149 (491)
T PRK10982         79 HQEL---------NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAF  149 (491)
T ss_pred             eccc---------ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence            9985         3566779999987653110000 011112346788999999864   45677877 33   999999


Q ss_pred             cCCCC
Q psy17514        154 NMKPH  158 (159)
Q Consensus       154 ~~~p~  158 (159)
                      +.+|+
T Consensus       150 ~~~p~  154 (491)
T PRK10982        150 SYNAK  154 (491)
T ss_pred             HhCCC
Confidence            99986

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.6e-21  Score=143.34  Aligned_cols=141  Identities=11%  Similarity=0.140  Sum_probs=98.1

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCcee
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      |+++|+ +.|+++.++.+++     +++++|+||||||||||+++|+|+..     |++|++.++| .++..........
T Consensus         4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g-~~i~~~~~~~~~~   82 (250)
T PRK14266          4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG-VDIYDPAVDVVEL   82 (250)
T ss_pred             EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC-EEcccccccHHHH
Confidence            889999 9998878888887     78999999999999999999999875     3789999887 3321100001113


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-C
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-Q  146 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-q  146 (159)
                      ++.+++++|++         .+++. |+.+|+.++... ..........+++.++++.+++..       ..+..+|+ |
T Consensus        83 ~~~i~~~~q~~---------~~~~~-t~~~nl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq  151 (250)
T PRK14266         83 RKKVGMVFQKP---------NPFPK-SIFDNVAYGLRI-HGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQ  151 (250)
T ss_pred             hhheEEEecCC---------ccCcc-hHHHHHHhHHhh-cCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHH
Confidence            56799999985         35554 888888764210 100111122356778888888731       34556666 3


Q ss_pred             h---hHhHhhcCCCC
Q psy17514        147 G---RVTKVLNMKPH  158 (159)
Q Consensus       147 ~---~ia~~l~~~p~  158 (159)
                      +   +||++++.+|+
T Consensus       152 ~qrv~laral~~~p~  166 (250)
T PRK14266        152 QQRLCIARTIAVSPE  166 (250)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            3   99999999986

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.82  E-value=3.5e-21  Score=155.64  Aligned_cols=133  Identities=14%  Similarity=0.081  Sum_probs=100.5

Q ss_pred             EEEEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          3 IKSMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         3 ~~~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      ...|+++|+ +.|+ ++.+|.+++     |++++|+|||||||||||++|+|+++|++|+|.+.+              .
T Consensus         4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~--------------~   69 (556)
T PRK11819          4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP--------------G   69 (556)
T ss_pred             cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--------------C
Confidence            457999999 9998 788999998     789999999999999999999999999999998743              1


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-------------EEECC---------------------EEe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-------------YMING---------------------SSV  121 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-------------~~~~~---------------------~~~  121 (159)
                      ..|++++|++         .+++.+|+.+|+.++....             .....                     ...
T Consensus        70 ~~i~~v~Q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (556)
T PRK11819         70 IKVGYLPQEP---------QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD  140 (556)
T ss_pred             CEEEEEecCC---------CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccc
Confidence            3599999985         4567789999987642100             00000                     001


Q ss_pred             CHHHHHHHHHhcCccc--CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        122 NPKRVSDLFSSVNLNV--NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       122 ~~~~~~~~l~~~~l~~--~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      ..+++.++++.++|..  ..+..+|+ |+   +||++++.+|+
T Consensus       141 ~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~  183 (556)
T PRK11819        141 LDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPD  183 (556)
T ss_pred             hHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCC
Confidence            1356778899999853  34567777 33   99999999986

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.3e-21  Score=143.86  Aligned_cols=142  Identities=15%  Similarity=0.167  Sum_probs=98.2

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh---CC--cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL---GI--QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~---~~--~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|+++.++.+++     |++++|+||||||||||+++|+|+.   ++  ++|++.++| .++.........
T Consensus         3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~   81 (250)
T PRK14245          3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG-RNIYDKGVQVDE   81 (250)
T ss_pred             EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC-EecccccccHHH
Confidence            5889999 9998888888887     7999999999999999999999973   44  489999988 333211100112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-  145 (159)
                      .++.++|++|++         .+++ .|+.+|+.++... ..........+++.++++.+++..       ..+..+|+ 
T Consensus        82 ~~~~i~~v~q~~---------~~~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  150 (250)
T PRK14245         82 LRKNVGMVFQRP---------NPFP-KSIFENVAYGLRV-NGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGG  150 (250)
T ss_pred             HhhheEEEecCC---------ccCc-ccHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHH
Confidence            356799999985         3444 4888888654210 000011112356778889888742       34567777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   ++|++++.+|+
T Consensus       151 ~~qrv~laral~~~p~  166 (250)
T PRK14245        151 QQQRLCIARAMAVSPS  166 (250)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999986

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.82  E-value=2.9e-21  Score=154.08  Aligned_cols=140  Identities=14%  Similarity=0.132  Sum_probs=97.3

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..+|++++     |++++|+|||||||||||++|+|+++|++|++.+.+ .++.. .. ....++.+
T Consensus         3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~~~-~~-~~~~~~~i   79 (490)
T PRK10938          3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQF-SHITR-LS-FEQLQKLV   79 (490)
T ss_pred             eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECC-ccccc-CC-HHHHHHHh
Confidence            4899999 9998878889888     789999999999999999999999999999998766 22211 00 01123458


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      ++++|++.....+.... ...+++.+++...          ....+++.++++.++|..   ..+..+|+ |+   +||+
T Consensus        80 ~~~~q~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~  148 (490)
T PRK10938         80 SDEWQRNNTDMLSPGED-DTGRTTAEIIQDE----------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQ  148 (490)
T ss_pred             ceeccCcchhhcccchh-hccccHHHhcccc----------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHH
Confidence            99999753211000000 0124555554321          112457888999999965   45678877 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       149 al~~~p~  155 (490)
T PRK10938        149 ALMSEPD  155 (490)
T ss_pred             HHHcCCC
Confidence            9999996

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.82  E-value=5.4e-22  Score=162.08  Aligned_cols=145  Identities=16%  Similarity=0.178  Sum_probs=103.9

Q ss_pred             EEEEeCe-eeecC-----------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh
Q psy17514          5 SMVLDGF-KSYGT-----------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK   67 (159)
Q Consensus         5 ~l~l~~~-~~~~~-----------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~   67 (159)
                      .|+++|+ +.|+.           ..++++++     |++++|+|+||||||||+++|+|+++|++|+|+++| +++...
T Consensus       313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g-~~i~~~  391 (623)
T PRK10261        313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNG-QRIDTL  391 (623)
T ss_pred             eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECC-EECCcC
Confidence            4899999 99952           46788887     789999999999999999999999999999999987 332110


Q ss_pred             hC-CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCee
Q psy17514         68 NG-QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHF  142 (159)
Q Consensus        68 ~~-~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~  142 (159)
                      .. .....++.|+|+||++..       .+++.+||.+++.++... ..........+++.++++.++|. .   .+|..
T Consensus       392 ~~~~~~~~~~~i~~v~Q~~~~-------~l~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~  463 (623)
T PRK10261        392 SPGKLQALRRDIQFIFQDPYA-------SLDPRQTVGDSIMEPLRV-HGLLPGKAAAARVAWLLERVGLLPEHAWRYPHE  463 (623)
T ss_pred             CHHHHHHhcCCeEEEecCchh-------hcCCCCCHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHcCCCHHHhhCCccc
Confidence            00 000124579999998621       366778898888754220 00001112235788999999995 2   56788


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      ||+ |+   +||++|+.+|+
T Consensus       464 LSgGqrQRv~iAraL~~~p~  483 (623)
T PRK10261        464 FSGGQRQRICIARALALNPK  483 (623)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            888 33   99999999996

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2e-21  Score=142.87  Aligned_cols=142  Identities=17%  Similarity=0.204  Sum_probs=98.1

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .-+++|+ +.|++..++.+++     |++++|+|+||||||||+++|+|+..     |++|+|.++| +++.........
T Consensus         5 ~~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~   83 (251)
T PRK14244          5 HASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG-IDVYSVDTNVVL   83 (251)
T ss_pred             EEEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECC-EehHhcccchHH
Confidence            3468899 8998878888887     78999999999999999999999986     4689999987 343211111111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCccc-------CCCeeEEe
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~  145 (159)
                      .++.++|++|++         .+++. |+.+|+.+.... ... .......+.+.++++.++|..       ..+..+|+
T Consensus        84 ~~~~i~~v~q~~---------~~~~~-tv~~ni~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  152 (251)
T PRK14244         84 LRAKVGMVFQKP---------NPFPK-SIYDNVAYGPKL-HGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG  152 (251)
T ss_pred             HhhhEEEEecCc---------ccccC-CHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCH
Confidence            356799999985         34554 788888654210 000 011112345678899999852       24566776


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   ++|++++.+|+
T Consensus       153 Gq~qrv~laral~~~p~  169 (251)
T PRK14244        153 GQQQRLCIARAIAVKPT  169 (251)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence             33   99999999986

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.82  E-value=1.5e-21  Score=134.36  Aligned_cols=143  Identities=17%  Similarity=0.291  Sum_probs=103.4

Q ss_pred             EEEEeCe-eeecCC---------eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC
Q psy17514          5 SMVLDGF-KSYGTR---------VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG   69 (159)
Q Consensus         5 ~l~l~~~-~~~~~~---------~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~   69 (159)
                      .|+++|+ |.|..+         .+++.+|     +...+|||.||||||||.++|+|+.+|++|+|.+++ ..+.+.+ 
T Consensus         4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~-~~L~~~D-   81 (267)
T COG4167           4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIND-HPLHFGD-   81 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECC-ccccccc-
Confidence            4788999 887542         3455555     578899999999999999999999999999999987 4433211 


Q ss_pred             CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccC----CCeeEEe
Q psy17514         70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVN----NPHFLIM  145 (159)
Q Consensus        70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~l~~  145 (159)
                       ...+.+.|.++||+|..       .+.|.+.+.+-+..+.+....+ ......+++.+-|..+||-++    +|..++.
T Consensus        82 -y~~R~k~IRMiFQDpnt-------s~NPRl~iGqiLd~PL~l~T~~-~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~  152 (267)
T COG4167          82 -YSFRSKRIRMIFQDPNT-------SLNPRLRIGQILDFPLRLNTDL-EPEQRRKQIFETLRMVGLLPDHANYYPHMLAP  152 (267)
T ss_pred             -hHhhhhheeeeecCCcc-------ccChhhhhhhHhcchhhhcccC-ChHHHHHHHHHHHHHhccCccccccchhhcCc
Confidence             22356789999999864       3556667766666654311111 123345788899999999763    5666666


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   ++||||..+|+
T Consensus       153 ~QKQRVaLARALIL~P~  169 (267)
T COG4167         153 GQKQRVALARALILRPK  169 (267)
T ss_pred             hhHHHHHHHHHHhcCCc
Confidence             44   99999999996

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.82  E-value=9e-22  Score=146.01  Aligned_cols=145  Identities=18%  Similarity=0.230  Sum_probs=99.9

Q ss_pred             EEEEeCe-eeec---------CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC
Q psy17514          5 SMVLDGF-KSYG---------TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG   69 (159)
Q Consensus         5 ~l~l~~~-~~~~---------~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~   69 (159)
                      .|+++|+ +.|+         ++.++.+++     +++++|+||||||||||+++|+|+..|++|+|.+++ .++.....
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g-~~~~~~~~   81 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG-EPLAKLNR   81 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EeccccCh
Confidence            4899999 9997         367888888     689999999999999999999999999999999887 33211000


Q ss_pred             C-CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEE
Q psy17514         70 Q-AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLI  144 (159)
Q Consensus        70 ~-~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~  144 (159)
                      . ....++.+++++|++..       .+++..++.+++.+.... +..........++.++++.+++..    ..+..+|
T Consensus        82 ~~~~~~~~~i~~v~q~~~~-------~~~~~~t~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS  153 (268)
T PRK10419         82 AQRKAFRRDIQMVFQDSIS-------AVNPRKTVREIIREPLRH-LLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLS  153 (268)
T ss_pred             hHHHHHHhcEEEEEcChhh-------ccCCCCCHHHHHHHHHHh-hccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCC
Confidence            0 01124679999998521       234456777766432110 100011122346888999999852    4566777


Q ss_pred             e-Ch---hHhHhhcCCCC
Q psy17514        145 M-QG---RVTKVLNMKPH  158 (159)
Q Consensus       145 ~-q~---~ia~~l~~~p~  158 (159)
                      + |+   +||++++.+|+
T Consensus       154 ~Ge~qrl~laral~~~p~  171 (268)
T PRK10419        154 GGQLQRVCLARALAVEPK  171 (268)
T ss_pred             hHHHHHHHHHHHHhcCCC
Confidence            7 33   99999999996

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.82  E-value=1.7e-21  Score=143.39  Aligned_cols=145  Identities=16%  Similarity=0.159  Sum_probs=97.9

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHH-----HHHhhCCC--
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQE-----LIYKNGQA--   71 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~-----~~~~~~~~--   71 (159)
                      .|+++|+ +.|++..++.+++     |++++|+||||||||||+++|+|+++|++|+|.+++ .+     +.......  
T Consensus         3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~   81 (253)
T TIGR02323         3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIM-RSGAELELYQLSEAERR   81 (253)
T ss_pred             eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec-ccccccccccCCHHHHH
Confidence            4899999 9998878888888     789999999999999999999999999999999877 22     21100000  


Q ss_pred             ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-C
Q psy17514         72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-Q  146 (159)
Q Consensus        72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q  146 (159)
                      ...++.+++++|++..       .+++.+++.+|+..... ............++.++++.+++..    ..+..+|+ |
T Consensus        82 ~~~~~~i~~~~q~~~~-------~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~  153 (253)
T TIGR02323        82 RLMRTEWGFVHQNPRD-------GLRMRVSAGANIGERLM-AIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGM  153 (253)
T ss_pred             HhhhcceEEEEeCccc-------ccCccccHHHHHHHHHH-HhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHH
Confidence            0113569999998521       13334455556532110 0000001122457788999999952    35566776 3


Q ss_pred             h---hHhHhhcCCCC
Q psy17514        147 G---RVTKVLNMKPH  158 (159)
Q Consensus       147 ~---~ia~~l~~~p~  158 (159)
                      +   +||++++.+|+
T Consensus       154 ~qrv~laral~~~p~  168 (253)
T TIGR02323       154 QQRLQIARNLVTRPR  168 (253)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            3   99999999986

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.82  E-value=3.3e-21  Score=136.78  Aligned_cols=129  Identities=12%  Similarity=0.118  Sum_probs=95.1

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++. ++     +++++|+|+||||||||+++|+|+.+|++|++.+++ .++.. .     ..+.++
T Consensus         2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~i~~-~-----~~~~~~   73 (195)
T PRK13541          2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKN-CNINN-I-----AKPYCT   73 (195)
T ss_pred             eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-cccCh-h-----hhhhEE
Confidence            789999 9997765544 76     789999999999999999999999999999999987 33211 0     123578


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      +++|.+         .+++..|+.+|+.+...  ..  +   ..+++.++++.+++..   ..+..+|+ |+   ++|++
T Consensus        74 ~~~~~~---------~~~~~~tv~~~l~~~~~--~~--~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~a  137 (195)
T PRK13541         74 YIGHNL---------GLKLEMTVFENLKFWSE--IY--N---SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARL  137 (195)
T ss_pred             eccCCc---------CCCccCCHHHHHHHHHH--hc--c---cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHH
Confidence            888764         24456788888866421  11  1   2356778889998864   34566776 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       138 l~~~p~  143 (195)
T PRK13541        138 IACQSD  143 (195)
T ss_pred             HhcCCC
Confidence            999986

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2.2e-21  Score=143.41  Aligned_cols=144  Identities=15%  Similarity=0.147  Sum_probs=99.9

Q ss_pred             EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc-----ccchhhhhHHHHHHhhCCC
Q psy17514          3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ-----VKQVRANTLQELIYKNGQA   71 (159)
Q Consensus         3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~-----~g~i~~~~~~~~~~~~~~~   71 (159)
                      +..|+++|+ +.|++..+|.+++     +++++|+|+||||||||+++|+|+++|+     .|++.++| .++.......
T Consensus         5 ~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g-~~i~~~~~~~   83 (261)
T PRK14258          5 IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN-QNIYERRVNL   83 (261)
T ss_pred             cceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC-EEhhccccch
Confidence            457999999 9998877888887     7899999999999999999999999985     67777776 3321101111


Q ss_pred             ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEE
Q psy17514         72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLI  144 (159)
Q Consensus        72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~  144 (159)
                      ...+..+++++|++         .+++ .|+.+|+.+... ...........+.+.++++.+++.       ...+..+|
T Consensus        84 ~~~~~~i~~~~q~~---------~l~~-~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  152 (261)
T PRK14258         84 NRLRRQVSMVHPKP---------NLFP-MSVYDNVAYGVK-IVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLS  152 (261)
T ss_pred             HHhhccEEEEecCC---------ccCc-ccHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence            12356799999985         3555 688888865421 000001111234567888888873       13456777


Q ss_pred             e-Ch---hHhHhhcCCCC
Q psy17514        145 M-QG---RVTKVLNMKPH  158 (159)
Q Consensus       145 ~-q~---~ia~~l~~~p~  158 (159)
                      + |.   ++|++++.+|+
T Consensus       153 gGq~qrv~laral~~~p~  170 (261)
T PRK14258        153 GGQQQRLCIARALAVKPK  170 (261)
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            7 33   99999999986

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.81  E-value=2.7e-21  Score=158.01  Aligned_cols=146  Identities=15%  Similarity=0.187  Sum_probs=103.1

Q ss_pred             EEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHH------HHHHhh
Q psy17514          5 SMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ------ELIYKN   68 (159)
Q Consensus         5 ~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~------~~~~~~   68 (159)
                      .|+++|+ +.|+.    ..++++++     |++++|+||||||||||+++|+|+++|++|.|.+++..      ++....
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~   91 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS   91 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence            4899999 99963    46888887     79999999999999999999999999999998776520      000000


Q ss_pred             C-C----CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc------c
Q psy17514         69 G-Q----AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN------V  137 (159)
Q Consensus        69 ~-~----~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~  137 (159)
                      . .    ....++.|+++||++..       .+++.+||.+|+.++....... ......+++.++++.++|.      .
T Consensus        92 ~~~~~~~~~~r~~~ig~v~Q~~~~-------~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~  163 (623)
T PRK10261         92 EQSAAQMRHVRGADMAMIFQEPMT-------SLNPVFTVGEQIAESIRLHQGA-SREEAMVEAKRMLDQVRIPEAQTILS  163 (623)
T ss_pred             cCCHHHHHHHhCCCEEEEEeCchh-------hcCCCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHCCCCChhhHHh
Confidence            0 0    00112479999998621       3566789999987753210000 1222346788999999994      2


Q ss_pred             CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        138 NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       138 ~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      .++.+||+ |+   +||++|+.+|+
T Consensus       164 ~~~~~LSgGq~QRv~iA~AL~~~P~  188 (623)
T PRK10261        164 RYPHQLSGGMRQRVMIAMALSCRPA  188 (623)
T ss_pred             CCCccCCHHHHHHHHHHHHHhCCCC
Confidence            56788888 33   99999999996

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=1.8e-21  Score=143.59  Aligned_cols=142  Identities=18%  Similarity=0.239  Sum_probs=101.3

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhH-----HHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTL-----QELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~-----~~~~~~~~~~~~   73 (159)
                      .|.++|+ ++|+++.++.+++     +++++|+||||||||||+++|+|+..|++|++.++|.     .++...  ....
T Consensus        10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~--~~~~   87 (257)
T PRK14246         10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI--DAIK   87 (257)
T ss_pred             heeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC--CHHH
Confidence            4899999 9999989999988     6899999999999999999999999999877765541     111100  0011


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-  145 (159)
                      .+..+++++|++         .+++.+|+.+|+.++... ..........+++.++++.+++..       ..+..+|+ 
T Consensus        88 ~~~~i~~~~q~~---------~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G  157 (257)
T PRK14246         88 LRKEVGMVFQQP---------NPFPHLSIYDNIAYPLKS-HGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG  157 (257)
T ss_pred             HhcceEEEccCC---------ccCCCCcHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence            356799999985         366777999998765210 000111122356788889998851       45566776 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +|||+++.+|+
T Consensus       158 ~~qrl~laral~~~P~  173 (257)
T PRK14246        158 QQQRLTIARALALKPK  173 (257)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            33   99999999996

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.81  E-value=2.3e-21  Score=144.16  Aligned_cols=142  Identities=18%  Similarity=0.215  Sum_probs=99.5

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++.+++     |++++|+||||||||||+++|+|++.+     ++|++.++| .++.........
T Consensus        25 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g-~~i~~~~~~~~~  103 (272)
T PRK14236         25 ALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG-QNIYDKKVDVAE  103 (272)
T ss_pred             EEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC-EECcccccCHHH
Confidence            5899999 9998778888887     789999999999999999999999873     799999887 332110001112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-  145 (159)
                      .++.+++++|++         .+++. |+.+|+.+... ...........+++.++++.+++..       ..+..+|+ 
T Consensus       104 ~~~~i~~v~q~~---------~l~~~-tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  172 (272)
T PRK14236        104 LRRRVGMVFQRP---------NPFPK-SIYENVVYGLR-LQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGG  172 (272)
T ss_pred             HhccEEEEecCC---------ccCcc-cHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHH
Confidence            356899999985         35554 88888865421 0100011112345777888888742       34567777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +|||+++.+|+
T Consensus       173 q~qrv~laral~~~p~  188 (272)
T PRK14236        173 QQQRLVIARAIAIEPE  188 (272)
T ss_pred             HHHHHHHHHHHHCCCC
Confidence            33   99999999986

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=3.2e-21  Score=145.47  Aligned_cols=143  Identities=16%  Similarity=0.174  Sum_probs=99.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..+|.+++     |++++|+|+|||||||||++|+|++.     |++|+|+++| .++.........
T Consensus        45 ~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g-~~i~~~~~~~~~  123 (305)
T PRK14264         45 KLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG-QDIYQDGVNLVE  123 (305)
T ss_pred             eEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC-EEcccccccHHH
Confidence            4889999 9998888888887     78999999999999999999999985     5899999887 332110100111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE----------EECCE-EeCHHHHHHHHHhcCcc------
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY----------MINGS-SVNPKRVSDLFSSVNLN------  136 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~----------~~~~~-~~~~~~~~~~l~~~~l~------  136 (159)
                      .+..++|++|++         .+++ .|+.+|+.++.....          ..... ....+++.++++.+++.      
T Consensus       124 ~~~~i~~v~q~~---------~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  193 (305)
T PRK14264        124 LRKRVGMVFQSP---------NPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR  193 (305)
T ss_pred             HhhceEEEccCC---------cccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence            346799999985         3455 388888876421100          00011 11234677888888873      


Q ss_pred             -cCCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        137 -VNNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       137 -~~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                       ...+..+|+ |+   +||++|+.+|+
T Consensus       194 ~~~~~~~LSgGq~qrv~LAraL~~~p~  220 (305)
T PRK14264        194 LDDNALGLSGGQQQRLCIARCLAVDPE  220 (305)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhcCCC
Confidence             145677777 33   99999999986

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.81  E-value=4.6e-21  Score=157.07  Aligned_cols=133  Identities=17%  Similarity=0.158  Sum_probs=102.0

Q ss_pred             EEEEeCe-eeecCC--eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGTR--VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~~--~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .++++|+ .+|+..  .+|.++|     |+.++|+|+||||||||++.|.|++.|..|+|+++| .|+...+.  ...|+
T Consensus       471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg-~dl~~i~~--~~lR~  547 (709)
T COG2274         471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG-VDLNDIDL--ASLRR  547 (709)
T ss_pred             eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EeHHhcCH--HHHHh
Confidence            5899999 999765  5788887     789999999999999999999999999999999998 44432221  22578


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++|.|++         .+| +-|++||+.++.        .....+++.+++...+...              +.-..
T Consensus       548 ~ig~V~Q~~---------~Lf-~gSI~eNi~l~~--------p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~  609 (709)
T COG2274         548 QVGYVLQDP---------FLF-SGSIRENIALGN--------PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN  609 (709)
T ss_pred             heeEEcccc---------hhh-cCcHHHHHhcCC--------CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCC
Confidence            999999996         233 348999998863        2234467777776666543              23456


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   +|||++..+|+
T Consensus       610 LSGGQrQrlalARaLl~~P~  629 (709)
T COG2274         610 LSGGQRQRLALARALLSKPK  629 (709)
T ss_pred             CCHHHHHHHHHHHHhccCCC
Confidence            777 54   99999999996

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.81  E-value=2e-21  Score=144.32  Aligned_cols=142  Identities=15%  Similarity=0.200  Sum_probs=96.8

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++.+++     |++++|+|+||||||||+++|+|++.     |++|+|.++| .++.........
T Consensus        24 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~  102 (271)
T PRK14238         24 VFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD-QNIFDKSYSVEE  102 (271)
T ss_pred             EEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC-EEcccccccHHH
Confidence            4899999 9998877888887     78999999999999999999999987     5899999887 332110000111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc----cc---CCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL----NV---NNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~---~~~~~l~~-  145 (159)
                      .++.++|++|++         .+++ .|+.+|+.++... ............+.++++.+++    ..   ..+..+|+ 
T Consensus       103 ~~~~i~~v~q~~---------~~~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgG  171 (271)
T PRK14238        103 LRTNVGMVFQKP---------NPFP-KSIYDNVTYGPKI-HGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGG  171 (271)
T ss_pred             HhhhEEEEecCC---------cccc-ccHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHH
Confidence            356799999985         3454 4888988764210 1111111112345666666643    21   45667777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +||++|+.+|+
T Consensus       172 e~qrv~laraL~~~p~  187 (271)
T PRK14238        172 QQQRLCIARCLAIEPD  187 (271)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            33   99999999986

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=2.5e-21  Score=144.18  Aligned_cols=141  Identities=13%  Similarity=0.147  Sum_probs=99.1

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|+++.++.+++     +++++|+||||||||||+++|+|+++|     ++|+|.+++ .++... .....
T Consensus        21 ~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g-~~i~~~-~~~~~   98 (276)
T PRK14271         21 AMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG-RSIFNY-RDVLE   98 (276)
T ss_pred             EEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC-EEcccc-chhHH
Confidence            4899999 9999888888888     689999999999999999999999985     689999887 222110 00111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-  145 (159)
                      .+..++|++|++         .+++ .|+.+|+.++... ..........+.+.++++.+++..       ..+..+|+ 
T Consensus        99 ~~~~i~~v~q~~---------~l~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgG  167 (276)
T PRK14271         99 FRRRVGMLFQRP---------NPFP-MSIMDNVLAGVRA-HKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGG  167 (276)
T ss_pred             HhhheEEeccCC---------ccCC-ccHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHH
Confidence            356799999985         3455 6888888764210 000011111234567788888852       34567777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |.   +|||+++.+|+
T Consensus       168 q~qrl~LAral~~~p~  183 (276)
T PRK14271        168 QQQLLCLARTLAVNPE  183 (276)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999985

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.81  E-value=3.8e-21  Score=138.74  Aligned_cols=133  Identities=14%  Similarity=0.097  Sum_probs=95.5

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ +.|++  ..++.+++     +++++|+||||||||||+++|+|+.+|++|++.+++ .++.. .. ....++
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~-~~-~~~~~~   78 (220)
T cd03245           2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDG-TDIRQ-LD-PADLRR   78 (220)
T ss_pred             eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECC-EEhHH-CC-HHHHHh
Confidence            3789999 89975  45788877     789999999999999999999999999999999887 33211 01 011245


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CC-----------Cee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NN-----------PHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~-----------~~~  142 (159)
                      .+++++|++         .+++ .|+.+|+.+...  .      ...+.+.++++.+++..   ..           +..
T Consensus        79 ~i~~~~q~~---------~~~~-~tv~e~l~~~~~--~------~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~  140 (220)
T cd03245          79 NIGYVPQDV---------TLFY-GTLRDNITLGAP--L------ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRG  140 (220)
T ss_pred             hEEEeCCCC---------cccc-chHHHHhhcCCC--C------CCHHHHHHHHHHcCcHHHHHhccccccceecCCCcc
Confidence            799999985         2444 488888766421  0      12345667788777754   22           246


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   +||++++.+|+
T Consensus       141 LSgG~~qrl~la~al~~~p~  160 (220)
T cd03245         141 LSGGQRQAVALARALLNDPP  160 (220)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            776 33   99999999986

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.81  E-value=2e-21  Score=172.06  Aligned_cols=139  Identities=12%  Similarity=0.143  Sum_probs=106.9

Q ss_pred             EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ +.|+  ++.++++++     |++++|+||||||||||+++|+|++.|++|++++.| .++.. .  ....++
T Consensus       928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G-~dI~~-~--~~~~r~ 1003 (2272)
T TIGR01257       928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGG-KDIET-N--LDAVRQ 1003 (2272)
T ss_pred             eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECC-EECcc-h--HHHHhh
Confidence            5899999 9995  567889888     799999999999999999999999999999999887 33311 0  111356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      .+++++|++         .+++.+||.+++.+..+  .+........+++.++++.++|..   ..+..||+ |+   +|
T Consensus      1004 ~IG~~pQ~~---------~L~~~LTV~E~L~f~~~--lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257      1004 SLGMCPQHN---------ILFHHLTVAEHILFYAQ--LKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred             cEEEEecCC---------cCCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence            799999985         47788999999987532  111111223457889999999975   45678888 43   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |+|++.+|+
T Consensus      1073 ArALi~~Pk 1081 (2272)
T TIGR01257      1073 AIAFVGDAK 1081 (2272)
T ss_pred             HHHHHcCCC
Confidence            999999986

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.81  E-value=1.6e-21  Score=140.26  Aligned_cols=133  Identities=17%  Similarity=0.176  Sum_probs=95.4

Q ss_pred             Ce-eeecCCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCceeEEEEEEEE
Q psy17514         10 GF-KSYGTRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAGVTKASVTLTF   82 (159)
Q Consensus        10 ~~-~~~~~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~i~~v~   82 (159)
                      |+ ++|+++.+  +++    .++++|+||||||||||+++|+|+++|++|++.++| .++.....  .....++.+++++
T Consensus         5 ~l~~~~~~~~~--~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~~i~~~~   81 (214)
T cd03297           5 DIEKRLPDFTL--KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNG-TVLFDSRKKINLPPQQRKIGLVF   81 (214)
T ss_pred             eeeEecCCeee--CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EecccccchhhhhhHhhcEEEEe
Confidence            88 89988754  665    378999999999999999999999999999999887 33211000  0011245799999


Q ss_pred             EcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcC
Q psy17514         83 DNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNM  155 (159)
Q Consensus        83 q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~  155 (159)
                      |++         .+++.+|+.+|+.+...  ..  ......+++.++++.+++..   ..+..+|+ |+   +||++++.
T Consensus        82 q~~---------~~~~~~t~~~~l~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~  148 (214)
T cd03297          82 QQY---------ALFPHLNVRENLAFGLK--RK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA  148 (214)
T ss_pred             cCC---------ccCCCCCHHHHHHHHHh--hC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence            985         46667789998876422  10  11122356788999999965   45677777 33   99999999


Q ss_pred             CCC
Q psy17514        156 KPH  158 (159)
Q Consensus       156 ~p~  158 (159)
                      +|+
T Consensus       149 ~p~  151 (214)
T cd03297         149 QPE  151 (214)
T ss_pred             CCC
Confidence            996

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0996|consensus

Probab=99.81  E-value=2.3e-19  Score=148.70  Aligned_cols=156  Identities=33%  Similarity=0.567  Sum_probs=126.5

Q ss_pred             eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCc-eeEEEEEE
Q psy17514          2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAG-VTKASVTL   80 (159)
Q Consensus         2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~~~i~~   80 (159)
                      ++..|.++|||+|.+.+++-+|...+++||||||||||+++++|.+..+-.++.||-..+.++|+...... ...+.|.+
T Consensus        85 ~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~kiR~~klS~LIh~S~~~~~l~SCsV~v  164 (1293)
T KOG0996|consen   85 MITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKIRSKKLSALIHKSDGHPNLQSCSVEV  164 (1293)
T ss_pred             eehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHHhHHHHHHHHhccCCCCCCcceeEEE
Confidence            46678999999999999999999999999999999999999999999999999999988778887443333 23578888


Q ss_pred             EEEcCCCCCCCCCccCC--CeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCCC
Q psy17514         81 TFDNSDKKNCPIGYEND--NTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPH  158 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p~  158 (159)
                      -||.--+..... +...  ..++|.+......++.|+++++....+.|..+|...|++.++.-+|..||.|..++.|+|+
T Consensus       165 hFq~iiD~~~~~-~E~vp~s~~~ItRtA~~~NsSkY~Ingk~as~~~V~~lLk~~gIDleHNRFLILQGEVE~IA~MKPk  243 (1293)
T KOG0996|consen  165 HFQKIIDKPGGT-YEVVPDSEFTITRTAFRDNSSKYYINGKEASFKDVTKLLKSHGIDLEHNRFLILQGEVEQIAMMKPK  243 (1293)
T ss_pred             eeeeeeccCCCc-eeecCCCeeEEEehhhhCCCceEeECCccccHHHHHHHHHhcCCCCccceeeeehhhHHHHHhcCCC
Confidence            888532110000 1122  2467877777667778999999999999999999999999888889999999999999995

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.81  E-value=4.8e-21  Score=134.14  Aligned_cols=93  Identities=19%  Similarity=0.307  Sum_probs=70.1

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++++++     +++++|+||||||||||+++|+|+++|++|++.+++ .++....+.....++.++
T Consensus         1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~i~   79 (178)
T cd03229           1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG-EDLTDLEDELPPLRRRIG   79 (178)
T ss_pred             CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccccchhHHHHhhcEE
Confidence            468899 8898878888887     689999999999999999999999999999999887 332110000112356799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEc
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISI  108 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~  108 (159)
                      +++|++         .+++..|+.+|+.+
T Consensus        80 ~~~q~~---------~~~~~~t~~~~l~~   99 (178)
T cd03229          80 MVFQDF---------ALFPHLTVLENIAL   99 (178)
T ss_pred             EEecCC---------ccCCCCCHHHheee
Confidence            999985         35556677777654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.81  E-value=4.1e-21  Score=151.39  Aligned_cols=148  Identities=19%  Similarity=0.227  Sum_probs=110.0

Q ss_pred             eEEEEEEeCe-eeecCC----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc----ccchhhhhHHHHHHh
Q psy17514          2 YIKSMVLDGF-KSYGTR----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ----VKQVRANTLQELIYK   67 (159)
Q Consensus         2 ~~~~l~l~~~-~~~~~~----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~----~g~i~~~~~~~~~~~   67 (159)
                      +...|+++|+ ..|...    .+++++|     ||+++|+|+|||||||+..+|.|++++.    .|+|.++| +++...
T Consensus         2 ~~~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g-~dl~~l   80 (539)
T COG1123           2 MSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG-RDLLGL   80 (539)
T ss_pred             CCceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECC-cchhcC
Confidence            3346999999 888643    5788888     7999999999999999999999999877    79999988 455332


Q ss_pred             hC--CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---C--CC
Q psy17514         68 NG--QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---N--NP  140 (159)
Q Consensus        68 ~~--~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~--~~  140 (159)
                      ..  ....+.+.|+++||+|..       .+.|-+|+.++|.-........ ...+..+++.++|+.++|.+   .  +|
T Consensus        81 ~~~~~r~~rg~~Ia~i~Q~p~~-------slnP~~tIg~Qi~E~~~~h~~~-~~~ea~~~a~elL~~Vgl~~~~~~~~yP  152 (539)
T COG1123          81 SEREMRKLRGKRIAMIFQDPMT-------SLNPVMTIGDQIREALRLHGKG-SRAEARKRAVELLEQVGLPDPERRDRYP  152 (539)
T ss_pred             CHHHHHHhccccEEEEecCchh-------hcCchhhHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHcCCCChhhhccCC
Confidence            21  122346789999999853       3455567777665432211111 13445678899999999976   4  89


Q ss_pred             eeEEe---Ch-hHhHhhcCCCC
Q psy17514        141 HFLIM---QG-RVTKVLNMKPH  158 (159)
Q Consensus       141 ~~l~~---q~-~ia~~l~~~p~  158 (159)
                      .+||+   |+ .||++|+.+|+
T Consensus       153 heLSGG~rQRv~iAmALa~~P~  174 (539)
T COG1123         153 HQLSGGMRQRVMIAMALALKPK  174 (539)
T ss_pred             cccCchHHHHHHHHHHHhCCCC
Confidence            99999   44 99999999996

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=5.9e-21  Score=142.05  Aligned_cols=140  Identities=16%  Similarity=0.173  Sum_probs=97.3

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..+|.+++     +++++|+||||||||||+++|+|++.+     ++|+|.++| .++.........
T Consensus        20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~l~~~~~~~~~   98 (274)
T PRK14265         20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD-RNIYDSQINSVK   98 (274)
T ss_pred             eEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC-EecccccchhHH
Confidence            5899999 9998878888888     789999999999999999999999863     589999887 333110000111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .+..|+++||++         .+++. ++.+|+.++..  .... .....+.+.++++.+++.       ...+..+|+ 
T Consensus        99 ~~~~i~~v~q~~---------~l~~~-tv~~nl~~~~~--~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG  165 (274)
T PRK14265         99 LRRQVGMVFQRP---------NPFPK-SIYENIAFAPR--ANGY-KGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGG  165 (274)
T ss_pred             HhhcEEEEccCC---------ccccc-cHHHHHHhHHH--hcCc-hHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHH
Confidence            356799999985         34543 88888876422  1100 111234456677777763       145567776 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   ++|++++.+|+
T Consensus       166 q~qrv~LAraL~~~p~  181 (274)
T PRK14265        166 QQQRLCIARAIAMKPD  181 (274)
T ss_pred             HHHHHHHHHHHhhCCC
Confidence            33   99999999986

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.80  E-value=9.9e-21  Score=136.66  Aligned_cols=132  Identities=13%  Similarity=0.149  Sum_probs=94.4

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ +.|+.  +.++++++     +++++|+||||||||||+++|+|+..|++|++.+++ .++... . ....++
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~-~-~~~~~~   78 (221)
T cd03244           2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDG-VDISKI-G-LHDLRS   78 (221)
T ss_pred             cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECC-EEhHhC-C-HHHHhh
Confidence            4789999 99964  36888887     689999999999999999999999999999999887 333211 1 111356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .+++++|++         .+++ .|+.+|+.+...         ...+++.+.++.+++..              ..+..
T Consensus        79 ~i~~~~q~~---------~l~~-~tv~enl~~~~~---------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~  139 (221)
T cd03244          79 RISIIPQDP---------VLFS-GTIRSNLDPFGE---------YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGEN  139 (221)
T ss_pred             hEEEECCCC---------cccc-chHHHHhCcCCC---------CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCc
Confidence            799999985         2444 488888764311         12345566666665532              24566


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |.   ++|++++.+|+
T Consensus       140 LS~G~~qr~~laral~~~p~  159 (221)
T cd03244         140 LSVGQRQLLCLARALLRKSK  159 (221)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            766 33   99999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=4.2e-21  Score=141.21  Aligned_cols=142  Identities=18%  Similarity=0.182  Sum_probs=96.8

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC--C---cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG--I---QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~--~---~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ +.|++..++.+++     +++++|+|+||||||||+++|+|+..  |   ++|+|.++| .++.........
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~   83 (252)
T PRK14255          5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG-QNIYAPNEDVVQ   83 (252)
T ss_pred             eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC-EEcccccccHHH
Confidence            4899999 9998878899887     68999999999999999999999875  4   489999887 332110000111


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~-  145 (159)
                      .++.+++++|++         .+++ .|+.+|+.+.... ..........+++.+.++.+++.       ...+..+|+ 
T Consensus        84 ~~~~i~~~~q~~---------~~~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G  152 (252)
T PRK14255         84 LRKQVGMVFQQP---------NPFP-FSIYENVIYGLRL-AGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGG  152 (252)
T ss_pred             hcCeEEEEECCC---------ccCC-CcHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHH
Confidence            346799999985         3455 5888888754210 00001111123456677777652       135667777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +||++++.+|+
T Consensus       153 q~qrv~laral~~~p~  168 (252)
T PRK14255        153 QQQRVCIARVLAVKPD  168 (252)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            33   99999999986

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.80  E-value=6.7e-21  Score=157.38  Aligned_cols=132  Identities=19%  Similarity=0.167  Sum_probs=101.2

Q ss_pred             EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .++++|+ .+|+  +..+|+++|     |+.++|+|+||||||||+++|+|++.|++|+|.++| .++...+.  ...++
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg-~~i~~~~~--~~lr~  527 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDG-QDLAGLDV--QAVRR  527 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC-EEcCcCCH--HHHHh
Confidence            5899999 9995  356888888     799999999999999999999999999999999998 34321111  12467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++++|++         .+|+ -|+++|+.++.        . .+.+++.++++.+++..              +.-..
T Consensus       528 ~i~~v~Q~~---------~lf~-gTI~eNi~~~~--------~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~  588 (686)
T TIGR03797       528 QLGVVLQNG---------RLMS-GSIFENIAGGA--------P-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGT  588 (686)
T ss_pred             ccEEEccCC---------ccCc-ccHHHHHhcCC--------C-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC
Confidence            899999996         3554 39999998752        1 34567788888877753              12245


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++||++..+|+
T Consensus       589 LSGGQrQRialARAll~~p~  608 (686)
T TIGR03797       589 LSGGQRQRLLIARALVRKPR  608 (686)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            666 43   99999999996

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.80  E-value=3.3e-21  Score=155.04  Aligned_cols=146  Identities=17%  Similarity=0.232  Sum_probs=100.4

Q ss_pred             EEEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhh
Q psy17514          4 KSMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKN   68 (159)
Q Consensus         4 ~~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~   68 (159)
                      ..|+++|+ +.|++    ..++++++     |++++|+||||||||||+++|+|+++|     ++|+|.++| .++....
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g-~~i~~~~   82 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG-ESLLHAS   82 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC-EecccCC
Confidence            35899999 99963    46888888     789999999999999999999999986     689998887 3321100


Q ss_pred             CC--CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc------CCC
Q psy17514         69 GQ--AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV------NNP  140 (159)
Q Consensus        69 ~~--~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~  140 (159)
                      ..  ....++.++++||++..       .+++.+++.+++.+........ ......+++.++++.++|..      ..+
T Consensus        83 ~~~~~~~~~~~ig~v~Q~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~  154 (529)
T PRK15134         83 EQTLRGVRGNKIAMIFQEPMV-------SLNPLHTLEKQLYEVLSLHRGM-RREAARGEILNCLDRVGIRQAAKRLTDYP  154 (529)
T ss_pred             HHHHHHHhcCceEEEecCchh-------hcCchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence            00  00123579999998521       1344557777665321100000 11223467889999999953      457


Q ss_pred             eeEEe-Ch---hHhHhhcCCCC
Q psy17514        141 HFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       141 ~~l~~-q~---~ia~~l~~~p~  158 (159)
                      .+||+ |+   +||++|+.+|+
T Consensus       155 ~~LSgGe~qrv~iAraL~~~p~  176 (529)
T PRK15134        155 HQLSGGERQRVMIAMALLTRPE  176 (529)
T ss_pred             cccCHHHHHHHHHHHHHhcCCC
Confidence            78888 33   99999999996

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.80  E-value=4.6e-20  Score=131.73  Aligned_cols=118  Identities=16%  Similarity=0.191  Sum_probs=86.6

Q ss_pred             EEEeCe-eeecCC-----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514          6 MVLDGF-KSYGTR-----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         6 l~l~~~-~~~~~~-----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      |+++|+ +.|++.     .++++++     +++++|+||||||||||+++|+|+.+|++|+|.++|              
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--------------   66 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------------   66 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence            468899 899764     6888887     789999999999999999999999999999998765              


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc-----------cc---CCC
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL-----------NV---NNP  140 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~---~~~  140 (159)
                        .|+|++|++         .++ ..|+.+|+.++..  +  +     .+...+.++.+++           ..   ..+
T Consensus        67 --~i~~~~q~~---------~l~-~~t~~enl~~~~~--~--~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  125 (204)
T cd03250          67 --SIAYVSQEP---------WIQ-NGTIRENILFGKP--F--D-----EERYEKVIKACALEPDLEILPDGDLTEIGEKG  125 (204)
T ss_pred             --EEEEEecCc---------hhc-cCcHHHHhccCCC--c--C-----HHHHHHHHHHcCcHHHHHhccCcccceecCCC
Confidence              589999986         244 3589999887532  1  1     1223333333322           11   234


Q ss_pred             eeEEe-Ch---hHhHhhcCCCC
Q psy17514        141 HFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       141 ~~l~~-q~---~ia~~l~~~p~  158 (159)
                      ..+|+ |+   ++||+++.+|+
T Consensus       126 ~~lS~G~~qrv~laral~~~p~  147 (204)
T cd03250         126 INLSGGQKQRISLARAVYSDAD  147 (204)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCC
Confidence            56666 33   99999999996

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.80  E-value=1e-20  Score=156.80  Aligned_cols=133  Identities=14%  Similarity=0.075  Sum_probs=101.2

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ .+|++  +.+|+++|     |+.++|+||||||||||+++|+|+++|++|+|.++| .++...+.  ...++
T Consensus       477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg-~~i~~~~~--~~lr~  553 (710)
T TIGR03796       477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDG-IPREEIPR--EVLAN  553 (710)
T ss_pred             eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EeHHHCCH--HHHHh
Confidence            5899999 99974  56888888     789999999999999999999999999999999998 44432111  12478


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++++|++         .+|+ -|+++|+.++.        .....+++.++++..++..              +....
T Consensus       554 ~i~~v~Q~~---------~lf~-gTi~eNi~l~~--------~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~  615 (710)
T TIGR03796       554 SVAMVDQDI---------FLFE-GTVRDNLTLWD--------PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN  615 (710)
T ss_pred             heeEEecCC---------hhhh-ccHHHHhhCCC--------CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCC
Confidence            899999996         3444 49999998752        1234567777777766643              23345


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++||++..+|+
T Consensus       616 LSGGQrQRiaLARall~~p~  635 (710)
T TIGR03796       616 LSGGQRQRLEIARALVRNPS  635 (710)
T ss_pred             CCHHHHHHHHHHHHHhhCCC
Confidence            666 43   99999999986

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.80  E-value=7.2e-21  Score=137.85  Aligned_cols=140  Identities=15%  Similarity=0.149  Sum_probs=96.1

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ +.|++   ..++.+++     +++++|+||||||||||+++|+|+++|++|++.++| .++....  ....+
T Consensus        11 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~~~--~~~~~   87 (226)
T cd03248          11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDG-KPISQYE--HKYLH   87 (226)
T ss_pred             eEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECC-CchHHcC--HHHHH
Confidence            5899999 99964   35788887     789999999999999999999999999999999887 3332111  11234


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC--EEeCHHHHHHHHHhc--Cccc---CCCeeEEe-Ch
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING--SSVNPKRVSDLFSSV--NLNV---NNPHFLIM-QG  147 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~--~l~~---~~~~~l~~-q~  147 (159)
                      +.+++++|++         .+++ .|+.+|+.++... .....  .......+.++++.+  ++..   ..+..+|+ |.
T Consensus        88 ~~i~~~~q~~---------~l~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~  156 (226)
T cd03248          88 SKVSLVGQEP---------VLFA-RSLQDNIAYGLQS-CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQK  156 (226)
T ss_pred             hhEEEEeccc---------HHHh-hhHHHHhccccCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHH
Confidence            6799999985         3444 4888888764220 00000  000011235667777  6654   45677777 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         +||++++.+|+
T Consensus       157 qrv~laral~~~p~  170 (226)
T cd03248         157 QRVAIARALIRNPQ  170 (226)
T ss_pred             HHHHHHHHHhcCCC
Confidence               99999999986

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.80  E-value=7.1e-21  Score=138.10  Aligned_cols=133  Identities=14%  Similarity=0.192  Sum_probs=92.1

Q ss_pred             EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ +.|++ ..++++++     |++++|+|||||||||||++|+|+++|++|+|.+++ .++....  ....+..
T Consensus         2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~--~~~~~~~   78 (229)
T cd03254           2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDG-IDIRDIS--RKSLRSM   78 (229)
T ss_pred             eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC-EeHHHcC--HHHHhhh
Confidence            4789999 99974 46788887     689999999999999999999999999999999887 3332111  1113456


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc-----------cc---CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL-----------NV---NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~---~~~~~l  143 (159)
                      ++|++|++         .+++. |+.+|+.+...        .....++.++++.+++           ..   ..+..+
T Consensus        79 i~~~~q~~---------~~~~~-tv~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L  140 (229)
T cd03254          79 IGVVLQDT---------FLFSG-TIMENIRLGRP--------NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNL  140 (229)
T ss_pred             EEEecCCc---------hhhhh-HHHHHHhccCC--------CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcC
Confidence            99999985         34444 88888766421        0112334444444333           21   234667


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   ++|++++.+|+
T Consensus       141 S~G~~~rv~la~al~~~p~  159 (229)
T cd03254         141 SQGERQLLAIARAMLRDPK  159 (229)
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            76 33   99999999996

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0057|consensus

Probab=99.80  E-value=3.7e-20  Score=144.67  Aligned_cols=132  Identities=20%  Similarity=0.193  Sum_probs=105.2

Q ss_pred             EEEEeCe-eeecCCe-eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGTRV-EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~-~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ ..|++++ +|+++|     |+-++|+|+|||||||+|++|-.+.. .+|+|+++| +++.....  ...|+.
T Consensus       351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG-~dik~~~~--~SlR~~  426 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDG-QDIKEVSL--ESLRQS  426 (591)
T ss_pred             cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECC-eeHhhhCh--HHhhhh
Confidence            4899999 9998776 999998     67899999999999999999999999 899999999 56543222  225788


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l  143 (159)
                      |++|+|+.         .+|.+ ||..||.++.        .....+++.+.++.+++.+              +.-..+
T Consensus       427 Ig~VPQd~---------~LFnd-TIl~NI~YGn--------~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~L  488 (591)
T KOG0057|consen  427 IGVVPQDS---------VLFND-TILYNIKYGN--------PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLML  488 (591)
T ss_pred             eeEeCCcc---------cccch-hHHHHhhcCC--------CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccccc
Confidence            99999985         45554 8999998873        3456688999999999865              123456


Q ss_pred             Ee---Ch-hHhHhhcCCCC
Q psy17514        144 IM---QG-RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~---q~-~ia~~l~~~p~  158 (159)
                      |+   |+ +++|++..+|+
T Consensus       489 SGGekQrvslaRa~lKda~  507 (591)
T KOG0057|consen  489 SGGEKQRVSLARAFLKDAP  507 (591)
T ss_pred             ccchHHHHHHHHHHhcCCC
Confidence            66   33 99999999986

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.3e-20  Score=139.33  Aligned_cols=140  Identities=16%  Similarity=0.137  Sum_probs=99.5

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .+.+++. +.|++..++++++     +++++|+|+||||||||+++|+|++.|     ++|+|.++| .++.........
T Consensus         8 ~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g-~~i~~~~~~~~~   86 (261)
T PRK14263          8 VMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLG-QDVYGKGVDPVV   86 (261)
T ss_pred             eEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECC-EeccccccchHh
Confidence            4678888 7888878888887     789999999999999999999999976     689999988 343210111112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-  145 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-  145 (159)
                      .++.+++++|++         .++ .+|+.+|+.++..  +.. .......++.++++.+++..       ..+..+|+ 
T Consensus        87 ~~~~i~~v~q~~---------~~~-~~tv~enl~~~~~--~~~-~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G  153 (261)
T PRK14263         87 VRRYIGMVFQQP---------NPF-SMSIFDNVAFGLR--LNR-YKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGG  153 (261)
T ss_pred             hhhceEEEecCC---------ccc-cccHHHHHHHHHh--hcC-chHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence            356799999985         244 4788899876532  111 11122356788899998843       23456666 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |.   ++||+++.+|+
T Consensus       154 ~~qrv~laral~~~p~  169 (261)
T PRK14263        154 QQQRLCIARAIATEPE  169 (261)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            32   99999999986

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.80  E-value=4.2e-21  Score=154.43  Aligned_cols=145  Identities=14%  Similarity=0.186  Sum_probs=101.9

Q ss_pred             EEEEeCe-eeec-----------CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh
Q psy17514          5 SMVLDGF-KSYG-----------TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK   67 (159)
Q Consensus         5 ~l~l~~~-~~~~-----------~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~   67 (159)
                      .|+++|+ +.|+           ++.+|+++|     |++++|+||||||||||+++|+|+++ ++|+|+++| +++...
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g-~~i~~~  352 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDG-QPLHNL  352 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECC-EEcccc
Confidence            3789999 9995           356888888     78999999999999999999999985 899999887 333110


Q ss_pred             hCCC-ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCee
Q psy17514         68 NGQA-GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHF  142 (159)
Q Consensus        68 ~~~~-~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~  142 (159)
                      .... ...++.++|+||++.       ..+++.+||.+|+.++..............+++.++++.++|. .   ..+..
T Consensus       353 ~~~~~~~~~~~i~~v~q~~~-------~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  425 (529)
T PRK15134        353 NRRQLLPVRHRIQVVFQDPN-------SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAE  425 (529)
T ss_pred             chhhHHHhhhceEEEEeCch-------hhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCcc
Confidence            1000 012457999999852       1356778999998764220000001112235678899999995 2   45778


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      ||+ |+   +||++++.+|+
T Consensus       426 LSgG~~qrv~la~al~~~p~  445 (529)
T PRK15134        426 FSGGQRQRIAIARALILKPS  445 (529)
T ss_pred             CCHHHHHHHHHHHHHhCCCC
Confidence            888 33   99999999986

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.80  E-value=3.3e-20  Score=149.94  Aligned_cols=128  Identities=16%  Similarity=0.198  Sum_probs=98.0

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|+++.+|.+++     |++++|+|||||||||||++|+|++.|++|+|++.+              ...|
T Consensus       322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~--------------~~~i  387 (552)
T TIGR03719       322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE--------------TVKL  387 (552)
T ss_pred             EEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC--------------ceEE
Confidence            4899999 9998888898888     789999999999999999999999999999998732              1269


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~ia  150 (159)
                      +|++|++.        .+++.+|+.+++.++... ... ..  ...++.++++.+++..    ..+..+|+ |+   +||
T Consensus       388 ~~v~q~~~--------~~~~~~tv~e~l~~~~~~-~~~-~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la  455 (552)
T TIGR03719       388 AYVDQSRD--------ALDPNKTVWEEISGGLDI-IQL-GK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA  455 (552)
T ss_pred             EEEeCCcc--------ccCCCCcHHHHHHhhccc-ccc-Cc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence            99999741        256667899988765320 111 11  1234667899999952    35677777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       456 ~al~~~p~  463 (552)
T TIGR03719       456 KTLKSGGN  463 (552)
T ss_pred             HHHhhCCC
Confidence            99999986

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.80  E-value=7.8e-21  Score=132.51  Aligned_cols=88  Identities=15%  Similarity=0.295  Sum_probs=67.9

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|++..++++++     +++++|+||||||||||+++|+|+++|.+|++.+++ .++....   ...++.++
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g-~~~~~~~---~~~~~~i~   76 (173)
T cd03230           1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG-KDIKKEP---EEVKRRIG   76 (173)
T ss_pred             CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EEcccch---HhhhccEE
Confidence            468899 8888777888887     689999999999999999999999999999999887 3321101   12346799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEE
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQI  106 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i  106 (159)
                      +++|++         .+++.+|+.+|+
T Consensus        77 ~~~q~~---------~~~~~~tv~~~~   94 (173)
T cd03230          77 YLPEEP---------SLYENLTVRENL   94 (173)
T ss_pred             EEecCC---------ccccCCcHHHHh
Confidence            999985         345555676665

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.80  E-value=2.9e-21  Score=140.88  Aligned_cols=133  Identities=15%  Similarity=0.137  Sum_probs=91.9

Q ss_pred             eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCC
Q psy17514         12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSD   86 (159)
Q Consensus        12 ~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~   86 (159)
                      +.|+.+++|.+++     +++++|+|||||||||||++|+|+++|++|+|.+++ .+... .  ....++.+++++|...
T Consensus        29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g-~~~~~-~--~~~~~~~i~~~~~~~~  104 (236)
T cd03267          29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG-LVPWK-R--RKKFLRRIGVVFGQKT  104 (236)
T ss_pred             cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-EEccc-c--chhhcccEEEEcCCcc
Confidence            4455667888887     689999999999999999999999999999999887 22211 1  1123567899985421


Q ss_pred             CCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514         87 KKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus        87 ~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                              .+++.+|+.+|+.+...  ..........+++.++++.+++..   ..+..+|+ |+   ++|++++.+|+
T Consensus       105 --------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~  173 (236)
T cd03267         105 --------QLWWDLPVIDSFYLLAA--IYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPE  173 (236)
T ss_pred             --------ccCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence                    35566788888765321  110011122345678889999865   34566776 33   99999999986

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.80  E-value=9.7e-21  Score=156.90  Aligned_cols=134  Identities=13%  Similarity=0.139  Sum_probs=101.1

Q ss_pred             EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ .+|+ +..+|++++     |+.++|+||||||||||+++|+|++.|++|+|.++| .++...+.  ...++.
T Consensus       473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg-~~i~~~~~--~~lr~~  549 (708)
T TIGR01193       473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG-FSLKDIDR--HTLRQF  549 (708)
T ss_pred             cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC-EEHHHcCH--HHHHHh
Confidence            4899999 9996 457888888     789999999999999999999999999999999998 44432121  124678


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l  143 (159)
                      |++++|++         .+|+ -|+++|+.++..       ...+.+++.++++.+++..              +....+
T Consensus       550 i~~v~Q~~---------~lf~-gTI~eNi~l~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L  612 (708)
T TIGR01193       550 INYLPQEP---------YIFS-GSILENLLLGAK-------ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI  612 (708)
T ss_pred             eEEEecCc---------eehh-HHHHHHHhccCC-------CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence            99999996         3554 499999988621       1234566777777666532              233556


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +|||++..+|+
T Consensus       613 SgGQrQRialARall~~p~  631 (708)
T TIGR01193       613 SGGQKQRIALARALLTDSK  631 (708)
T ss_pred             CHHHHHHHHHHHHHhhCCC
Confidence            66 43   99999999996

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.80  E-value=1.3e-20  Score=137.23  Aligned_cols=136  Identities=13%  Similarity=0.124  Sum_probs=91.5

Q ss_pred             EEEeCe-eeecCC--eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          6 MVLDGF-KSYGTR--VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~~--~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      |+++|+ +.|++.  .++.+++     +++++|+||||||||||+++|+|+++|++|++.++| .++.. .. ....++.
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~-~~~~~~~   77 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDG-HDVRD-YT-LASLRRQ   77 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECC-EEhhh-CC-HHHHHhh
Confidence            468899 899764  6778777     789999999999999999999999999999999887 33211 11 1112457


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHH-----HHHHHHHhc--Cccc---CCCeeEEe-C
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPK-----RVSDLFSSV--NLNV---NNPHFLIM-Q  146 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~---~~~~~l~~-q  146 (159)
                      +++++|++         .+++ .|+.+|+.+.... +   ......+     .+.++++.+  ++..   ..+..+|+ |
T Consensus        78 i~~~~q~~---------~~~~-~tv~enl~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~  143 (234)
T cd03251          78 IGLVSQDV---------FLFN-DTVAENIAYGRPG-A---TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQ  143 (234)
T ss_pred             EEEeCCCC---------eecc-ccHHHHhhccCCC-C---CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHH
Confidence            99999885         3444 5888888765321 0   1000000     123344444  3432   34567777 3


Q ss_pred             h---hHhHhhcCCCC
Q psy17514        147 G---RVTKVLNMKPH  158 (159)
Q Consensus       147 ~---~ia~~l~~~p~  158 (159)
                      +   ++|++++.+|+
T Consensus       144 ~qrv~la~al~~~p~  158 (234)
T cd03251         144 RQRIAIARALLKDPP  158 (234)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            3   99999999986

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=4.4e-20  Score=148.56  Aligned_cols=126  Identities=16%  Similarity=0.204  Sum_probs=97.0

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|+++.++.+++     |++++|+|||||||||||++|+|++.|++|+|.+.+              +..+
T Consensus       319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------------~~~i  384 (530)
T PRK15064        319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE--------------NANI  384 (530)
T ss_pred             eEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC--------------ceEE
Confidence            5899999 9998888888887     789999999999999999999999999999998754              2469


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~---~ia  150 (159)
                      +|++|++..       .+++.+|+.+++....       ......+++.++++.+++. .   ..+..+|+ |+   +||
T Consensus       385 ~~~~q~~~~-------~~~~~~t~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la  450 (530)
T PRK15064        385 GYYAQDHAY-------DFENDLTLFDWMSQWR-------QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG  450 (530)
T ss_pred             EEEcccccc-------cCCCCCcHHHHHHHhc-------cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHH
Confidence            999997521       1344567777654210       0112346788999999984 2   45778877 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       451 ~al~~~p~  458 (530)
T PRK15064        451 KLMMQKPN  458 (530)
T ss_pred             HHHhcCCC
Confidence            99999986

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.80  E-value=1.5e-20  Score=139.78  Aligned_cols=131  Identities=11%  Similarity=0.099  Sum_probs=96.6

Q ss_pred             EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ +.|.  ...+|++++     |++++|+|+||||||||+++|+|++. .+|+|+++| .++....  ....++
T Consensus         2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g-~~i~~~~--~~~lr~   77 (275)
T cd03289           2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDG-VSWNSVP--LQKWRK   77 (275)
T ss_pred             eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECC-EEhhhCC--HHHHhh
Confidence            4789999 9994  456888888     78999999999999999999999998 789999988 3332111  112356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCee-----------
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHF-----------  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~-----------  142 (159)
                      .|+|++|++         .+++ .|+.+|+....         ....+++.++++.++|..   ..|..           
T Consensus        78 ~i~~v~q~~---------~lf~-~tv~~nl~~~~---------~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~  138 (275)
T cd03289          78 AFGVIPQKV---------FIFS-GTFRKNLDPYG---------KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCV  138 (275)
T ss_pred             hEEEECCCc---------ccch-hhHHHHhhhcc---------CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCC
Confidence            799999986         3555 38888885321         123457788888898864   33433           


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |.   ++||+++.+|+
T Consensus       139 LS~G~~qrl~LaRall~~p~  158 (275)
T cd03289         139 LSHGHKQLMCLARSVLSKAK  158 (275)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            666 33   99999999986

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.80  E-value=1.6e-20  Score=136.99  Aligned_cols=132  Identities=19%  Similarity=0.238  Sum_probs=90.9

Q ss_pred             EEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          6 MVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      |+++|+ +.|+.  ..++.+++     +++++|+||||||||||+++|+|+++|++|+|.++| .++.. .. ....++.
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~-~~~~~~~   77 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDG-HDLAL-AD-PAWLRRQ   77 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC-eehHh-cC-HHHHhhc
Confidence            467899 88863  45788877     789999999999999999999999999999999988 33321 11 1113467


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHH---------HHHHHhc--Cccc---CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRV---------SDLFSSV--NLNV---NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~---~~~~~l  143 (159)
                      +++++|++         .+++ .|+.+|+.+...      ..  ....+         .++++.+  ++..   ..+..+
T Consensus        78 i~~~~q~~---------~~~~-~tv~~nl~~~~~------~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~L  139 (237)
T cd03252          78 VGVVLQEN---------VLFN-RSIRDNIALADP------GM--SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGL  139 (237)
T ss_pred             EEEEcCCc---------hhcc-chHHHHhhccCC------CC--CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcC
Confidence            99999985         2443 589999876431      00  11222         2333333  3322   356677


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +|||+++.+|+
T Consensus       140 SgG~~qrv~laral~~~p~  158 (237)
T cd03252         140 SGGQRQRIAIARALIHNPR  158 (237)
T ss_pred             CHHHHHHHHHHHHHhhCCC
Confidence            77 33   99999999986

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.79  E-value=7.7e-21  Score=154.60  Aligned_cols=132  Identities=11%  Similarity=0.116  Sum_probs=98.5

Q ss_pred             EEEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .++++|+ ..| ++.++|++++     |+.++|+||||||||||++.|+|++ |.+|+|.++| .++...+.  ...++.
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g-~~i~~~~~--~~lr~~  424 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKING-IELRELDP--ESWRKH  424 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECC-EecccCCH--HHHHhh
Confidence            4889999 544 5667888887     7999999999999999999999999 8999999988 44321111  224678


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l  143 (159)
                      |++|+|++         .+|+ -|+++||.++.        ...+++++.++++..++.+              +.-..|
T Consensus       425 i~~v~Q~~---------~LF~-~TI~eNI~~g~--------~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~L  486 (588)
T PRK11174        425 LSWVGQNP---------QLPH-GTLRDNVLLGN--------PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL  486 (588)
T ss_pred             eEEecCCC---------cCCC-cCHHHHhhcCC--------CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCC
Confidence            99999996         3554 49999998862        1234567777777666532              233457


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +|||++..+|+
T Consensus       487 SGGQrQRialARAll~~~~  505 (588)
T PRK11174        487 SVGQAQRLALARALLQPCQ  505 (588)
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            77 43   99999999986

>KOG0058|consensus

Probab=99.79  E-value=4.2e-20  Score=148.37  Aligned_cols=133  Identities=15%  Similarity=0.127  Sum_probs=103.2

Q ss_pred             EEEEeCe-eeecCC---eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGTR---VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~~---~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ ..|..+   ++|++++     |+++|||||||+||||+...|-.++.|++|+|..+| .++...+.  .+.+
T Consensus       465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG-~~i~~~~~--~~lr  541 (716)
T KOG0058|consen  465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDG-VPISDINH--KYLR  541 (716)
T ss_pred             eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC-eehhhcCH--HHHH
Confidence            5899999 999765   5788887     799999999999999999999999999999999999 56543232  3357


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------c-------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------V-------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-------~~~~  141 (159)
                      ++|++|-|+|         .+|. -||.|||.++..        ..+++++....+..+-.       .       ++-.
T Consensus       542 ~~Ig~V~QEP---------vLFs-~sI~eNI~YG~~--------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~  603 (716)
T KOG0058|consen  542 RKIGLVGQEP---------VLFS-GSIRENIAYGLD--------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS  603 (716)
T ss_pred             HHeeeeeccc---------eeec-ccHHHHHhcCCC--------CCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence            8999999997         3454 489999999853        33456666555554332       1       3456


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      ++|+ |+   +|||||..+|.
T Consensus       604 qLSGGQKQRIAIARALlr~P~  624 (716)
T KOG0058|consen  604 QLSGGQKQRIAIARALLRNPR  624 (716)
T ss_pred             cccchHHHHHHHHHHHhcCCC
Confidence            8888 54   99999999995

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.79  E-value=1.3e-20  Score=153.19  Aligned_cols=134  Identities=15%  Similarity=0.142  Sum_probs=100.1

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .++++|+ .+|++  ..+|++++     |+.++|+|+||||||||+++|+|+++|++|+|+++| .++...+.  ...+.
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g-~~i~~~~~--~~~~~  417 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG-HDLRDYTL--ASLRN  417 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC-EEhhhcCH--HHHHh
Confidence            5899999 99964  56888887     789999999999999999999999999999999988 34321111  12467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++++|++         .+|+ -|+++|+.++..       .....+++.++++.+++..              +....
T Consensus       418 ~i~~v~Q~~---------~lf~-~Ti~~Ni~~~~~-------~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~  480 (582)
T PRK11176        418 QVALVSQNV---------HLFN-DTIANNIAYART-------EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL  480 (582)
T ss_pred             hceEEccCc---------eeec-chHHHHHhcCCC-------CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCc
Confidence            799999996         3454 499999987521       1134567777777776542              12244


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++||++..+|+
T Consensus       481 LSGGqrQRi~LARall~~~~  500 (582)
T PRK11176        481 LSGGQRQRIAIARALLRDSP  500 (582)
T ss_pred             CCHHHHHHHHHHHHHHhCCC
Confidence            666 33   99999999986

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.79  E-value=4.7e-20  Score=149.11  Aligned_cols=128  Identities=17%  Similarity=0.195  Sum_probs=98.1

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|+++.+|.+++     |++++|+||||||||||+++|+|+++|++|+|.+.+              ...|
T Consensus       324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------------~~~i  389 (556)
T PRK11819        324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE--------------TVKL  389 (556)
T ss_pred             EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC--------------ceEE
Confidence            4899999 9998888899888     789999999999999999999999999999998732              1259


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~ia  150 (159)
                      +|++|++.        .+++.+|+.+|+.++..  ..  +.......+.++++.+++..    ..+..+|+ |+   +||
T Consensus       390 ~~v~q~~~--------~~~~~~tv~e~l~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la  457 (556)
T PRK11819        390 AYVDQSRD--------ALDPNKTVWEEISGGLD--II--KVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLA  457 (556)
T ss_pred             EEEeCchh--------hcCCCCCHHHHHHhhcc--cc--cccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence            99999741        35567789998876532  11  11111234567899999952    35677877 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       458 ~al~~~p~  465 (556)
T PRK11819        458 KTLKQGGN  465 (556)
T ss_pred             HHHhcCCC
Confidence            99999986

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.79  E-value=3.2e-20  Score=132.80  Aligned_cols=128  Identities=13%  Similarity=0.149  Sum_probs=92.6

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ +.|+.  ..++++++     +++++|+|+||||||||+++|+|+..|++|++.+++ .++.. .. ....+.
T Consensus         6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~-~~~~~~   82 (207)
T cd03369           6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDG-IDIST-IP-LEDLRS   82 (207)
T ss_pred             eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECC-EEhHH-CC-HHHHHh
Confidence            5889999 88975  36788887     789999999999999999999999999999999987 33321 11 111346


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEe-Ch---hHhHh
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-q~---~ia~~  152 (159)
                      .|++++|++         .+++ .|+.+|+.+...         ....++.+.++   +. .++..+|+ |.   ++||+
T Consensus        83 ~i~~v~q~~---------~~~~-~tv~~~l~~~~~---------~~~~~~~~~l~---~~-~~~~~LS~G~~qrv~lara  139 (207)
T cd03369          83 SLTIIPQDP---------TLFS-GTIRSNLDPFDE---------YSDEEIYGALR---VS-EGGLNLSQGQRQLLCLARA  139 (207)
T ss_pred             hEEEEecCC---------cccC-ccHHHHhcccCC---------CCHHHHHHHhh---cc-CCCCcCCHHHHHHHHHHHH
Confidence            799999985         2444 488888854211         12234445554   33 56777877 32   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      ++.+|+
T Consensus       140 l~~~p~  145 (207)
T cd03369         140 LLKRPR  145 (207)
T ss_pred             HhhCCC
Confidence            999986

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>KOG0018|consensus

Probab=99.79  E-value=1.7e-19  Score=148.50  Aligned_cols=142  Identities=35%  Similarity=0.609  Sum_probs=117.7

Q ss_pred             eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514          2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT   81 (159)
Q Consensus         2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v   81 (159)
                      .+..|++.|||+|.+.+++-++. .+++||||||||||++++||+++++-.++..|...++++++...    .++.+.++
T Consensus         3 ~L~~lEieNFKSYkGh~~iGPF~-~FTaIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdLIyg~~----i~~~v~l~   77 (1141)
T KOG0018|consen    3 RLLTLEIENFKSYKGHQVIGPFD-RFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIYGKP----IRKPVTLK   77 (1141)
T ss_pred             ceeeeehhccccccCceeecCch-hceeeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHHhcCCc----cCCchhhe
Confidence            46789999999999998776653 89999999999999999999999999999999999899988322    34456678


Q ss_pred             EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCCCC
Q psy17514         82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE  159 (159)
Q Consensus        82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p~~  159 (159)
                      |+-++..          ..+..+.|. ++.+.|++++..++.+++..-|+..+|-.+..+.++.||++..+....|+|
T Consensus        78 Y~~~dg~----------~~~F~R~I~-~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkE  144 (1141)
T KOG0018|consen   78 YEEGDGE----------TRRFTRAIN-GGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKE  144 (1141)
T ss_pred             eecCCch----------hhhhhhhhc-CCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHH
Confidence            8765422          234456666 777899999999999999999999999988788899999888888888865

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.79  E-value=5.9e-21  Score=152.98  Aligned_cols=144  Identities=13%  Similarity=0.155  Sum_probs=99.3

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|+  .++++++     |++++|+||||||||||+++|+|+++|++|+|+++| +++.. .......++.+
T Consensus       265 ~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g-~~~~~-~~~~~~~~~~i  340 (510)
T PRK09700        265 VFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNG-KDISP-RSPLDAVKKGM  340 (510)
T ss_pred             EEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECC-EECCC-CCHHHHHHCCc
Confidence            4889999 6654  3678777     799999999999999999999999999999999987 33210 00001123569


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE---EE----ECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-C
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR---YM----INGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-Q  146 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~---~~----~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q  146 (159)
                      +|++|++..      ..+++++|+.+|+.++....   +.    ........+++.++++.++|. .   ..+..||+ |
T Consensus       341 ~~v~q~~~~------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq  414 (510)
T PRK09700        341 AYITESRRD------NGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGN  414 (510)
T ss_pred             EEccCcccc------CCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHH
Confidence            999997411      13567789999987653200   10    001111234578899999995 3   45677877 3


Q ss_pred             h---hHhHhhcCCCC
Q psy17514        147 G---RVTKVLNMKPH  158 (159)
Q Consensus       147 ~---~ia~~l~~~p~  158 (159)
                      +   +||++++.+|+
T Consensus       415 ~qrv~lAral~~~p~  429 (510)
T PRK09700        415 QQKVLISKWLCCCPE  429 (510)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            3   99999999986

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.79  E-value=1e-20  Score=151.93  Aligned_cols=142  Identities=14%  Similarity=0.165  Sum_probs=100.6

Q ss_pred             EEEEeCe-eeec-----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhh-hHH--HHHHhhC-
Q psy17514          5 SMVLDGF-KSYG-----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN-TLQ--ELIYKNG-   69 (159)
Q Consensus         5 ~l~l~~~-~~~~-----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~-~~~--~~~~~~~-   69 (159)
                      .|+++|+ +.|+     ...++++++     |++++|+||||||||||+++|+|+++|++|+|++. +..  ++..... 
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~  358 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD  358 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence            4899999 9994     246888887     78999999999999999999999999999999984 411  1110000 


Q ss_pred             CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------CCCe
Q psy17514         70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------NNPH  141 (159)
Q Consensus        70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~  141 (159)
                      .....++.++|++|++         .+++.+|+.+|+.+...  ... ......+++.++++.++|..        ..+.
T Consensus       359 ~~~~~~~~i~~v~q~~---------~l~~~~tv~e~l~~~~~--~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  426 (520)
T TIGR03269       359 GRGRAKRYIGILHQEY---------DLYPHRTVLDNLTEAIG--LEL-PDELARMKAVITLKMVGFDEEKAEEILDKYPD  426 (520)
T ss_pred             hHHHHhhhEEEEccCc---------ccCCCCcHHHHHHHHHH--cCC-CHHHHHHHHHHHHHhCCCCCccchhhhhCChh
Confidence            0001235699999985         36677899999875321  110 11112356788999999952        4567


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      .||+ |+   +||++++.+|+
T Consensus       427 ~LSgGq~qrv~laral~~~p~  447 (520)
T TIGR03269       427 ELSEGERHRVALAQVLIKEPR  447 (520)
T ss_pred             hCCHHHHHHHHHHHHHhcCCC
Confidence            8887 33   99999999986

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1.9e-20  Score=150.75  Aligned_cols=130  Identities=11%  Similarity=0.101  Sum_probs=97.2

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ +.|+++++++++|     |++++|+|||||||||||++|+|+++|+.|+|.+.+              ...|+
T Consensus         2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~--------------~~~i~   67 (530)
T PRK15064          2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP--------------NERLG   67 (530)
T ss_pred             EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--------------CCEEE
Confidence            789999 9998888999988     789999999999999999999999999999998764              12589


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCce------------EEE---EC---------------CEEeCHHHHHHH
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNT------------RYM---IN---------------GSSVNPKRVSDL  129 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~------------~~~---~~---------------~~~~~~~~~~~~  129 (159)
                      +++|.+         .+++.+|+.+++.++...            ...   .+               ......+++.++
T Consensus        68 ~~~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (530)
T PRK15064         68 KLRQDQ---------FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL  138 (530)
T ss_pred             EEeccC---------CcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            999975         355667887777653210            000   00               000123567889


Q ss_pred             HHhcCccc----CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        130 FSSVNLNV----NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       130 l~~~~l~~----~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      ++.++|..    ..+..||+ |+   ++|++|+.+|+
T Consensus       139 l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~  175 (530)
T PRK15064        139 LLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPD  175 (530)
T ss_pred             HHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCC
Confidence            99999964    23577777 33   99999999986

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.79  E-value=1.6e-20  Score=152.42  Aligned_cols=133  Identities=14%  Similarity=0.180  Sum_probs=102.5

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ ..|++  +.+|++++     |+.++|+||||||||||+++|+|+++|++|+|.++| .++...+.  ...++
T Consensus       338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g-~~i~~~~~--~~~r~  414 (574)
T PRK11160        338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNG-QPIADYSE--AALRQ  414 (574)
T ss_pred             eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EEhhhCCH--HHHHh
Confidence            5899999 99964  46889888     789999999999999999999999999999999988 34322111  12467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---C----------CCeeE
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---N----------NPHFL  143 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~----------~~~~l  143 (159)
                      .|++++|++         .+|+ -|+++|+.++..        ....+++.++++.+++..   .          ....+
T Consensus       415 ~i~~v~Q~~---------~lf~-~ti~~Ni~~~~~--------~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~L  476 (574)
T PRK11160        415 AISVVSQRV---------HLFS-ATLRDNLLLAAP--------NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQL  476 (574)
T ss_pred             heeEEcccc---------hhhc-ccHHHHhhcCCC--------ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCC
Confidence            899999996         3554 499999987631        235678888888888864   1          33456


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   ++||++..+|+
T Consensus       477 SgGqrqRialARall~~~~  495 (574)
T PRK11160        477 SGGEQRRLGIARALLHDAP  495 (574)
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            66 33   99999999986

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=4.7e-21  Score=153.42  Aligned_cols=146  Identities=10%  Similarity=0.134  Sum_probs=100.9

Q ss_pred             EEEEeCe-eeec---CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-CcccchhhhhHHHHHHhhCCCcee
Q psy17514          5 SMVLDGF-KSYG---TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-IQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         5 ~l~l~~~-~~~~---~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      .|+++|+ +.|+   +..++++++     |++++|+||||||||||+++|+|+++ |++|+|.+++ +++.. .......
T Consensus       259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g-~~~~~-~~~~~~~  336 (506)
T PRK13549        259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDG-KPVKI-RNPQQAI  336 (506)
T ss_pred             eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECC-EECCC-CCHHHHH
Confidence            4899999 8883   456788887     78999999999999999999999998 5899999877 33210 0000112


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE---CCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-C
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI---NGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-Q  146 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q  146 (159)
                      +..++|++|++...      .+++.+|+.+|+.++....+..   .......+++.++++.+++. .   ..+..||+ |
T Consensus       337 ~~~i~~v~q~~~~~------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~  410 (506)
T PRK13549        337 AQGIAMVPEDRKRD------GIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGN  410 (506)
T ss_pred             HCCCEEeCcchhhC------CCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHH
Confidence            45699999985210      2556678999887652111110   01112235678899999995 2   34678877 3


Q ss_pred             h---hHhHhhcCCCC
Q psy17514        147 G---RVTKVLNMKPH  158 (159)
Q Consensus       147 ~---~ia~~l~~~p~  158 (159)
                      +   +||++++.+|+
T Consensus       411 kqrv~lA~al~~~p~  425 (506)
T PRK13549        411 QQKAVLAKCLLLNPK  425 (506)
T ss_pred             HHHHHHHHHHhhCCC
Confidence            3   99999999986

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.79  E-value=6e-21  Score=169.09  Aligned_cols=139  Identities=12%  Similarity=0.064  Sum_probs=105.4

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ |.|++  +.++++++     |++++|+||||||||||+++|+|++.|++|+|++.| .++.. .  ....++
T Consensus      1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G-~~i~~-~--~~~~r~ 2012 (2272)
T TIGR01257      1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAG-KSILT-N--ISDVHQ 2012 (2272)
T ss_pred             eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC-EECcc-h--HHHHhh
Confidence            5899999 99985  57899888     799999999999999999999999999999999988 33311 0  011356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      .|++++|.+         .+++.+|++|++.+...  .+........+.+.++++.++|..   ..+..+|+ |+   ++
T Consensus      2013 ~IGy~pQ~~---------~L~~~LTv~E~L~l~a~--l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257      2013 NMGYCPQFD---------AIDDLLTGREHLYLYAR--LRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred             hEEEEeccc---------cCCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHH
Confidence            799999985         57778999999876422  110111222356778899999975   45677777 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |+|++.+|+
T Consensus      2082 A~ALi~~P~ 2090 (2272)
T TIGR01257      2082 AIALIGCPP 2090 (2272)
T ss_pred             HHHHhcCCC
Confidence            999999996

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=6.4e-21  Score=133.69  Aligned_cols=136  Identities=18%  Similarity=0.157  Sum_probs=96.9

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+.+|+ .+..++.++++++     ||+++|+|||||||||||++|+|-+.|++|++.+++ .++.....  ....+..+
T Consensus         2 i~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g-~~l~~~~~--~~lA~~ra   78 (259)
T COG4559           2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNG-VPLNSWPP--EELARHRA   78 (259)
T ss_pred             eeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCC-cChhhCCH--HHHHHHhh
Confidence            789999 8889999999988     799999999999999999999999999999999988 33322111  11234567


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEE--eCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS--VNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVT  150 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia  150 (159)
                      +.+|+..         +-..+||.|-+.++.... . .+..  +..+.+...++..++..   +.-..||+   |+ ++|
T Consensus        79 VlpQ~s~---------laFpFtv~eVV~mGr~p~-~-~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlA  147 (259)
T COG4559          79 VLPQNSS---------LAFPFTVQEVVQMGRIPH-R-SGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLA  147 (259)
T ss_pred             hcccCcc---------cccceEHHHHHHhccccc-c-cCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHH
Confidence            7888752         222358888888875321 1 1122  23344677888888865   33446777   33 999


Q ss_pred             HhhcC
Q psy17514        151 KVLNM  155 (159)
Q Consensus       151 ~~l~~  155 (159)
                      |+|+.
T Consensus       148 RvLaQ  152 (259)
T COG4559         148 RVLAQ  152 (259)
T ss_pred             HHHHH
Confidence            99865

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.79  E-value=5.3e-21  Score=152.93  Aligned_cols=146  Identities=11%  Similarity=0.126  Sum_probs=100.9

Q ss_pred             EEEEeCe-eee---cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-cccchhhhhHHHHHHhhCCCcee
Q psy17514          5 SMVLDGF-KSY---GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-QVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         5 ~l~l~~~-~~~---~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      .|+++|+ +.|   ++..++++++     |++++|+|||||||||||++|+|+++| ++|+|.+++ +++.. .......
T Consensus       257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g-~~~~~-~~~~~~~  334 (500)
T TIGR02633       257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFING-KPVDI-RNPAQAI  334 (500)
T ss_pred             eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECC-EECCC-CCHHHHH
Confidence            4899999 888   3456788887     789999999999999999999999985 799999877 33210 0000112


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE-EC--CEEeCHHHHHHHHHhcCccc----CCCeeEEe-C
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM-IN--GSSVNPKRVSDLFSSVNLNV----NNPHFLIM-Q  146 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q  146 (159)
                      ++.+++++|++..      ..+++.+|+.+|+.++....+. ..  ......+++.++++.+++..    ..+..||+ |
T Consensus       335 ~~~i~~v~q~~~~------~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq  408 (500)
T TIGR02633       335 RAGIAMVPEDRKR------HGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN  408 (500)
T ss_pred             hCCCEEcCcchhh------CCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence            4579999998421      0256678899988775321111 00  11112356788999999952    34567777 3


Q ss_pred             h---hHhHhhcCCCC
Q psy17514        147 G---RVTKVLNMKPH  158 (159)
Q Consensus       147 ~---~ia~~l~~~p~  158 (159)
                      +   +||++++.+|+
T Consensus       409 kqrv~la~al~~~p~  423 (500)
T TIGR02633       409 QQKAVLAKMLLTNPR  423 (500)
T ss_pred             HHHHHHHHHHhhCCC
Confidence            3   99999999986

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.79  E-value=7.9e-21  Score=137.68  Aligned_cols=138  Identities=18%  Similarity=0.152  Sum_probs=97.5

Q ss_pred             EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC---CcccchhhhhHHHHHHhhCCCc
Q psy17514          6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG---IQVKQVRANTLQELIYKNGQAG   72 (159)
Q Consensus         6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~---~~~g~i~~~~~~~~~~~~~~~~   72 (159)
                      +.++|+ ..|..    ++++.+++     +++++|+||||||||||+++|+|+++   |++|++.++| .++..     .
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g-~~~~~-----~   77 (226)
T cd03234           4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG-QPRKP-----D   77 (226)
T ss_pred             ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECC-EECCh-----H
Confidence            678888 88854    56888887     68999999999999999999999998   8999999887 33211     1


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE-EECCEEeCHHHHHH-HHHhcCccc---CCCeeEEe-C
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY-MINGSSVNPKRVSD-LFSSVNLNV---NNPHFLIM-Q  146 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~-~~~~~~~~~~~~~~-~l~~~~l~~---~~~~~l~~-q  146 (159)
                      ..++.+++++|++         .+++.+|+.+|+.+...... .........+++.+ +++.+++..   ..+..+|+ |
T Consensus        78 ~~~~~i~~~~q~~---------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~  148 (226)
T cd03234          78 QFQKCVAYVRQDD---------ILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGE  148 (226)
T ss_pred             HhcccEEEeCCCC---------ccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHH
Confidence            2356799999985         46777899999876422000 00001111224445 788888864   34567776 3


Q ss_pred             h---hHhHhhcCCCC
Q psy17514        147 G---RVTKVLNMKPH  158 (159)
Q Consensus       147 ~---~ia~~l~~~p~  158 (159)
                      .   ++|++++.+|+
T Consensus       149 ~qrl~laral~~~p~  163 (226)
T cd03234         149 RRRVSIAVQLLWDPK  163 (226)
T ss_pred             HHHHHHHHHHHhCCC
Confidence            3   99999999986

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.79  E-value=2e-20  Score=152.29  Aligned_cols=132  Identities=17%  Similarity=0.273  Sum_probs=101.3

Q ss_pred             EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .++++|+ ..|++ ..+|++++     |+.++|+|+||||||||+++|+|++.|++|+|.++| .++...+.  ...++.
T Consensus       340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg-~~i~~~~~--~~l~~~  416 (592)
T PRK10790        340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG-RPLSSLSH--SVLRQG  416 (592)
T ss_pred             eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC-EEhhhCCH--HHHHhh
Confidence            4889999 88964 56888888     799999999999999999999999999999999998 44422111  224688


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l  143 (159)
                      |++++|++         .+|+. |+++|+.++.         ...++++.++++.+++..              +....+
T Consensus       417 i~~v~Q~~---------~lF~~-Ti~~NI~~~~---------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L  477 (592)
T PRK10790        417 VAMVQQDP---------VVLAD-TFLANVTLGR---------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL  477 (592)
T ss_pred             eEEEccCC---------ccccc-hHHHHHHhCC---------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence            99999996         46664 9999998752         234567788888777653              123456


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   ++||++..+|+
T Consensus       478 SGGqrQRialARaLl~~~~  496 (592)
T PRK10790        478 SVGQKQLLALARVLVQTPQ  496 (592)
T ss_pred             CHHHHHHHHHHHHHHhCCC
Confidence            66 33   99999999885

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.79  E-value=2.3e-20  Score=150.19  Aligned_cols=133  Identities=14%  Similarity=0.130  Sum_probs=101.1

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ .+|++  ++++++++     |+.++|+||||||||||+++|+|+++|++|+|.++| .++...+.  ...++
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g-~~i~~~~~--~~lr~  396 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG-VPLADADA--DSWRD  396 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EehhhCCH--HHHHh
Confidence            5899999 99975  35888888     789999999999999999999999999999999988 44422111  22467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .+++++|++         .+|+ .|+++|+.++..        ...++++.+.++.+++.+              +....
T Consensus       397 ~i~~v~Q~~---------~lf~-~ti~~Ni~~~~~--------~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~  458 (529)
T TIGR02857       397 QIAWVPQHP---------FLFA-GTIAENIRLARP--------DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAG  458 (529)
T ss_pred             heEEEcCCC---------cccC-cCHHHHHhccCC--------CCCHHHHHHHHHHcCcHHHHHhCcccccchhcccccc
Confidence            899999996         3554 499999987531        124567777777777643              23345


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++||++..+|+
T Consensus       459 LSgGq~qri~laRal~~~~~  478 (529)
T TIGR02857       459 LSGGQAQRLALARAFLRDAP  478 (529)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            666 33   99999999986

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.79  E-value=4.4e-20  Score=135.78  Aligned_cols=143  Identities=12%  Similarity=0.146  Sum_probs=96.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHH--hCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFV--LGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~--~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ +.|++..+|.+++     |++++|+|+||||||||+++|+|+  ++|++|++++++ .++..... ....+.
T Consensus         7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g-~~~~~~~~-~~~~~~   84 (252)
T CHL00131          7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG-ESILDLEP-EERAHL   84 (252)
T ss_pred             eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECC-EEcccCCh-hhhhee
Confidence            4899999 9998778888887     689999999999999999999998  578899999987 33211111 111223


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EE-ECCEE--eCHHHHHHHHHhcCccc----CCCe-eEEe-
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YM-INGSS--VNPKRVSDLFSSVNLNV----NNPH-FLIM-  145 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~-~~~~~--~~~~~~~~~l~~~~l~~----~~~~-~l~~-  145 (159)
                      .+++++|++         .+++.+++.+++.+.....  .. .....  ...+++.++++.+++..    ..+. .+|+ 
T Consensus        85 ~~~~~~q~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG  155 (252)
T CHL00131         85 GIFLAFQYP---------IEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGG  155 (252)
T ss_pred             eEEEEeccc---------cccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHH
Confidence            578899885         3555566666654421100  00 00000  11245678899999862    3444 4777 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |.   +||++++.+|+
T Consensus       156 ~~qrv~la~al~~~p~  171 (252)
T CHL00131        156 EKKRNEILQMALLDSE  171 (252)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            33   99999999986

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.79  E-value=5.6e-20  Score=148.58  Aligned_cols=131  Identities=15%  Similarity=0.114  Sum_probs=97.2

Q ss_pred             EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ ++|+ ++.+|.+++     |++++|+|||||||||||++|+|+..|++|+|.+.+              ...
T Consensus         4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------------~~~   69 (552)
T TIGR03719         4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP--------------GIK   69 (552)
T ss_pred             EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--------------CCE
Confidence            4899999 9997 678899888     689999999999999999999999999999997643              136


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-------------EEECCEE---------------------eCH
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-------------YMINGSS---------------------VNP  123 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-------------~~~~~~~---------------------~~~  123 (159)
                      |++++|++         .+++++|+.+|+.++....             +......                     ...
T Consensus        70 i~~v~Q~~---------~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (552)
T TIGR03719        70 VGYLPQEP---------QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLD  140 (552)
T ss_pred             EEEEeccC---------CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhH
Confidence            99999985         3567789999987642100             0000000                     012


Q ss_pred             HHHHHHHHhcCccc--CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        124 KRVSDLFSSVNLNV--NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       124 ~~~~~~l~~~~l~~--~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      +++.++++.+++..  ..+..+|+ |+   +||++++.+|+
T Consensus       141 ~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~  181 (552)
T TIGR03719       141 RKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPD  181 (552)
T ss_pred             HHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCC
Confidence            35667788888853  34567777 33   99999999986

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=2.1e-20  Score=138.52  Aligned_cols=142  Identities=13%  Similarity=0.187  Sum_probs=98.0

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCC--C
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQ--A   71 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~--~   71 (159)
                      .|+++|+ +.|+++.++.+++     +++++|+|+||||||||+++|+|+..|     ++|+|.+++ .++......  .
T Consensus        16 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g-~~~~~~~~~~~~   94 (265)
T PRK14252         16 KSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP-DNVNILSPEVDP   94 (265)
T ss_pred             eEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC-ccccccccccCH
Confidence            5899999 9998878889887     789999999999999999999999874     689998876 222100000  1


Q ss_pred             ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc----c---CCCeeEE
Q psy17514         72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN----V---NNPHFLI  144 (159)
Q Consensus        72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~---~~~~~l~  144 (159)
                      ...++.+++++|++         .+++. |+.+|+.++... ..........+++.++++.+++.    .   ..+..+|
T Consensus        95 ~~~~~~i~~~~q~~---------~~~~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS  163 (265)
T PRK14252         95 IEVRMRISMVFQKP---------NPFPK-SIFENVAYGLRI-RGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLS  163 (265)
T ss_pred             HHHhccEEEEccCC---------cCCcc-hHHHHHHhHHHH-cCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCC
Confidence            12356799999985         35554 888888764210 00011111235667778877763    1   3456676


Q ss_pred             e-Ch---hHhHhhcCCCC
Q psy17514        145 M-QG---RVTKVLNMKPH  158 (159)
Q Consensus       145 ~-q~---~ia~~l~~~p~  158 (159)
                      + |+   +||++++.+|+
T Consensus       164 ~G~~qrv~laral~~~p~  181 (265)
T PRK14252        164 GGQQQRLCIARALATDPE  181 (265)
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            6 33   99999999986

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.78  E-value=3.5e-20  Score=153.51  Aligned_cols=133  Identities=16%  Similarity=0.100  Sum_probs=100.5

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ .+|++   +.+|+++|     |+.++|+||||||||||+++|.|+++|++|+|.++| .++...+.  ...+
T Consensus       478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg-~~i~~~~~--~~lr  554 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG-VPLVQYDH--HYLH  554 (711)
T ss_pred             eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC-EEHHhcCH--HHHH
Confidence            4899999 99964   46888888     799999999999999999999999999999999998 44432111  2246


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~  141 (159)
                      +.|++++|++         .+|+ -|+++|+.++..        ...++++.++++.+++..              +.-.
T Consensus       555 ~~i~~v~Q~~---------~lF~-gTIreNI~~g~~--------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~  616 (711)
T TIGR00958       555 RQVALVGQEP---------VLFS-GSVRENIAYGLT--------DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS  616 (711)
T ss_pred             hhceEEecCc---------cccc-cCHHHHHhcCCC--------CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC
Confidence            7899999996         3444 599999988632        123567777777766542              1224


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      .+|+ |+   +|||++..+|+
T Consensus       617 ~LSGGQkQRlalARALl~~p~  637 (711)
T TIGR00958       617 QLSGGQKQRIAIARALVRKPR  637 (711)
T ss_pred             cCCHHHHHHHHHHHHHhcCCC
Confidence            5666 33   99999999986

>KOG0055|consensus

Probab=99.78  E-value=3e-20  Score=156.43  Aligned_cols=133  Identities=14%  Similarity=0.160  Sum_probs=102.8

Q ss_pred             EEEEeCe-eeecCCe---eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGTRV---EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~---~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .++++|+ .+|+.++   +|++++     |+.++|+|||||||||++..|.+++.|++|+|.++| .++...+  ..+.+
T Consensus       350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG-~di~~~~--~~~lr  426 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDG-EDIRNLN--LKWLR  426 (1228)
T ss_pred             ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcC-ccchhcc--hHHHH
Confidence            5899999 9998764   566666     789999999999999999999999999999999998 4543222  23457


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~  141 (159)
                      .+|++|+|.|          .+...|+.|||.++.        ..++.+++.++++..+...              +.-.
T Consensus       427 ~~iglV~QeP----------vlF~~tI~eNI~~G~--------~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~  488 (1228)
T KOG0055|consen  427 SQIGLVSQEP----------VLFATTIRENIRYGK--------PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV  488 (1228)
T ss_pred             hhcCeeeech----------hhhcccHHHHHhcCC--------CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence            7999999997          333469999999874        2345667777766554321              3556


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      +||+ |+   +|||+|+.+|+
T Consensus       489 qLSGGQKQRIAIARalv~~P~  509 (1228)
T KOG0055|consen  489 QLSGGQKQRIAIARALVRNPK  509 (1228)
T ss_pred             CCChHHHHHHHHHHHHHhCCC
Confidence            6888 44   99999999997

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.78  E-value=3e-20  Score=151.15  Aligned_cols=133  Identities=16%  Similarity=0.209  Sum_probs=98.6

Q ss_pred             EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .++++|+ .+|++ ..+|++++     |+.++|+|+||||||||+++|+|+++|++|+|+++| .++...+  ....++.
T Consensus       334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g-~~i~~~~--~~~~r~~  410 (588)
T PRK13657        334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDG-TDIRTVT--RASLRRN  410 (588)
T ss_pred             eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC-EEhhhCC--HHHHHhh
Confidence            4899999 99965 56888888     799999999999999999999999999999999988 3432211  1124678


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l  143 (159)
                      |++++|++         .+|+ -|+++|+.++..        ...++++.++++.+++..              +....+
T Consensus       411 i~~v~Q~~---------~lf~-~Ti~~Ni~~~~~--------~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~L  472 (588)
T PRK13657        411 IAVVFQDA---------GLFN-RSIEDNIRVGRP--------DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL  472 (588)
T ss_pred             eEEEecCc---------cccc-ccHHHHHhcCCC--------CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCC
Confidence            99999996         3554 499999987521        123456666666655432              233457


Q ss_pred             Ee-C--h-hHhHhhcCCCC
Q psy17514        144 IM-Q--G-RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q--~-~ia~~l~~~p~  158 (159)
                      |+ |  + +|||++..+|+
T Consensus       473 SgGq~QRialARall~~~~  491 (588)
T PRK13657        473 SGGERQRLAIARALLKDPP  491 (588)
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            77 3  3 99999999886

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.78  E-value=3.3e-20  Score=150.36  Aligned_cols=133  Identities=14%  Similarity=0.152  Sum_probs=101.6

Q ss_pred             EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .++++|+ ..|+ +.++++++|     ++.++|+||||||||||++.|.++++|++|+|.++| .++...+.  ...++.
T Consensus       328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg-~dI~~i~~--~~lr~~  404 (567)
T COG1132         328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDG-IDIRDISL--DSLRKR  404 (567)
T ss_pred             eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC-EehhhcCH--HHHHHh
Confidence            4899999 9998 578899888     789999999999999999999999999999999977 44432111  225788


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l  143 (159)
                      |++|+|++         .+|. -||.+|+.++..        ..+++++.+.++..++.+              +....+
T Consensus       405 I~~V~Qd~---------~LF~-~TI~~NI~~g~~--------~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~L  466 (567)
T COG1132         405 IGIVSQDP---------LLFS-GTIRENIALGRP--------DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL  466 (567)
T ss_pred             ccEEcccc---------eeec-ccHHHHHhcCCC--------CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccC
Confidence            99999996         3555 599999998743        134456666666554322              234567


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +|||++..+|+
T Consensus       467 SgGQrQrlaiARall~~~~  485 (567)
T COG1132         467 SGGQRQRLAIARALLRNPP  485 (567)
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            76 44   99999999985

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.78  E-value=7.6e-20  Score=131.86  Aligned_cols=132  Identities=17%  Similarity=0.129  Sum_probs=90.1

Q ss_pred             EEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCceeEEE
Q psy17514          7 VLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAGVTKAS   77 (159)
Q Consensus         7 ~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~   77 (159)
                      .+.|+ +.|+ ...++++++     +++++|+|||||||||||++|+|++.|++|+|.+++ .++.....  .....++.
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~~   80 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSN-KNESEPSFEATRSRNRYS   80 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC-cccccccccccchhhcce
Confidence            46778 8886 456788887     789999999999999999999999999999999987 33211000  01112457


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l  143 (159)
                      ++|++|++         .++ +.|+.+|+.+...  +       ..++..++++.+++..              ..+..+
T Consensus        81 i~~~~q~~---------~~~-~~t~~~nl~~~~~--~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L  141 (218)
T cd03290          81 VAYAAQKP---------WLL-NATVEENITFGSP--F-------NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINL  141 (218)
T ss_pred             EEEEcCCC---------ccc-cccHHHHHhhcCc--C-------CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcC
Confidence            99999985         244 3588888876421  1       1223344455554421              245667


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +||++++.+|+
T Consensus       142 S~G~~qrv~laral~~~p~  160 (218)
T cd03290         142 SGGQRQRICVARALYQNTN  160 (218)
T ss_pred             CHHHHHHHHHHHHHhhCCC
Confidence            76 33   99999999986

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.78  E-value=1.1e-19  Score=149.02  Aligned_cols=128  Identities=15%  Similarity=0.186  Sum_probs=98.1

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|+++.++.+++     |++++|+|||||||||||++|+|+++|++|+|.+ + .            ...|
T Consensus       319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~-~------------~~~i  384 (635)
T PRK11147        319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-G-T------------KLEV  384 (635)
T ss_pred             eEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-C-C------------CcEE
Confidence            4899999 9998888888888     7899999999999999999999999999999987 3 1            1258


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~ia  150 (159)
                      +|++|.+.        .+++++||.+++.+... .....   ....++.++++.+++..    ..+..||+ |+   ++|
T Consensus       385 ~y~~q~~~--------~l~~~~tv~e~l~~~~~-~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la  452 (635)
T PRK11147        385 AYFDQHRA--------ELDPEKTVMDNLAEGKQ-EVMVN---GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLA  452 (635)
T ss_pred             EEEeCccc--------ccCCCCCHHHHHHhhcc-ccccc---chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHH
Confidence            99998741        36677889888876421 11101   12456788999999852    35667777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       453 ~al~~~p~  460 (635)
T PRK11147        453 RLFLKPSN  460 (635)
T ss_pred             HHHhcCCC
Confidence            99999885

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=2.3e-20  Score=141.89  Aligned_cols=141  Identities=16%  Similarity=0.187  Sum_probs=98.1

Q ss_pred             EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCC
Q psy17514          5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQA   71 (159)
Q Consensus         5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~   71 (159)
                      .|+++|+ +.|.  ...+|++++     |++++|+|+|||||||||++|+|+..     |++|+|.++| .++.......
T Consensus        80 ~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG-~~i~~~~~~~  158 (329)
T PRK14257         80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG-TNTRSKKISS  158 (329)
T ss_pred             eEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC-EEccccccch
Confidence            5899999 9995  346888888     78999999999999999999999986     4689999988 3431100000


Q ss_pred             ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE-ECCEEeCHHHHHHHHHhcCcc-------cCCCeeE
Q psy17514         72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM-INGSSVNPKRVSDLFSSVNLN-------VNNPHFL  143 (159)
Q Consensus        72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l  143 (159)
                      ...+..+++++|++         .+++ .|+++|+.++..  +. ........+.+.++++.++|.       ...+..+
T Consensus       159 ~~lr~~i~~v~q~~---------~~~~-~ti~eNi~~~~~--~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~L  226 (329)
T PRK14257        159 LELRTRIGMVFQKP---------TPFE-MSIFDNVAYGPR--NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNAL  226 (329)
T ss_pred             HhhhccEEEEecCC---------ccCC-CcHHHHHHhHHH--hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccC
Confidence            12356799999986         2443 689999986532  11 001111122356778888763       1456777


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +|||+++.+|+
T Consensus       227 SgGqkqRl~LARAl~~~p~  245 (329)
T PRK14257        227 SGGQQQRLCIARAIALEPE  245 (329)
T ss_pred             CHHHHHHHHHHHHHHhCCC
Confidence            77 43   99999999986

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.78  E-value=2.9e-20  Score=132.68  Aligned_cols=119  Identities=11%  Similarity=0.080  Sum_probs=86.9

Q ss_pred             EEEEeCe-eeec----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC---CcccchhhhhHHHHHHhhCCC
Q psy17514          5 SMVLDGF-KSYG----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG---IQVKQVRANTLQELIYKNGQA   71 (159)
Q Consensus         5 ~l~l~~~-~~~~----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~---~~~g~i~~~~~~~~~~~~~~~   71 (159)
                      .+.++|+ +.|+    ++.++.+++     +++++|+||||||||||+++|+|+++   |++|++.+++ .++...   .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g-~~~~~~---~   78 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG-IPYKEF---A   78 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECC-EECccc---h
Confidence            4789999 9995    456788877     68999999999999999999999998   8899999887 232110   0


Q ss_pred             ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEe-Ch---
Q psy17514         72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIM-QG---  147 (159)
Q Consensus        72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-q~---  147 (159)
                      ...++.+++++|++         .+++.+||.+|+.+...  ..                    ....+..+|+ |.   
T Consensus        79 ~~~~~~i~~~~q~~---------~~~~~~tv~~~l~~~~~--~~--------------------~~~~~~~LS~Ge~qrl  127 (202)
T cd03233          79 EKYPGEIIYVSEED---------VHFPTLTVRETLDFALR--CK--------------------GNEFVRGISGGERKRV  127 (202)
T ss_pred             hhhcceEEEEeccc---------ccCCCCcHHHHHhhhhh--hc--------------------cccchhhCCHHHHHHH
Confidence            11356799999974         45666788888765421  00                    2234556666 32   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      ++|++++.+|+
T Consensus       128 ~laral~~~p~  138 (202)
T cd03233         128 SIAEALVSRAS  138 (202)
T ss_pred             HHHHHHhhCCC
Confidence            89999999885

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=7.9e-20  Score=143.99  Aligned_cols=132  Identities=16%  Similarity=0.170  Sum_probs=99.6

Q ss_pred             EEEeCe-eeecCC-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGF-KSYGTR-VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~~~~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      ++++|+ ..|++. +++.+++     ++.++|+|+||||||||+++|.|+++|+.|+|+++| .+......  ..+++++
T Consensus       321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng-~~l~~l~~--~~~~k~i  397 (559)
T COG4988         321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNG-IDLRDLSP--EAWRKQI  397 (559)
T ss_pred             eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECC-ccccccCH--HHHHhHe
Confidence            455699 999765 7788887     689999999999999999999999999999999998 34322122  2357899


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------------CCCeeEEe
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------------NNPHFLIM  145 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------~~~~~l~~  145 (159)
                      ++|.|+|         .+++ -|+++|+.++.        ...+++++.++++..++.+             +.-..+|+
T Consensus       398 ~~v~Q~p---------~lf~-gTireNi~l~~--------~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSg  459 (559)
T COG4988         398 SWVSQNP---------YLFA-GTIRENILLAR--------PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSG  459 (559)
T ss_pred             eeeCCCC---------cccc-ccHHHHhhccC--------CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCH
Confidence            9999997         2444 49999998863        2345678888888877754             22334555


Q ss_pred             -C--h-hHhHhhcCCCC
Q psy17514        146 -Q--G-RVTKVLNMKPH  158 (159)
Q Consensus       146 -q--~-~ia~~l~~~p~  158 (159)
                       |  + ++||++..+++
T Consensus       460 GQ~QRlaLARAll~~~~  476 (559)
T COG4988         460 GQAQRLALARALLSPAS  476 (559)
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence             2  3 99999988753

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.78  E-value=9.1e-20  Score=126.34  Aligned_cols=79  Identities=16%  Similarity=0.161  Sum_probs=63.5

Q ss_pred             EEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      |+++|+ +.|+ ++.++++++     +++++|+||||||||||+++|+|+++|++|++.+.+              .+.+
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~--------------~~~i   66 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE--------------GEDL   66 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--------------CceE
Confidence            467889 8885 457888887     789999999999999999999999999999998754              1469


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEc
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISI  108 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~  108 (159)
                      +|++|++.         + +..|+.+|+.+
T Consensus        67 ~~~~q~~~---------~-~~~tv~~nl~~   86 (166)
T cd03223          67 LFLPQRPY---------L-PLGTLREQLIY   86 (166)
T ss_pred             EEECCCCc---------c-ccccHHHHhhc
Confidence            99999851         2 23577777654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.78  E-value=3e-20  Score=135.38  Aligned_cols=132  Identities=14%  Similarity=0.154  Sum_probs=89.4

Q ss_pred             EEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      |+++|+ +.|+ +..++.+++     |++++|+||||||||||+++|+|+.+|++|++.+++ .++.. .. ....++.+
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g-~~~~~-~~-~~~~~~~i   77 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDG-QDIRE-VT-LDSLRRAI   77 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECC-EEhhh-CC-HHHHHhhE
Confidence            468899 8885 466788877     789999999999999999999999999999999877 33321 11 11124569


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcC-----------ccc---CCCeeEE
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVN-----------LNV---NNPHFLI  144 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~---~~~~~l~  144 (159)
                      +|++|++         .+++ .|+.+|+.++..      .  .....+.+.++.++           +..   ..+..+|
T Consensus        78 ~~~~q~~---------~~~~-~tv~~nl~~~~~------~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS  139 (236)
T cd03253          78 GVVPQDT---------VLFN-DTIGYNIRYGRP------D--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLS  139 (236)
T ss_pred             EEECCCC---------hhhc-chHHHHHhhcCC------C--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCC
Confidence            9999985         3444 588888876421      0  11122233233222           221   2345677


Q ss_pred             e-Ch---hHhHhhcCCCC
Q psy17514        145 M-QG---RVTKVLNMKPH  158 (159)
Q Consensus       145 ~-q~---~ia~~l~~~p~  158 (159)
                      + |+   ++|++|+.+|+
T Consensus       140 ~G~~~rl~la~aL~~~p~  157 (236)
T cd03253         140 GGEKQRVAIARAILKNPP  157 (236)
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            7 33   99999999996

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.78  E-value=4e-18  Score=147.32  Aligned_cols=151  Identities=35%  Similarity=0.610  Sum_probs=110.8

Q ss_pred             EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcc-cchhhhhHHHHHHhhCC--CceeEEEEE
Q psy17514          3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQV-KQVRANTLQELIYKNGQ--AGVTKASVT   79 (159)
Q Consensus         3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~-g~i~~~~~~~~~~~~~~--~~~~~~~i~   79 (159)
                      +..|++.||++|.+...+ ++++++++|+|||||||||||++|.++++... ..++.....++++.+..  .....+.|.
T Consensus         2 i~~l~~~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v~   80 (1179)
T TIGR02168         2 LKKLELAGFKSFADPTTI-NFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEVE   80 (1179)
T ss_pred             eeEEEEeCccccCCCeeE-EecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEEE
Confidence            678999999999876544 68899999999999999999999999986543 23444433455553321  122467899


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCCC
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPH  158 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p~  158 (159)
                      ++|++++.. .|.  ..+..++|.+.+...+.+.|++++.......+.+++..+++..+++ .+++||.|..++.++|+
T Consensus        81 ~~~~~~~~~-~~~--~~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~-~~~~q~~~~~~~~~~~~  155 (1179)
T TIGR02168        81 LVFDNSDGL-LPG--ADYSEISITRRLYRDGESEYFINGQPCRLKDIQDLFLDTGLGKRSY-SIIEQGKISEIIEAKPE  155 (1179)
T ss_pred             EEEecCCCC-CCC--CCCCeEEEEEEEeeCCCceeeECCCcccHHHHHHHHhccCCCcccc-hheecccHHHHHcCCHH
Confidence            999875321 110  0134578998887766667888888777778899999999987654 57789999999988885

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.77  E-value=5e-20  Score=128.98  Aligned_cols=76  Identities=16%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             EEEeCe-eeecCC--eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          6 MVLDGF-KSYGTR--VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~~--~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      |+++|+ +.|.+.  .++++++     +++++|+||||||||||+++|+|+.+|++|++.+++ .++... .  ...++.
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g-~~~~~~-~--~~~~~~   76 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDG-VPVSDL-E--KALSSL   76 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC-EEHHHH-H--HHHHhh
Confidence            467899 888764  6788877     789999999999999999999999999999999887 332211 0  113467


Q ss_pred             EEEEEEcC
Q psy17514         78 VTLTFDNS   85 (159)
Q Consensus        78 i~~v~q~~   85 (159)
                      +++++|++
T Consensus        77 i~~~~q~~   84 (178)
T cd03247          77 ISVLNQRP   84 (178)
T ss_pred             EEEEccCC
Confidence            99999875

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.77  E-value=3.8e-20  Score=135.01  Aligned_cols=132  Identities=13%  Similarity=0.109  Sum_probs=89.0

Q ss_pred             EEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          6 MVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         6 l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      |+++|+ +.|++   ..++.+++     |++++|+||||||||||+++|+|+++|++|++.++| .++.....  ...++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~~--~~~~~   77 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDG-VDIRDLNL--RWLRS   77 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECC-EehhhcCH--HHHHh
Confidence            468899 88863   35778777     789999999999999999999999999999999887 33321111  11245


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHH---------Hhc--Cccc---CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLF---------SSV--NLNV---NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l---------~~~--~l~~---~~~~~  142 (159)
                      .++|++|++         .+++ .|+.+|+.++..  .    .  ..+++.+.+         +.+  ++..   ..+..
T Consensus        78 ~i~~~~q~~---------~~~~-~tv~e~l~~~~~--~----~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  139 (238)
T cd03249          78 QIGLVSQEP---------VLFD-GTIAENIRYGKP--D----A--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQ  139 (238)
T ss_pred             hEEEECCch---------hhhh-hhHHHHhhccCC--C----C--CHHHHHHHHHHcChHHHHHhhccccceeeccCCcc
Confidence            699999985         2444 488888876432  0    0  112222222         222  2221   34567


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++|++++.+|+
T Consensus       140 LS~G~~qrv~la~al~~~p~  159 (238)
T cd03249         140 LSGGQKQRIAIARALLRNPK  159 (238)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            777 33   99999999986

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.77  E-value=5e-20  Score=139.82  Aligned_cols=133  Identities=15%  Similarity=0.188  Sum_probs=100.1

Q ss_pred             CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh-CCCceeEEEEEEEEEcCCCCCC
Q psy17514         17 RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN-GQAGVTKASVTLTFDNSDKKNC   90 (159)
Q Consensus        17 ~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~i~~v~q~~~~~~~   90 (159)
                      ..+++++|     ++..+|+|+||||||||=.+|..++.+. |.|++.| +++.... ..-...++++.+|||+|..   
T Consensus       300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G-~~i~~~~~~~mrplR~~mQvVFQDPyg---  374 (534)
T COG4172         300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDG-QDIDGLSRKEMRPLRRRMQVVFQDPYG---  374 (534)
T ss_pred             eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECC-ccccccChhhhhhhhhhceEEEeCCCC---
Confidence            45667776     6899999999999999999999999887 9999998 5542211 1112247789999999854   


Q ss_pred             CCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514         91 PIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus        91 ~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                          .+.|.+||.+-|.-+....-..-+..+..+++.+.|+.+||+.    ++|..+|+ |+   +|||+++.+|+
T Consensus       375 ----SLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~  446 (534)
T COG4172         375 ----SLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPE  446 (534)
T ss_pred             ----CCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCc
Confidence                4678899988887764311111122334578899999999987    68999999 55   99999999996

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.77  E-value=4.7e-20  Score=152.53  Aligned_cols=133  Identities=12%  Similarity=0.083  Sum_probs=101.2

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ .+|++  ..+|++++     |+.++|+|+||||||||+++|+|+++|++|+|.++| .++...+.  ...+.
T Consensus       463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg-~~l~~~~~--~~lr~  539 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG-VDIRQIDP--ADLRR  539 (694)
T ss_pred             eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EEhhhCCH--HHHHh
Confidence            5899999 99963  45888888     789999999999999999999999999999999998 34322111  12467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++|+|++         .+|+ -|+++|+.++..        ....+++.++++.+++.+              +....
T Consensus       540 ~i~~v~Q~~---------~lf~-~TI~eNi~~~~~--------~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~  601 (694)
T TIGR03375       540 NIGYVPQDP---------RLFY-GTLRDNIALGAP--------YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRS  601 (694)
T ss_pred             ccEEECCCh---------hhhh-hhHHHHHhCCCC--------CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCC
Confidence            899999996         3454 499999987631        234567777777776643              22345


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++||++..+|+
T Consensus       602 LSgGQrQRlalARall~~p~  621 (694)
T TIGR03375       602 LSGGQRQAVALARALLRDPP  621 (694)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            666 43   99999999986

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.77  E-value=9.1e-21  Score=137.25  Aligned_cols=130  Identities=12%  Similarity=0.082  Sum_probs=91.0

Q ss_pred             EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      |..|.++++ +.|++.+++++++     +++++|+||||||||||+++|+|+.+|++|++.+++ .++.           
T Consensus        20 ~~~l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~-----------   87 (224)
T cd03220          20 LKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-RVSS-----------   87 (224)
T ss_pred             hhhhhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEch-----------
Confidence            334778888 8899998999888     689999999999999999999999999999999877 2110           


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                          .++..        ..+.+.+|+.+|+.+...  ..........+++.++++.+++..   ..+..+|+ |+   ++
T Consensus        88 ----~~~~~--------~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  153 (224)
T cd03220          88 ----LLGLG--------GGFNPELTGRENIYLNGR--LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAF  153 (224)
T ss_pred             ----hhccc--------ccCCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence                00100        123345688888765421  110011122345677888889865   34567776 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |++++.+|+
T Consensus       154 aral~~~p~  162 (224)
T cd03220         154 AIATALEPD  162 (224)
T ss_pred             HHHHhcCCC
Confidence            999999985

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.77  E-value=5.4e-20  Score=128.25  Aligned_cols=88  Identities=19%  Similarity=0.155  Sum_probs=65.6

Q ss_pred             EEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          6 MVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      |+++|+ +.|++  ..++.+++     +++++|+||||||||||+++|+|+++|++|++.+++ .++.. .. ....++.
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g-~~~~~-~~-~~~~~~~   77 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG-ADISQ-WD-PNELGDH   77 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC-EEccc-CC-HHHHHhh
Confidence            468899 88865  45777776     789999999999999999999999999999999887 33211 00 0113467


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQI  106 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i  106 (159)
                      +++++|++         .+++. |+.+|+
T Consensus        78 i~~~~q~~---------~~~~~-tv~~~l   96 (173)
T cd03246          78 VGYLPQDD---------ELFSG-SIAENI   96 (173)
T ss_pred             eEEECCCC---------ccccC-cHHHHC
Confidence            99999985         24443 777765

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.76  E-value=1.5e-19  Score=132.68  Aligned_cols=142  Identities=11%  Similarity=0.117  Sum_probs=90.3

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      |+++|+ +.|++..++.+++     +++++|+||||||||||+++|+|++  +|++|++.++| .++.... .....+..
T Consensus         2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g-~~~~~~~-~~~~~~~~   79 (248)
T PRK09580          2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG-KDLLELS-PEDRAGEG   79 (248)
T ss_pred             eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECC-CccccCC-HHHHhhcc
Confidence            789999 9998888899888     6899999999999999999999995  68999999887 3321101 01112356


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCc--eEEEEC---CEEeCHHHHHHHHHhcCccc---CC-Ce-eEEe-C
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSN--TRYMIN---GSSVNPKRVSDLFSSVNLNV---NN-PH-FLIM-Q  146 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~--~~~~~~---~~~~~~~~~~~~l~~~~l~~---~~-~~-~l~~-q  146 (159)
                      +++++|++.         +++.++...++.....  ..+...   ......+.+.++++.+++..   +. +. .+|+ |
T Consensus        80 i~~~~q~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~  150 (248)
T PRK09580         80 IFMAFQYPV---------EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE  150 (248)
T ss_pred             eEEEecCch---------hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence            999999852         2332222111110000  001000   00011345677888888842   22 32 5776 3


Q ss_pred             h---hHhHhhcCCCC
Q psy17514        147 G---RVTKVLNMKPH  158 (159)
Q Consensus       147 ~---~ia~~l~~~p~  158 (159)
                      +   +||++++.+|+
T Consensus       151 ~qrv~laral~~~p~  165 (248)
T PRK09580        151 KKRNDILQMAVLEPE  165 (248)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            3   99999999996

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.76  E-value=2.2e-20  Score=153.24  Aligned_cols=142  Identities=17%  Similarity=0.234  Sum_probs=102.6

Q ss_pred             EEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC--c
Q psy17514          5 SMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA--G   72 (159)
Q Consensus         5 ~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~--~   72 (159)
                      .|+++|+ +.|++    ..++++++     +++++|+||||||||||+++|+|+++|++|++.++| +++.......  .
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g-~~i~~~~~~~~~~   82 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAG-QDVATLDADALAQ   82 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC-EEcCcCCHHHHHH
Confidence            5899999 99953    46788887     789999999999999999999999999999999987 3321100000  0


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch-
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-  147 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-  147 (159)
                      ..++.++++||++         .+++++|+.+|+.+...  ..........+++.++++.++|..   ..+..+|+ |. 
T Consensus        83 ~~~~~i~~v~q~~---------~l~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~q  151 (648)
T PRK10535         83 LRREHFGFIFQRY---------HLLSHLTAAQNVEVPAV--YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQ  151 (648)
T ss_pred             HHhccEEEEeCCc---------ccCCCCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHH
Confidence            1246799999985         46777788888875321  110011223456788999999976   35667777 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        ++||+|+.+|+
T Consensus       152 rv~LAraL~~~P~  164 (648)
T PRK10535        152 RVSIARALMNGGQ  164 (648)
T ss_pred             HHHHHHHHhcCCC
Confidence              99999999996

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.76  E-value=1.1e-19  Score=147.42  Aligned_cols=134  Identities=16%  Similarity=0.158  Sum_probs=100.0

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ .+|.+  ..+|++++     |+.++|+|+||||||||+++|+|++.|++|+|.++| .++...+  ....+.
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g-~~i~~~~--~~~~~~  406 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG-HDLADYT--LASLRR  406 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC-EeHHhcC--HHHHHh
Confidence            5899999 88864  45788887     799999999999999999999999999999999988 4432211  112467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++++|+|         .+|+ -|+++|+.++..       +...++++.++++.+++..              +.-..
T Consensus       407 ~i~~v~Q~~---------~lf~-~Ti~~Ni~~~~~-------~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~  469 (571)
T TIGR02203       407 QVALVSQDV---------VLFN-DTIANNIAYGRT-------EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL  469 (571)
T ss_pred             hceEEccCc---------cccc-ccHHHHHhcCCC-------CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCc
Confidence            899999996         2443 599999987621       1234577888888777642              11234


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++||++..+|+
T Consensus       470 LSgGqrQRiaLARall~~~~  489 (571)
T TIGR02203       470 LSGGQRQRLAIARALLKDAP  489 (571)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            666 33   99999999886

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.76  E-value=1.2e-20  Score=137.06  Aligned_cols=117  Identities=18%  Similarity=0.196  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR  104 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~  104 (159)
                      +++++|+||||||||||+++|+|+++|++|+|.++| .++..       .....++++|++         .+++.+|+.+
T Consensus        11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-------~~~~~~~v~q~~---------~l~~~~tv~e   73 (230)
T TIGR01184        11 GEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEG-KQITE-------PGPDRMVVFQNY---------SLLPWLTVRE   73 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCC-------CChhheEEecCc---------ccCCCCCHHH
Confidence            799999999999999999999999999999999887 22210       111247899875         4667779999


Q ss_pred             EEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        105 QISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       105 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      |+.+.....+.........+++.++++.++|..   ..+..+|+ |+   +||++++.+|+
T Consensus        74 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~  134 (230)
T TIGR01184        74 NIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPK  134 (230)
T ss_pred             HHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            987642100110011122345788899999975   45667777 33   99999999986

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.76  E-value=4.5e-20  Score=130.86  Aligned_cols=89  Identities=15%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             EEEEeCe-eeecC------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhHHHHHHhhCC
Q psy17514          5 SMVLDGF-KSYGT------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTLQELIYKNGQ   70 (159)
Q Consensus         5 ~l~l~~~-~~~~~------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~~~~~~~~~~   70 (159)
                      .|+++|+ +.|+.      ..++.+++     +++++|+||||||||||+++|+|++  +|++|++.+++ +++..    
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g-~~~~~----   77 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLING-RPLDK----   77 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECC-EeCch----
Confidence            4789999 99975      57888887     6899999999999999999999999  99999999987 33211    


Q ss_pred             CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEc
Q psy17514         71 AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISI  108 (159)
Q Consensus        71 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~  108 (159)
                       ...++.+++++|++         .+++.+|+.+|+.+
T Consensus        78 -~~~~~~i~~~~q~~---------~~~~~~t~~~~i~~  105 (194)
T cd03213          78 -RSFRKIIGYVPQDD---------ILHPTLTVRETLMF  105 (194)
T ss_pred             -HhhhheEEEccCcc---------cCCCCCcHHHHHHH
Confidence             12356799999885         35556677776643

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1e-19  Score=129.02  Aligned_cols=143  Identities=14%  Similarity=0.153  Sum_probs=101.1

Q ss_pred             EEEEeCe-eeecCC-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGTR-VEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ .+..++ .+|+++|     +|+.+|+||||||||||..+|+|.-  ..+.|+|.++| +++.... .....+
T Consensus         3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~G-edI~~l~-~~ERAr   80 (251)
T COG0396           3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDG-EDILELS-PDERAR   80 (251)
T ss_pred             eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECC-cccccCC-HhHHHh
Confidence            3899999 888884 8999998     7999999999999999999999986  44599999999 6664422 233357


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC-EEeCHHHHHHHHHhcCccc----CC-CeeEEe-Ch-
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING-SSVNPKRVSDLFSSVNLNV----NN-PHFLIM-QG-  147 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~-~~~l~~-q~-  147 (159)
                      +.|.+.||.|.         -++..++.+.+...........+ ...-.+++.+.++.++++.    ++ ...+|+ .+ 
T Consensus        81 ~GifLafQ~P~---------ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkK  151 (251)
T COG0396          81 AGIFLAFQYPV---------EIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKK  151 (251)
T ss_pred             cCCEEeecCCc---------cCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHH
Confidence            88999999973         44555555544432210000000 1123567888899999986    22 235555 22 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        .|.++++++|+
T Consensus       152 R~EilQ~~~lePk  164 (251)
T COG0396         152 RNEILQLLLLEPK  164 (251)
T ss_pred             HHHHHHHHhcCCC
Confidence              99999999996

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.76  E-value=2.3e-19  Score=128.33  Aligned_cols=145  Identities=14%  Similarity=0.079  Sum_probs=100.9

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ ..|+++.+|.+++     ++--+|+|||||||||||+.+++-..|++|.+...| +.+-+ .......+++|
T Consensus        31 li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G-~~~G~-~~~~~elrk~I  108 (257)
T COG1119          31 LIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLG-RRFGK-GETIFELRKRI  108 (257)
T ss_pred             eEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeee-eeccC-CcchHHHHHHh
Confidence            5899999 9999999999998     788899999999999999999999999988877765 22111 11112357789


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE---EEECCEEeCHHHHHHHHHhcCccc--CCCeeEEeCh-----h
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR---YMINGSSVNPKRVSDLFSSVNLNV--NNPHFLIMQG-----R  148 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~l~~q~-----~  148 (159)
                      |+|...-..       .+.++.++++-+..+.-..   |...-......++..+++.+++..  +.+..-+|||     -
T Consensus       109 G~vS~~L~~-------~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvL  181 (257)
T COG1119         109 GLVSSELHE-------RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVL  181 (257)
T ss_pred             CccCHHHHh-------hcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHH
Confidence            998743221       1223456777665543211   111112223456778899999986  5566556655     8


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      |||||+.+|+
T Consensus       182 iaRALv~~P~  191 (257)
T COG1119         182 IARALVKDPE  191 (257)
T ss_pred             HHHHHhcCCC
Confidence            9999999996

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.76  E-value=7.8e-20  Score=127.24  Aligned_cols=88  Identities=18%  Similarity=0.162  Sum_probs=65.6

Q ss_pred             EEEeCe-eeecCC--eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          6 MVLDGF-KSYGTR--VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~~--~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      |+++|+ +.|++.  .++.+++     +++++|+||||||||||+++|+|+++|++|++.+++ .++....  ....++.
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g-~~~~~~~--~~~~~~~   77 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDG-VDLRDLD--LESLRKN   77 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECC-EEhhhcC--HHHHHhh
Confidence            468899 888765  6777777     789999999999999999999999999999999887 3321111  1113457


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQI  106 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i  106 (159)
                      ++++||++         .+++ .|+.+|+
T Consensus        78 i~~~~~~~---------~~~~-~t~~e~l   96 (171)
T cd03228          78 IAYVPQDP---------FLFS-GTIRENI   96 (171)
T ss_pred             EEEEcCCc---------hhcc-chHHHHh
Confidence            99999885         2333 3666665

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.75  E-value=6.8e-20  Score=133.12  Aligned_cols=120  Identities=15%  Similarity=0.092  Sum_probs=83.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC----cccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI----QVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTI  100 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~----~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~  100 (159)
                      +++++|+||||||||||+++|+|+++|    ++|+|.++| +++...    ...++.+++++|++..       .+++.+
T Consensus        12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g-~~~~~~----~~~~~~i~~~~q~~~~-------~~~~~~   79 (230)
T TIGR02770        12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG-RPLLPL----SIRGRHIATIMQNPRT-------AFNPLF   79 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECC-Eechhh----hhhhheeEEEecCchh-------hcCccc
Confidence            789999999999999999999999998    899999988 343211    1123579999998520       133456


Q ss_pred             EEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc---c---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        101 VICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN---V---NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       101 tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~---~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      |+.+++.+... .... ......+++.++++.+++.   .   ..+..+|+ |+   ++|++++.+|+
T Consensus        80 t~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  145 (230)
T TIGR02770        80 TMGNHAIETLR-SLGK-LSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPP  145 (230)
T ss_pred             CHHHHHHHHHH-HcCc-cHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence            77666643211 0100 0112235688899999996   2   34567777 33   99999999985

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.75  E-value=5.7e-20  Score=150.68  Aligned_cols=133  Identities=13%  Similarity=0.116  Sum_probs=98.0

Q ss_pred             EeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc--ccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          8 LDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ--VKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         8 l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      ++|+ +.|+++.+|++++     |++++|+|||||||||||++|+|...++  +|+|.++| +++..      ..++.++
T Consensus        71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG-~~~~~------~~~~~i~  143 (659)
T PLN03211         71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN-RKPTK------QILKRTG  143 (659)
T ss_pred             cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECC-EECch------hhccceE
Confidence            4456 6788888999998     6899999999999999999999998875  89999988 32211      1235699


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC---EEeCHHHHHHHHHhcCccc--C------CCeeEEe-Ch
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING---SSVNPKRVSDLFSSVNLNV--N------NPHFLIM-QG  147 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~--~------~~~~l~~-q~  147 (159)
                      +++|++         .+++.+||.|++.+...  .+...   .....+++.++++.++|..  +      ....+|+ |+
T Consensus       144 yv~Q~~---------~l~~~lTV~E~l~~~a~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGer  212 (659)
T PLN03211        144 FVTQDD---------ILYPHLTVRETLVFCSL--LRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGER  212 (659)
T ss_pred             EECccc---------ccCCcCCHHHHHHHHHH--hCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhh
Confidence            999985         46778899999987432  11111   1122345788999999964  1      2346777 43


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         +||++|+.+|+
T Consensus       213 qRv~ia~aL~~~P~  226 (659)
T PLN03211        213 KRVSIAHEMLINPS  226 (659)
T ss_pred             hHHHHHHHHHhCCC
Confidence               99999999986

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.75  E-value=1.7e-19  Score=146.38  Aligned_cols=133  Identities=12%  Similarity=0.123  Sum_probs=97.6

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ .+|++   +.+|++++     |+.++|+|+||||||||+++|+|+++|.+|+++++| .++.....  ...+
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g-~~i~~~~~--~~~~  413 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG-VDLRQLDP--AELR  413 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC-EEHHhcCH--HHHH
Confidence            5899999 89964   45788887     799999999999999999999999999999999988 34322111  1135


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~  141 (159)
                      +.+++++|++         .+|+ -|+++|+.++..        ....+++.+.++.+++..              +...
T Consensus       414 ~~i~~~~Q~~---------~lf~-~Ti~~Ni~~~~~--------~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~  475 (576)
T TIGR02204       414 ARMALVPQDP---------VLFA-ASVMENIRYGRP--------DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGV  475 (576)
T ss_pred             HhceEEccCC---------cccc-ccHHHHHhcCCC--------CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCC
Confidence            6799999996         2444 489999987531        123456767777666532              1234


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      .+|+ |+   ++||++..+|+
T Consensus       476 ~LSgGq~Qrl~laRal~~~~~  496 (576)
T TIGR02204       476 TLSGGQRQRIAIARAILKDAP  496 (576)
T ss_pred             cCCHHHHHHHHHHHHHHhCCC
Confidence            5666 33   99999999886

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.75  E-value=8.6e-20  Score=129.24  Aligned_cols=88  Identities=15%  Similarity=0.219  Sum_probs=68.9

Q ss_pred             EEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhHHHHHHhhCCCc
Q psy17514          5 SMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTLQELIYKNGQAG   72 (159)
Q Consensus         5 ~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~~~~~~~~~~~~   72 (159)
                      .|+++|+ +.|++    ..++++++     +++++|+|||||||||||++|+|+.  +|++|++.+++ +++.      .
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g-~~~~------~   75 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILING-RPLD------K   75 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECC-EehH------H
Confidence            5889999 99974    56888887     6899999999999999999999986  47899999887 3332      1


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEc
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISI  108 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~  108 (159)
                      ..++.+++++|.+         .+++.+|+.+|+.+
T Consensus        76 ~~~~~i~~~~q~~---------~~~~~~tv~~~l~~  102 (192)
T cd03232          76 NFQRSTGYVEQQD---------VHSPNLTVREALRF  102 (192)
T ss_pred             HhhhceEEecccC---------ccccCCcHHHHHHH
Confidence            1345799999875         35566677777654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.75  E-value=1.2e-20  Score=143.36  Aligned_cols=113  Identities=15%  Similarity=0.180  Sum_probs=83.9

Q ss_pred             EEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcC
Q psy17514         30 ITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIP  109 (159)
Q Consensus        30 liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~  109 (159)
                      |+|||||||||||++|+|+++|++|+|.++| +++..    ....++.++|+||++         .+++++|+.+|+.++
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g-~~i~~----~~~~~~~i~~v~q~~---------~l~~~~tv~enl~~~   66 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDG-EDVTN----VPPHLRHINMVFQSY---------ALFPHMTVEENVAFG   66 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECC-EECCC----CCHHHCCEEEEecCc---------cccCCCcHHHHHHHH
Confidence            6899999999999999999999999999987 33211    011245799999985         578889999999876


Q ss_pred             CceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        110 SNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      ..  +.........+++.++++.++|..   ..+..+|+ |+   +|||+|+.+|+
T Consensus        67 ~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~  120 (325)
T TIGR01187        67 LK--MRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK  120 (325)
T ss_pred             Hh--hcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence            32  110111122356788999999965   46778888 33   99999999986

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.75  E-value=2.1e-19  Score=157.38  Aligned_cols=133  Identities=14%  Similarity=0.134  Sum_probs=102.4

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC------------------------
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI------------------------   51 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~------------------------   51 (159)
                      .|+++|+ .+|.+   .++|++++     |+.++|+||||||||||++.|.+++.|                        
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence            4899999 99963   46889888     789999999999999999999999998                        


Q ss_pred             ------------------------------cccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEE
Q psy17514         52 ------------------------------QVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIV  101 (159)
Q Consensus        52 ------------------------------~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~t  101 (159)
                                                    ++|+|.++| .++...+.  ...+..|++|+|+|         .+|+ .|
T Consensus      1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG-~di~~~~~--~~lR~~i~~V~Qep---------~LF~-gT 1311 (1466)
T PTZ00265       1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG-VDICDYNL--KDLRNLFSIVSQEP---------MLFN-MS 1311 (1466)
T ss_pred             ccccccccccccccccccccccccccccCCCCCeEEECC-EEHHhCCH--HHHHhhccEeCCCC---------cccc-cc
Confidence                                          589999988 45432111  22578899999997         3454 69


Q ss_pred             EEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        102 ICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       102 v~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      +++||.++..        ....+++.++++..++..              +.-..||+ |+   +|||||..+|+
T Consensus      1312 IreNI~~g~~--------~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ 1378 (1466)
T PTZ00265       1312 IYENIKFGKE--------DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPK 1378 (1466)
T ss_pred             HHHHHhcCCC--------CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            9999998732        235577888888777643              23456777 43   99999999996

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.75  E-value=3e-19  Score=131.75  Aligned_cols=132  Identities=10%  Similarity=0.124  Sum_probs=89.9

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ +.|+.  ..++++++     +++++|+|+||||||||+++|+|+++|.+|++.+++ .++... . ....+.
T Consensus        19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g-~~i~~~-~-~~~~~~   95 (257)
T cd03288          19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDG-IDISKL-P-LHTLRS   95 (257)
T ss_pred             eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECC-EEhhhC-C-HHHHhh
Confidence            5899999 89975  46788887     789999999999999999999999999999999987 333211 1 111356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcC-----------ccc---CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVN-----------LNV---NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~---~~~~~  142 (159)
                      .+++++|++         .+++ .|+.+|+.....         .....+.++++.++           ++.   ..+..
T Consensus        96 ~i~~v~q~~---------~l~~-~tv~~nl~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~  156 (257)
T cd03288          96 RLSIILQDP---------ILFS-GSIRFNLDPECK---------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGEN  156 (257)
T ss_pred             hEEEECCCC---------cccc-cHHHHhcCcCCC---------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCc
Confidence            799999985         2444 377777653211         01223333333333           322   22345


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |.   ++||+++.+|+
T Consensus       157 LS~G~~qrl~laral~~~p~  176 (257)
T cd03288         157 FSVGQRQLFCLARAFVRKSS  176 (257)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            666 32   99999999986

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>KOG0964|consensus

Probab=99.75  E-value=1.6e-17  Score=135.84  Aligned_cols=150  Identities=30%  Similarity=0.559  Sum_probs=123.2

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |++..+.|+||++|.+.+++.++|+..++|||.||||||+++.||.+.+...-.+.+-.....+++.++......+.|.+
T Consensus         1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk~E~R~gLlHEGsG~~V~sA~VEI   80 (1200)
T KOG0964|consen    1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLKREERQGLLHEGSGAMVMSASVEI   80 (1200)
T ss_pred             CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcCHHHHhhhhhcCCCcceEEEEEEE
Confidence            88999999999999999999999999999999999999999999999987664455444445566666655667899999


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcC
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNM  155 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~  155 (159)
                      +|.+++..+.    .--.+.++++.+..-.. .|.++++-+....+..+|+..|+.-.+|++.+.||.|..+..+
T Consensus        81 vF~nsdnr~~----~~k~Ev~lrRtVGlKKD-eY~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~QGkI~~La~a  150 (1200)
T KOG0964|consen   81 VFDNSDNRLP----RGKSEVSLRRTVGLKKD-EYFLDNKMVTKGEVVNLLESAGFSRSNPYYIVPQGKINELANA  150 (1200)
T ss_pred             EEeCcccccC----CCCCeEEEEEeecccch-hhhcccccccHHHHHHHHHhcCcccCCCceEeechhhHHhhcC
Confidence            9999876531    12246788888876533 6888999899999999999999999999999999988776654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.75  E-value=1.9e-18  Score=125.64  Aligned_cols=103  Identities=18%  Similarity=0.242  Sum_probs=83.4

Q ss_pred             EEEEeCe-eeecC---------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC
Q psy17514          5 SMVLDGF-KSYGT---------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG   69 (159)
Q Consensus         5 ~l~l~~~-~~~~~---------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~   69 (159)
                      .|+++|+ +.|..         ..+++++|     +++.+|+|+|||||||+-++|.+++.|++|+|.+.| +++..   
T Consensus         4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g-~~i~~---   79 (268)
T COG4608           4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG-KDITK---   79 (268)
T ss_pred             eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC-cchhh---
Confidence            4899999 88853         26778887     689999999999999999999999999999999987 22110   


Q ss_pred             CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe
Q psy17514         70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM  145 (159)
Q Consensus        70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~  145 (159)
                                                    ++                 +....+++.++|+.+|+..    ++|.++|+
T Consensus        80 ------------------------------~~-----------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG  112 (268)
T COG4608          80 ------------------------------LS-----------------KEERRERVLELLEKVGLPEEFLYRYPHELSG  112 (268)
T ss_pred             ------------------------------cc-----------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence                                          01                 1223467999999999876    68999999


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |.   .|||||+.+|+
T Consensus       113 GQrQRi~IARALal~P~  129 (268)
T COG4608         113 GQRQRIGIARALALNPK  129 (268)
T ss_pred             hhhhhHHHHHHHhhCCc
Confidence             44   99999999996

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.75  E-value=2.4e-19  Score=145.37  Aligned_cols=133  Identities=11%  Similarity=0.142  Sum_probs=97.5

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++++ .+|+.  ..+|++++     |+.++|+||||||||||+++|+|+++|++|+|.++| .++....  ....+.
T Consensus       313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g-~~~~~~~--~~~~~~  389 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHD-IPLTKLQ--LDSWRS  389 (569)
T ss_pred             cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECC-EEHhhCC--HHHHHh
Confidence            4788999 88864  45788887     789999999999999999999999999999999987 3432111  112467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .+++++|++         .+++ -|+++|+.++..        ....+++.+.++.+++..              +....
T Consensus       390 ~i~~v~q~~---------~lf~-~ti~~Ni~~~~~--------~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~  451 (569)
T PRK10789        390 RLAVVSQTP---------FLFS-DTVANNIALGRP--------DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVM  451 (569)
T ss_pred             heEEEccCC---------eecc-ccHHHHHhcCCC--------CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCc
Confidence            799999986         3555 399999987521        124456666666665532              22345


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++||++..+|+
T Consensus       452 LSgGq~qRi~lARall~~~~  471 (569)
T PRK10789        452 LSGGQKQRISIARALLLNAE  471 (569)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            666 33   99999999996

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.75  E-value=2.3e-19  Score=144.83  Aligned_cols=133  Identities=14%  Similarity=0.131  Sum_probs=95.3

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .++++|+ .+|++  ..++++++     |+.++|+||||||||||+++|+|+++|++|++.++| .++...+  ....++
T Consensus       316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g-~~i~~~~--~~~~~~  392 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG-ADLKQWD--RETFGK  392 (544)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EehhhCC--HHHHhh
Confidence            4899999 99964  46788887     789999999999999999999999999999999987 3432211  112467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc-----------cc---CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL-----------NV---NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~---~~~~~  142 (159)
                      .+++++|++         .+++. |+++|+.+...        ....+++.+.++..++           +.   +....
T Consensus       393 ~i~~v~q~~---------~lf~~-ti~~Ni~~~~~--------~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~  454 (544)
T TIGR01842       393 HIGYLPQDV---------ELFPG-TVAENIARFGE--------NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGAT  454 (544)
T ss_pred             heEEecCCc---------ccccc-cHHHHHhccCC--------CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCC
Confidence            899999986         35554 89999875421        1233444444444333           22   23456


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++||++..+|+
T Consensus       455 LSgGq~qrl~lARall~~~~  474 (544)
T TIGR01842       455 LSGGQRQRIALARALYGDPK  474 (544)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            777 33   99999999996

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.75  E-value=7.4e-20  Score=128.56  Aligned_cols=92  Identities=11%  Similarity=0.225  Sum_probs=66.8

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|    ++++++     +++++|+||||||||||+++|+|+++|++|++.+++ .++..... ....++.+
T Consensus         4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~-~~~~~~~i   77 (182)
T cd03215           4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG-KPVTRRSP-RDAIRAGI   77 (182)
T ss_pred             EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCccCH-HHHHhCCe
Confidence            4889999 888    677776     789999999999999999999999999999999887 33211000 01124579


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEc
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISI  108 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~  108 (159)
                      ++++|++..      ..+++.+|+.+|+.+
T Consensus        78 ~~~~q~~~~------~~~~~~~t~~e~l~~  101 (182)
T cd03215          78 AYVPEDRKR------EGLVLDLSVAENIAL  101 (182)
T ss_pred             EEecCCccc------CcccCCCcHHHHHHH
Confidence            999987420      024555677777654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.74  E-value=2.9e-19  Score=145.34  Aligned_cols=133  Identities=13%  Similarity=0.154  Sum_probs=95.2

Q ss_pred             EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ .+|++ ..++.+++     |+.++|+||||||||||+++|+|+.+|++|+|.++| .++...+  ....++.
T Consensus       334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g-~~~~~~~--~~~~~~~  410 (585)
T TIGR01192       334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG-IDINTVT--RESLRKS  410 (585)
T ss_pred             eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC-EEhhhCC--HHHHHhh
Confidence            4899999 99975 55788887     799999999999999999999999999999999987 3332111  1124678


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc-----------cc---CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL-----------NV---NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~---~~~~~l  143 (159)
                      +++++|++         .+++ .|+++|+.++..        ....+++.+.++.+++           +.   +....+
T Consensus       411 i~~v~q~~---------~lf~-~ti~~Ni~~~~~--------~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~L  472 (585)
T TIGR01192       411 IATVFQDA---------GLFN-RSIRENIRLGRE--------GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL  472 (585)
T ss_pred             eEEEccCC---------ccCc-ccHHHHHhcCCC--------CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCC
Confidence            99999996         3444 589999987531        1123444444443332           21   334567


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   ++||++..+|+
T Consensus       473 SgGq~qrl~lARall~~p~  491 (585)
T TIGR01192       473 SGGERQRLAIARAILKNAP  491 (585)
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            76 33   99999999986

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.74  E-value=8.9e-19  Score=144.02  Aligned_cols=129  Identities=15%  Similarity=0.192  Sum_probs=96.4

Q ss_pred             EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ +.|+ +..++++++     |++++|+||||||||||+++|+|+.+++.|++..++              +..
T Consensus       451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--------------~~~  516 (659)
T TIGR00954       451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--------------KGK  516 (659)
T ss_pred             eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--------------CCc
Confidence            4889999 8885 557888887     789999999999999999999999999999886431              356


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--CC----------CeeEEe
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--NN----------PHFLIM  145 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~----------~~~l~~  145 (159)
                      +++++|++         .+++. |+++|+.++.... .........+++.++++.+++..  +.          +..+|+
T Consensus       517 i~~v~Q~~---------~l~~~-tv~eni~~~~~~~-~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSg  585 (659)
T TIGR00954       517 LFYVPQRP---------YMTLG-TLRDQIIYPDSSE-DMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSG  585 (659)
T ss_pred             EEEECCCC---------CCCCc-CHHHHHhcCCChh-hhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCH
Confidence            99999986         24554 8999998764210 00011223567788899998864  22          246777


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   +|||+++.+|+
T Consensus       586 GqkQRl~iARal~~~p~  602 (659)
T TIGR00954       586 GEKQRIAMARLFYHKPQ  602 (659)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence             33   99999999996

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=8.2e-20  Score=125.83  Aligned_cols=134  Identities=16%  Similarity=0.167  Sum_probs=90.7

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      ++.+|+ ..-+++.++.+++     +|++.|.|||||||||||++|+|++.|++|+|++.+ ..+..   ........+-
T Consensus         3 L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~-~~i~~---~~~~~~~~l~   78 (209)
T COG4133           3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG-EPIQN---VRESYHQALL   78 (209)
T ss_pred             chhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecC-CCCcc---chhhHHHHHH
Confidence            577788 5566777777777     789999999999999999999999999999999986 22110   0000112233


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--CCCe-eEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--NNPH-FLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~-~l~~-q~---~ia~~  152 (159)
                      |+--.+         .+-+++|+.||+.|-..    +.+. .....+.+.++.++|..  +-|+ +||. |+   ++||.
T Consensus        79 yLGH~~---------giK~eLTa~ENL~F~~~----~~~~-~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL  144 (209)
T COG4133          79 YLGHQP---------GIKTELTALENLHFWQR----FHGS-GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARL  144 (209)
T ss_pred             Hhhccc---------cccchhhHHHHHHHHHH----HhCC-CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHH
Confidence            332222         24457899999988422    1222 23467888999999976  5565 4544 44   88888


Q ss_pred             hcCCC
Q psy17514        153 LNMKP  157 (159)
Q Consensus       153 l~~~p  157 (159)
                      .+..+
T Consensus       145 ~ls~~  149 (209)
T COG4133         145 WLSPA  149 (209)
T ss_pred             HcCCC
Confidence            76543

>KOG0055|consensus

Probab=99.74  E-value=3.9e-19  Score=149.82  Aligned_cols=133  Identities=17%  Similarity=0.174  Sum_probs=105.4

Q ss_pred             EEEEeCe-eeecCC---eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGTR---VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~~---~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .++++|+ .+|+.+   +++.+++     |+.++|||||||||||++.+|-..+.|++|.|.++| .++...+  -.+.|
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg-~dik~ln--l~~LR 1063 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDG-VDIKDLN--LKWLR 1063 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC-cccccCC--HHHHH
Confidence            4899999 999865   4677777     789999999999999999999999999999999998 4543222  12358


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~  141 (159)
                      ++++.|.|+|         .+|. -|++|||.+|..       + ..+.++.+.++..+...              +.-.
T Consensus      1064 ~~i~lVsQEP---------~LF~-~TIrENI~YG~~-------~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1064 KQIGLVSQEP---------VLFN-GTIRENIAYGSE-------E-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred             HhcceeccCc---------hhhc-ccHHHHHhccCC-------C-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence            8999999997         3554 499999998722       2 56788888888776532              3456


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      +||+ |+   +||||+..+|+
T Consensus      1126 QLSGGQKQRIAIARAilRnPk 1146 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPK 1146 (1228)
T ss_pred             cCCchHHHHHHHHHHHHcCCC
Confidence            7888 44   99999999997

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.74  E-value=2.1e-19  Score=148.73  Aligned_cols=133  Identities=15%  Similarity=0.155  Sum_probs=98.1

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ .+|++  ..+|++++     |+.++|+|+||||||||+++|+|++.|++|+|.++| .++...+.  ...++
T Consensus       455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg-~~i~~~~~--~~~r~  531 (694)
T TIGR01846       455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG-VDLAIADP--AWLRR  531 (694)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EehhhCCH--HHHHH
Confidence            5899999 99953  45788887     789999999999999999999999999999999998 34322111  12467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++++|++         .+++ .|+++|+.++..        ....+++.++++.+++..              +....
T Consensus       532 ~i~~v~q~~---------~lf~-~ti~eNi~~~~~--------~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~  593 (694)
T TIGR01846       532 QMGVVLQEN---------VLFS-RSIRDNIALCNP--------GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGAN  593 (694)
T ss_pred             hCeEEccCC---------eehh-hhHHHHHhcCCC--------CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCC
Confidence            899999986         3444 499999987521        123456666666655432              23345


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++||++..+|+
T Consensus       594 LSgGq~qri~lARall~~~~  613 (694)
T TIGR01846       594 LSGGQRQRIAIARALVGNPR  613 (694)
T ss_pred             CCHHHHHHHHHHHHHHhCCC
Confidence            666 33   99999999986

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.74  E-value=1.5e-19  Score=144.34  Aligned_cols=143  Identities=17%  Similarity=0.095  Sum_probs=94.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-cccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-QVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ +.|++..+|++++     |++++|+||||||||||+++|+|+.++ ++|+|.++| +++.. .......++.
T Consensus       260 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g-~~~~~-~~~~~~~~~~  337 (490)
T PRK10938        260 RIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFG-RRRGS-GETIWDIKKH  337 (490)
T ss_pred             eEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEec-ccCCC-CCCHHHHHhh
Confidence            4899999 9998878899888     789999999999999999999998765 689999887 22210 0000112457


Q ss_pred             EEEEEEcCCCCCCCCCccCCC--eEEEEEEEEcCCceEEE-ECC-EEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch-
Q psy17514         78 VTLTFDNSDKKNCPIGYENDN--TIVICRQISIPSNTRYM-ING-SSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG-  147 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~--~~tv~~~i~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~-  147 (159)
                      |++++|++.         ++.  ..++.+++..+...... ... .....+++.++++.++|..    ..+..||+ |+ 
T Consensus       338 i~~v~q~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q  408 (490)
T PRK10938        338 IGYVSSSLH---------LDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQR  408 (490)
T ss_pred             ceEECHHHH---------hhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHH
Confidence            999998742         111  12333332221100000 000 1112356788999999964    34577777 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        ++|++++.+|+
T Consensus       409 rv~la~al~~~p~  421 (490)
T PRK10938        409 LALIVRALVKHPT  421 (490)
T ss_pred             HHHHHHHHhcCCC
Confidence              99999999986

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.73  E-value=2e-19  Score=128.09  Aligned_cols=78  Identities=17%  Similarity=0.261  Sum_probs=59.6

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHH--hCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFV--LGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~--~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      |+++|+ +.|++..++.+++     +++++|+|+||||||||+++|+|+  ..|++|++.++| +++... ......+..
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g-~~~~~~-~~~~~~~~~   78 (200)
T cd03217           1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG-EDITDL-PPEERARLG   78 (200)
T ss_pred             CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECC-EECCcC-CHHHHhhCc
Confidence            468899 8998878889888     689999999999999999999999  478999999887 322110 000112345


Q ss_pred             EEEEEEcC
Q psy17514         78 VTLTFDNS   85 (159)
Q Consensus        78 i~~v~q~~   85 (159)
                      +++++|.+
T Consensus        79 i~~v~q~~   86 (200)
T cd03217          79 IFLAFQYP   86 (200)
T ss_pred             EEEeecCh
Confidence            99999875

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.73  E-value=6.5e-19  Score=129.74  Aligned_cols=132  Identities=14%  Similarity=0.114  Sum_probs=85.7

Q ss_pred             eCe-eeecCC-eeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchh-----------hhhHHHHHHhhCCC
Q psy17514          9 DGF-KSYGTR-VEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVR-----------ANTLQELIYKNGQA   71 (159)
Q Consensus         9 ~~~-~~~~~~-~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~-----------~~~~~~~~~~~~~~   71 (159)
                      .++ ++|+.. .++++++    +++++|+|||||||||||++|+|+++|++|+|+           +++ .++.......
T Consensus         4 ~~~~~~y~~~~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g-~~~~~~~~~~   82 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRG-SELQNYFTKL   82 (255)
T ss_pred             cCcceeecCcchhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccC-chhhhhhHHh
Confidence            367 888764 4677776    689999999999999999999999999999995           444 2221111100


Q ss_pred             ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch
Q psy17514         72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG  147 (159)
Q Consensus        72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~  147 (159)
                      ......+++++|..         ..++. ++.+++.....       .......+.++++.++|..   ..+..+|+ |+
T Consensus        83 ~~~~~~i~~~~~~~---------~~~~~-~~~~~i~~~l~-------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  145 (255)
T cd03236          83 LEGDVKVIVKPQYV---------DLIPK-AVKGKVGELLK-------KKDERGKLDELVDQLELRHVLDRNIDQLSGGEL  145 (255)
T ss_pred             hhcccceeeecchh---------ccCch-HHHHHHHHHhc-------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence            00112467777763         23332 34444333211       1112456788999999975   45667777 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         ++|++++.+|+
T Consensus       146 qrv~laral~~~p~  159 (255)
T cd03236         146 QRVAIAAALARDAD  159 (255)
T ss_pred             HHHHHHHHHHhCCC
Confidence               99999999885

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.73  E-value=8.9e-19  Score=141.51  Aligned_cols=129  Identities=14%  Similarity=0.132  Sum_probs=95.3

Q ss_pred             EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ .+|++ ..+|++++     |+.++|+||||||||||+++|+|+++|++|+|.++| .++...  .....++.
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g-~~~~~~--~~~~~~~~  398 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG-KPVTAE--QPEDYRKL  398 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EECCCC--CHHHHhhh
Confidence            5899999 99964 45888888     789999999999999999999999999999999987 332110  11124678


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccC--C------CeeEEe-Ch-
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVN--N------PHFLIM-QG-  147 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~------~~~l~~-q~-  147 (159)
                      +++++|++         .+|+ .|+.+|   +         .....+++.+.++.+++...  .      ...+|+ |+ 
T Consensus       399 i~~v~q~~---------~lf~-~ti~~n---~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~q  456 (547)
T PRK10522        399 FSAVFTDF---------HLFD-QLLGPE---G---------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKK  456 (547)
T ss_pred             eEEEecCh---------hHHH-Hhhccc---c---------CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHH
Confidence            99999986         2343 356555   1         12344677888888888652  1      235776 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        ++||++..+|+
T Consensus       457 Rl~lARal~~~~~  469 (547)
T PRK10522        457 RLALLLALAEERD  469 (547)
T ss_pred             HHHHHHHHhcCCC
Confidence              99999999986

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.73  E-value=1.1e-19  Score=133.52  Aligned_cols=121  Identities=13%  Similarity=0.121  Sum_probs=83.1

Q ss_pred             eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCC
Q psy17514         19 EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIG   93 (159)
Q Consensus        19 ~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~   93 (159)
                      +|.+++     |++++|+||||||||||+++|+|+.++ +|++.++| +++.. .. ....++.+++++|++        
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g-~~i~~-~~-~~~~~~~i~~v~q~~--------   78 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAG-QPLEA-WS-AAELARHRAYLSQQQ--------   78 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECC-EecCc-CC-HHHHhhheEEecccC--------
Confidence            456665     789999999999999999999999864 89999887 33211 00 011234689999875        


Q ss_pred             ccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcC
Q psy17514         94 YENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNM  155 (159)
Q Consensus        94 ~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~  155 (159)
                       .+++.+|+.+|+.+...  .. .......+++.++++.++|..   ..+..+|+ |+   +||++++.
T Consensus        79 -~~~~~~tv~~nl~~~~~--~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~  143 (248)
T PRK03695         79 -TPPFAMPVFQYLTLHQP--DK-TRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQ  143 (248)
T ss_pred             -ccCCCccHHHHHHhcCc--cC-CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence             24455788888776421  11 111122456788999999965   34667776 33   99999986

>PLN03232 ABC transporter C family member; Provisional

Probab=99.73  E-value=5.6e-19  Score=155.44  Aligned_cols=132  Identities=11%  Similarity=0.136  Sum_probs=101.3

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ .+|.+  ..+|++++     |+.++|+|+||||||||+++|.+++.|++|+|.++| .++...+.  ...|+
T Consensus      1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG-~di~~i~~--~~lR~ 1310 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDD-CDVAKFGL--TDLRR 1310 (1495)
T ss_pred             cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECC-EEhhhCCH--HHHHh
Confidence            4899999 99953  46899998     789999999999999999999999999999999998 45432111  12477


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      +|++++|+|         .+|+. |+++|+..+.         ...++++.++++.+++.+              +.-..
T Consensus      1311 ~i~iVpQdp---------~LF~g-TIr~NL~~~~---------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1371 (1495)
T PLN03232       1311 VLSIIPQSP---------VLFSG-TVRFNIDPFS---------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371 (1495)
T ss_pred             hcEEECCCC---------eeeCc-cHHHHcCCCC---------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCC
Confidence            899999997         35654 9999997642         234567777887776643              12235


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   +||||+..+|+
T Consensus      1372 LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232       1372 FSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred             CCHHHHHHHHHHHHHHhCCC
Confidence            666 44   99999999986

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.73  E-value=1.3e-19  Score=144.93  Aligned_cols=141  Identities=13%  Similarity=0.196  Sum_probs=94.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.     ++++++     |++++|+||||||||||+++|+|+++|++|+|+++| +++.. .......++.|
T Consensus       257 ~l~~~~l~~~-----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g-~~i~~-~~~~~~~~~~i  329 (501)
T PRK10762        257 RLKVDNLSGP-----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG-HEVVT-RSPQDGLANGI  329 (501)
T ss_pred             EEEEeCcccC-----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECC-EECCC-CCHHHHHHCCC
Confidence            4778887 42     355665     789999999999999999999999999999999887 22210 00001123569


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE----ECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch--
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM----INGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG--  147 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~--  147 (159)
                      +|++|++..      ..+++.+|+.+|+.++....+.    ........+++.++++.++|. .   ..+..||+ |+  
T Consensus       330 ~~v~q~~~~------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqr  403 (501)
T PRK10762        330 VYISEDRKR------DGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK  403 (501)
T ss_pred             EEecCcccc------CCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHH
Confidence            999998520      0255667898888764210010    001112235678899999994 2   45677777 33  


Q ss_pred             -hHhHhhcCCCC
Q psy17514        148 -RVTKVLNMKPH  158 (159)
Q Consensus       148 -~ia~~l~~~p~  158 (159)
                       +||++++.+|+
T Consensus       404 v~lA~al~~~p~  415 (501)
T PRK10762        404 VAIARGLMTRPK  415 (501)
T ss_pred             HHHHHHHhhCCC
Confidence             99999999985

>PRK13409 putative ATPase RIL; Provisional

Probab=99.73  E-value=2e-18  Score=140.07  Aligned_cols=121  Identities=16%  Similarity=0.137  Sum_probs=93.1

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++.. |.+++     |++++|+||||||||||+++|+|+++|++|+|.++                ..+
T Consensus       340 ~l~~~~ls~~~~~~~-l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----------------~~i  402 (590)
T PRK13409        340 LVEYPDLTKKLGDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----------------LKI  402 (590)
T ss_pred             EEEEcceEEEECCEE-EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----------------eeE
Confidence            4899999 8897653 66655     78999999999999999999999999999988752                158


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +|++|++         .+++++||.+++.+... .+   +   ....+.++++.++|..   ..+..||+ |+   +||+
T Consensus       403 ~y~~Q~~---------~~~~~~tv~e~l~~~~~-~~---~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAr  466 (590)
T PRK13409        403 SYKPQYI---------KPDYDGTVEDLLRSITD-DL---G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAA  466 (590)
T ss_pred             EEecccc---------cCCCCCcHHHHHHHHhh-hc---C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHH
Confidence            9999985         24456789888765421 11   1   1235678899999965   56778888 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       467 aL~~~p~  473 (590)
T PRK13409        467 CLSRDAD  473 (590)
T ss_pred             HHhcCCC
Confidence            9999986

>PLN03130 ABC transporter C family member; Provisional

Probab=99.73  E-value=5.8e-19  Score=155.85  Aligned_cols=132  Identities=11%  Similarity=0.111  Sum_probs=101.3

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ .+|.+  ..+|++++     |+.++|+|++|||||||+++|.+++.|++|+|.++| .++...+.  ...|+
T Consensus      1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG-~dI~~i~l--~~LR~ 1313 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDG-CDISKFGL--MDLRK 1313 (1622)
T ss_pred             cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECC-EecccCCH--HHHHh
Confidence            4899999 99964  36899998     789999999999999999999999999999999998 44422111  12467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      +|++|+|+|         .+|.. |+++|+..+.         ...++++.++++.+++..              +....
T Consensus      1314 ~IsiVpQdp---------~LF~G-TIreNLd~~~---------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~n 1374 (1622)
T PLN03130       1314 VLGIIPQAP---------VLFSG-TVRFNLDPFN---------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374 (1622)
T ss_pred             ccEEECCCC---------ccccc-cHHHHhCcCC---------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCC
Confidence            899999997         35654 9999997642         234567788888776643              12245


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   +||||+..+|+
T Consensus      1375 LSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130       1375 FSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred             CCHHHHHHHHHHHHHHcCCC
Confidence            666 44   99999999986

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.73  E-value=1.7e-16  Score=114.46  Aligned_cols=137  Identities=35%  Similarity=0.543  Sum_probs=93.3

Q ss_pred             eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chhhhhHHHHHHh-hCCCceeEEEEE
Q psy17514          2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK-QVRANTLQELIYK-NGQAGVTKASVT   79 (159)
Q Consensus         2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~~~~~~~~~~~-~~~~~~~~~~i~   79 (159)
                      |+..|++.||++|.+.....++++.+++|+||||+||||+++||..++....+ .++....+++++. ........+.|.
T Consensus         1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~   80 (220)
T PF02463_consen    1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVE   80 (220)
T ss_dssp             EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEE
T ss_pred             CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Confidence            57889999999997555556788999999999999999999999888764322 4555544455443 222233567888


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEe
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIM  145 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~  145 (159)
                      ..|++++... .   ...+...+.+.+.......+.+++.....+.+.+.+..+.+...   .+|+
T Consensus        81 ~~~~~~~~~~-~---~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~---~lSg  139 (220)
T PF02463_consen   81 LIFDNSDEEF-E---LDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE---FLSG  139 (220)
T ss_dssp             EEEECTTEES-S---SSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT---GS-H
T ss_pred             cccccccccc-c---cccccccccccccccccccccccccccccccccccccccccccc---cccc
Confidence            8887754220 0   12345677777777766678999999988889999988887754   5555

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.73  E-value=1.1e-18  Score=152.85  Aligned_cols=93  Identities=17%  Similarity=0.109  Sum_probs=73.4

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ ++|++   ..+|++++     |++++|+||||||||||+++|+|++.|++|+|.+++-.++... . ..+.+
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~-~-~~~lr  459 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI-N-LKWWR  459 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC-C-HHHHH
Confidence            5899999 99975   35888888     7899999999999999999999999999999999431333211 1 12246


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcC
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIP  109 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~  109 (159)
                      +.|++|+|++         .+|+ .|+.+|+.++
T Consensus       460 ~~Ig~V~Q~~---------~LF~-~TI~eNI~~g  483 (1466)
T PTZ00265        460 SKIGVVSQDP---------LLFS-NSIKNNIKYS  483 (1466)
T ss_pred             HhccEecccc---------cchh-ccHHHHHHhc
Confidence            7899999986         3565 4999999886

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=2.5e-18  Score=140.90  Aligned_cols=125  Identities=10%  Similarity=0.136  Sum_probs=91.9

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|+++.+|.+++     |++++|+|||||||||||++|+|+++|++|+|.+.+              ...|
T Consensus       312 ~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~i  377 (638)
T PRK10636        312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK--------------GIKL  377 (638)
T ss_pred             eEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC--------------CEEE
Confidence            4899999 9998888899888     789999999999999999999999999999998743              1368


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~ia  150 (159)
                      +|++|.+..       .+.+..++.+++..     .   .......++.++++.+++..    ..+..||+ |+   ++|
T Consensus       378 gy~~Q~~~~-------~l~~~~~~~~~~~~-----~---~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La  442 (638)
T PRK10636        378 GYFAQHQLE-------FLRADESPLQHLAR-----L---APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA  442 (638)
T ss_pred             EEecCcchh-------hCCccchHHHHHHH-----h---CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHH
Confidence            999986311       12233343332210     0   11123467889999999952    35667777 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       443 ~~l~~~p~  450 (638)
T PRK10636        443 LIVWQRPN  450 (638)
T ss_pred             HHHhcCCC
Confidence            99999885

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.72  E-value=2.1e-19  Score=143.78  Aligned_cols=142  Identities=14%  Similarity=0.127  Sum_probs=94.8

Q ss_pred             EEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          6 MVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         6 l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      ++++++. +  ..++++++     |++++|+||||||||||+++|+|+++|++|+|+++| +++.. .......+..+++
T Consensus       258 l~~~~~~-~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i~~  332 (501)
T PRK11288        258 LRLDGLK-G--PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG-KPIDI-RSPRDAIRAGIML  332 (501)
T ss_pred             EEEeccc-c--CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECC-EECCC-CCHHHHHhCCCEE
Confidence            6666662 1  13567776     789999999999999999999999999999999877 22210 0000112457999


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE----ECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch---h
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM----INGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG---R  148 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~---~  148 (159)
                      ++|++..      ..+++.+|+.+|+.++......    ........+++.++++.+++. .   ..+..||+ |+   +
T Consensus       333 ~~q~~~~------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~  406 (501)
T PRK11288        333 CPEDRKA------EGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAI  406 (501)
T ss_pred             cCcCHhh------CCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHH
Confidence            9998520      0256667888888764321100    001111234678899999994 2   45678887 33   9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      ||++++.+|+
T Consensus       407 la~al~~~p~  416 (501)
T PRK11288        407 LGRWLSEDMK  416 (501)
T ss_pred             HHHHHccCCC
Confidence            9999999986

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.72  E-value=1.3e-18  Score=140.83  Aligned_cols=130  Identities=12%  Similarity=0.093  Sum_probs=95.7

Q ss_pred             EEEEeCe-eeecCC-----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCce
Q psy17514          5 SMVLDGF-KSYGTR-----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~~-----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~   73 (159)
                      .|+++|+ .+|++.     .+|++++     |++++|+||||||||||+++|+|+++|++|+|.++| .++....  ...
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g-~~i~~~~--~~~  413 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDG-AAVSADS--RDD  413 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECCCCC--HHH
Confidence            5899999 999752     4788888     789999999999999999999999999999999987 3321100  112


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---------CCCeeEE
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---------NNPHFLI  144 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------~~~~~l~  144 (159)
                      .+..+++++|++         .+|+. |+.+|..           .....+++.++++.+++..         +....+|
T Consensus       414 ~~~~i~~v~q~~---------~lf~~-ti~~n~~-----------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS  472 (555)
T TIGR01194       414 YRDLFSAIFADF---------HLFDD-LIGPDEG-----------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS  472 (555)
T ss_pred             HHhhCcEEccCh---------hhhhh-hhhcccc-----------cchhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence            356799999985         24443 6666631           1234567888899998865         1224577


Q ss_pred             e-Ch---hHhHhhcCCCC
Q psy17514        145 M-QG---RVTKVLNMKPH  158 (159)
Q Consensus       145 ~-q~---~ia~~l~~~p~  158 (159)
                      + |+   +|||++..+|+
T Consensus       473 gGq~qRlalaRall~~~~  490 (555)
T TIGR01194       473 TGQQKRLALICAWLEDRP  490 (555)
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            6 43   99999999986

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.72  E-value=1.3e-18  Score=125.95  Aligned_cols=119  Identities=17%  Similarity=0.126  Sum_probs=82.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR  104 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~  104 (159)
                      |++++|+|+||||||||+++|+|+++|++|+|.++| +++.       ..++.++|++|++.-       .....+|+.+
T Consensus         6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~-------~~~~~i~~v~q~~~~-------~~~~~~tv~~   70 (223)
T TIGR03771         6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG-ASPG-------KGWRHIGYVPQRHEF-------AWDFPISVAH   70 (223)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-ccch-------HhhCcEEEecccccc-------cCCCCccHHH
Confidence            899999999999999999999999999999999988 3321       124579999998521       0112357777


Q ss_pred             EEEcCCceEEE-E-CCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        105 QISIPSNTRYM-I-NGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       105 ~i~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      |+.++...... . .......+++.++++.+++..   ..+..+|+ |+   +||++++.+|+
T Consensus        71 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  133 (223)
T TIGR03771        71 TVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPS  133 (223)
T ss_pred             HHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            76554210000 0 011122356788999999975   45667777 33   99999999986

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.71  E-value=3.4e-19  Score=124.97  Aligned_cols=54  Identities=26%  Similarity=0.442  Sum_probs=48.4

Q ss_pred             EEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514          7 VLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus         7 ~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      +++|+ +.|++..++.+++     +++++|+||||||||||+++|+|+++|++|++++++
T Consensus         1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g   60 (180)
T cd03214           1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG   60 (180)
T ss_pred             CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence            46788 8898777888887     689999999999999999999999999999998876

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.71  E-value=1.4e-18  Score=131.96  Aligned_cols=148  Identities=17%  Similarity=0.178  Sum_probs=109.2

Q ss_pred             eEEEEEEeCe-eeec----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc-----ccchhhhhHHHHHH
Q psy17514          2 YIKSMVLDGF-KSYG----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ-----VKQVRANTLQELIY   66 (159)
Q Consensus         2 ~~~~l~l~~~-~~~~----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~-----~g~i~~~~~~~~~~   66 (159)
                      ....|+++|+ ..|.    ...+++++|     ||.++|+|+||||||-...+|.++++..     +|+|.++| .++..
T Consensus         3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G-~dll~   81 (534)
T COG4172           3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG-EDLLA   81 (534)
T ss_pred             CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC-hhhhc
Confidence            3456899999 8886    566788887     7999999999999999999999999652     68899998 56653


Q ss_pred             hhC--CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc------C
Q psy17514         67 KNG--QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV------N  138 (159)
Q Consensus        67 ~~~--~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~  138 (159)
                      ...  -...+..+|+++||+|.-+       +.|-+|+.+++.-..+.... -++.+...++.++|+.+||..      .
T Consensus        82 ~se~~lr~iRG~~I~MIFQEPMtS-------LNPl~tIg~Qi~E~l~~Hrg-~~~~~Ar~r~lelL~~VgI~~p~~rl~~  153 (534)
T COG4172          82 ASERQLRGVRGNKIGMIFQEPMTS-------LNPLHTIGKQLAEVLRLHRG-LSRAAARARALELLELVGIPEPEKRLDA  153 (534)
T ss_pred             CCHHHHhhhcccceEEEecccccc-------cCcHhHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHcCCCchhhhhhh
Confidence            221  1223456899999998654       44445666665443221111 123445678999999999975      5


Q ss_pred             CCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        139 NPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       139 ~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      +|.++|+ |+   .||+||+++|+
T Consensus       154 yPHeLSGGqRQRVMIAMALan~P~  177 (534)
T COG4172         154 YPHELSGGQRQRVMIAMALANEPD  177 (534)
T ss_pred             CCcccCcchhhHHHHHHHHcCCCC
Confidence            8999999 44   99999999997

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.71  E-value=5.5e-19  Score=141.09  Aligned_cols=143  Identities=12%  Similarity=0.096  Sum_probs=92.8

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.+  ..++++++     |++++|+||||||||||+++|+|+.+|++|+|.++| +++.. .......++.+
T Consensus       250 ~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~-~~~~~~~~~~i  325 (491)
T PRK10982        250 ILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG-KKINN-HNANEAINHGF  325 (491)
T ss_pred             EEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECC-EECCC-CCHHHHHHCCC
Confidence            4889999 653  34677777     799999999999999999999999999999999887 33211 00001124568


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEE-----EEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch-
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQ-----ISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG-  147 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~-----i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~-  147 (159)
                      ++++|++...      .+++++++.+|     +..... .+.........+.+.++++.+++. .   ..+..||+ |+ 
T Consensus       326 ~~~~q~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q  398 (491)
T PRK10982        326 ALVTEERRST------GIYAYLDIGFNSLISNIRNYKN-KVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ  398 (491)
T ss_pred             EEcCCchhhC------CcccCCcHHHheehhhhhhhcc-cccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence            9999875211      23444444333     321110 000001112235678889998884 2   45778888 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        +||++++.+|+
T Consensus       399 rv~la~al~~~p~  411 (491)
T PRK10982        399 KVIIGRWLLTQPE  411 (491)
T ss_pred             HHHHHHHHhcCCC
Confidence              99999999986

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.71  E-value=1.4e-18  Score=151.86  Aligned_cols=135  Identities=16%  Similarity=0.168  Sum_probs=100.0

Q ss_pred             EEEeCe-eeec----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC---CcccchhhhhHHHHHHhhCCCc
Q psy17514          6 MVLDGF-KSYG----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG---IQVKQVRANTLQELIYKNGQAG   72 (159)
Q Consensus         6 l~l~~~-~~~~----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~---~~~g~i~~~~~~~~~~~~~~~~   72 (159)
                      |+++|+ +.|+    .+.+|++++     |++++|+|||||||||||++|+|...   +++|+|.++| .++.      .
T Consensus       760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G-~~~~------~  832 (1394)
T TIGR00956       760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG-RPLD------S  832 (1394)
T ss_pred             EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECC-EECC------h
Confidence            788999 8884    457899998     68999999999999999999999987   6789999988 3321      1


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC---CEEeCHHHHHHHHHhcCccc--CCCe-----e
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN---GSSVNPKRVSDLFSSVNLNV--NNPH-----F  142 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~--~~~~-----~  142 (159)
                      ..++.+++++|++         .+++.+||+|++.+...  .+..   ......+++.++++.++|..  +...     .
T Consensus       833 ~~~~~i~yv~Q~~---------~~~~~~Tv~E~L~~~a~--l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~  901 (1394)
T TIGR00956       833 SFQRSIGYVQQQD---------LHLPTSTVRESLRFSAY--LRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEG  901 (1394)
T ss_pred             hhhcceeeecccc---------cCCCCCCHHHHHHHHHH--hCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCC
Confidence            1356799999985         35677899999987532  1111   11122356789999999975  2221     4


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   +||++|+.+|+
T Consensus       902 LSgGqrqRl~Ia~aL~~~P~  921 (1394)
T TIGR00956       902 LNVEQRKRLTIGVELVAKPK  921 (1394)
T ss_pred             CCHHHhhHHHHHHHHHcCCC
Confidence            666 44   99999999995

>PLN03073 ABC transporter F family; Provisional

Probab=99.71  E-value=6.6e-18  Score=139.55  Aligned_cols=125  Identities=18%  Similarity=0.163  Sum_probs=90.3

Q ss_pred             EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ +.|++ ..+|.+++     +++++|+|||||||||||++|+|+++|++|+|++.+              +..
T Consensus       508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~--------------~~~  573 (718)
T PLN03073        508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA--------------KVR  573 (718)
T ss_pred             eEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC--------------cee
Confidence            4899999 99964 56888888     689999999999999999999999999999997642              246


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hH
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RV  149 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~i  149 (159)
                      |+|++|++.           +.+++.++........+  .+  ...+++.++++.+++..    ..+..||+ |+   +|
T Consensus       574 igyv~Q~~~-----------~~l~~~~~~~~~~~~~~--~~--~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaL  638 (718)
T PLN03073        574 MAVFSQHHV-----------DGLDLSSNPLLYMMRCF--PG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  638 (718)
T ss_pred             EEEEecccc-----------ccCCcchhHHHHHHHhc--CC--CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHH
Confidence            999998741           11233333221100000  11  23467889999999963    35677777 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |++++.+|+
T Consensus       639 AraL~~~p~  647 (718)
T PLN03073        639 AKITFKKPH  647 (718)
T ss_pred             HHHHhcCCC
Confidence            999999985

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.71  E-value=8.6e-18  Score=125.41  Aligned_cols=117  Identities=16%  Similarity=0.162  Sum_probs=82.9

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.  ...+|.+++     |++++|+||||||||||+++|+|+++|++|+|.+++                .|
T Consensus        39 ~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------------~i  100 (282)
T cd03291          39 NLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------------RI  100 (282)
T ss_pred             eEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------------EE
Confidence            5888999 53  456788887     789999999999999999999999999999998754                38


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeEE
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFLI  144 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l~  144 (159)
                      +|++|++         .+++ .|+.+|+.++..  .       ...++.+.++.+++..              ..+..+|
T Consensus       101 ~yv~q~~---------~l~~-~tv~enl~~~~~--~-------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LS  161 (282)
T cd03291         101 SFSSQFS---------WIMP-GTIKENIIFGVS--Y-------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLS  161 (282)
T ss_pred             EEEeCcc---------cccc-cCHHHHhhcccc--c-------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCC
Confidence            9999885         2444 388888876421  1       1122333344333321              1234666


Q ss_pred             e-Ch---hHhHhhcCCCC
Q psy17514        145 M-QG---RVTKVLNMKPH  158 (159)
Q Consensus       145 ~-q~---~ia~~l~~~p~  158 (159)
                      + |+   ++|++++.+|+
T Consensus       162 gGq~qrv~lAraL~~~p~  179 (282)
T cd03291         162 GGQRARISLARAVYKDAD  179 (282)
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            6 33   99999999986

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>KOG0056|consensus

Probab=99.71  E-value=1.3e-17  Score=129.66  Aligned_cols=133  Identities=14%  Similarity=0.174  Sum_probs=100.3

Q ss_pred             EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .++++|+ ..|+ ++++|.++|     |..++|+||+|+||||+++.+..+.+..+|.|.++| +|+.+...  ...|..
T Consensus       537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDg-qdIrnvt~--~SLRs~  613 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDG-QDIRNVTQ--SSLRSS  613 (790)
T ss_pred             eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcC-chHHHHHH--HHHHHh
Confidence            5889999 9996 578999998     678999999999999999999999999999999999 66643222  225788


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l  143 (159)
                      ||+|+|+.         .+|. -|+..||.++.        ..+..+++.+..+..++.+              +.--.+
T Consensus       614 IGVVPQDt---------vLFN-dTI~yNIryak--------~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkL  675 (790)
T KOG0056|consen  614 IGVVPQDT---------VLFN-DTILYNIRYAK--------PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKL  675 (790)
T ss_pred             cCcccCcc---------eeec-ceeeeheeecC--------CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccccc
Confidence            99999985         3444 38888888753        2234466666666665543              223345


Q ss_pred             Ee---Ch-hHhHhhcCCCC
Q psy17514        144 IM---QG-RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~---q~-~ia~~l~~~p~  158 (159)
                      |+   |+ +|||.+..+|.
T Consensus       676 SGGEKQRVAiARtiLK~P~  694 (790)
T KOG0056|consen  676 SGGEKQRVAIARTILKAPS  694 (790)
T ss_pred             CCcchhhHHHHHHHhcCCc
Confidence            55   44 99999999884

>PTZ00243 ABC transporter; Provisional

Probab=99.70  E-value=2.9e-18  Score=151.15  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=100.6

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ .+|.+  ..+|++++     |+.++|+|++|||||||+++|.+++.|++|+|.++| .++...+.  ...++
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG-~di~~i~l--~~LR~ 1384 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNG-REIGAYGL--RELRR 1384 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEcccCCH--HHHHh
Confidence            4899999 99965  34899998     789999999999999999999999999999999998 44422111  12467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++++|+|         .+|+. |+++||....         ..+.+++.++++.+++..              +.-..
T Consensus      1385 ~I~iVpQdp---------~LF~g-TIreNIdp~~---------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~n 1445 (1560)
T PTZ00243       1385 QFSMIPQDP---------VLFDG-TVRQNVDPFL---------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSN 1445 (1560)
T ss_pred             cceEECCCC---------ccccc-cHHHHhCccc---------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCc
Confidence            899999997         35654 9999996431         234577888888887753              12245


Q ss_pred             EEe-Ch---hHhHhhcCC-CC
Q psy17514        143 LIM-QG---RVTKVLNMK-PH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~-p~  158 (159)
                      ||+ |+   +|||||..+ |+
T Consensus      1446 LSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243       1446 YSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred             CCHHHHHHHHHHHHHhcCCCC
Confidence            666 44   999999985 54

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.70  E-value=4.9e-18  Score=117.34  Aligned_cols=55  Identities=22%  Similarity=0.382  Sum_probs=50.5

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      |+++|+ +.|++.+++.+++     +++++|+||||||||||+++|+|+.+|++|++++++
T Consensus         1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g   61 (163)
T cd03216           1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG   61 (163)
T ss_pred             CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence            468899 9998888888887     789999999999999999999999999999999877

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.70  E-value=2.4e-19  Score=126.10  Aligned_cols=143  Identities=15%  Similarity=0.194  Sum_probs=92.8

Q ss_pred             EEEeCe-eeec-----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514          6 MVLDGF-KSYG-----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         6 l~l~~~-~~~~-----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      +.+.|. +.|.     ++++|.+++     ++++.|+|.||||||||+++|+|-+.|++|.|++++ .++.+...  ..+
T Consensus         2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg-~dVtk~~~--~~R   78 (263)
T COG1101           2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDG-VDVTKKSV--AKR   78 (263)
T ss_pred             cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECc-eecccCCH--HHH
Confidence            455666 5543     245666666     789999999999999999999999999999999998 55533221  113


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCce----EEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNT----RYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-  145 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-  145 (159)
                      ...++-|||+|..       ...+++|++||+.+...+    .+...-.....+...+.++.+++..    ..+..++| 
T Consensus        79 A~~larVfQdp~~-------gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSG  151 (263)
T COG1101          79 ANLLARVFQDPLA-------GTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSG  151 (263)
T ss_pred             hhHHHHHhcchhh-------CCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccc
Confidence            3468889999854       357789999999874321    1110000112345566677776654    34555444 


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   .+.++....|+
T Consensus       152 GQRQalsL~MAtl~~pk  168 (263)
T COG1101         152 GQRQALSLLMATLHPPK  168 (263)
T ss_pred             hHHHHHHHHHHhcCCCc
Confidence             55   45555555554

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.70  E-value=5.5e-18  Score=134.26  Aligned_cols=126  Identities=15%  Similarity=0.136  Sum_probs=86.5

Q ss_pred             EEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          6 MVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         6 l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      ++++|+ +.|+.   +.+|.+++     |++++|+|||||||||||++|+|+++|++|+|.+++. +            .
T Consensus        22 L~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~-~------------~   88 (549)
T PRK13545         22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS-A------------A   88 (549)
T ss_pred             eEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCE-e------------e
Confidence            566666 56655   35788887     7899999999999999999999999999999988761 1            1


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      .+.+   .+         .+.+.+|+.+|+.+...  +.........+++.++++.++|..   ..+..+|+ |+   ++
T Consensus        89 ~i~~---~~---------~l~~~lTV~EnL~l~~~--~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaL  154 (549)
T PRK13545         89 LIAI---SS---------GLNGQLTGIENIELKGL--MMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGF  154 (549)
T ss_pred             eEEe---cc---------ccCCCCcHHHHHHhhhh--hcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHH
Confidence            1111   11         23445688888765321  110011112345667889999865   45667777 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |++|+.+|+
T Consensus       155 ArAL~~~P~  163 (549)
T PRK13545        155 AISVHINPD  163 (549)
T ss_pred             HHHHHhCCC
Confidence            999999986

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.69  E-value=7.5e-19  Score=140.87  Aligned_cols=142  Identities=9%  Similarity=0.112  Sum_probs=92.0

Q ss_pred             EEEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          5 SMVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         5 ~l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      .|+++|+..    .+|++++     +++++|+||||||||||+++|+|+++|++|+|.+++ +++.. .......+..|+
T Consensus       268 ~l~~~~l~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g-~~i~~-~~~~~~~~~~i~  341 (510)
T PRK15439        268 VLTVEDLTG----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNG-KEINA-LSTAQRLARGLV  341 (510)
T ss_pred             eEEEeCCCC----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECC-EECCC-CCHHHHHhCCcE
Confidence            477888821    1355555     789999999999999999999999999999999877 22211 000001234699


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch---hHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~---~ia  150 (159)
                      |++|++..      ..+++.+|+.+|+.......... .......+++.++++.++|. .   ..+..||+ |+   +||
T Consensus       342 ~v~q~~~~------~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la  415 (510)
T PRK15439        342 YLPEDRQS------SGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIA  415 (510)
T ss_pred             ECCCChhh------CCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHH
Confidence            99987411      12556667777764321000000 01111234678899999996 3   45677877 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++++.+|+
T Consensus       416 ~al~~~p~  423 (510)
T PRK15439        416 KCLEASPQ  423 (510)
T ss_pred             HHHhhCCC
Confidence            99999986

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.69  E-value=5.2e-18  Score=125.55  Aligned_cols=127  Identities=16%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             EEEEeCe-eeecC--------------------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514          5 SMVLDGF-KSYGT--------------------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA   58 (159)
Q Consensus         5 ~l~l~~~-~~~~~--------------------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~   58 (159)
                      +++++|+ +.|..                    +.++.+++     |++++|+||||||||||+++|+|+++|++|++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~   83 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR   83 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            5778888 76643                    23566666     7899999999999999999999999999999987


Q ss_pred             hhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-
Q psy17514         59 NTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-  137 (159)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-  137 (159)
                      ++.                +.+++|.+         .+.+.+|+.+|+.+...  ..........+.+.++++.+++.. 
T Consensus        84 ~g~----------------~~~~~~~~---------~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~  136 (264)
T PRK13546         84 NGE----------------VSVIAISA---------GLSGQLTGIENIEFKML--CMGFKRKEIKAMTPKIIEFSELGEF  136 (264)
T ss_pred             CCE----------------EeEEeccc---------CCCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchh
Confidence            651                23444442         23445688888764311  100011111234456777888765 


Q ss_pred             --CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        138 --NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       138 --~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                        ..+..+|+ |.   ++|++++.+|+
T Consensus       137 ~~~~~~~LS~Gq~qrv~Laral~~~p~  163 (264)
T PRK13546        137 IYQPVKKYSSGMRAKLGFSINITVNPD  163 (264)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhhCCC
Confidence              34566766 33   99999999885

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.69  E-value=4e-18  Score=150.28  Aligned_cols=132  Identities=13%  Similarity=0.096  Sum_probs=100.6

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ .+|.+  ..+|+++|     |+.++|+|++|||||||+++|.+++.|++|+|.++| .++...+.  ...|.
T Consensus      1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG-~dI~~i~~--~~LR~ 1360 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG-LNIAKIGL--HDLRF 1360 (1522)
T ss_pred             cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECC-EEccccCH--HHHHh
Confidence            4899999 99965  46889888     789999999999999999999999999999999998 44422111  12477


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      +|++++|+|         .+|+. |+++|+....         ...++++.++++.+++..              +.-..
T Consensus      1361 ~i~iVpQdp---------~LF~g-TIr~NLdp~~---------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1421 (1522)
T TIGR00957      1361 KITIIPQDP---------VLFSG-SLRMNLDPFS---------QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421 (1522)
T ss_pred             cCeEECCCC---------cccCc-cHHHHcCccc---------CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCc
Confidence            899999997         46664 9999996421         234567777887776642              12245


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   +||||+..+|+
T Consensus      1422 LSgGQrQrl~LARALLr~~~ 1441 (1522)
T TIGR00957      1422 LSVGQRQLVCLARALLRKTK 1441 (1522)
T ss_pred             CCHHHHHHHHHHHHHHcCCC
Confidence            666 44   99999999986

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.69  E-value=6.7e-18  Score=138.47  Aligned_cols=56  Identities=16%  Similarity=0.229  Sum_probs=51.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      .|+++|+ ++|++..+|.+++     |++++|+|||||||||||++|+|++.|++|+|.+.+
T Consensus         3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~   64 (635)
T PRK11147          3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ   64 (635)
T ss_pred             EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence            3899999 9999888999988     789999999999999999999999999999998754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.69  E-value=6.8e-18  Score=123.77  Aligned_cols=104  Identities=14%  Similarity=0.145  Sum_probs=77.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR  104 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~  104 (159)
                      +++++|+||||||||||+++|+|+++|++|++.+++               ..|++++|.+.         .+...||.+
T Consensus        25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g---------------~~i~~~~q~~~---------~~~~~tv~e   80 (246)
T cd03237          25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIEL---------------DTVSYKPQYIK---------ADYEGTVRD   80 (246)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECC---------------ceEEEeccccc---------CCCCCCHHH
Confidence            789999999999999999999999999999998765               15889988752         234467877


Q ss_pred             EEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        105 QISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       105 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      ++..... ..   .  .......++++.++|..   ..+..+|+ |+   +||++|+.+|+
T Consensus        81 ~l~~~~~-~~---~--~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~  135 (246)
T cd03237          81 LLSSITK-DF---Y--THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDAD  135 (246)
T ss_pred             HHHHHhh-hc---c--ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            7654211 01   1  11234677888998864   45677777 33   99999999986

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.68  E-value=1.7e-17  Score=113.62  Aligned_cols=142  Identities=18%  Similarity=0.251  Sum_probs=97.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh----HHHHHHhhCC--Cc
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT----LQELIYKNGQ--AG   72 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~----~~~~~~~~~~--~~   72 (159)
                      .|+++++ |.|+......++|     +|+.+|+|++||||||||++|++-+.|+.|.+.+..    ..++....+.  ..
T Consensus         6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~   85 (258)
T COG4107           6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR   85 (258)
T ss_pred             ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence            5889999 9999877777777     689999999999999999999999999999886642    1233221111  11


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEE----cCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEE
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQIS----IPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLI  144 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~  144 (159)
                      ..+..-++|.|+|.+.+..       ..+..-||.    .-+...|   +  .......+||+.+.|+.    +.|..+|
T Consensus        86 L~RTeWG~VhQnP~DGLRm-------~VSAG~NiGERlma~G~RHY---G--~iR~~a~~WL~~VEI~~~RiDD~PrtFS  153 (258)
T COG4107          86 LLRTEWGFVHQNPRDGLRM-------QVSAGGNIGERLMAIGARHY---G--NIRAEAQDWLEEVEIDLDRIDDLPRTFS  153 (258)
T ss_pred             HhhhccceeecCcccccee-------eeccCCccchhHHhhhhhhh---h--hHHHHHHHHHHhcccCcccccCcccccc
Confidence            1234568999998654311       122222321    1111122   1  23467789999999975    6788999


Q ss_pred             e---Ch-hHhHhhcCCCC
Q psy17514        145 M---QG-RVTKVLNMKPH  158 (159)
Q Consensus       145 ~---q~-~ia~~l~~~p~  158 (159)
                      +   |+ +|||-|...|+
T Consensus       154 GGMqQRLQiARnLVt~Pr  171 (258)
T COG4107         154 GGMQQRLQIARNLVTRPR  171 (258)
T ss_pred             hHHHHHHHHHHHhccCCc
Confidence            8   33 99999999885

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.68  E-value=4.6e-16  Score=110.59  Aligned_cols=121  Identities=33%  Similarity=0.530  Sum_probs=76.7

Q ss_pred             EEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccc-hhhhhHHHHHHhhCC--CceeEEEEEE
Q psy17514          4 KSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQ-VRANTLQELIYKNGQ--AGVTKASVTL   80 (159)
Q Consensus         4 ~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~-i~~~~~~~~~~~~~~--~~~~~~~i~~   80 (159)
                      +.+++.||++|+....+ .+..++++|+||||||||||+++|++++++..+. ++.....+++..+..  .....+.|++
T Consensus         2 ~~~~~~~fr~~~~~~~l-~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (197)
T cd03278           2 KKLELKGFKSFADKTTI-PFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL   80 (197)
T ss_pred             cEEEEeCCcCcCCCeee-ecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEE
Confidence            57899999999554434 3555599999999999999999999998776332 222222233322211  1123578999


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEe-Ch---hHhHhhc
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIM-QG---RVTKVLN  154 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-q~---~ia~~l~  154 (159)
                      +||+++.         +          ++    ..      ..+++.++++..+.....+..+|+ |+   ++|++++
T Consensus        81 vfq~~~~---------~----------~~----~~------~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~  129 (197)
T cd03278          81 TFDNSDG---------R----------YS----II------SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFA  129 (197)
T ss_pred             EEEcCCC---------c----------ee----EE------ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHH
Confidence            9999631         1          11    00      124666777774444455677777 33   8888875

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.68  E-value=4.9e-18  Score=135.49  Aligned_cols=130  Identities=16%  Similarity=0.159  Sum_probs=94.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++++ +.|+++.++.+++     ++.++|||+|||||||||++|+|.+.|++|+|...+              ..+|
T Consensus         3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~--------------~~~v   68 (530)
T COG0488           3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK--------------GLRV   68 (530)
T ss_pred             eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC--------------CceE
Confidence            4899999 9999999999988     689999999999999999999999999999987543              2479


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE-----------------------------EECCEEeCHHHHHHH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY-----------------------------MINGSSVNPKRVSDL  129 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~-----------------------------~~~~~~~~~~~~~~~  129 (159)
                      +++.|++         ..++..||.+.+..+.....                             ...+ -..+.++..+
T Consensus        69 ~~l~Q~~---------~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~e~~~~~~  138 (530)
T COG0488          69 GYLSQEP---------PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDG-WTLEARAEEA  138 (530)
T ss_pred             EEeCCCC---------CcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcc-cchHHHHHHH
Confidence            9999986         34444566554443321000                             0001 1123566777


Q ss_pred             HHhcCccc-CC-CeeEEe-Ch---hHhHhhcCCCC
Q psy17514        130 FSSVNLNV-NN-PHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       130 l~~~~l~~-~~-~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      +..+++.. +. ...||+ |+   ++|++|..+|+
T Consensus       139 L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pD  173 (530)
T COG0488         139 LLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPD  173 (530)
T ss_pred             HhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCC
Confidence            88888876 33 356666 44   99999999996

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.67  E-value=8e-17  Score=109.10  Aligned_cols=55  Identities=27%  Similarity=0.392  Sum_probs=49.2

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      |+++|+ +.|++..++.+++     +++++|+||||||||||+++|+|+++|++|++.+++
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~   61 (144)
T cd03221           1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS   61 (144)
T ss_pred             CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC
Confidence            468899 8898777888877     789999999999999999999999999999998865

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=1.2e-17  Score=136.98  Aligned_cols=139  Identities=13%  Similarity=0.133  Sum_probs=88.2

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ ++|+++.+|.++|     |++++|+|||||||||||++|+|++.|++|+|.+.+ .             ..++
T Consensus         2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~-~-------------~~i~   67 (638)
T PRK10636          2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG-N-------------WQLA   67 (638)
T ss_pred             EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-C-------------CEEE
Confidence            789999 9999988999998     789999999999999999999999999999998765 1             1367


Q ss_pred             EEEEcCCCCCCC-CCc-----cCCCeEEEE------EEE--EcCC-ceEEEECCEEeCHHHHHHHHHhcCccc----CCC
Q psy17514         80 LTFDNSDKKNCP-IGY-----ENDNTIVIC------RQI--SIPS-NTRYMINGSSVNPKRVSDLFSSVNLNV----NNP  140 (159)
Q Consensus        80 ~v~q~~~~~~~~-~~~-----~~~~~~tv~------~~i--~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~  140 (159)
                      ++.|.+...... .++     ..+..++..      ++.  .+.. ...+...+......++.++++.++|..    ..+
T Consensus        68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~  147 (638)
T PRK10636         68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV  147 (638)
T ss_pred             EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch
Confidence            777643111000 000     000000000      000  0000 000000011123467889999999952    345


Q ss_pred             eeEEe-Ch---hHhHhhcCCCC
Q psy17514        141 HFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       141 ~~l~~-q~---~ia~~l~~~p~  158 (159)
                      ..||+ |+   ++|++|+.+|+
T Consensus       148 ~~LSgGerqRv~LA~aL~~~P~  169 (638)
T PRK10636        148 SDFSGGWRMRLNLAQALICRSD  169 (638)
T ss_pred             hhcCHHHHHHHHHHHHHccCCC
Confidence            67777 33   99999999996

>PRK13409 putative ATPase RIL; Provisional

Probab=99.67  E-value=1.7e-17  Score=134.79  Aligned_cols=130  Identities=12%  Similarity=0.036  Sum_probs=83.6

Q ss_pred             e-eeecCC-eeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchh-----------hhhHHHHHHhhCCCce
Q psy17514         11 F-KSYGTR-VEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVR-----------ANTLQELIYKNGQAGV   73 (159)
Q Consensus        11 ~-~~~~~~-~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~-----------~~~~~~~~~~~~~~~~   73 (159)
                      + ++|+.. .+|.+++    |++++|+|||||||||||++|+|++.|+.|++.           +.| .++.........
T Consensus        79 ~~~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G-~~l~~~~~~~~~  157 (590)
T PRK13409         79 PVHRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRG-TELQNYFKKLYN  157 (590)
T ss_pred             ceEEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCC-hHHHHHHHHHhc
Confidence            5 678763 5788887    789999999999999999999999999999986           555 333221100000


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--  147 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--  147 (159)
                      ....+++.+|.....     ..++. .||.+++..           ....+++.++++.++|..   ..+..||+ |.  
T Consensus       158 ~~~~~~~~~q~~~~~-----p~~~~-~tv~e~l~~-----------~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr  220 (590)
T PRK13409        158 GEIKVVHKPQYVDLI-----PKVFK-GKVRELLKK-----------VDERGKLDEVVERLGLENILDRDISELSGGELQR  220 (590)
T ss_pred             cCcceeecccchhhh-----hhhhc-chHHHHHHh-----------hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence            122345555532100     01111 155554431           112357888999999964   45667777 33  


Q ss_pred             -hHhHhhcCCCC
Q psy17514        148 -RVTKVLNMKPH  158 (159)
Q Consensus       148 -~ia~~l~~~p~  158 (159)
                       +||++++.+|+
T Consensus       221 v~ia~al~~~p~  232 (590)
T PRK13409        221 VAIAAALLRDAD  232 (590)
T ss_pred             HHHHHHHhcCCC
Confidence             99999999986

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=7.4e-18  Score=131.73  Aligned_cols=132  Identities=15%  Similarity=0.195  Sum_probs=100.5

Q ss_pred             EEEEeCe-eeecCCe--eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGTRV--EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~--~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .++++|+ .+|.+.+  +|+++|     ||-++|+|++|||||||+..|+|..+|++|+|+.+| .++...+++  ..+.
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g-~~~~~l~~~--~~~e  412 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG-VEIASLDEQ--ALRE  412 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC-cChhhCChh--hHHH
Confidence            4899999 9997654  899998     789999999999999999999999999999999998 444332221  1356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CC-----------Cee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NN-----------PHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~-----------~~~  142 (159)
                      .++++.|.+         .+|.. |+++|+....        ...+.+++.++++.++|.+   ..           -..
T Consensus       413 ~i~vl~Qr~---------hlF~~-Tlr~NL~lA~--------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~  474 (573)
T COG4987         413 TISVLTQRV---------HLFSG-TLRDNLRLAN--------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRR  474 (573)
T ss_pred             HHhhhccch---------HHHHH-HHHHHHhhcC--------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCc
Confidence            789999986         34443 8999987753        3456788999999999865   11           234


Q ss_pred             EEe-C--h-hHhHhhcCCC
Q psy17514        143 LIM-Q--G-RVTKVLNMKP  157 (159)
Q Consensus       143 l~~-q--~-~ia~~l~~~p  157 (159)
                      +|+ +  + +|||++..+.
T Consensus       475 LSGGE~rRLAlAR~LL~da  493 (573)
T COG4987         475 LSGGERRRLALARALLHDA  493 (573)
T ss_pred             CCchHHHHHHHHHHHHcCC
Confidence            555 2  2 9999998764

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.66  E-value=2.3e-19  Score=120.36  Aligned_cols=107  Identities=16%  Similarity=0.217  Sum_probs=77.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR  104 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~  104 (159)
                      +++++|+|+||||||||+++|+|...|+.|.|.+++ .++..  ......+..+++++|++         .+++.+|+.+
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~-~~~~~--~~~~~~~~~i~~~~~~~---------~~~~~~tv~~   78 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILING-KDISD--IDIEELRRRIGYVPQDP---------QLFPGLTVRE   78 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETT-EEGTT--SHHHHHHHTEEEEESSH---------CHHTTSBHHH
T ss_pred             CCEEEEEccCCCccccceeeeccccccccccccccc-ccccc--ccccccccccccccccc---------cccccccccc
Confidence            799999999999999999999999999999998876 22211  00111356799999884         3555566666


Q ss_pred             EEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---C----CCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        105 QISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---N----NPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       105 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~----~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      +               ....++.++++.+++..   .    ....+|+ |+   +||++++.+|+
T Consensus        79 ~---------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~  128 (137)
T PF00005_consen   79 N---------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPK  128 (137)
T ss_dssp             H---------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSS
T ss_pred             c---------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCC
Confidence            5               23456788888887754   2    2366666 33   99999999885

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.66  E-value=3.4e-15  Score=129.36  Aligned_cols=147  Identities=33%  Similarity=0.579  Sum_probs=104.5

Q ss_pred             EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chhhhhHHHHHHhhCC-CceeEEEEEE
Q psy17514          3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK-QVRANTLQELIYKNGQ-AGVTKASVTL   80 (159)
Q Consensus         3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~~~~~~~~~~~~~~-~~~~~~~i~~   80 (159)
                      +.+|.+.||++|.+...+ +++.++++|+|||||||||+|+||.++++...+ ..+...+.++++.+.. .....+.|.+
T Consensus         2 i~~l~l~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~~   80 (1164)
T TIGR02169         2 IERIELENFKSFGKKKVI-PFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVTV   80 (1164)
T ss_pred             eeEEEEeCeeeECCeeEE-eecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEEE
Confidence            678999999999875555 588899999999999999999999999876532 3444444566654111 1223567888


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEc--CCc-eEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISI--PSN-TRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP  157 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~--~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p  157 (159)
                      +|.+.+..       +....+|.+.+..  .+. +.|++++.+...+.+.+++..+++..... .+..||.+..++.+.|
T Consensus        81 ~f~~~~~~-------~~~~~~i~r~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~-~~~~qg~~~~~~~~~~  152 (1164)
T TIGR02169        81 TFKNDDGK-------FPDELEVVRRLKVTDDGKYSYYYLNGQRVRLSEIHDFLAAAGIYPEGY-NVVLQGDVTDFISMSP  152 (1164)
T ss_pred             EEEcCCCC-------CCCcEEEEEEEEEcCCCCcceEEECCccccHHHHHHHHHHcCCCcCcc-eEEecchHHHHHCCCH
Confidence            88764321       1133456554443  333 46889999888889999999999987544 3567998888888877


Q ss_pred             C
Q psy17514        158 H  158 (159)
Q Consensus       158 ~  158 (159)
                      .
T Consensus       153 ~  153 (1164)
T TIGR02169       153 V  153 (1164)
T ss_pred             H
Confidence            5

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.66  E-value=4.1e-16  Score=111.42  Aligned_cols=75  Identities=28%  Similarity=0.478  Sum_probs=53.9

Q ss_pred             EEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHh----CCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          4 KSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVL----GIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         4 ~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      ..|+++||++|.....+ .++.++++|+|||||||||||++|++++    .+..+.+.  ...+.+...    ...+.|+
T Consensus         2 ~~l~l~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~--~~~~~i~~~----~~~~~v~   74 (204)
T cd03240           2 DKLSIRNIRSFHERSEI-EFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGA--HDPKLIREG----EVRAQVK   74 (204)
T ss_pred             cEEEEECcccccCceEE-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCccccccc--chHHHHhCC----CCcEEEE
Confidence            57899999996555444 4777899999999999999999997554    44444443  223444322    2467899


Q ss_pred             EEEEcC
Q psy17514         80 LTFDNS   85 (159)
Q Consensus        80 ~v~q~~   85 (159)
                      ++||++
T Consensus        75 ~~f~~~   80 (204)
T cd03240          75 LAFENA   80 (204)
T ss_pred             EEEEeC
Confidence            999985

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.66  E-value=5.8e-18  Score=138.42  Aligned_cols=126  Identities=15%  Similarity=0.200  Sum_probs=92.4

Q ss_pred             CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCC
Q psy17514         16 TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDK   87 (159)
Q Consensus        16 ~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~   87 (159)
                      ++.+|++++     |++++|+|||||||||||++|+|...+.   .|+|.++|. ++.     ....++.+++++|++  
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~-~~~-----~~~~~~~i~yv~Q~~--  108 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM-PID-----AKEMRAISAYVQQDD--  108 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCE-ECC-----HHHHhhhceeecccc--
Confidence            566888888     6899999999999999999999998774   788988872 211     011356799999985  


Q ss_pred             CCCCCCccCCCeEEEEEEEEcCCceEEEECC---EEeCHHHHHHHHHhcCccc--CCC-------eeEEe-Ch---hHhH
Q psy17514         88 KNCPIGYENDNTIVICRQISIPSNTRYMING---SSVNPKRVSDLFSSVNLNV--NNP-------HFLIM-QG---RVTK  151 (159)
Q Consensus        88 ~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~--~~~-------~~l~~-q~---~ia~  151 (159)
                             .+++.+||+||+.++..  ++...   .....+++.++++.++|.+  +..       ..+|+ |+   .||+
T Consensus       109 -------~~~~~lTV~e~l~f~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~  179 (617)
T TIGR00955       109 -------LFIPTLTVREHLMFQAH--LRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFAS  179 (617)
T ss_pred             -------ccCccCcHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHH
Confidence                   47788999999987543  22111   1223456889999999965  222       24777 44   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       180 aL~~~p~  186 (617)
T TIGR00955       180 ELLTDPP  186 (617)
T ss_pred             HHHcCCC
Confidence            9999986

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.65  E-value=3.2e-17  Score=144.37  Aligned_cols=131  Identities=12%  Similarity=0.136  Sum_probs=99.1

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ .+|..  ..+|++++     |+.++|+|+||||||||+++|.++.. .+|+|.++| .++...+.  ...|.
T Consensus      1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG-~di~~i~~--~~lR~ 1292 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDG-VSWNSVTL--QTWRK 1292 (1490)
T ss_pred             eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECC-EEcccCCH--HHHHh
Confidence            5899999 99964  57899998     78999999999999999999999987 789999998 34321111  12467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---C-----------CCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---N-----------NPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~-----------~~~~  142 (159)
                      +|++++|+|         .+|+. |+++|+....         ...++++.++++.++|..   .           .-..
T Consensus      1293 ~is~IpQdp---------~LF~G-TIR~NLdp~~---------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~n 1353 (1490)
T TIGR01271      1293 AFGVIPQKV---------FIFSG-TFRKNLDPYE---------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYV 1353 (1490)
T ss_pred             ceEEEeCCC---------ccCcc-CHHHHhCccc---------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCc
Confidence            899999997         35654 9999995431         234678888888887743   1           1124


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++||+|..+|+
T Consensus      1354 LSgGQrQrL~LARALLr~~~ 1373 (1490)
T TIGR01271      1354 LSNGHKQLMCLARSILSKAK 1373 (1490)
T ss_pred             CCHHHHHHHHHHHHHhCCCC
Confidence            555 43   99999999886

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=1.2e-17  Score=119.58  Aligned_cols=105  Identities=18%  Similarity=0.149  Sum_probs=74.9

Q ss_pred             CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCC
Q psy17514         17 RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCP   91 (159)
Q Consensus        17 ~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   91 (159)
                      ..+|+++|     |+.++|+|+|||||||||+.|+|+++|++|++...|.                |+..+.-.      
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~----------------v~~li~lg------   97 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK----------------VAPLIELG------   97 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce----------------Eehhhhcc------
Confidence            45788888     6889999999999999999999999999999988761                22222111      


Q ss_pred             CCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--CCCeeEEeCh
Q psy17514         92 IGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--NNPHFLIMQG  147 (159)
Q Consensus        92 ~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~l~~q~  147 (159)
                        ..+.|++|.++|+.+-+.  +.--...+.++.++++.+...|.+  +.|..-.|.|
T Consensus        98 --~Gf~pelTGreNi~l~~~--~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSG  151 (249)
T COG1134          98 --AGFDPELTGRENIYLRGL--ILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSG  151 (249)
T ss_pred             --cCCCcccchHHHHHHHHH--HhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHH
Confidence              135567899999987433  221124455677888888888876  6675444544

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.64  E-value=1.3e-15  Score=109.46  Aligned_cols=80  Identities=30%  Similarity=0.456  Sum_probs=56.7

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHh-CCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFD----REFNAITGLNGTGKSNILDGICFVL-GIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      |.+.+|+++||++|.+...+. ++    +++++|+|||||||||||++|++.+ .+..+........+.+..    ....
T Consensus         1 m~~~~i~l~nf~~y~~~~~i~-~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~----~~~~   75 (213)
T cd03279           1 MKPLKLELKNFGPFREEQVID-FTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAP----GEDT   75 (213)
T ss_pred             CEEEEEEEECCcCcCCceEEe-CCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcC----CCcc
Confidence            788899999999987665443 43    5699999999999999999999755 344343333222233321    1246


Q ss_pred             EEEEEEEEcC
Q psy17514         76 ASVTLTFDNS   85 (159)
Q Consensus        76 ~~i~~v~q~~   85 (159)
                      +.|+++||++
T Consensus        76 ~~v~~~f~~~   85 (213)
T cd03279          76 AEVSFTFQLG   85 (213)
T ss_pred             EEEEEEEEEC
Confidence            7899999985

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.63  E-value=5.9e-17  Score=126.01  Aligned_cols=133  Identities=14%  Similarity=0.141  Sum_probs=95.2

Q ss_pred             EEEEeCe-eee--cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSY--GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~--~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|.++++ ..=  .+++++.+++     |+..+||||||||||||.++|.|..+|.+|.+|.+| -++.+.+.+  ...+
T Consensus       334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDg-a~l~qWd~e--~lG~  410 (580)
T COG4618         334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG-ADLRQWDRE--QLGR  410 (580)
T ss_pred             eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecc-hhhhcCCHH--Hhcc
Confidence            4777777 322  2356788888     689999999999999999999999999999999999 555443332  2468


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      +|+|.+|+-         .+|+. ||.|||.-..        ...+.+.+.+..+..+..+              +.-..
T Consensus       411 hiGYLPQdV---------eLF~G-TIaeNIaRf~--------~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~  472 (580)
T COG4618         411 HIGYLPQDV---------ELFDG-TIAENIARFG--------EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGAT  472 (580)
T ss_pred             ccCcCcccc---------eecCC-cHHHHHHhcc--------ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCC
Confidence            999999984         57775 8999986532        2233344444444433321              23356


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      ||+ |+   .+||++..+|.
T Consensus       473 LSgGQRQRIaLARAlYG~P~  492 (580)
T COG4618         473 LSGGQRQRIALARALYGDPF  492 (580)
T ss_pred             CCchHHHHHHHHHHHcCCCc
Confidence            777 54   99999999985

>PLN03130 ABC transporter C family member; Provisional

Probab=99.63  E-value=1.8e-16  Score=140.28  Aligned_cols=119  Identities=16%  Similarity=0.182  Sum_probs=92.7

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcc-cchhhhhHHHHHHhhCCCcee
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQV-KQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~-g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      .++++|+ .+|+.   ..+|++++     |++++|+||+|||||||+++|.|.+++.+ |++.+                
T Consensus       614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l----------------  677 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI----------------  677 (1622)
T ss_pred             ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE----------------
Confidence            4889999 89964   46788888     78999999999999999999999999998 88753                


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCC
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNP  140 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~  140 (159)
                      +..|+|++|+|         -++. -|+++||.++..         .+++++.++++..+|..              +.-
T Consensus       678 ~~~Iayv~Q~p---------~Lfn-gTIreNI~fg~~---------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G  738 (1622)
T PLN03130        678 RGTVAYVPQVS---------WIFN-ATVRDNILFGSP---------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERG  738 (1622)
T ss_pred             cCeEEEEcCcc---------ccCC-CCHHHHHhCCCc---------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCC
Confidence            34699999996         2343 599999998732         23466777777666532              233


Q ss_pred             eeEEe-Ch---hHhHhhcCCCC
Q psy17514        141 HFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       141 ~~l~~-q~---~ia~~l~~~p~  158 (159)
                      ..||+ |+   ++|||+..+|+
T Consensus       739 ~~LSGGQKQRIaLARAly~~~~  760 (1622)
T PLN03130        739 VNISGGQKQRVSMARAVYSNSD  760 (1622)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCC
Confidence            46777 44   99999999886

>KOG0979|consensus

Probab=99.63  E-value=5.9e-15  Score=121.56  Aligned_cols=136  Identities=26%  Similarity=0.443  Sum_probs=106.6

Q ss_pred             EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |.+|+++||.+|....  ..+.+.++.|+||||+||||+..|||..++..   -|+-.-.  .+++.++.    ....|.
T Consensus        22 IvrI~l~NF~Ty~~~e--~~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~V--geyIK~G~----~~g~IE   93 (1072)
T KOG0979|consen   22 IVRIELHNFLTYDHTE--FLPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKV--GEYIKRGE----DEGYIE   93 (1072)
T ss_pred             eEEEEEeeeeeeeeee--ecCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHH--HHHHhcCC----ccceEE
Confidence            5579999999997765  24668999999999999999999999888654   2322222  25566554    445677


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP  157 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p  157 (159)
                      +..-+.           ..++++.+.|.....+.|++|+...+++.+.++.+.++++.+|++++++|..++.+.-..|
T Consensus        94 I~l~~~-----------~e~~~ItR~I~~~k~S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~p  160 (1072)
T KOG0979|consen   94 IELKDK-----------DETLTITRLISRDKESKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSP  160 (1072)
T ss_pred             EEEecC-----------CCceEEEEEEeecCCcceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCCh
Confidence            666542           2356888888887778899999999999999999999999999999999998877776665

>PLN03140 ABC transporter G family member; Provisional

Probab=99.63  E-value=5.3e-17  Score=142.23  Aligned_cols=137  Identities=12%  Similarity=0.101  Sum_probs=96.7

Q ss_pred             EEEEeCe-eeec-------------CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC--cccchhhhhHHH
Q psy17514          5 SMVLDGF-KSYG-------------TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI--QVKQVRANTLQE   63 (159)
Q Consensus         5 ~l~l~~~-~~~~-------------~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~--~~g~i~~~~~~~   63 (159)
                      .+.++|+ ..++             .+.+|++++     |++++|+|||||||||||++|+|...+  ..|++.++|. +
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~-~  945 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF-P  945 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc-c
Confidence            3677777 5542             346888888     689999999999999999999998753  5788988872 2


Q ss_pred             HHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC---EEeCHHHHHHHHHhcCccc--C
Q psy17514         64 LIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING---SSVNPKRVSDLFSSVNLNV--N  138 (159)
Q Consensus        64 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~--~  138 (159)
                      ..     ....++.++|++|++         .+++.+||+|++.+...  .+...   .....+.+.++++.++|..  +
T Consensus       946 ~~-----~~~~~~~igyv~Q~d---------~~~~~lTV~E~L~~~a~--lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~ 1009 (1470)
T PLN03140        946 KK-----QETFARISGYCEQND---------IHSPQVTVRESLIYSAF--LRLPKEVSKEEKMMFVDEVMELVELDNLKD 1009 (1470)
T ss_pred             CC-----hHHhhhheEEEcccc---------ccCCCCcHHHHHHHHHH--hCCCCCCCHHHHHHHHHHHHHHCCChhHhC
Confidence            10     011345689999985         46778899999987532  11111   1112345788999999975  2


Q ss_pred             CC------eeEEe-Ch---hHhHhhcCCCC
Q psy17514        139 NP------HFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       139 ~~------~~l~~-q~---~ia~~l~~~p~  158 (159)
                      ..      ..+|+ |+   .||++|+.+|+
T Consensus      1010 ~~vg~~~~~~LSgGerkRvsIa~aL~~~P~ 1039 (1470)
T PLN03140       1010 AIVGLPGVTGLSTEQRKRLTIAVELVANPS 1039 (1470)
T ss_pred             CccCCCCCCCcCHHHHHHHHHHHHHhhCCC
Confidence            22      35777 44   99999999996

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.62  E-value=7.6e-16  Score=107.55  Aligned_cols=52  Identities=23%  Similarity=0.230  Sum_probs=45.6

Q ss_pred             eCe-eeecCCeeeecC----CCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514          9 DGF-KSYGTRVEINDF----DREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus         9 ~~~-~~~~~~~~l~~~----~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      .|+ +.|++..++.+.    .+++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus         4 ~~l~~~~~~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g   60 (177)
T cd03222           4 PDCVKRYGVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG   60 (177)
T ss_pred             CCeEEEECCEEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC
Confidence            577 889887777654    2799999999999999999999999999999998865

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.62  E-value=3.1e-16  Score=138.52  Aligned_cols=119  Identities=15%  Similarity=0.140  Sum_probs=88.5

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .++++|+ ..|++  ..+|++++     |++++|+||||||||||+++|.|.++|++|++.+++                
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------------  699 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----------------  699 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----------------
Confidence            5889999 89964  46788887     799999999999999999999999999999997653                


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc--------------cCCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN--------------VNNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--------------~~~~~~  142 (159)
                      .|+|++|++         .++ +.|+++|+.++..  +       ..++..++++..++.              .+....
T Consensus       700 ~i~yv~Q~~---------~l~-~~Ti~eNI~~g~~--~-------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~  760 (1522)
T TIGR00957       700 SVAYVPQQA---------WIQ-NDSLRENILFGKA--L-------NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVN  760 (1522)
T ss_pred             EEEEEcCCc---------ccc-CCcHHHHhhcCCc--c-------CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCC
Confidence            489999986         233 3599999998632  1       122333333222211              134667


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   ++||++..+|+
T Consensus       761 LSGGQkqRiaLARAl~~~~~  780 (1522)
T TIGR00957       761 LSGGQKQRVSLARAVYSNAD  780 (1522)
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            887 44   99999999986

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.61  E-value=2.7e-16  Score=138.68  Aligned_cols=120  Identities=15%  Similarity=0.140  Sum_probs=92.4

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .++++|+ .+|+.   .++|++++     |+.++|+||+|||||||+++|.|.++|.+|.+..               .+
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~---------------~~  678 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV---------------IR  678 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE---------------ec
Confidence            4889999 89964   46788888     7899999999999999999999999998876531               34


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~  141 (159)
                      ..|+|++|+|         .+++ -|+++||.++.         +..++++.++++..++..              +.-.
T Consensus       679 ~~Iayv~Q~p---------~Lf~-gTIreNI~fg~---------~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~  739 (1495)
T PLN03232        679 GSVAYVPQVS---------WIFN-ATVRENILFGS---------DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGV  739 (1495)
T ss_pred             CcEEEEcCcc---------cccc-ccHHHHhhcCC---------ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCc
Confidence            5799999996         2443 49999999873         124566777777666532              2334


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      .||+ |+   ++|||+..+|+
T Consensus       740 ~LSGGQkQRIaLARAly~~~~  760 (1495)
T PLN03232        740 NISGGQKQRVSMARAVYSNSD  760 (1495)
T ss_pred             ccCHHHHHHHHHHHHHhcCCC
Confidence            6777 44   99999999986

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.59  E-value=9.1e-17  Score=140.72  Aligned_cols=127  Identities=11%  Similarity=0.038  Sum_probs=89.5

Q ss_pred             CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh----CCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCC
Q psy17514         17 RVEINDFD-----REFNAITGLNGTGKSNILDGICFVL----GIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDK   87 (159)
Q Consensus        17 ~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~   87 (159)
                      +++|++++     |++++|+|||||||||||++|+|..    .+.+|+|.++| .++....   ...++.+++++|++  
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G-~~~~~~~---~~~r~~i~yv~Q~d--  147 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG-ITPEEIK---KHYRGDVVYNAETD--  147 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECC-EehHHHH---hhcCceeEEecccc--
Confidence            45788887     6899999999999999999999986    46799999988 3332111   11345699999984  


Q ss_pred             CCCCCCccCCCeEEEEEEEEcCCceEEEE-----CCEE--eCHHH-HHHHHHhcCccc--C------CCeeEEe-Ch---
Q psy17514         88 KNCPIGYENDNTIVICRQISIPSNTRYMI-----NGSS--VNPKR-VSDLFSSVNLNV--N------NPHFLIM-QG---  147 (159)
Q Consensus        88 ~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-----~~~~--~~~~~-~~~~l~~~~l~~--~------~~~~l~~-q~---  147 (159)
                             .+++.+||.|++.++..  ++.     .+..  ...++ ++++++.++|.+  +      .+..+|+ |+   
T Consensus       148 -------~~~~~lTV~E~l~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRv  218 (1394)
T TIGR00956       148 -------VHFPHLTVGETLDFAAR--CKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRV  218 (1394)
T ss_pred             -------ccCCCCCHHHHHHHHHH--hCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHH
Confidence                   46788999999987532  111     0111  11123 356789999975  1      1345777 43   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      .||++|+.+|+
T Consensus       219 sIA~aL~~~p~  229 (1394)
T TIGR00956       219 SIAEASLGGAK  229 (1394)
T ss_pred             HHHHHHHhCCC
Confidence            99999999985

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.59  E-value=1.8e-14  Score=102.48  Aligned_cols=124  Identities=27%  Similarity=0.365  Sum_probs=80.5

Q ss_pred             EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514          3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK-QVRANTLQELIYKNGQAGVTKASVTLT   81 (159)
Q Consensus         3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~~~~~~~~~~~~~~~~~~~~~i~~v   81 (159)
                      +..|+++||++|.+..  .+++.++++|+|||||||||||++|+.++..... ..+...+.++++.+.    ....|.++
T Consensus         1 i~~l~l~nfr~~~~~~--l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~----~~~~i~~~   74 (198)
T cd03276           1 IESITLKNFMCHRHLQ--IEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGE----SSAKITVT   74 (198)
T ss_pred             CeEEEEeCccceeeeE--EecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCC----CeEEEEEE
Confidence            3579999999997654  3577889999999999999999999988765532 122222345554322    35779999


Q ss_pred             EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEe-Ch---hHhHhh----
Q psy17514         82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIM-QG---RVTKVL----  153 (159)
Q Consensus        82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-q~---~ia~~l----  153 (159)
                      |++.+         +++      |   .    .    ......++.++++.-......+..+|+ |+   +||+++    
T Consensus        75 ~~~~~---------~~~------~---~----~----~~~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~  128 (198)
T cd03276          75 LKNQG---------LDA------N---P----L----CVLSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWE  128 (198)
T ss_pred             EEcCC---------ccC------C---c----C----CHHHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhc
Confidence            98852         222      1   0    0    111245777888773223356777777 43   888887    


Q ss_pred             cCCCC
Q psy17514        154 NMKPH  158 (159)
Q Consensus       154 ~~~p~  158 (159)
                      +.+|+
T Consensus       129 ~~~p~  133 (198)
T cd03276         129 VMESP  133 (198)
T ss_pred             ccCCC
Confidence            46664

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.59  E-value=1.1e-14  Score=104.68  Aligned_cols=51  Identities=45%  Similarity=0.839  Sum_probs=46.8

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      |.+..|+++||++|++..++++++.++++|+|||||||||++++|..+.+.
T Consensus         1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~   51 (212)
T cd03274           1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGF   51 (212)
T ss_pred             CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence            778899999999999999998999999999999999999999999866543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.58  E-value=5.8e-17  Score=116.52  Aligned_cols=104  Identities=11%  Similarity=0.014  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchh-hhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVR-ANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVIC  103 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~-~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~  103 (159)
                      +++++|+||||||||||+++|+|+.+|++|++. +.+ ..            ..++   +.+         .+++.+|+.
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~-~~------------~~~~---~~~---------~l~~~ltv~   67 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRG-DA------------LPLG---ANS---------FILPGLTGE   67 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecC-ce------------eccc---ccc---------ccCCcCcHH
Confidence            789999999999999999999999999999986 443 10            0111   121         366778999


Q ss_pred             EEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        104 RQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       104 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+.+...  ..  +.. ..+....+.+.++|..   ..+..+|+ |+   ++|++++.+|+
T Consensus        68 enl~~~~~--~~--~~~-~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~  124 (213)
T PRK15177         68 ENARMMAS--LY--GLD-GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCR  124 (213)
T ss_pred             HHHHHHHH--Hc--CCC-HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCC
Confidence            99876432  11  111 1112223345556653   34556666 33   99999999985

>PLN03140 ABC transporter G family member; Provisional

Probab=99.57  E-value=4e-16  Score=136.80  Aligned_cols=128  Identities=10%  Similarity=0.091  Sum_probs=90.1

Q ss_pred             CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCC
Q psy17514         16 TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDK   87 (159)
Q Consensus        16 ~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~   87 (159)
                      .+++|++++     |++++|+|||||||||||++|+|.+.++   +|+|.++| .++...     ..++.++|++|++  
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG-~~~~~~-----~~~~~i~yv~Q~d--  248 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNG-YRLNEF-----VPRKTSAYISQND--  248 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECC-Eechhh-----cccceeEEecccc--
Confidence            456788888     6899999999999999999999999887   89999988 332111     1246799999984  


Q ss_pred             CCCCCCccCCCeEEEEEEEEcCCceE-----EEE-CC--EEe--------C----------------HHHHHHHHHhcCc
Q psy17514         88 KNCPIGYENDNTIVICRQISIPSNTR-----YMI-NG--SSV--------N----------------PKRVSDLFSSVNL  135 (159)
Q Consensus        88 ~~~~~~~~~~~~~tv~~~i~~~~~~~-----~~~-~~--~~~--------~----------------~~~~~~~l~~~~l  135 (159)
                             .+++++||+|++.+...-.     +.. ..  ..+        .                ...++++++.+||
T Consensus       249 -------~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL  321 (1470)
T PLN03140        249 -------VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL  321 (1470)
T ss_pred             -------cCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCC
Confidence                   4678899999998753200     000 00  000        0                0124668899999


Q ss_pred             cc--------CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        136 NV--------NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       136 ~~--------~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      ..        .....+|+ |+   .||++++.+|+
T Consensus       322 ~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~  356 (1470)
T PLN03140        322 DICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK  356 (1470)
T ss_pred             ccccCceeCCccccCCCcccceeeeehhhhcCCCc
Confidence            74        12346777 44   99999999885

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.56  E-value=1.5e-15  Score=133.96  Aligned_cols=106  Identities=15%  Similarity=0.127  Sum_probs=76.9

Q ss_pred             eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCC
Q psy17514         18 VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPI   92 (159)
Q Consensus        18 ~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~   92 (159)
                      .+|.+++     |++++|+|||||||||||++|.|+++|+.|+|.++|                .|+|++|++       
T Consensus       440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----------------~iayv~Q~~-------  496 (1490)
T TIGR01271       440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----------------RISFSPQTS-------  496 (1490)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----------------EEEEEeCCC-------
Confidence            4677777     789999999999999999999999999999998754                489999986       


Q ss_pred             CccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHH---------HhcCccc-----CCCeeEEe-Ch---hHhHhhc
Q psy17514         93 GYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLF---------SSVNLNV-----NNPHFLIM-QG---RVTKVLN  154 (159)
Q Consensus        93 ~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~l~~-----~~~~~l~~-q~---~ia~~l~  154 (159)
                        .+++ .|+++||.++..  +  +.     .++.+++         +.+...+     .....||+ |+   ++|||+.
T Consensus       497 --~l~~-~Ti~eNI~~g~~--~--~~-----~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~  564 (1490)
T TIGR01271       497 --WIMP-GTIKDNIIFGLS--Y--DE-----YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVY  564 (1490)
T ss_pred             --ccCC-ccHHHHHHhccc--c--ch-----HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHH
Confidence              3455 499999998732  1  11     1222222         2222111     24567777 44   9999999


Q ss_pred             CCCC
Q psy17514        155 MKPH  158 (159)
Q Consensus       155 ~~p~  158 (159)
                      .+|+
T Consensus       565 ~~~~  568 (1490)
T TIGR01271       565 KDAD  568 (1490)
T ss_pred             cCCC
Confidence            9986

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK00064 recF recombination protein F; Reviewed

Probab=99.56  E-value=5.9e-14  Score=108.23  Aligned_cols=118  Identities=21%  Similarity=0.335  Sum_probs=80.4

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |++..|+++||++|.+..  ..++.++++|+|||||||||||++|+.+....  +.+.....++++.+.    ....|..
T Consensus         1 M~i~~l~i~nfr~~~~~~--l~~~~~~~~i~G~NgsGKT~lleai~~l~~~~--s~r~~~~~~li~~g~----~~~~v~~   72 (361)
T PRK00064          1 MYLTRLSLTDFRNYEELD--LELSPGVNVLVGENGQGKTNLLEAIYLLAPGR--SHRTARDKELIRFGA----EAAVIHG   72 (361)
T ss_pred             CEEEEEEEeCCCcccceE--EEecCCeEEEECCCCCCHHHHHHHHHHhCCCC--CccCCChhHHHhcCC----CcEEEEE
Confidence            889999999999998755  35778999999999999999999999987554  334444456666543    3456777


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEe-CHHHHHHHHHhcCccc
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSV-NPKRVSDLFSSVNLNV  137 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~  137 (159)
                      .|...+           ...++...+...++..+++|++.. ....+.+++..+.+..
T Consensus        73 ~~~~~~-----------~~~~i~~~~~~~~~~~~~ing~~~~~~~~l~~~~~~v~~~p  119 (361)
T PRK00064         73 RVEKGG-----------RELPLGLEIDKKGGRKVRINGEPQRKLAELAGLLNVVLFTP  119 (361)
T ss_pred             EEEeCC-----------cEEEEEEEEEcCCceEEEECCccccCHHHHhhhccEEEEcc
Confidence            775421           123455554433444688899876 3445555555444443

>PRK01156 chromosome segregation protein; Provisional

Probab=99.54  E-value=1.8e-13  Score=116.32  Aligned_cols=138  Identities=26%  Similarity=0.380  Sum_probs=92.0

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |.+..|.+.||++|++..  .+|+.++++|+|+|||||||+|+||++++...   .+.....++++.+.    ..+.|.+
T Consensus         1 M~i~~l~l~NF~s~~~~~--i~f~~gi~~I~G~NGsGKSsileAI~~aL~g~---~~~~~~~~~i~~~~----~~~~V~l   71 (895)
T PRK01156          1 MIIKRIRLKNFLSHDDSE--IEFDTGINIITGKNGAGKSSIVDAIRFALFTD---KRTEKIEDMIKKGK----NNLEVEL   71 (895)
T ss_pred             CeEEEEEEeCccCCCCce--EecCCCeEEEECCCCCCHHHHHHHHHHHHcCC---cccccHHHHhhCCC----CeEEEEE
Confidence            889999999999998765  46888999999999999999999999877533   12222245554332    3577888


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCc-----eEEEECCEEeC--HHHHHHHH--HhcCcccC--CCeeEEeChhH
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSN-----TRYMINGSSVN--PKRVSDLF--SSVNLNVN--NPHFLIMQGRV  149 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~-----~~~~~~~~~~~--~~~~~~~l--~~~~l~~~--~~~~l~~q~~i  149 (159)
                      .|...+           ..++|.+.+.....     ..+..+|....  ...+.+.+  ..++++.+  ...-+++||.+
T Consensus        72 ~f~~~g-----------~~y~i~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~  140 (895)
T PRK01156         72 EFRIGG-----------HVYQIRRSIERRGKGSRREAYIKKDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEM  140 (895)
T ss_pred             EEEECC-----------EEEEEEEEEecCCCCCCceEEEecCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccch
Confidence            887532           23567776643221     22444665433  23556655  46777652  23445669998


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      ..++.++|.
T Consensus       141 ~~l~~~~~~  149 (895)
T PRK01156        141 DSLISGDPA  149 (895)
T ss_pred             HHHHhCCHH
Confidence            888877774

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.54  E-value=7.5e-15  Score=117.40  Aligned_cols=124  Identities=21%  Similarity=0.276  Sum_probs=91.2

Q ss_pred             EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .++++|+ +.|++ +.++.+++     ++-++|+||||+||||||+.|.|...|.+|.|.+..              ...
T Consensus       321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~--------------~v~  386 (530)
T COG0488         321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE--------------TVK  386 (530)
T ss_pred             eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC--------------ceE
Confidence            4889999 99966 57888888     688999999999999999999999999999887642              357


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCe-eEEe-Ch---hH
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPH-FLIM-QG---RV  149 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~-~l~~-q~---~i  149 (159)
                      ++|..|+..        .++++.|+.+++.-..        ....+..+...|..+++..   ..|. .||+ |+   .+
T Consensus       387 igyf~Q~~~--------~l~~~~t~~d~l~~~~--------~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~L  450 (530)
T COG0488         387 IGYFDQHRD--------ELDPDKTVLEELSEGF--------PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLL  450 (530)
T ss_pred             EEEEEehhh--------hcCccCcHHHHHHhhC--------ccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHH
Confidence            999999742        2234445555543321        1111678999999999976   3444 5555 44   78


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |+++...|.
T Consensus       451 a~ll~~~pN  459 (530)
T COG0488         451 AKLLLQPPN  459 (530)
T ss_pred             HHHhccCCC
Confidence            888877764

>KOG0250|consensus

Probab=99.53  E-value=1.2e-13  Score=115.06  Aligned_cols=148  Identities=30%  Similarity=0.456  Sum_probs=115.0

Q ss_pred             EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514          3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTLQELIYKNGQAGVTKASVTLT   81 (159)
Q Consensus         3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~i~~v   81 (159)
                      +.++.+.||.|+.+..  ..+...++.|+|+||||||-+|-||+..++.. +++-|...+++++..+.    ..+.|.+.
T Consensus        42 I~sI~L~NFMCHsnL~--IeFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~----~~A~IsIt  115 (1074)
T KOG0250|consen   42 IESIHLTNFMCHSNLL--IEFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGC----SSAKISIT  115 (1074)
T ss_pred             EEEEEEeeecccccce--eccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCC----cceEEEEE
Confidence            5689999999998875  56777899999999999999999999988876 56778888899987554    57889999


Q ss_pred             EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE---CCEEeC--HHHHHHHHHhcCcccCCCeeEEeChhHhHhhc-C
Q psy17514         82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI---NGSSVN--PKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLN-M  155 (159)
Q Consensus        82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~---~~~~~~--~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~-~  155 (159)
                      ..+.+...++.+ .+.+.++|.+.|...+..++..   +|+.++  .+++..+++.++|+..||..+++|.+-.++|. .
T Consensus       116 L~N~G~~Afk~e-iyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~  194 (1074)
T KOG0250|consen  116 LSNSGLDAFKPE-IYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANS  194 (1074)
T ss_pred             EecCCcccCChh-hcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcC
Confidence            988765544432 2456789999998866544433   344333  56789999999999999999999987666663 3


Q ss_pred             CC
Q psy17514        156 KP  157 (159)
Q Consensus       156 ~p  157 (159)
                      +|
T Consensus       195 ~p  196 (1074)
T KOG0250|consen  195 NP  196 (1074)
T ss_pred             Ch
Confidence            44

>KOG0061|consensus

Probab=99.53  E-value=1.7e-15  Score=123.44  Aligned_cols=126  Identities=15%  Similarity=0.173  Sum_probs=94.6

Q ss_pred             CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC---cccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCC
Q psy17514         16 TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI---QVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDK   87 (159)
Q Consensus        16 ~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~---~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~   87 (159)
                      .+++|++++     +++.||+||+||||||||++|+|-...   ..|+|.++| +..     .....++..+||.|+.  
T Consensus        42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG-~~~-----~~~~~~~~s~yV~QdD--  113 (613)
T KOG0061|consen   42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG-RPR-----DSRSFRKISGYVQQDD--  113 (613)
T ss_pred             cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC-ccC-----chhhhhheeEEEcccc--
Confidence            367889888     689999999999999999999999864   489999988 221     1122567899999985  


Q ss_pred             CCCCCCccCCCeEEEEEEEEcCCceEEEECC---EEeCHHHHHHHHHhcCccc--CCC------eeEEe-Ch---hHhHh
Q psy17514         88 KNCPIGYENDNTIVICRQISIPSNTRYMING---SSVNPKRVSDLFSSVNLNV--NNP------HFLIM-QG---RVTKV  152 (159)
Q Consensus        88 ~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~--~~~------~~l~~-q~---~ia~~  152 (159)
                             .+++.+||+|++.+...  .+...   +.+..++++++++.++|..  +..      ..+|+ ++   +||.=
T Consensus       114 -------~l~~~LTV~EtL~f~A~--lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E  184 (613)
T KOG0061|consen  114 -------VLLPTLTVRETLRFSAL--LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE  184 (613)
T ss_pred             -------cccccccHHHHHHHHHH--hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH
Confidence                   57899999999988654  44432   2445678999999999985  211      13555 43   88888


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      +..+|.
T Consensus       185 ll~~P~  190 (613)
T KOG0061|consen  185 LLTDPS  190 (613)
T ss_pred             HHcCCC
Confidence            888884

>KOG0059|consensus

Probab=99.50  E-value=8.2e-16  Score=129.95  Aligned_cols=140  Identities=14%  Similarity=0.148  Sum_probs=104.0

Q ss_pred             EEEEEeCe-eeecCCe-eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          4 KSMVLDGF-KSYGTRV-EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~-~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      ..+.++|+ +.|+... ++++++     +|+.++.|+|||||||++++|+|...|++|++.+.| .++.. .......++
T Consensus       563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g-~~i~~-~~~~~~~~~  640 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKG-HDITV-STDFQQVRK  640 (885)
T ss_pred             ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEec-Ccccc-ccchhhhhh
Confidence            46889999 9998776 666666     799999999999999999999999999999999876 33321 111122467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC--EEeCHHHHHHHHHhcCccc--CCCe-eEEe-Ch---
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING--SSVNPKRVSDLFSSVNLNV--NNPH-FLIM-QG---  147 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~--~~~~-~l~~-q~---  147 (159)
                      .+||.+|..         .+.+.+|.+|++.+..+    +.|  .....+.+..+++.++|..  +.+. .+|+ ++   
T Consensus       641 ~iGyCPQ~d---------~l~~~lT~rEhL~~~ar----lrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkL  707 (885)
T KOG0059|consen  641 QLGYCPQFD---------ALWEELTGREHLEFYAR----LRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRL  707 (885)
T ss_pred             hcccCCchh---------hhhhhccHHHHHHHHHH----HcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhH
Confidence            899999984         68889999999887533    223  2233456788899999987  3333 3444 33   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      .+|-+++.+|+
T Consensus       708 s~aialig~p~  718 (885)
T KOG0059|consen  708 SFAIALIGDPS  718 (885)
T ss_pred             HHHHHHhcCCC
Confidence            88888888875

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=99.50  E-value=1.1e-13  Score=117.69  Aligned_cols=144  Identities=29%  Similarity=0.375  Sum_probs=90.2

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |++.+|+++||.+|.+..+-.-+..++++|+|||||||||||+||++.+.++.-........++++.+.    ....|.+
T Consensus         1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~~~~~~~~i~~g~----~~~~V~l   76 (908)
T COG0419           1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAFSLDDLIRAGE----KSASVEL   76 (908)
T ss_pred             CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCccchhhhHHHhcCC----ccEEEEE
Confidence            888999999999998655333355799999999999999999999999876622111112245555333    2367888


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCc------eEEEECCEEe--CHHHHHHH-HHhcCcccC--CCeeEEeChhH
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSN------TRYMINGSSV--NPKRVSDL-FSSVNLNVN--NPHFLIMQGRV  149 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~------~~~~~~~~~~--~~~~~~~~-l~~~~l~~~--~~~~l~~q~~i  149 (159)
                      .|+..+.           .+.|.+.+.-...      .....++...  ....+.+. -..+|++.+  ...-+++||.+
T Consensus        77 ~F~~~g~-----------~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe~  145 (908)
T COG0419          77 EFEVNGK-----------KYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEF  145 (908)
T ss_pred             EEEECCE-----------EEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHhH
Confidence            8885431           2455555333221      0011122211  11234443 456788752  23455679999


Q ss_pred             hHhhcCCCCC
Q psy17514        150 TKVLNMKPHE  159 (159)
Q Consensus       150 a~~l~~~p~~  159 (159)
                      +.+|...|+|
T Consensus       146 ~~fl~~~~~e  155 (908)
T COG0419         146 DAFLKSKPKE  155 (908)
T ss_pred             HHHHhcCcHH
Confidence            9999999874

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.50  E-value=9e-16  Score=104.76  Aligned_cols=142  Identities=13%  Similarity=0.112  Sum_probs=92.5

Q ss_pred             EEEEEeCe-eeec-----C--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC
Q psy17514          4 KSMVLDGF-KSYG-----T--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ   70 (159)
Q Consensus         4 ~~l~l~~~-~~~~-----~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~   70 (159)
                      ..|.++|+ |+|-     +  .+++.+++     ||++++-||+|+||||||++|++-+.|++|.|.+....+.+..-..
T Consensus         3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a   82 (235)
T COG4778           3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA   82 (235)
T ss_pred             ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence            35888999 8872     1  24666666     7999999999999999999999999999999877643222211111


Q ss_pred             C-----ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCe
Q psy17514         71 A-----GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPH  141 (159)
Q Consensus        71 ~-----~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~  141 (159)
                      .     ..++..|+||.|.-         ...|..+..+-+.-+..  .+.........++.++|..+++..    -.|.
T Consensus        83 ~pr~vl~vRr~TiGyVSQFL---------RviPRV~aLdVvaePll--~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa  151 (235)
T COG4778          83 EPREVLEVRRTTIGYVSQFL---------RVIPRVSALDVVAEPLL--ARGVPREVARAKAADLLTRLNLPERLWSLAPA  151 (235)
T ss_pred             ChHHHHHHHHhhhHHHHHHH---------HhccCcchHHHHHhHHH--HcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc
Confidence            1     12456789988862         23333333332222211  111122334567889999999975    4788


Q ss_pred             eEEe--Ch--hHhHhhcCC
Q psy17514        142 FLIM--QG--RVTKVLNMK  156 (159)
Q Consensus       142 ~l~~--q~--~ia~~l~~~  156 (159)
                      .+|+  |+  -|||.++.+
T Consensus       152 TFSGGEqQRVNIaRgfivd  170 (235)
T COG4778         152 TFSGGEQQRVNIARGFIVD  170 (235)
T ss_pred             ccCCchheehhhhhhhhcc
Confidence            9998  33  889887654

>PTZ00243 ABC transporter; Provisional

Probab=99.49  E-value=1e-14  Score=128.99  Aligned_cols=114  Identities=14%  Similarity=0.168  Sum_probs=79.4

Q ss_pred             cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCC
Q psy17514         15 GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKN   89 (159)
Q Consensus        15 ~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~   89 (159)
                      +++.+|++++     |++++|+|||||||||||++|.|.+.|++|++.+                +..|+|++|++    
T Consensus       671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~----------------~~~i~yv~Q~~----  730 (1560)
T PTZ00243        671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA----------------ERSIAYVPQQA----  730 (1560)
T ss_pred             CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE----------------CCeEEEEeCCC----
Confidence            4456788877     7899999999999999999999999999998863                13699999986    


Q ss_pred             CCCCccCCCeEEEEEEEEcCCceEEEECCEEeC----HHHHHHHHHhc--Cccc---CCCeeEEe-Ch---hHhHhhcCC
Q psy17514         90 CPIGYENDNTIVICRQISIPSNTRYMINGSSVN----PKRVSDLFSSV--NLNV---NNPHFLIM-QG---RVTKVLNMK  156 (159)
Q Consensus        90 ~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~----~~~~~~~l~~~--~l~~---~~~~~l~~-q~---~ia~~l~~~  156 (159)
                           .++ +.|+.+|+.++..  +.  .....    ...+.+.++.+  |+..   .....||+ |+   ++||++..+
T Consensus       731 -----~l~-~~Tv~enI~~~~~--~~--~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~  800 (1560)
T PTZ00243        731 -----WIM-NATVRGNILFFDE--ED--AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYAN  800 (1560)
T ss_pred             -----ccC-CCcHHHHHHcCCh--hh--HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence                 233 3599999987532  10  00000    01122233333  4432   45677887 44   999999999


Q ss_pred             CC
Q psy17514        157 PH  158 (159)
Q Consensus       157 p~  158 (159)
                      |+
T Consensus       801 p~  802 (1560)
T PTZ00243        801 RD  802 (1560)
T ss_pred             CC
Confidence            86

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.49  E-value=1.2e-12  Score=97.65  Aligned_cols=114  Identities=33%  Similarity=0.518  Sum_probs=78.8

Q ss_pred             EEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEE
Q psy17514          4 KSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFD   83 (159)
Q Consensus         4 ~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q   83 (159)
                      ..|+++||++|.+..  .+++..+++|+|||||||||+|++|+.++....       ..++++.+.    ....|...|.
T Consensus         2 ~~l~i~nf~~~~~~~--i~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~-------~~~~~~~~~----~~~~v~~~~~   68 (276)
T cd03241           2 LELSIKNFALIEELE--LDFEEGLTVLTGETGAGKSILLDALSLLLGGRA-------SADLIRSGA----EKAVVEGVFD   68 (276)
T ss_pred             cEEEEeCccceeeeE--EEeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCC-------hHHHhhCCC----CeEEEEEEEe
Confidence            578999999997654  357889999999999999999999999886541       134444222    3455777776


Q ss_pred             cCCCCCC-CC----CccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHH
Q psy17514         84 NSDKKNC-PI----GYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLF  130 (159)
Q Consensus        84 ~~~~~~~-~~----~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l  130 (159)
                      ....... .+    .....+++++.+.+...+++.|++|++....+.+.++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~Ing~~vsl~~l~~i~  120 (276)
T cd03241          69 ISDEEEAKALLLELGIEDDDDLIIRREISRKGRSRYFINGQSVTLKLLRELG  120 (276)
T ss_pred             cCCchHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEECCEEECHHHHHHHH
Confidence            5432100 00    00112467888888766677899999988777776663

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.49  E-value=5.4e-13  Score=113.33  Aligned_cols=139  Identities=22%  Similarity=0.373  Sum_probs=86.5

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |.+..|.+.||++|.+..  .+++.++++|+|||||||||||++|++.+.....  +.....++++.+.    ....|.+
T Consensus         1 M~i~~l~l~nf~~~~~~~--~~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~--~~~~~~~~~~~~~----~~~~v~~   72 (880)
T PRK02224          1 MRFDRVRLENFKCYADAD--LRLEDGVTVIHGVNGSGKSSLLEACFFALYGSKA--LDDTLDDVITIGA----EEAEIEL   72 (880)
T ss_pred             CeEEEEEEECcccccceE--EecCCCeEEEECCCCCCHHHHHHHHHHHhCCCcc--ccccHHHHHhCCC----CcEEEEE
Confidence            889999999999998765  3577899999999999999999999988765421  1112245554332    3567888


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCc----eEEE-ECCE--EeCHHHHHH-HHHhcCcccC--CCeeEEeChhHh
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSN----TRYM-INGS--SVNPKRVSD-LFSSVNLNVN--NPHFLIMQGRVT  150 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~----~~~~-~~~~--~~~~~~~~~-~l~~~~l~~~--~~~~l~~q~~ia  150 (159)
                      .|...+           ..++|.+.+...+.    ..+. .++.  ......+.. +.+.+|++..  ....+++||.+.
T Consensus        73 ~f~~~~-----------~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~~  141 (880)
T PRK02224         73 WFEHAG-----------GEYHIERRVRLSGDRATTAKCVLETPEGTIDGARDVREEVTELLRMDAEAFVNCAYVRQGEVN  141 (880)
T ss_pred             EEEECC-----------EEEEEEEEEecCCCCcccceeEEeCCCccccChHHHHHHHHHHHCCCHHHhcceeEeeccChH
Confidence            887532           12355555432111    1111 1111  111223333 3445787652  223456799999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      .++...|.
T Consensus       142 ~~l~~~p~  149 (880)
T PRK02224        142 KLINATPS  149 (880)
T ss_pred             HHHcCCHH
Confidence            99988775

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.48  E-value=5.8e-13  Score=99.01  Aligned_cols=100  Identities=22%  Similarity=0.370  Sum_probs=69.9

Q ss_pred             EEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEE
Q psy17514          4 KSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFD   83 (159)
Q Consensus         4 ~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q   83 (159)
                      ..|+++||++|.+..  .+++.++++|+|||||||||++++|..++...+.  +.....++++.+.    ....|...|.
T Consensus         2 ~~l~i~nfr~~~~~~--~~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~~--r~~~~~~~i~~~~----~~~~v~~~f~   73 (270)
T cd03242           2 KSLELRNFRNYAELE--LEFEPGVTVLVGENAQGKTNLLEAISLLATGKSH--RTSRDKELIRWGA----EEAKISAVLE   73 (270)
T ss_pred             cEEEEeCCcCcceeE--EecCCCeEEEECCCCCCHHHHHHHHHHhccCCCC--CCCCHHHHHhcCC----CCEEEEEEEE
Confidence            578999999998654  3577899999999999999999999988875532  2323356665443    3566888886


Q ss_pred             cCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeC
Q psy17514         84 NSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVN  122 (159)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~  122 (159)
                      ..+           ...++...+....++.+++|+....
T Consensus        74 ~~~-----------~~~~i~~~~~~~~~~~~~ing~~~~  101 (270)
T cd03242          74 RQG-----------GELALELTIRSGGGRKARLNGIKVR  101 (270)
T ss_pred             eCC-----------CeEEEEEEEEcCCceEEEECCeecc
Confidence            532           1245666654444556888887764

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=99.48  E-value=3.9e-13  Score=102.25  Aligned_cols=121  Identities=26%  Similarity=0.402  Sum_probs=86.8

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |.+..|.+.||++|....  .++++++++++|+||+|||+||+||+.+....  +.|.....++++.+.    ....|..
T Consensus         1 M~l~~L~L~nFRNy~~~~--l~~~p~~nvl~G~NgqGKTNlLEAI~~l~~gr--S~Rt~~~~~lir~~~----~~~~i~~   72 (363)
T COG1195           1 MYLLSLLLRNFRNYAELD--LDLSPGVNVLVGENGQGKTNLLEAIYLLALGR--SHRTSRDKELIRTGA----DEAEISA   72 (363)
T ss_pred             CceeeeehhhcCCcccce--eccCCCcEEEECCCCCchHHHHHHHHHHcccc--CccccchhHHHhcCC----ccEEEEE
Confidence            788899999999998877  57889999999999999999999999887655  455555467777655    3566777


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCee
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHF  142 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  142 (159)
                      ..|...           ...++...+.-.++...++|+.+.  ....+++..+.+.-..|..
T Consensus        73 ~v~~~~-----------~~~~~~~~~~~~g~~~vring~~~--~~~~el~g~l~~vlf~Ped  121 (363)
T COG1195          73 RVQRKG-----------REGTLGLQISKKGRRRVRINGTKA--RKLAELAGHLNVVLFTPED  121 (363)
T ss_pred             EEeecc-----------ceeeeEEEeccCcceEEEECCccc--ccHHHHhhhCceEEecccc
Confidence            777631           123555665555555678888765  4566777666665444443

>PRK14079 recF recombination protein F; Provisional

Probab=99.46  E-value=1.3e-12  Score=100.39  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=76.4

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |.+..|+++||++|.+..  .+++.++++|+||||+||||||++|+.++..   +.+.....++++.+.    ....|..
T Consensus         1 M~i~~l~l~nfRn~~~~~--l~f~~g~nvi~G~NGsGKT~lLeAI~~~~~g---s~r~~~~~~lI~~g~----~~~~v~~   71 (349)
T PRK14079          1 MRLLSLRQLNYRNLAPPT--LAFPPGVTAVVGENAAGKTNLLEAIYLALTG---ELPNGRLADLVRFGE----GEAWVHA   71 (349)
T ss_pred             CEEEEEEEeccCCcccce--EEeCCCeEEEECCCCCCHHHHHHHHHHHhcC---CCCCCcHHhheecCC----CcEEEEE
Confidence            889999999999998776  3678899999999999999999999887653   455444456665443    2345666


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL  135 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  135 (159)
                      .++..+.           ..++...+.- ....+++|++......+.+++..+-+
T Consensus        72 ~~~~~~~-----------~~~~~~~~~~-~~~~~~ing~~~~~~~l~~~~~~v~~  114 (349)
T PRK14079         72 EVETGGG-----------LSRLEVGLGP-GRRELKLDGVRVSLRELARLPGAVLI  114 (349)
T ss_pred             EEEeCCC-----------eEEEEEEEEc-CceEEEECCeecCHHHHHhhhcEEEE
Confidence            6654311           1122222222 23458889987765566665544444

>KOG0054|consensus

Probab=99.46  E-value=3.5e-14  Score=122.33  Aligned_cols=132  Identities=9%  Similarity=0.117  Sum_probs=96.0

Q ss_pred             EEEEeCe-eeecCC--eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGTR--VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~~--~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ .+|...  .||++++     +|-++|+|+.|||||||+.+|-.+..|.+|+|.++| .|+-.-+ -+ ..|.
T Consensus      1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDg-vdI~~ig-L~-dLRs 1214 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDG-VDISKIG-LH-DLRS 1214 (1381)
T ss_pred             eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcC-eeccccc-HH-HHHh
Confidence            5899999 999754  7889988     688999999999999999999999999999999998 3432211 11 1478


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      ++++++|+|         .+|.. |++.|+.....         ..++++=++|+..+|..              +.-.+
T Consensus      1215 rlsIIPQdP---------vLFsG-TvR~NLDPf~e---------~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N 1275 (1381)
T KOG0054|consen 1215 RLSIIPQDP---------VLFSG-TVRFNLDPFDE---------YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGEN 1275 (1381)
T ss_pred             cCeeeCCCC---------ceecC-ccccccCcccc---------cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCcc
Confidence            899999997         35554 89999875422         13355556666655532              22233


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|- |+   ++||||..+++
T Consensus      1276 ~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1276 FSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred             CChHHHHHHHHHHHHhccCC
Confidence            333 55   99999988765

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.45  E-value=2.4e-14  Score=98.19  Aligned_cols=75  Identities=20%  Similarity=0.303  Sum_probs=55.7

Q ss_pred             EeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514          8 LDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT   81 (159)
Q Consensus         8 l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v   81 (159)
                      ++++ +.|.+..++.+++     +++++|+|+||||||||+++|+|++.++.|++++++. ++...  ........++++
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~-~~~~~--~~~~~~~~i~~~   78 (157)
T cd00267           2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK-DIAKL--PLEELRRRIGYV   78 (157)
T ss_pred             eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE-EcccC--CHHHHHhceEEE
Confidence            5677 7787666777776     6899999999999999999999999999999998872 21100  001124568898


Q ss_pred             EEcC
Q psy17514         82 FDNS   85 (159)
Q Consensus        82 ~q~~   85 (159)
                      +|-+
T Consensus        79 ~qlS   82 (157)
T cd00267          79 PQLS   82 (157)
T ss_pred             eeCC
Confidence            8843

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.45  E-value=1.2e-12  Score=94.18  Aligned_cols=77  Identities=27%  Similarity=0.450  Sum_probs=55.5

Q ss_pred             EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccc-hhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514          3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQ-VRANTLQELIYKNGQAGVTKASVTLT   81 (159)
Q Consensus         3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~-i~~~~~~~~~~~~~~~~~~~~~i~~v   81 (159)
                      +..|+++||++|++.. + +++..+++|+|+||+||||||++|+.++..+... .+.....++++.+.    ....|.+.
T Consensus         3 i~~i~i~nfr~~~~~~-i-~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~----~~~~v~~~   76 (213)
T cd03277           3 IVRIKLENFVTYDETE-F-RPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGC----DEGTIEIE   76 (213)
T ss_pred             eEEEEEeCCCCcceeE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCC----CcEEEEEE
Confidence            6789999999996543 3 5778999999999999999999999998654321 23333345555433    34668877


Q ss_pred             EEcC
Q psy17514         82 FDNS   85 (159)
Q Consensus        82 ~q~~   85 (159)
                      |...
T Consensus        77 ~~~~   80 (213)
T cd03277          77 LYGN   80 (213)
T ss_pred             EEeC
Confidence            7664

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=2.3e-14  Score=109.62  Aligned_cols=132  Identities=15%  Similarity=0.171  Sum_probs=93.9

Q ss_pred             EEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      +.+.++ ..|. .+++|.+++     ++.++++||+|+||||+++.|..++++.+|.|.+++ +++..-..  ...++.|
T Consensus       263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~-qdir~vtq--~slR~aI  339 (497)
T COG5265         263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDG-QDIRDVTQ--QSLRRAI  339 (497)
T ss_pred             EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcc-hhHHHhHH--HHHHHHh
Confidence            566677 7775 466778887     578999999999999999999999999999999998 55532121  2357789


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeEE
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFLI  144 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l~  144 (159)
                      ++|+|+.         .+|.+ |+.-|+.++.        .....+++....+.+.+.+              ..-..+|
T Consensus       340 g~VPQDt---------vLFND-ti~yni~ygr--------~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklS  401 (497)
T COG5265         340 GIVPQDT---------VLFND-TIAYNIKYGR--------PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS  401 (497)
T ss_pred             CcCcccc---------eehhh-hHHHHHhccC--------ccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeecc
Confidence            9999984         44443 6777777653        2334455555555554432              2234455


Q ss_pred             e---Ch-hHhHhhcCCCC
Q psy17514        145 M---QG-RVTKVLNMKPH  158 (159)
Q Consensus       145 ~---q~-~ia~~l~~~p~  158 (159)
                      +   |+ +|||++..+|+
T Consensus       402 ggekqrvaiar~ilk~p~  419 (497)
T COG5265         402 GGEKQRVAIARTILKNPP  419 (497)
T ss_pred             CchHHHHHHHHHHhcCCC
Confidence            5   44 99999999996

>TIGR00618 sbcc exonuclease SbcC

Probab=99.44  E-value=2.4e-13  Score=117.06  Aligned_cols=142  Identities=24%  Similarity=0.343  Sum_probs=82.9

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCC--CeEEEEcCCCCcHHHHHHHHHHHhCCcc---cchhhhhHHHHHHhhCCCceeE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDR--EFNAITGLNGTGKSNILDGICFVLGIQV---KQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~--~~~~liG~NGaGKSTLl~~i~~~~~~~~---g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      |++..|+++||++|.+...+ +|+.  ++++|+|||||||||||++|++.+....   +...... .++..    .....
T Consensus         1 M~~~~L~l~nf~s~~~~~~i-dF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~-~~~~~----~~~~~   74 (1042)
T TIGR00618         1 MKPLRLTLKNFGSYKGTHTI-DFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSL-NSLYA----APSEA   74 (1042)
T ss_pred             CeeeEEEEeCeeccCCCcee-eecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCcccccc-chhhc----CCCCC
Confidence            88999999999999876544 5765  8999999999999999999999985431   1111000 11111    11123


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCC-----ceE---E---EE-CCE--EeCHHHHHH-HHHhcCcccC--
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPS-----NTR---Y---MI-NGS--SVNPKRVSD-LFSSVNLNVN--  138 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~-----~~~---~---~~-~~~--~~~~~~~~~-~l~~~~l~~~--  138 (159)
                      ..|.+.|...+.           .+.|.+.+....     ...   +   .. .+.  ....+.+.+ +.+.+||+.+  
T Consensus        75 ~~v~l~F~~~g~-----------~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F  143 (1042)
T TIGR00618        75 AFAELEFSLGTK-----------IYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTF  143 (1042)
T ss_pred             eEEEEEEEECCE-----------EEEEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHH
Confidence            456677754321           123333222100     000   0   00 011  011234555 4457898763  


Q ss_pred             CCeeEEeChhHhHhhcCCCCC
Q psy17514        139 NPHFLIMQGRVTKVLNMKPHE  159 (159)
Q Consensus       139 ~~~~l~~q~~ia~~l~~~p~~  159 (159)
                      ....+++||.++.++.++|+|
T Consensus       144 ~~~~~l~Qg~~~~fl~a~~~e  164 (1042)
T TIGR00618       144 TRVVLLPQGEFAQFLKAKSKE  164 (1042)
T ss_pred             hhheeecccchHHHHhCCHHH
Confidence            344567799999999888864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.43  E-value=9.7e-16  Score=111.38  Aligned_cols=121  Identities=21%  Similarity=0.232  Sum_probs=74.7

Q ss_pred             eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCC
Q psy17514         19 EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIG   93 (159)
Q Consensus        19 ~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~   93 (159)
                      ++.++|     |++++++|||||||||+|++|+|++.|++|.+++.|..+..+..    ..-+.+++|+-.-        
T Consensus        39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~----~~~~~~~~v~gqk--------  106 (325)
T COG4586          39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRRE----EYLRSIGLVMGQK--------  106 (325)
T ss_pred             hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHH----HHHHHHHHHhhhh--------
Confidence            445666     68999999999999999999999999999999999854432111    1123455554221        


Q ss_pred             ccCCCeEEEEEEEEcCCc-----eEEEECCEEeCHHHHHHHHHhcCccc--CCCe-eEEe-Ch---hHhHhhcCCCC
Q psy17514         94 YENDNTIVICRQISIPSN-----TRYMINGSSVNPKRVSDLFSSVNLNV--NNPH-FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus        94 ~~~~~~~tv~~~i~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~-~l~~-q~---~ia~~l~~~p~  158 (159)
                            ...++-+.....     --|.+.+.. =.++...+.+.++|..  ..|. .+|. |+   ++|.+|..+|+
T Consensus       107 ------~ql~Wdlp~~ds~~v~~~Iy~Ipd~~-F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~  176 (325)
T COG4586         107 ------LQLWWDLPALDSLEVLKLIYEIPDDE-FAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPK  176 (325)
T ss_pred             ------heeeeechhhhhHHHHHHHHhCCHHH-HHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCc
Confidence                  112111111000     012221111 1356777788888884  4443 4444 65   99999999886

>PRK03918 chromosome segregation protein; Provisional

Probab=99.41  E-value=4e-12  Score=108.06  Aligned_cols=139  Identities=23%  Similarity=0.343  Sum_probs=83.3

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK-QVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |.+..|.+.||++|.+..  .+++.++++|+|||||||||++++|++++....+ ..+.....++++.+.    ..+.|.
T Consensus         1 m~i~~l~i~nf~~~~~~~--i~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~v~   74 (880)
T PRK03918          1 MKIEELKIKNFRSHKSSV--VEFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGG----SGTEIE   74 (880)
T ss_pred             CeeEEEEEeCccCccCce--EecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCC----CCEEEE
Confidence            889999999999998754  3577899999999999999999999988764322 122111134443222    356778


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCE---EeCHHHHHHHHHh-cCcccCCCeeEEeChhHhHhhc
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGS---SVNPKRVSDLFSS-VNLNVNNPHFLIMQGRVTKVLN  154 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~---~~~~~~~~~~l~~-~~l~~~~~~~l~~q~~ia~~l~  154 (159)
                      +.|...+           ..++|.+.+..+.. .+.. ++.   ....+.+.+.+.. ++........+++||.+..++.
T Consensus        75 ~~f~~~~-----------~~~~i~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~~~  142 (880)
T PRK03918         75 LKFEKNG-----------RKYRIVRSFNRGES-YLKYLDGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAILE  142 (880)
T ss_pred             EEEEECC-----------eEEEEEEEEcCCce-EEEECCCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHHhc
Confidence            8886532           13466665543322 2222 221   1223445555544 2222122334567999988864


Q ss_pred             CCCC
Q psy17514        155 MKPH  158 (159)
Q Consensus       155 ~~p~  158 (159)
                       .|.
T Consensus       143 -~~~  145 (880)
T PRK03918        143 -SDE  145 (880)
T ss_pred             -CcH
Confidence             564

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.41  E-value=3.4e-13  Score=94.10  Aligned_cols=39  Identities=21%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         18 VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        18 ~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      .+++++|     +++++|+|||||||||||++|.    +++|++++.+
T Consensus         9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~   52 (176)
T cd03238           9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLIS   52 (176)
T ss_pred             eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECC
Confidence            3455555     7899999999999999999984    2567666543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00634 recN DNA repair protein RecN

Probab=99.41  E-value=6e-12  Score=102.23  Aligned_cols=118  Identities=22%  Similarity=0.376  Sum_probs=84.8

Q ss_pred             eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514          2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT   81 (159)
Q Consensus         2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v   81 (159)
                      |+..|.++||+.|....  .+++.++++|+||||||||+||++|..+++...       ..++++.+.    ....|..+
T Consensus         1 Ml~~l~i~nf~~~~~~~--i~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~-------~~~~i~~~~----~~~~v~~~   67 (563)
T TIGR00634         1 MLTELRINNFALIRVLT--VEFERGLTVLTGETGAGKSMIIDALSLLGGQRA-------GASRVRSGE----NRAVVEGR   67 (563)
T ss_pred             CceEEEEcceeeeeeeE--EecCCCeEEEECCCCCCHHHHHHHHHHHhCcCc-------hHHHhcCCC----CeEEEEEE
Confidence            47789999999997765  458889999999999999999999999876441       124444332    45678888


Q ss_pred             EEcCCCCC------CCCCccC---CCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHh
Q psy17514         82 FDNSDKKN------CPIGYEN---DNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSS  132 (159)
Q Consensus        82 ~q~~~~~~------~~~~~~~---~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~  132 (159)
                      |..+....      ...+...   .+.+.+.+.+...+++.+++|+..+....+.++...
T Consensus        68 f~~~~~~~~~~~~l~~~~~~~~~~~~~~ii~R~i~~~grs~~~iNg~~v~~~~l~~l~~~  127 (563)
T TIGR00634        68 FTTESLDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYLNGKPVSASSLLEFTSE  127 (563)
T ss_pred             EccCCCchHHHHHHHhcCCCcCCCCCeEEEEEEEcCCCceEEEECCEEccHHHHHHHhcC
Confidence            87543210      0011111   235678888887778889999999988888888753

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=99.39  E-value=1.1e-12  Score=75.41  Aligned_cols=49  Identities=37%  Similarity=0.515  Sum_probs=40.3

Q ss_pred             EEEEEEeCeeeecCCeeeecCC--CCeEEEEcCCCCcHHHHHHHHHHHhCCcc
Q psy17514          3 IKSMVLDGFKSYGTRVEINDFD--REFNAITGLNGTGKSNILDGICFVLGIQV   53 (159)
Q Consensus         3 ~~~l~l~~~~~~~~~~~l~~~~--~~~~~liG~NGaGKSTLl~~i~~~~~~~~   53 (159)
                      +++|++.|+..|....  .+++  +.++.|+|||||||||||+||..++-+..
T Consensus         1 L~rl~L~Nw~~f~~~~--~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen    1 LTRLQLVNWGSFDGET--IDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             CcEEEEeccCccCCeE--EeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            3578999998887744  3455  46999999999999999999999988764

>KOG0054|consensus

Probab=99.39  E-value=4e-13  Score=115.99  Aligned_cols=119  Identities=17%  Similarity=0.174  Sum_probs=93.4

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .++++|. .+|+.   .+.|++++     |++++|+|+-|||||+||.+|.|-+...+|++.+.|               
T Consensus       518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g---------------  582 (1381)
T KOG0054|consen  518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG---------------  582 (1381)
T ss_pred             eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---------------
Confidence            5778888 78864   33678887     789999999999999999999999999999887765               


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~  141 (159)
                       .++|++|.|          ...+-||+|||.|+.         +-.++++++.++...|..              ++-.
T Consensus       583 -siaYv~Q~p----------WI~ngTvreNILFG~---------~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi  642 (1381)
T KOG0054|consen  583 -SVAYVPQQP----------WIQNGTVRENILFGS---------PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGI  642 (1381)
T ss_pred             -eEEEecccc----------HhhCCcHHHhhhcCc---------cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc
Confidence             389999985          334459999999974         335577777777766643              3556


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      +||| |+   ++|||+..+.+
T Consensus       643 nLSGGQKqRIsLARAVY~~ad  663 (1381)
T KOG0054|consen  643 NLSGGQKQRISLARAVYQDAD  663 (1381)
T ss_pred             CCcHhHHHHHHHHHHHhccCC
Confidence            7888 55   99999987764

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.39  E-value=1.9e-12  Score=90.60  Aligned_cols=80  Identities=46%  Similarity=0.691  Sum_probs=53.5

Q ss_pred             EEEEEeCeeeecCCeeeecCCCC-eEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEE
Q psy17514          4 KSMVLDGFKSYGTRVEINDFDRE-FNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTF   82 (159)
Q Consensus         4 ~~l~l~~~~~~~~~~~l~~~~~~-~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~   82 (159)
                      ..++++||++|.+..+.  ..+. +++|+||||+||||+|++|+.++...+-..+......+.+..-......+.|.++|
T Consensus         2 ~~i~l~nf~~~~~~~~~--~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f   79 (178)
T cd03239           2 KQITLKNFKSYRDETVV--GGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITF   79 (178)
T ss_pred             cEEEEECccCCCCCEEe--cCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEE
Confidence            57899999999887643  2334 99999999999999999999988765333222221111111112233567888888


Q ss_pred             EcC
Q psy17514         83 DNS   85 (159)
Q Consensus        83 q~~   85 (159)
                      .+.
T Consensus        80 ~~~   82 (178)
T cd03239          80 DKS   82 (178)
T ss_pred             ECc
Confidence            774

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>PRK10869 recombination and repair protein; Provisional

Probab=99.38  E-value=1e-11  Score=100.49  Aligned_cols=119  Identities=24%  Similarity=0.340  Sum_probs=84.2

Q ss_pred             eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514          2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT   81 (159)
Q Consensus         2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v   81 (159)
                      |+..|.++||+.|....  .+++.++++|+||||||||+|+++|+.+++...     .  .++++.+.    ..+.|..+
T Consensus         1 ML~~L~I~nf~~i~~~~--i~f~~glnvitGetGaGKS~ildAi~~llG~r~-----~--~~~ir~g~----~~a~Ve~~   67 (553)
T PRK10869          1 MLAQLTISNFAIVRELE--IDFQSGMTVITGETGAGKSIAIDALGLCLGGRA-----E--ASMVRPGA----TRADLCAR   67 (553)
T ss_pred             CccEEEEcccccceeeE--EecCCCcEEEECCCCCChHHHHHHHHHHhCCCc-----c--cccccCCC----CcEEEEEE
Confidence            47789999998887655  468899999999999999999999999985331     1  13333222    46778888


Q ss_pred             EEcCCCCC-----CCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhc
Q psy17514         82 FDNSDKKN-----CPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSV  133 (159)
Q Consensus        82 ~q~~~~~~-----~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~  133 (159)
                      |..++...     ...+......+.+.+.+...+++.+++|+.......+.++.+.+
T Consensus        68 F~~~~~~~~~~~l~~~~~~~~~~~~i~R~i~~~g~s~~~INg~~v~~~~l~~l~~~l  124 (553)
T PRK10869         68 FSLKDTPAALRWLEDNQLEDGNECLLRRVISSDGRSRGFINGTPVPLSQLRELGQLL  124 (553)
T ss_pred             EecCCChHHHHHHHhcCCCCCCeEEEEEEEecCCcceEEECCeeccHHHHHHHHHhh
Confidence            87533210     00111112356788888777778899999999888888887655

>TIGR00611 recf recF protein

Probab=99.38  E-value=8.9e-12  Score=96.21  Aligned_cols=76  Identities=24%  Similarity=0.369  Sum_probs=58.6

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |.+..|+++||++|.+..  .+++.++++|+|||||||||||++|+.+....+  .+.....++++.+.    ....|..
T Consensus         1 M~l~~L~i~nFR~~~~~~--l~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s--~R~~~~~~li~~g~----~~~~v~~   72 (365)
T TIGR00611         1 MYLSRLELTDFRNYDAVD--LELSPGVNVIVGPNGQGKTNLLEAIYYLALGRS--HRTSRDKPLIRFGA----EAFVIEG   72 (365)
T ss_pred             CEEEEEEEeCCcceeeeE--EEECCCeEEEECCCCCCHHHHHHHHHHHcccCC--ccccchhhHHhCCC----CeEEEEE
Confidence            889999999999997755  347788999999999999999999998876543  44444456666543    3566777


Q ss_pred             EEEc
Q psy17514         81 TFDN   84 (159)
Q Consensus        81 v~q~   84 (159)
                      .|..
T Consensus        73 ~~~~   76 (365)
T TIGR00611        73 RVSK   76 (365)
T ss_pred             EEEe
Confidence            7765

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.37  E-value=3.7e-13  Score=108.04  Aligned_cols=124  Identities=14%  Similarity=0.212  Sum_probs=91.0

Q ss_pred             EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ ..-++ ...+++.+     |+.+.|.||||||||||+++|+|+-+..+|.|..-              ....
T Consensus       392 ~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P--------------~~~~  457 (604)
T COG4178         392 GITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP--------------ADSA  457 (604)
T ss_pred             eeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--------------CCCc
Confidence            5788888 55544 44555555     78999999999999999999999988777776431              1235


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-----C--C--CeeEEe--C
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-----N--N--PHFLIM--Q  146 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~--~--~~~l~~--q  146 (159)
                      +-|++|.|          .+|.-|.+|.+.++...      .....+++.+.|..++|.+     +  .  ..-||+  |
T Consensus       458 ~lflpQ~P----------Y~p~GtLre~l~YP~~~------~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEq  521 (604)
T COG4178         458 LLFLPQRP----------YLPQGTLREALCYPNAA------PDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQ  521 (604)
T ss_pred             eEEecCCC----------CCCCccHHHHHhCCCCC------CCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHH
Confidence            78899986          45555888888887541      1245688999999999975     1  1  123444  2


Q ss_pred             -h-hHhHhhcCCCC
Q psy17514        147 -G-RVTKVLNMKPH  158 (159)
Q Consensus       147 -~-~ia~~l~~~p~  158 (159)
                       + ++||++..+|+
T Consensus       522 QRlafARilL~kP~  535 (604)
T COG4178         522 QRLAFARLLLHKPK  535 (604)
T ss_pred             HHHHHHHHHHcCCC
Confidence             3 99999999996

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.37  E-value=1.5e-11  Score=99.93  Aligned_cols=141  Identities=21%  Similarity=0.243  Sum_probs=83.4

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCC-CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFD-REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~-~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |++..|+++||++|++..+-.+++ .++++|+||||+||||||++|++++....  .+......+++...   .....|.
T Consensus         2 ~~~~~l~l~nf~s~~~~~~~i~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~--~~~~~~~~~~~~~~---~~~~~v~   76 (562)
T PHA02562          2 LKFKKIRYKNILSVGNQPIEIQLDKVKKTLITGKNGAGKSTMLEALTFALFGKP--FRDIKKGQLINSIN---KKDLLVE   76 (562)
T ss_pred             ceEEEEEEEcccccCCCceEEEEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCC--cCcCCHHHhhccCC---CCcEEEE
Confidence            467899999999998754223566 58999999999999999999999985432  11111123322111   1245677


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEe----CHHHHHHHHH-hcCcccCC--CeeEEeChhHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSV----NPKRVSDLFS-SVNLNVNN--PHFLIMQGRVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~----~~~~~~~~l~-~~~l~~~~--~~~l~~q~~ia~~  152 (159)
                      +.|...+           ..+++.+.+..+ ...+..++...    ..+.+.+.++ .+|+....  ..-+.+|+.+..+
T Consensus        77 l~f~~~~-----------~~y~i~R~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f  144 (562)
T PHA02562         77 LWFEYGE-----------KEYYIKRGIKPN-VFEIYCNGKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPF  144 (562)
T ss_pred             EEEEECC-----------EEEEEEEeccCC-eEEEecCCEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchhhH
Confidence            7786532           234565554322 22233455432    2345555554 46665422  1234568877777


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      +...|.
T Consensus       145 ~~~~~~  150 (562)
T PHA02562        145 MQLSAP  150 (562)
T ss_pred             hcCChH
Confidence            766664

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.36  E-value=9.9e-12  Score=107.06  Aligned_cols=143  Identities=24%  Similarity=0.334  Sum_probs=82.7

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCC------CCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhh-hhHHHHHHhhCCCc
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFD------REFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRA-NTLQELIYKNGQAG   72 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~------~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~-~~~~~~~~~~~~~~   72 (159)
                      |++..|+++||.+|.+...+ +|+      .++++|+|||||||||||++|++.+... .+.-+. ....++++.+.   
T Consensus         1 Mk~~~l~~~nf~s~~~~~~i-df~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~---   76 (1047)
T PRK10246          1 MKILSLRLKNLNSLKGEWKI-DFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDT---   76 (1047)
T ss_pred             CcceEEEeecceeEcCCceE-EEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCC---
Confidence            88899999999888654332 342      6899999999999999999999988643 211010 11134333222   


Q ss_pred             eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEc----CC-c-----e-EEEEC-CEE--eCHHHHH-HHHHhcCccc
Q psy17514         73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISI----PS-N-----T-RYMIN-GSS--VNPKRVS-DLFSSVNLNV  137 (159)
Q Consensus        73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~----~~-~-----~-~~~~~-~~~--~~~~~~~-~~l~~~~l~~  137 (159)
                       ....|.+.|...+..           +.|.+....    +. .     . .+... +..  .....+. .+-+.+||+.
T Consensus        77 -~~~~v~~~F~~~~~~-----------y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~  144 (1047)
T PRK10246         77 -AECLAEVEFEVKGEA-----------YRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDY  144 (1047)
T ss_pred             -cceEEEEEEEECCeE-----------EEEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCH
Confidence             345677777543211           222221100    00 0     0 01111 110  1112333 3456789987


Q ss_pred             C--CCeeEEeChhHhHhhcCCCCC
Q psy17514        138 N--NPHFLIMQGRVTKVLNMKPHE  159 (159)
Q Consensus       138 ~--~~~~l~~q~~ia~~l~~~p~~  159 (159)
                      +  ...-+++||.++.+|.++|+|
T Consensus       145 ~~F~~~v~l~QG~f~~fl~a~~~e  168 (1047)
T PRK10246        145 GRFTRSMLLSQGQFAAFLNAKPKE  168 (1047)
T ss_pred             HHhhhheeeccccHHHHHhCChHH
Confidence            3  345567799999999998865

>TIGR00606 rad50 rad50

Probab=99.26  E-value=9.3e-12  Score=109.41  Aligned_cols=140  Identities=16%  Similarity=0.264  Sum_probs=80.0

Q ss_pred             EEEEEEeCeeeecC---CeeeecCCCCeEEEEcCCCCcHHHHHHHHHHH----hCCc-ccchhhhhHHHHHHhhCCCcee
Q psy17514          3 IKSMVLDGFKSYGT---RVEINDFDREFNAITGLNGTGKSNILDGICFV----LGIQ-VKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         3 ~~~l~l~~~~~~~~---~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~----~~~~-~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      +..|.|+||++|+.   .....+|+..+++|+|||||||||++++|+++    .+|. .|.+.+.+ ..+..    ....
T Consensus         3 ~~kl~i~g~rSf~~~~~~~~~I~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~-~~~~~----~~~~   77 (1311)
T TIGR00606         3 FLKMSILGVRSFGIEDKDKQIIDFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHD-PKVAQ----ETDV   77 (1311)
T ss_pred             cceeeeeceecCCCccccceeeecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecC-CCcCc----cHhh
Confidence            56799999999973   33234577899999999999999999999644    4554 45544432 11110    1124


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCC--c----------eEEEECCEEe----CHHHH-HHHHHhcCccc
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPS--N----------TRYMINGSSV----NPKRV-SDLFSSVNLNV  137 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~--~----------~~~~~~~~~~----~~~~~-~~~l~~~~l~~  137 (159)
                      .+.|.++|++.+.          ..++|.+.+....  .          ..+..+|...    ....+ ..+.+.+|+..
T Consensus        78 ~a~V~l~F~~~~g----------~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~  147 (1311)
T TIGR00606        78 RAQIRLQFRDVNG----------EECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSK  147 (1311)
T ss_pred             hheeEEEEEcCCC----------CEEEEEeeeeeeeccCcccchhhhhhheecCCCceeeccccHHHHHHHHHHHhCCCH
Confidence            5778888875321          2345655542210  0          1122233221    12234 34567789876


Q ss_pred             C--CCeeEEeChhHhHhhcCCCC
Q psy17514        138 N--NPHFLIMQGRVTKVLNMKPH  158 (159)
Q Consensus       138 ~--~~~~l~~q~~ia~~l~~~p~  158 (159)
                      .  ...-+++||.+. .+..+|+
T Consensus       148 ~~f~~vi~~~Qge~~-~~~~~~~  169 (1311)
T TIGR00606       148 AVLNNVIFCHQEDSN-WPLSEGK  169 (1311)
T ss_pred             HHHhhceeeCCcccc-cccCChH
Confidence            3  333455688764 3445664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN03073 ABC transporter F family; Provisional

Probab=99.26  E-value=5.4e-12  Score=104.78  Aligned_cols=54  Identities=28%  Similarity=0.314  Sum_probs=46.2

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh---CCcccchh
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL---GIQVKQVR   57 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~---~~~~g~i~   57 (159)
                      ..|+++|+ +.|++..+|.+++     |+.++|+|||||||||||++|+|..   .|+.|+|.
T Consensus       176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~  238 (718)
T PLN03073        176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL  238 (718)
T ss_pred             eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE
Confidence            35899999 9999888999998     7899999999999999999999853   35566664

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.23  E-value=7.5e-12  Score=95.62  Aligned_cols=57  Identities=19%  Similarity=0.251  Sum_probs=48.9

Q ss_pred             EEEEEeCe-eeecCC-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514          4 KSMVLDGF-KSYGTR-VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      +.|+++|+ ..|... -.+.++|     ||++.|+|.|||||||+++.+.|+..|++|+|+++|
T Consensus       321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg  384 (546)
T COG4615         321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG  384 (546)
T ss_pred             cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECC
Confidence            46899999 888664 2233444     899999999999999999999999999999999998

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.22  E-value=6.7e-12  Score=80.19  Aligned_cols=65  Identities=14%  Similarity=0.088  Sum_probs=43.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR  104 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~  104 (159)
                      +++++|+||||||||||++++.      .|.+.+.+ +++......  ...+.+++++|.-          ++  .++++
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g-~di~~~~~~--~~~~~~~~~~q~l----------f~--~ti~~   73 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI------KRKHRLVG-DDNVEIRED--SKDELIGRNPELG----------LE--IRLRL   73 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh------CCeEEEee-EeHHHhhhh--hcCCEEEEechhc----------ch--hhHHh
Confidence            5899999999999999999986      66787777 454332221  1234455555541          22  37888


Q ss_pred             EEEcCC
Q psy17514        105 QISIPS  110 (159)
Q Consensus       105 ~i~~~~  110 (159)
                      ||.++-
T Consensus        74 Ni~~~~   79 (107)
T cd00820          74 NIFLIT   79 (107)
T ss_pred             hceeee
Confidence            888753

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>KOG0065|consensus

Probab=99.21  E-value=1e-12  Score=111.97  Aligned_cols=106  Identities=12%  Similarity=0.160  Sum_probs=75.5

Q ss_pred             cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC--CcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCC
Q psy17514         15 GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG--IQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDK   87 (159)
Q Consensus        15 ~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~   87 (159)
                      +.+++|.+++     |-+++|+|+|||||||||+.|++=..  .-.|+|+++|..      ......++.+|||-|++  
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p------~~q~tF~R~~GYvqQ~D--  873 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFP------KDQETFARVSGYVEQQD--  873 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCee------Cchhhhccccceeeccc--
Confidence            3467788888     45899999999999999999998642  237889998831      11123578899999986  


Q ss_pred             CCCCCCccCCCeEEEEEEEEcCCceEEEECCE---EeCHHHHHHHHHhcCccc
Q psy17514         88 KNCPIGYENDNTIVICRQISIPSNTRYMINGS---SVNPKRVSDLFSSVNLNV  137 (159)
Q Consensus        88 ~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~  137 (159)
                             ...+++||+|.+.+...  .|....   .+..+-++++++.++|..
T Consensus       874 -------iH~~~~TVrESL~fSA~--LRlp~~v~~~ek~~yVe~Vi~lleL~~  917 (1391)
T KOG0065|consen  874 -------IHSPELTVRESLRFSAA--LRLPKEVSDEEKYEYVEEVIELLELKE  917 (1391)
T ss_pred             -------ccCcccchHHHHHHHHH--HcCCCcCCHHHHHHHHHHHHHHhCchh
Confidence                   34588999999988643  332221   122245788888888874

>KOG0060|consensus

Probab=99.19  E-value=3.7e-11  Score=95.36  Aligned_cols=132  Identities=16%  Similarity=0.192  Sum_probs=87.4

Q ss_pred             EEEEeCe-eeecC-C-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT-R-VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .++++++ ..=.. . .++++++     +.-.-|+||||||||+||+++.|+-+...|.+..-.       +.    ...
T Consensus       433 ~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~-------~~----~~~  501 (659)
T KOG0060|consen  433 AIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPT-------DG----GPK  501 (659)
T ss_pred             eEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecc-------cC----CCC
Confidence            5677777 44332 3 3344455     556789999999999999999999877788775322       00    114


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------CC------Cee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------NN------PHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~------~~~  142 (159)
                      .+-|++|.|          .++-=|.++++.++.+... ...+..+.+++...|+.+.|.+        +.      -..
T Consensus       502 ~lfflPQrP----------Ymt~GTLRdQvIYP~~~~~-~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv  570 (659)
T KOG0060|consen  502 DLFFLPQRP----------YMTLGTLRDQVIYPLKAED-MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV  570 (659)
T ss_pred             ceEEecCCC----------CccccchhheeeccCcccc-ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence            589999997          3443489999999865333 2223345567777777776654        11      123


Q ss_pred             EEe---Ch-hHhHhhcCCCC
Q psy17514        143 LIM---QG-RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~---q~-~ia~~l~~~p~  158 (159)
                      ||+   |+ ++||++..+|+
T Consensus       571 LS~GEqQRLa~ARLfy~kPk  590 (659)
T KOG0060|consen  571 LSPGEQQRLAFARLFYHKPK  590 (659)
T ss_pred             cCHHHHHHHHHHHHHhcCCc
Confidence            444   44 99999999996

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.16  E-value=1.2e-12  Score=89.96  Aligned_cols=101  Identities=13%  Similarity=0.131  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR  104 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~  104 (159)
                      |++.-+||||||||||||-.++|+++ .+|+|.+.| .++......+  ..++-+|..|+....        | -+-|+.
T Consensus        25 Ge~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G-~~l~~~~~~e--LArhRAYLsQqq~p~--------f-~mpV~~   91 (248)
T COG4138          25 GEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAG-QPLEAWSATE--LARHRAYLSQQQTPP--------F-AMPVWH   91 (248)
T ss_pred             ceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECC-cchhHHhHhH--HHHHHHHHhhccCCc--------c-hhhhhh
Confidence            68889999999999999999999865 468999988 4443211111  122334555543211        1 133444


Q ss_pred             EEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe
Q psy17514        105 QISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM  145 (159)
Q Consensus       105 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~  145 (159)
                      .+...--       .+.....+.++...++|++   +...++|+
T Consensus        92 YL~L~qP-------~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSG  128 (248)
T COG4138          92 YLTLHQP-------DKTRTELLNDVAGALALDDKLGRSTNQLSG  128 (248)
T ss_pred             hhhhcCc-------hHHHHHHHHHHHhhhcccchhhhhhhhcCc
Confidence            4433210       1222456788889999987   34456666

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=99.13  E-value=3.6e-11  Score=84.97  Aligned_cols=46  Identities=39%  Similarity=0.634  Sum_probs=38.3

Q ss_pred             EEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514          5 SMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus         5 ~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      +|+++||++|.+..  .+++.++++|+||||+||||++++|.+++...
T Consensus         1 ~i~i~nf~~~~~~~--i~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~   46 (202)
T PF13476_consen    1 KIHIKNFRSFKDLE--IDFSPGLNVIYGPNGSGKSTILEAIRYALGGQ   46 (202)
T ss_dssp             EEEEEEETTEEEEE--EE--SEEEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred             CEEEEEeCCCcceE--EEcCCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            47899998887655  36788999999999999999999999998654

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.07  E-value=1.4e-11  Score=87.23  Aligned_cols=142  Identities=18%  Similarity=0.274  Sum_probs=89.3

Q ss_pred             EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc----ccchhhhhHHHHHHhhC--
Q psy17514          6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ----VKQVRANTLQELIYKNG--   69 (159)
Q Consensus         6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~----~g~i~~~~~~~~~~~~~--   69 (159)
                      |.+.|+ ..+..    ..++++++     ||+.+++|++|||||-+.++|+|..+..    +-.+|+++ .++....+  
T Consensus         4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~-idLL~L~Pr~   82 (330)
T COG4170           4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDD-IDLLRLSPRE   82 (330)
T ss_pred             ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhccccc-chhhcCChHH
Confidence            556666 55532    33556665     7999999999999999999999998654    44677776 34433221  


Q ss_pred             CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEE----EEE---EcCCceEEEECCEEeCHHHHHHHHHhcCccc-----
Q psy17514         70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVIC----RQI---SIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-----  137 (159)
Q Consensus        70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~----~~i---~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----  137 (159)
                      ......+.|+++||+|..-       +.|.-+|.    +||   .+.++ +....+  ..++++.++|..+|+.+     
T Consensus        83 RRk~ig~~isMIFQeP~sC-------LDPS~~iG~QlIq~IP~wTfkgr-WWq~F~--WrKrrAIeLLHrVGIKdHkDIM  152 (330)
T COG4170          83 RRKLVGHNVSMIFQEPQSC-------LDPSERVGRQLIQNIPAWTYKGR-WWQRFG--WRKRRAIELLHRVGIKDHKDIM  152 (330)
T ss_pred             hhhhhccchhhhhcCchhh-------cChHHHHHHHHHhhCccccccch-Hhhhhc--hhHHHHHHHHHHhccccHHHHH
Confidence            1122356789999997421       22322222    222   12111 111112  24578899999999976     


Q ss_pred             -CCCeeEEe---Ch-hHhHhhcCCCC
Q psy17514        138 -NNPHFLIM---QG-RVTKVLNMKPH  158 (159)
Q Consensus       138 -~~~~~l~~---q~-~ia~~l~~~p~  158 (159)
                       .+|..+--   |+ +||.|++++|+
T Consensus       153 ~SYP~ElTeGE~QKVMIA~A~AnqPr  178 (330)
T COG4170         153 RSYPYELTEGECQKVMIAIALANQPR  178 (330)
T ss_pred             HhCcchhccCcceeeeeehhhccCCc
Confidence             36766654   44 99999999985

>KOG0064|consensus

Probab=99.06  E-value=1e-10  Score=92.20  Aligned_cols=127  Identities=13%  Similarity=0.136  Sum_probs=80.0

Q ss_pred             EEEeCe-eeecCCe-eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGF-KSYGTRV-EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~~~~~-~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      |.++|+ .--.... ++..++     |--..|+||||||||+|+++|.|+-+...|.+..-              ++..+
T Consensus       482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P--------------~~~~m  547 (728)
T KOG0064|consen  482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP--------------RPNNI  547 (728)
T ss_pred             eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC--------------CCcce
Confidence            566666 4433322 223333     34567999999999999999999987766655421              23458


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-EEECCEEeCHHHHHHHHHhcCccc------------CCCeeEEe
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-YMINGSSVNPKRVSDLFSSVNLNV------------NNPHFLIM  145 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~l~~  145 (159)
                      .|++|.|.          +.--|.+++|.++...+ ++  .+...++++..+|..+.|.+            +-..-+++
T Consensus       548 FYIPQRPY----------ms~gtlRDQIIYPdS~e~~~--~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~Lsg  615 (728)
T KOG0064|consen  548 FYIPQRPY----------MSGGTLRDQIIYPDSSEQMK--RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSG  615 (728)
T ss_pred             EeccCCCc----------cCcCcccceeecCCcHHHHH--hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccc
Confidence            99999873          22337889998876532 22  12234567777777766643            11223444


Q ss_pred             ---Ch-hHhHhhcCCCC
Q psy17514        146 ---QG-RVTKVLNMKPH  158 (159)
Q Consensus       146 ---q~-~ia~~l~~~p~  158 (159)
                         |+ .+||++..+|+
T Consensus       616 GekQR~~mARm~yHrPk  632 (728)
T KOG0064|consen  616 GEKQRMGMARMFYHRPK  632 (728)
T ss_pred             hHHHHHHHHHHHhcCcc
Confidence               44 89999999986

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.05  E-value=1.8e-10  Score=83.53  Aligned_cols=27  Identities=30%  Similarity=0.612  Sum_probs=22.7

Q ss_pred             CCeeeecCC-----CCeEEEEcCCCCcHHHHH
Q psy17514         16 TRVEINDFD-----REFNAITGLNGTGKSNIL   42 (159)
Q Consensus        16 ~~~~l~~~~-----~~~~~liG~NGaGKSTLl   42 (159)
                      +..+|.++|     +|+++|+||||||||||+
T Consensus         7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270           7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             hhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence            345667776     799999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.02  E-value=1.2e-10  Score=90.50  Aligned_cols=48  Identities=23%  Similarity=0.310  Sum_probs=40.0

Q ss_pred             EEEeCe-eeecCCeeeecCC------CCeEEEEcCCCCcHHHHHHHHHHHhCCcccc
Q psy17514          6 MVLDGF-KSYGTRVEINDFD------REFNAITGLNGTGKSNILDGICFVLGIQVKQ   55 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~------~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~   55 (159)
                      ++...+ |.|++..  ..++      +|+++++||||-||||+.++|+|.+.|++|.
T Consensus       343 v~y~~~~k~~g~F~--L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~  397 (591)
T COG1245         343 VEYPDLKKTYGDFK--LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS  397 (591)
T ss_pred             eecchheeecCceE--EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence            556677 7888765  2343      6899999999999999999999999999886

>KOG0927|consensus

Probab=99.01  E-value=1.1e-10  Score=92.16  Aligned_cols=125  Identities=15%  Similarity=0.161  Sum_probs=75.1

Q ss_pred             EEEeCe-eeecCC-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGF-KSYGTR-VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~~~~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      +.+.|+ ..|.+. .++.+++     .+.+++||||||||||||+.++|.+.|..|.++...              ...+
T Consensus       390 i~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~--------------H~~~  455 (614)
T KOG0927|consen  390 IMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS--------------HNKL  455 (614)
T ss_pred             EEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc--------------cccc
Confidence            556777 677654 3444444     367899999999999999999999999999886432              1122


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCe-eEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPH-FLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~-~l~~-q~---~ia  150 (159)
                      .+.-|....       .+.-+.+..+++.-.    +   ......+.++.++..+||..   ..|. +||. |+   .+|
T Consensus       456 ~~y~Qh~~e-------~ldl~~s~le~~~~~----~---~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa  521 (614)
T KOG0927|consen  456 PRYNQHLAE-------QLDLDKSSLEFMMPK----F---PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFA  521 (614)
T ss_pred             hhhhhhhHh-------hcCcchhHHHHHHHh----c---cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHH
Confidence            222222110       011112222222111    1   11234578889999999985   3454 4444 44   788


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      +++...|.
T Consensus       522 ~l~~kqP~  529 (614)
T KOG0927|consen  522 RLAVKQPH  529 (614)
T ss_pred             HHHhcCCc
Confidence            88877774

>KOG0066|consensus

Probab=98.99  E-value=1.5e-10  Score=89.83  Aligned_cols=124  Identities=16%  Similarity=0.098  Sum_probs=79.5

Q ss_pred             EEEEeCe-eee-cCCeeeecCCC-----CeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSY-GTRVEINDFDR-----EFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~-~~~~~l~~~~~-----~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|-++++ ..| +..+.+..+++     .-+||+||||.||||||+.|.|-+.|..|+.|-+              .+-+
T Consensus       586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn--------------hrL~  651 (807)
T KOG0066|consen  586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN--------------HRLR  651 (807)
T ss_pred             eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc--------------ceee
Confidence            4678888 888 55666777775     3589999999999999999999999998887643              3556


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccC----CCeeEEe-Ch---hH
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVN----NPHFLIM-QG---RV  149 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~l~~-q~---~i  149 (159)
                      |++.-|....           .++..+.-.-..   .+..+  ...+.++..|..+||..+    ....||+ |.   ++
T Consensus       652 iG~FdQh~~E-----------~L~~Eetp~EyL---qr~FN--lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVal  715 (807)
T KOG0066|consen  652 IGWFDQHANE-----------ALNGEETPVEYL---QRKFN--LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVAL  715 (807)
T ss_pred             eechhhhhHH-----------hhccccCHHHHH---HHhcC--CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHH
Confidence            7776654321           122222111000   11111  223567788888888652    2345666 54   66


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |.++...|+
T Consensus       716 aeLal~~PD  724 (807)
T KOG0066|consen  716 AELALGGPD  724 (807)
T ss_pred             HHHhcCCCC
Confidence            676666664

>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain

Probab=98.98  E-value=1.4e-09  Score=83.70  Aligned_cols=51  Identities=20%  Similarity=0.357  Sum_probs=43.6

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK   54 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g   54 (159)
                      |++.+|+|.||+++....  ..+ .+.++|||+|++||||+|+||+.++.++..
T Consensus         1 M~l~~i~i~~FRgi~~~~--~~l-~~~t~liG~N~~GKss~l~Al~~~l~~~~~   51 (373)
T PF11398_consen    1 MKLERIEISNFRGIKRLS--LPL-DDNTVLIGENNWGKSSLLDALSLLLSPSRR   51 (373)
T ss_pred             CeEEEEEEeccCccceEE--EEe-cCceEEEcCCCccHhHHHHHHHHHhCCCcc
Confidence            899999999998887654  234 468999999999999999999999998743

>KOG0062|consensus

Probab=98.97  E-value=1.2e-10  Score=91.28  Aligned_cols=43  Identities=30%  Similarity=0.554  Sum_probs=37.1

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      -|.+.+| -.|+++.+|.+-+     |.-++|+|+||+||||||++|+.
T Consensus        80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            3778899 9999988776655     67789999999999999999986

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.96  E-value=1e-08  Score=81.95  Aligned_cols=123  Identities=24%  Similarity=0.403  Sum_probs=85.4

Q ss_pred             eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514          2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT   81 (159)
Q Consensus         2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v   81 (159)
                      |+..|.|+||.-+....  .+|+.++++|+|++|||||-++++|..+++....       .++++.+.    .+..|..+
T Consensus         1 ML~~LsIknfaiIe~L~--leF~~GltVlTGETGAGKSIiidAl~lllG~ra~-------~~~VR~G~----~~a~v~a~   67 (557)
T COG0497           1 MLLELSIKNFAIIEELE--LEFEKGLTVLTGETGAGKSIIIDALGLLLGGRAD-------ASLVRHGA----KRAEVEAI   67 (557)
T ss_pred             CCcEEeeeheeeeeeee--eeccCCceEEecCCCCcHhHHHHHHHHHhCCCCC-------cchhcCCC----ceeEEEEE
Confidence            46789999996666655  4677899999999999999999999999887621       12233232    46778888


Q ss_pred             EEcCCCC----CCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHh-cCccc
Q psy17514         82 FDNSDKK----NCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSS-VNLNV  137 (159)
Q Consensus        82 ~q~~~~~----~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~  137 (159)
                      |..+.+.    +...+....+..-+++.+...+++.+++|+..+....+.++... +.|..
T Consensus        68 F~~~~~~~~~~L~e~gie~~~~iilrR~i~~~GrSr~~INg~~Vs~~~L~~l~~~Li~IHG  128 (557)
T COG0497          68 FDLDNPPARAWLEENGIEDDEEVILRRVISADGRSRAFINGQPVSLAQLKELGQLLIDIHG  128 (557)
T ss_pred             ecCCchHHHHHHHHcCCCCcCcEEEEEEEcCCCceeEEECCEEeeHHHHHHHHHhhheeec
Confidence            8765111    11122222234556777877788899999999998888877653 45543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.92  E-value=1.1e-09  Score=96.44  Aligned_cols=56  Identities=21%  Similarity=0.344  Sum_probs=48.4

Q ss_pred             EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514          3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus         3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      +.+|.+.|+.+|.+.+  .++++++++|+|+|||||||+|++|++++.+..|.+.+++
T Consensus         7 i~~l~l~N~~~~~~~~--~~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~   62 (1486)
T PRK04863          7 FRSLTLVNWNGFFART--FDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN   62 (1486)
T ss_pred             eeEEEEecccCccceE--EEecCCeEEEECCCCCCHHHHHHHHHccccCCCCeEEECC
Confidence            6789999998887765  4688889999999999999999999999988877776554

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.82  E-value=2.1e-08  Score=83.07  Aligned_cols=50  Identities=36%  Similarity=0.571  Sum_probs=39.4

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      |.+..|++.||..|.+...+ +++    ..+++|+||||+||||||++|.+++..
T Consensus         1 M~i~~l~l~nf~~~~~~~~~-~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG   54 (650)
T TIGR03185         1 MIILQLTLENFGPYRGRQTF-DLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYG   54 (650)
T ss_pred             CcccEEEEeceEEEcCCcee-eeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            88899999999777654322 233    248999999999999999999888743

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.82  E-value=5.4e-10  Score=88.40  Aligned_cols=143  Identities=13%  Similarity=0.193  Sum_probs=96.4

Q ss_pred             EEEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          5 SMVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         5 ~l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      .++++|+...+   .+.++|     ||+++|.|-=|||+|-|+++|.|+.++.+|+|+++| +.+.... .....++.|+
T Consensus       263 ~l~v~~l~~~~---~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G-~~v~~~s-p~~Ai~~Gi~  337 (500)
T COG1129         263 VLEVRNLSGGG---KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG-KPVRIRS-PRDAIKAGIA  337 (500)
T ss_pred             EEEEecCCCCC---ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECC-EEccCCC-HHHHHHcCCE
Confidence            35666662222   123444     899999999999999999999999888999999998 4332211 2223467899


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE---ECCEEeCHHHHHHHHHhcCccc---CC-CeeEEe--Ch--h
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM---INGSSVNPKRVSDLFSSVNLNV---NN-PHFLIM--QG--R  148 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~---~~-~~~l~~--q~--~  148 (159)
                      |++++....      .++..++|.+|+.++....+.   +-+.....+.+.++.+.+++..   +. ...||+  |+  .
T Consensus       338 ~v~EDRk~~------Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVv  411 (500)
T COG1129         338 YVPEDRKSE------GLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVV  411 (500)
T ss_pred             eCCcccccC------cCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHH
Confidence            998874321      366677899999886221111   1122223456778888898865   23 356777  44  9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      |||.|+.+|+
T Consensus       412 larwL~~~p~  421 (500)
T COG1129         412 LARWLATDPK  421 (500)
T ss_pred             HHHHHhcCCC
Confidence            9999999986

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.76  E-value=1.2e-08  Score=70.42  Aligned_cols=51  Identities=37%  Similarity=0.485  Sum_probs=37.1

Q ss_pred             EEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514          6 MVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQV   56 (159)
Q Consensus         6 l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i   56 (159)
                      +.+.+++.|.....+.-.++.+++|+||||+||||+++++.+......+.+
T Consensus         2 i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~   52 (162)
T cd03227           2 IVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSAT   52 (162)
T ss_pred             ceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhh
Confidence            456677777544433322345999999999999999999998887665444

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.75  E-value=3.1e-09  Score=83.69  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=33.4

Q ss_pred             eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chhhhh
Q psy17514         19 EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVK-QVRANT   60 (159)
Q Consensus        19 ~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~~~~   60 (159)
                      +|.+++     |++++|+|||||||||||+  .++..|++| +|+++|
T Consensus        21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg   66 (504)
T TIGR03238        21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDA   66 (504)
T ss_pred             HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECC
Confidence            456655     7999999999999999999  677777777 688887

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.72  E-value=1.1e-08  Score=72.88  Aligned_cols=85  Identities=16%  Similarity=0.184  Sum_probs=53.1

Q ss_pred             eeecCC---CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCcc
Q psy17514         19 EINDFD---REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYE   95 (159)
Q Consensus        19 ~l~~~~---~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~   95 (159)
                      ++.+++   +++++|+||||||||||+++|++....     ...| .++         ..  -.+++|.         ..
T Consensus        16 v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G-~~v---------~a--~~~~~q~---------~~   69 (199)
T cd03283          16 VANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVIL-----AQAG-APV---------CA--SSFELPP---------VK   69 (199)
T ss_pred             ecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHH-----HHcC-CEE---------ec--CccCccc---------ce
Confidence            444444   579999999999999999999874321     1112 000         01  1355662         25


Q ss_pred             CCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc
Q psy17514         96 NDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL  135 (159)
Q Consensus        96 ~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  135 (159)
                      +++.+++.+++..+... +     ....+++.++++.+++
T Consensus        70 l~~~~~~~d~l~~~~s~-~-----~~e~~~~~~iL~~~~~  103 (199)
T cd03283          70 IFTSIRVSDDLRDGISY-F-----YAELRRLKEIVEKAKK  103 (199)
T ss_pred             EEEeccchhccccccCh-H-----HHHHHHHHHHHHhccC
Confidence            67778999998776431 1     1123567788888774

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]

Probab=98.71  E-value=8.2e-09  Score=77.83  Aligned_cols=57  Identities=26%  Similarity=0.362  Sum_probs=44.0

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCC-CCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhh
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFD-REFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN   59 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~-~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~   59 (159)
                      |.+..|.+.||++|.+..  ..++ .+++.|+||||+||||+|++|..++.+- .+.++..
T Consensus         1 mrLrkiSl~nfr~f~~ld--itf~e~~ttIivgpNGsGKTtvLdair~aL~~fid~~i~~~   59 (440)
T COG3950           1 MRLRKISLNNFRCFLNLD--ITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLR   59 (440)
T ss_pred             Cccchhhhhhhhhhhhce--eecCCCceEEEECCCCCChhhHHHHHHHHHHhhccceeecc
Confidence            667789999998887755  2344 5699999999999999999998887654 3455443

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.70  E-value=1.3e-08  Score=71.73  Aligned_cols=55  Identities=20%  Similarity=0.221  Sum_probs=40.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNS   85 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~   85 (159)
                      ++.++|+||||||||||+++|+++++++.|.+.+.+..++.  ..    ....+.++++.+
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~--~~----~~~~~~~~~~~~   79 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQ--LP----HPNWVRLVTRPG   79 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccC--CC----CCCEEEEEEecC
Confidence            68999999999999999999999999888887775522211  11    234566666654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.69  E-value=1.4e-09  Score=80.72  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=32.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      .-++|+||||||||||+++|++++.+..|++.++|
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g  146 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRG  146 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECC
Confidence            35699999999999999999999999999998887

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>COG1106 Predicted ATPases [General function prediction only]

Probab=98.68  E-value=1.7e-08  Score=77.51  Aligned_cols=47  Identities=43%  Similarity=0.702  Sum_probs=39.7

Q ss_pred             eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514          2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus         2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      |+.+++++||+++.+... .++ +.+++|+|+||||||+||+|+..+..
T Consensus         1 MI~~~~IkNFkSf~e~~~-~~~-~~in~I~G~N~sGKSNlleAl~f~~~   47 (371)
T COG1106           1 MIKSFKIKNFKSFRELEL-EDF-GKINIIYGANGAGKSNLLEALYFLKG   47 (371)
T ss_pred             CceEEEecccccHHHhhh-ccc-cceEEEEcCCCCchhHHHHHHHHHHH
Confidence            477899999999987652 334 78999999999999999999988764

>KOG0065|consensus

Probab=98.67  E-value=2e-08  Score=86.51  Aligned_cols=123  Identities=15%  Similarity=0.151  Sum_probs=81.2

Q ss_pred             eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCC
Q psy17514         18 VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKN   89 (159)
Q Consensus        18 ~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~   89 (159)
                      +++++++     ++++.+.||.||||||||++++|-+.-.   .|++.++|. +..   .  ...++.++|..|..    
T Consensus       129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~-~~~---e--~~~~~~~aY~~e~D----  198 (1391)
T KOG0065|consen  129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGH-DLK---E--FVPKKTVAYNSEQD----  198 (1391)
T ss_pred             eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCC-ccc---c--cccCceEEeccccc----
Confidence            4667776     6899999999999999999999877543   457888873 211   1  11256788888874    


Q ss_pred             CCCCccCCCeEEEEEEEEcCCceEEEECCEE----eCHH----HHHHHHHhcCccc--C------CCeeEEe-Ch---hH
Q psy17514         90 CPIGYENDNTIVICRQISIPSNTRYMINGSS----VNPK----RVSDLFSSVNLNV--N------NPHFLIM-QG---RV  149 (159)
Q Consensus        90 ~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~----~~~~----~~~~~l~~~~l~~--~------~~~~l~~-q~---~i  149 (159)
                           ..++++||+|.+.+..+  ++..+.+    ...+    ..+.+++.+||++  +      ---..|+ |+   .+
T Consensus       199 -----vH~p~lTVreTldFa~r--ck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi  271 (1391)
T KOG0065|consen  199 -----VHFPELTVRETLDFAAR--CKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSI  271 (1391)
T ss_pred             -----cccceeEEeehhhHHHh--ccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeee
Confidence                 57899999999998654  3322111    1112    2446789999986  1      1122333 33   67


Q ss_pred             hHhhcCCC
Q psy17514        150 TKVLNMKP  157 (159)
Q Consensus       150 a~~l~~~p  157 (159)
                      +.+++..|
T Consensus       272 ~E~~v~~~  279 (1391)
T KOG0065|consen  272 GEMLVGPA  279 (1391)
T ss_pred             eeeeecCc
Confidence            77766655

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.66  E-value=2.9e-09  Score=83.37  Aligned_cols=147  Identities=10%  Similarity=0.180  Sum_probs=100.0

Q ss_pred             EEEEeCeeeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGFKSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++++...++  ...+.++|     +|+++|.|-.|-|-+-|+++|+|+.++.+|+|.++| +++..+.......+..
T Consensus       257 vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G-~~v~~~~~~~~~r~~G  335 (501)
T COG3845         257 VLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNG-KDVLGRLSPRERRRLG  335 (501)
T ss_pred             EEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECC-EeccccCCHHHHHhcC
Confidence            478888843333  35567777     799999999999999999999999988889999998 4541111222234567


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEEC---CEEeCHHHHHHHHHhcCccc---CC-CeeEEe---
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMIN---GSSVNPKRVSDLFSSVNLNV---NN-PHFLIM---  145 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~~---~~~~~~~~~~~~l~~~~l~~---~~-~~~l~~---  145 (159)
                      +++++++...      +.+.+++++.+|+.+..-..  +...   ......+...++++.+++..   .. ...||+   
T Consensus       336 ~~~VPedR~~------~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNq  409 (501)
T COG3845         336 LAYVPEDRHG------HGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQ  409 (501)
T ss_pred             CccCChhhcc------CccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcce
Confidence            9999987532      35667789999987643210  1111   12333556778899999875   22 456777   


Q ss_pred             Ch-hHhHhhcCCCC
Q psy17514        146 QG-RVTKVLNMKPH  158 (159)
Q Consensus       146 q~-~ia~~l~~~p~  158 (159)
                      |+ -+||=+..+|+
T Consensus       410 QK~IlaREl~~~p~  423 (501)
T COG3845         410 QKLILARELARRPD  423 (501)
T ss_pred             ehhhhhhhhccCCC
Confidence            44 77777777775

>PF13175 AAA_15: AAA ATPase domain

Probab=98.63  E-value=3.7e-08  Score=76.99  Aligned_cols=46  Identities=30%  Similarity=0.564  Sum_probs=38.0

Q ss_pred             EEEEEEeCeeeecCC-eeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514          3 IKSMVLDGFKSYGTR-VEINDFDREFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus         3 ~~~l~l~~~~~~~~~-~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +..|+++||++|++. .  -+++.++++|||.|||||||+|+||.-+..
T Consensus         1 ik~i~IkNfR~i~~~~~--i~~~~~itiiiG~N~sGKT~IL~aL~~~~~   47 (415)
T PF13175_consen    1 IKKIRIKNFRSIKDSGE--INFDEDITIIIGENNSGKTNILEALDLFFN   47 (415)
T ss_pred             CcEEEEecccccCccce--eecCCceEEEEccCCCCHHHHHHHHHHhcC
Confidence            357899999999887 4  356678999999999999999999954443

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.61  E-value=9.4e-08  Score=75.25  Aligned_cols=81  Identities=16%  Similarity=0.076  Sum_probs=54.1

Q ss_pred             EEEeCe-eeec-CCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhH--HHHHHh--hCCCceeE
Q psy17514          6 MVLDGF-KSYG-TRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTL--QELIYK--NGQAGVTK   75 (159)
Q Consensus         6 l~l~~~-~~~~-~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~--~~~~~~--~~~~~~~~   75 (159)
                      ++.+++ +.|. +..+++.+.    ++.++|+|+||+|||||+++|+++..++.|.+...|.  +++...  .......+
T Consensus       140 ~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~  219 (450)
T PRK06002        140 MTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLK  219 (450)
T ss_pred             eEeecceEEcCCCcEEeeeeceecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhC
Confidence            566777 6674 334444444    7899999999999999999999999998876655320  222110  11011235


Q ss_pred             EEEEEEEEcCC
Q psy17514         76 ASVTLTFDNSD   86 (159)
Q Consensus        76 ~~i~~v~q~~~   86 (159)
                      +.|++++|..+
T Consensus       220 rtI~vV~qsd~  230 (450)
T PRK06002        220 KAVAVVATSDE  230 (450)
T ss_pred             CeEEEEEcCCC
Confidence            68999999754

>COG4637 Predicted ATPase [General function prediction only]

Probab=98.60  E-value=1.7e-08  Score=75.36  Aligned_cols=53  Identities=26%  Similarity=0.463  Sum_probs=41.9

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQV   56 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i   56 (159)
                      ||+..|.++|++++.+..  .++ ..+++|||.||+||||+++++..+-....|++
T Consensus         1 ~~l~si~vknyRs~r~l~--lei-~~~nviIGANGaGKSn~~~~l~~l~~a~~g~l   53 (373)
T COG4637           1 MMLVSIKVKNYRSFRSLD--LEI-RRVNVIIGANGAGKSNFYDALRLLADAVRGNL   53 (373)
T ss_pred             CccchhhhhcchhHHhcc--ccc-cceEEEEcCCCCchhHHHHHHHHHHHHHhhhH
Confidence            788889999998886643  123 67899999999999999999987766555543

>KOG2355|consensus

Probab=98.58  E-value=5.2e-08  Score=69.05  Aligned_cols=56  Identities=20%  Similarity=0.226  Sum_probs=43.5

Q ss_pred             EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514          5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      .|++.|+ ..|.. .+.+.+++     +.-..++|.|||||||||+.|+|---...|.|...|
T Consensus        13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlg   75 (291)
T KOG2355|consen   13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLG   75 (291)
T ss_pred             eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcC
Confidence            5899999 88863 45666676     456789999999999999999986544456666666

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.53  E-value=7.6e-08  Score=74.54  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=29.0

Q ss_pred             CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         17 RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        17 ~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..++.+++     +++.+|+|+|||||||+|++|.|...
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~  434 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK  434 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh
Confidence            34566776     78999999999999999999999864

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.52  E-value=7.3e-08  Score=67.85  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=24.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +++++|+||||||||||+++|++...+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~   28 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT   28 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            468899999999999999999988765

>KOG0927|consensus

Probab=98.52  E-value=1.1e-07  Score=75.49  Aligned_cols=52  Identities=21%  Similarity=0.231  Sum_probs=43.6

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQV   56 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i   56 (159)
                      -+.+.|+ .+|.+..++.+..     ++-++|+|+|||||||+|++|++...|..-++
T Consensus        75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~  132 (614)
T KOG0927|consen   75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI  132 (614)
T ss_pred             cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence            4788899 8888888777776     56789999999999999999999988864433

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.49  E-value=1.3e-07  Score=66.11  Aligned_cols=29  Identities=28%  Similarity=0.369  Sum_probs=26.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         24 DREFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      .+++++|+|+||||||||+++|++++.+.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~   30 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAK   30 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence            37899999999999999999999998763

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.46  E-value=1.3e-07  Score=68.71  Aligned_cols=31  Identities=26%  Similarity=0.306  Sum_probs=28.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQ   55 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~   55 (159)
                      ..+++|.||||||||||.+.|++++.+..|.
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~   63 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGEL   63 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence            4689999999999999999999999988776

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.43  E-value=1.8e-07  Score=66.71  Aligned_cols=24  Identities=38%  Similarity=0.379  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      +++++|+|||||||||||++|++.
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHHHH
Confidence            579999999999999999999854

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR00235 udk uridine kinase

Probab=98.41  E-value=2e-07  Score=66.69  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=24.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.+++|+||||||||||+++|++++.+
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            678999999999999999999998874

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.38  E-value=1.9e-07  Score=70.06  Aligned_cols=32  Identities=22%  Similarity=0.189  Sum_probs=27.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC--Ccccch
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG--IQVKQV   56 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~--~~~g~i   56 (159)
                      ..+++|.|+|||||||+.+.|.+++.  ++.|.+
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V   95 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKV   95 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCce
Confidence            46899999999999999999999986  555554

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.35  E-value=4.8e-07  Score=63.16  Aligned_cols=28  Identities=25%  Similarity=0.285  Sum_probs=24.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      +.+++|+||||||||||+++|+..+.+.
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~   28 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGD   28 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence            3578999999999999999999887543

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.33  E-value=5.4e-07  Score=64.21  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=24.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++++|+||+|||||||++.|++.++
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            68899999999999999999999875

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.33  E-value=3.9e-07  Score=63.66  Aligned_cols=27  Identities=41%  Similarity=0.644  Sum_probs=23.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      .-+++|+|+||+||||||++|+-....
T Consensus        37 apIT~i~GENGsGKSTLLEaiA~~~~~   63 (233)
T COG3910          37 APITFITGENGSGKSTLLEAIAAGMGF   63 (233)
T ss_pred             CceEEEEcCCCccHHHHHHHHHhhccc
Confidence            468999999999999999999866543

>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]

Probab=98.33  E-value=7.5e-07  Score=72.04  Aligned_cols=50  Identities=24%  Similarity=0.501  Sum_probs=44.7

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      |++.++++.||+++....  ..++.+.++|||+|=+|||++|++|..++.+.
T Consensus         1 M~L~~v~I~nFR~i~~ls--l~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~   50 (581)
T COG3593           1 MHLERVKIKNFRGINRLS--LEFEEGLNVLIGENNSGKSSLLDALRLLLDPE   50 (581)
T ss_pred             CcceeEEecccceeeeee--eeecCCceEEEcCCCcchHHHHHHHHHHcCCc
Confidence            889999999999987765  35667899999999999999999999999884

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.30  E-value=4.1e-07  Score=64.80  Aligned_cols=21  Identities=33%  Similarity=0.387  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~   46 (159)
                      .+++|+||||+||||||++|.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            389999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.30  E-value=5.4e-07  Score=65.18  Aligned_cols=25  Identities=24%  Similarity=0.203  Sum_probs=22.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +++|.|+||||||||.+.|.+.+.+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~   25 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSR   25 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            5799999999999999999999864

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.29  E-value=1.4e-07  Score=68.39  Aligned_cols=24  Identities=54%  Similarity=0.919  Sum_probs=0.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+|+|||||||+|++|..+..
T Consensus         1 i~viiG~N~sGKS~il~ai~~~~~   24 (303)
T PF13304_consen    1 INVIIGPNGSGKSNILEAIYFLFS   24 (303)
T ss_dssp             ------------------------
T ss_pred             CCcccccccccccccccccccccc
Confidence            578999999999999999988753

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.29  E-value=6.3e-07  Score=66.83  Aligned_cols=29  Identities=24%  Similarity=0.430  Sum_probs=25.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCcccc
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQVKQ   55 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~~g~   55 (159)
                      +++|+|+||||||||+++|++++++..+.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~   29 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVT   29 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceE
Confidence            57999999999999999999999876553

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.26  E-value=1.5e-06  Score=77.12  Aligned_cols=49  Identities=24%  Similarity=0.233  Sum_probs=39.1

Q ss_pred             eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHH-HHhCCc
Q psy17514          2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGIC-FVLGIQ   52 (159)
Q Consensus         2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~-~~~~~~   52 (159)
                      .+.++-+.|+..|.+..  .+++++.++|+|+|||||||+|++|. .++..+
T Consensus         3 ~~~R~gliN~~~~~~~~--~~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~   52 (1353)
T TIGR02680         3 RPHRAGLVNLWYYDEQE--FWFRDGRLLLRGNNGAGKSKVLELLLPFLLDGK   52 (1353)
T ss_pred             eeeeEEEEEeccccceE--EecCCCeEEEECCCCCcHHHHHHHHHHHHhcCC
Confidence            35678899998887755  57889999999999999999999854 444443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.26  E-value=1.1e-06  Score=62.92  Aligned_cols=25  Identities=40%  Similarity=0.569  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +++++|+||||+||||++++|+++.
T Consensus        29 ~~~~~l~G~n~~GKstll~~i~~~~   53 (204)
T cd03282          29 SRFHIITGPNMSGKSTYLKQIALLA   53 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            5899999999999999999998764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.23  E-value=8.6e-07  Score=61.85  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.+++|+||||||||||++.|+...+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            46889999999999999999998653

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.20  E-value=1.3e-06  Score=62.04  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +++|+||||||||||.++|.+++
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            57999999999999999999987

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PLN02796 D-glycerate 3-kinase

Probab=98.20  E-value=1.2e-06  Score=66.89  Aligned_cols=34  Identities=12%  Similarity=0.343  Sum_probs=27.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANT   60 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~   60 (159)
                      +++|+|++|||||||+++|.+++.+.   .|.+..++
T Consensus       102 iIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd  138 (347)
T PLN02796        102 VIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD  138 (347)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence            58999999999999999999999764   45555443

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.16  E-value=1.1e-06  Score=70.48  Aligned_cols=51  Identities=16%  Similarity=0.136  Sum_probs=40.2

Q ss_pred             eCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhh
Q psy17514          9 DGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN   59 (159)
Q Consensus         9 ~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~   59 (159)
                      .+| ..|++..++..++     ++.++|+||||+|||||++.|.+++++..|+....
T Consensus       188 ~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le  244 (506)
T PRK09862        188 HDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALE  244 (506)
T ss_pred             cCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEe
Confidence            467 6676655544444     68899999999999999999999999988765443

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.14  E-value=1.7e-06  Score=59.40  Aligned_cols=33  Identities=15%  Similarity=0.311  Sum_probs=23.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVR   57 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~   57 (159)
                      +.+++|+|++|+|||||+++|.+-.....++|+
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is   67 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS   67 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence            689999999999999999999876544444444

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.13  E-value=2.1e-06  Score=65.41  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      +.+++|+||||+||||++..|++.+.+..+++.+.+
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~  149 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA  149 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence            679999999999999999999999887766665543

>PRK08149 ATP synthase SpaL; Validated

Probab=98.12  E-value=4.4e-06  Score=65.72  Aligned_cols=60  Identities=17%  Similarity=0.209  Sum_probs=41.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcc---cchhhhhHHHH---HHhhCCCceeEEEEEEEEEcCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQV---KQVRANTLQEL---IYKNGQAGVTKASVTLTFDNSD   86 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~---g~i~~~~~~~~---~~~~~~~~~~~~~i~~v~q~~~   86 (159)
                      ++.++|+|+||+|||||+++|++...++.   |.|...+ .++   ..... ......++++|+...+
T Consensus       151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg-~ev~e~~~~~l-~~~~~~~~~vV~~~sd  216 (428)
T PRK08149        151 GQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERG-REVTEFVESLR-ASSRREKCVLVYATSD  216 (428)
T ss_pred             CCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCC-ccHHHHHHHHh-hcccccceEEEEECCC
Confidence            78999999999999999999999887774   6555554 232   22111 1223467888887654

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.11  E-value=2.3e-06  Score=61.72  Aligned_cols=25  Identities=36%  Similarity=0.493  Sum_probs=22.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .++++|+||||+||||+|++|+++.
T Consensus        30 ~~~~~l~Gpn~sGKstllr~i~~~~   54 (216)
T cd03284          30 RQILLITGPNMAGKSTYLRQVALIA   54 (216)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHH
Confidence            4789999999999999999998653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.10  E-value=2.2e-06  Score=65.09  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=30.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN   59 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~   59 (159)
                      ++.++|+||+|||||||+++|.+.+++..+.+.+.
T Consensus       144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie  178 (308)
T TIGR02788       144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE  178 (308)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence            57889999999999999999999998877765554

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.10  E-value=2.3e-06  Score=64.31  Aligned_cols=34  Identities=18%  Similarity=0.392  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA   58 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~   58 (159)
                      +.+++++|+||+|||||+++|.+...++.|++..
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~  194 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE  194 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence            5789999999999999999999998888887754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.09  E-value=2.6e-06  Score=61.35  Aligned_cols=22  Identities=36%  Similarity=0.513  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      .+.+|+||||+||||||+.|..
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            6789999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.07  E-value=3.5e-06  Score=61.01  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=27.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH-HhCCcccchh
Q psy17514         25 REFNAITGLNGTGKSNILDGICF-VLGIQVKQVR   57 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~-~~~~~~g~i~   57 (159)
                      +++++|+||||+||||+|++|++ .+.+..|.+.
T Consensus        31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v   64 (222)
T cd03287          31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFV   64 (222)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            57899999999999999999998 4455566543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.06  E-value=3.5e-06  Score=60.29  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=23.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.+++|.|+||||||||.++|+..+.
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46889999999999999999999873

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.06  E-value=3.2e-06  Score=60.03  Aligned_cols=30  Identities=27%  Similarity=0.274  Sum_probs=24.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCcccchh
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGIQVKQVR   57 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~~~g~i~   57 (159)
                      ++|+|++|+|||||+++|.+...+..|.+.
T Consensus         4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~   33 (197)
T cd04104           4 IAVTGESGAGKSSFINALRGVGHEEEGAAP   33 (197)
T ss_pred             EEEECCCCCCHHHHHHHHhccCCCCCCccc
Confidence            689999999999999999997766555443

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.06  E-value=2.1e-06  Score=60.19  Aligned_cols=31  Identities=19%  Similarity=0.219  Sum_probs=24.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH---HHhCCcccch
Q psy17514         26 EFNAITGLNGTGKSNILDGIC---FVLGIQVKQV   56 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~---~~~~~~~g~i   56 (159)
                      .+++|+|++||||||+.+.|+   |+..++.|++
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~   37 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDL   37 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence            578999999999999999998   5555555554

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.06  E-value=2.8e-06  Score=64.19  Aligned_cols=35  Identities=20%  Similarity=0.440  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514         24 DREFNAITGLNGTGKSNILDGICFVLGIQVKQVRA   58 (159)
Q Consensus        24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~   58 (159)
                      .+.+++|+|+||+|||||+++|.+...+..|++..
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~  197 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE  197 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence            36789999999999999999999988888787764

>PRK01889 GTPase RsgA; Reviewed

Probab=98.05  E-value=3.7e-06  Score=65.02  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      +++++|+|+||+|||||+++|.+...++.|++...+
T Consensus       195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~  230 (356)
T PRK01889        195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDD  230 (356)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECC
Confidence            579999999999999999999999999999988764

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.03  E-value=3.8e-06  Score=65.68  Aligned_cols=36  Identities=8%  Similarity=0.244  Sum_probs=28.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~   60 (159)
                      .-+++|.|++|||||||.+.|.+++.+.   .+.|..++
T Consensus       212 PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD  250 (460)
T PLN03046        212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD  250 (460)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence            3578999999999999999999998654   45555544

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.03  E-value=5e-06  Score=59.18  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=25.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGIQ-VKQVR   57 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~   57 (159)
                      +++.|+||+||||||++++|...+.+. .+.+.
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~   34 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHIL   34 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEE
Confidence            578999999999999999988777643 44443

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.01  E-value=7.2e-06  Score=64.65  Aligned_cols=61  Identities=21%  Similarity=0.199  Sum_probs=39.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcc---cchhhhh--HHHHHHh-hCCCceeEEEEEEEEEcC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQV---KQVRANT--LQELIYK-NGQAGVTKASVTLTFDNS   85 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~---g~i~~~~--~~~~~~~-~~~~~~~~~~i~~v~q~~   85 (159)
                      ++.++|+|+||+|||||+++|++...++.   |.+-..+  ..++... -......+..+++.+++.
T Consensus       155 GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~  221 (434)
T PRK07196        155 GQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE  221 (434)
T ss_pred             ceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence            68999999999999999999999987764   2222222  1111111 111223456788888774

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.01  E-value=3.6e-06  Score=67.16  Aligned_cols=29  Identities=17%  Similarity=0.185  Sum_probs=25.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQV   53 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~   53 (159)
                      +.+++|+||||+||||++..|++.+....
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~  284 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAARCVMRH  284 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHHHHHhc
Confidence            67999999999999999999998765443

>cd04155 Arl3 Arl3 subfamily

Probab=98.01  E-value=4e-06  Score=57.77  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|++|||||||++.+.+.
T Consensus        16 ~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          16 RILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             EEEEEccCCCCHHHHHHHHhcC
Confidence            4789999999999999999986

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=4.8e-06  Score=65.44  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=22.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      +++++|+||||+||||++..|++.
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999999875

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.01  E-value=5e-06  Score=55.74  Aligned_cols=26  Identities=23%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      +++|+||+|||||||++.|+..+++.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~   26 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPN   26 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence            46899999999999999999876543

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.00  E-value=5e-06  Score=57.81  Aligned_cols=26  Identities=31%  Similarity=0.418  Sum_probs=23.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      .+++|+|++|||||||++.|...+.+
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~~l~~   32 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIPALCA   32 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHhh
Confidence            47899999999999999999988865

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.00  E-value=5.6e-06  Score=65.38  Aligned_cols=61  Identities=13%  Similarity=0.105  Sum_probs=41.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcc---cchhhhhH--HHHHHhhCCCceeEEEEEEEEEcCCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQV---KQVRANTL--QELIYKNGQAGVTKASVTLTFDNSDK   87 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~---g~i~~~~~--~~~~~~~~~~~~~~~~i~~v~q~~~~   87 (159)
                      ++.++|+|+||+|||||+++|+++..++.   |.|...+.  .+++....  .......+++|++..+
T Consensus       175 Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~--~~~~~~~tvVv~~~ad  240 (455)
T PRK07960        175 GQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENIL--GAEGRARSVVIAAPAD  240 (455)
T ss_pred             CcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhc--CcCCCceEEEEEECCC
Confidence            68999999999999999999999988874   55555441  22222111  1123567788887543

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=97.99  E-value=8.9e-06  Score=64.39  Aligned_cols=60  Identities=17%  Similarity=0.119  Sum_probs=42.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhH-----HHHHHhhCCCceeEEEEEEEEEc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTL-----QELIYKNGQAGVTKASVTLTFDN   84 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~-----~~~~~~~~~~~~~~~~i~~v~q~   84 (159)
                      ++.++|+|+||+|||||+++|++...++.|.+...|.     .+++...-.....++.|.++.+.
T Consensus       158 Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~  222 (438)
T PRK07721        158 GQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS  222 (438)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence            7899999999999999999999999998887766321     22222111112245678888754

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.98  E-value=6.5e-06  Score=63.67  Aligned_cols=26  Identities=38%  Similarity=0.493  Sum_probs=23.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++++|+||+||||||+|++|...+.
T Consensus       134 ~glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       134 EGIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            48899999999999999999998874

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.98  E-value=5.7e-06  Score=58.81  Aligned_cols=36  Identities=25%  Similarity=0.216  Sum_probs=29.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~   60 (159)
                      +.+++|+|+||||||||.+.|...+.+. .|.+.+++
T Consensus        24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~   60 (198)
T PRK03846         24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG   60 (198)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence            6899999999999999999999987544 34555554

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.97  E-value=5.3e-06  Score=67.41  Aligned_cols=33  Identities=12%  Similarity=0.324  Sum_probs=27.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      +++|.||||||||||.+.|.+++ +..|.|..++
T Consensus        67 IIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDd   99 (656)
T PLN02318         67 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDN   99 (656)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcc
Confidence            78999999999999999999987 3455565554

>TIGR00101 ureG urease accessory protein UreG

Probab=97.97  E-value=8.5e-06  Score=58.06  Aligned_cols=26  Identities=19%  Similarity=0.385  Sum_probs=23.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      .++|+||+|||||||++.+.+.+.+.
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~   28 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQK   28 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcC
Confidence            47899999999999999999887665

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB

Probab=97.96  E-value=4.6e-06  Score=58.72  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=34.0

Q ss_pred             EEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514          4 KSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRA   58 (159)
Q Consensus         4 ~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~   58 (159)
                      .+|.+-|+..|--++  .+++.-++.|.|.|||||||+|-+..-.+-|+-.-+++
T Consensus         8 ~SLtlVNwNG~fart--fdLd~lvTtL~G~NGAGKsT~m~Af~taLIPD~~~l~f   60 (227)
T PF04310_consen    8 RSLTLVNWNGFFART--FDLDELVTTLSGGNGAGKSTTMAAFITALIPDQTLLHF   60 (227)
T ss_dssp             EEEEEECETTECEEE--EEHHCCCCCCCCSTTCCHHHHHHHHHHHHS--TTT---
T ss_pred             ceEEEEeecCeeeeE--eehhhheEeeecCCCCcchhhHHHHHHHhcccceEEee
Confidence            456666663332233  23445688999999999999999998888887544444

MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.95  E-value=8.9e-06  Score=53.32  Aligned_cols=28  Identities=29%  Similarity=0.404  Sum_probs=24.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      +..+.|+||+|+||||+++.|+..+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            3568899999999999999999887654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.94  E-value=8.4e-06  Score=53.06  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|.|++||||||+.+.|+-.+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999987643

...

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.94  E-value=5.8e-06  Score=55.61  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|++|||||||++.+.+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            589999999999999999886

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.92  E-value=6e-06  Score=56.07  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHH--HHhCCccc
Q psy17514         28 NAITGLNGTGKSNILDGIC--FVLGIQVK   54 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~--~~~~~~~g   54 (159)
                      ++|+|++|||||||++.|.  ....+.++
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~   30 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSK   30 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecC
Confidence            5899999999999999998  44444433

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=97.91  E-value=8.3e-06  Score=57.38  Aligned_cols=21  Identities=38%  Similarity=0.393  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +.+|+||||+||||+|+.+..
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~   21 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGL   21 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHH
Confidence            357999999999999999983

>PRK07429 phosphoribulokinase; Provisional

Probab=97.91  E-value=1e-05  Score=61.83  Aligned_cols=27  Identities=30%  Similarity=0.592  Sum_probs=24.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCcc
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQV   53 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~~   53 (159)
                      +++|.|+|||||||+.+.|++++++..
T Consensus        10 IIgI~G~SGSGKSTla~~L~~ll~~~~   36 (327)
T PRK07429         10 LLGVAGDSGCGKTTFLRGLADLLGEEL   36 (327)
T ss_pred             EEEEECCCCCCHHHHHHHHHhHhccCc
Confidence            689999999999999999999988664

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.91  E-value=2.1e-05  Score=57.27  Aligned_cols=43  Identities=23%  Similarity=0.142  Sum_probs=31.6

Q ss_pred             EEEeCe-eeecCCeeeecCCCCeEEEEcCCCCcHHHH-HHHHHHHhCCc
Q psy17514          6 MVLDGF-KSYGTRVEINDFDREFNAITGLNGTGKSNI-LDGICFVLGIQ   52 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~~~~~~liG~NGaGKSTL-l~~i~~~~~~~   52 (159)
                      +.+.++ +.+++.-    ..++++.|+|+|||||||| ++.++++....
T Consensus         8 ~~~~~ld~~l~ggi----~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g   52 (230)
T PRK08533          8 LSRDELHKRLGGGI----PAGSLILIEGDESTGKSILSQRLAYGFLQNG   52 (230)
T ss_pred             EEEeeeehhhCCCC----CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            556677 6555421    2278999999999999999 68888876543

>KOG0062|consensus

Probab=97.90  E-value=1.9e-06  Score=68.22  Aligned_cols=125  Identities=14%  Similarity=0.044  Sum_probs=76.4

Q ss_pred             EEEEeCe-eeecCCe--eeecCCC-----CeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGTRV--EINDFDR-----EFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~--~l~~~~~-----~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .+++..+ ..|....  .+..++.     .-.+++|+||+||||+++++.+-+.|..|.+...              .+.
T Consensus       362 ~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~--------------~r~  427 (582)
T KOG0062|consen  362 NLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH--------------PRL  427 (582)
T ss_pred             eeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec--------------ccc
Confidence            3666666 6664332  4444542     4578999999999999999999888776644322              356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCC-eeEEe-Ch---h
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNP-HFLIM-QG---R  148 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~-~~l~~-q~---~  148 (159)
                      +|++.+|..-+        .+ .+.|.. +.+..   -...|.  .++++..-|..+||+.   .++ ..||+ |+   +
T Consensus       428 ri~~f~Qhhvd--------~l-~~~v~~-vd~~~---~~~pG~--~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrva  492 (582)
T KOG0062|consen  428 RIKYFAQHHVD--------FL-DKNVNA-VDFME---KSFPGK--TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVA  492 (582)
T ss_pred             eecchhHhhhh--------HH-HHHhHH-HHHHH---HhCCCC--CHHHHHHHHHhcCCCchhhhccccccCCcchhHHH
Confidence            78888876311        00 011110 00000   011233  5688999999999986   233 45666 65   7


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      +|.+..++|.
T Consensus       493 fA~~~~~~Ph  502 (582)
T KOG0062|consen  493 FAACTWNNPH  502 (582)
T ss_pred             HHHHhcCCCc
Confidence            7777777773

>TIGR00017 cmk cytidylate kinase

Probab=97.88  E-value=1.4e-05  Score=57.73  Aligned_cols=31  Identities=29%  Similarity=0.455  Sum_probs=25.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC---Ccccchh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG---IQVKQVR   57 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~---~~~g~i~   57 (159)
                      +++|.||+||||||+.+.|+.-+.   ++.|.++
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~   37 (217)
T TIGR00017         4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMY   37 (217)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHH
Confidence            578999999999999999996555   5677664

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.88  E-value=1.1e-05  Score=56.36  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      |-+++|.||||+|||||+++|.-
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~   26 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLE   26 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            56789999999999999999853

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.87  E-value=1.3e-05  Score=59.98  Aligned_cols=28  Identities=18%  Similarity=0.221  Sum_probs=24.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      ..++.|+|++||||||||+.+...+...
T Consensus       104 ~~~v~l~G~pGsGKTTLl~~l~~~l~~~  131 (290)
T PRK10463        104 QLVLNLVSSPGSGKTTLLTETLMRLKDS  131 (290)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence            4678999999999999999998887654

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.86  E-value=1.1e-05  Score=59.71  Aligned_cols=21  Identities=29%  Similarity=0.688  Sum_probs=19.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGI   45 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i   45 (159)
                      +.+++|+|+||||||||++.+
T Consensus        21 g~~~~vtGvSGsGKStL~~~~   41 (261)
T cd03271          21 GVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_pred             CcEEEEECCCCCchHHHHHHH
Confidence            789999999999999999855

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>smart00053 DYNc Dynamin, GTPase

Probab=97.86  E-value=1.3e-05  Score=58.66  Aligned_cols=27  Identities=26%  Similarity=0.260  Sum_probs=23.3

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         23 FDREFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        23 ~~~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++.-.++++|++||||||+|++|+|..
T Consensus        24 i~~p~i~vvG~~~~GKSt~l~~i~g~~   50 (240)
T smart00053       24 LDLPQIAVVGGQSAGKSSVLENFVGRD   50 (240)
T ss_pred             CCCCeEEEEcCCCccHHHHHHHHhCCC
Confidence            344568999999999999999999973

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.85  E-value=2.2e-05  Score=52.32  Aligned_cols=27  Identities=30%  Similarity=0.485  Sum_probs=24.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.+++|.|+.|||||||.+.++..+..
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            678999999999999999999987764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
1xew_X	182	Structural Biochemistry Of Atp-Driven Dimerization		2e-19
4i99_A	354	Crystal Structure Of The Smchead Bound To The C-win		1e-18
3kta_A	182	Structural Basis For Adenylate Kinase Activity In A		1e-18
1e69_A	322	Smc Head Domain From Thermotoga Maritima Length = 3		1e-15
3zgx_A	426	Crystal Structure Of The Kleisin-n Smc Interface In		2e-15
1w1w_A	430	Sc Smc1hd:scc1-c Complex, Atpgs Length = 430		1e-14

>pdb|1XEW|X Chain X, Structural Biochemistry Of Atp-Driven Dimerization And Dna Stimulated Activation Of Smc Atpases. Length = 182

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 8/161 (4%)
Query: 2   YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVL-GIQVKQVRANT 60
           YI+ + L GFKSYG +  +  F + F AI G NG+GKSNI D I FVL G+  K +RA+ 
Sbjct: 3   YIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASR 62
Query: 61  LQELIYKNG--QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING 118
           + +LI+     +     A V + F+N D +  PI   +++ +VI R++     + Y +NG
Sbjct: 63  ISDLIFAGSKNEPPAKYAEVAIYFNNED-RGFPI---DEDEVVIRRRVYPDGRSSYWLNG 118
Query: 119 SSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
                  + D+ ++  ++ +  + +++QG +TK + M P E
Sbjct: 119 RRATRSEILDILTAAMISPDG-YNIVLQGDITKFIKMSPLE 158

>pdb|4I99|A Chain A, Crystal Structure Of The Smchead Bound To The C-winged Helix Domain Of Scpa Length = 354

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 8/161 (4%)
Query: 2   YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVL-GIQVKQVRANT 60
           YI+ + L GFKSYG +  +  F + F AI G NG+GKSNI D I FVL G+  K  RA+ 
Sbjct: 3   YIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAXRASR 62
Query: 61  LQELIYKNG--QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING 118
           + +LI+     +     A V + F+N D +  PI   +++ +VI R++     + Y +NG
Sbjct: 63  ISDLIFAGSKNEPPAKYAEVAIYFNNED-RGFPI---DEDEVVIRRRVYPDGRSSYWLNG 118
Query: 119 SSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
                  + D+ ++  ++ +  + +++QG +TK +   P E
Sbjct: 119 RRATRSEILDILTAAXISPDG-YNIVLQGDITKFIKXSPLE 158

>pdb|3KTA|A Chain A, Structural Basis For Adenylate Kinase Activity In Abc Atpases Length = 182

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 8/161 (4%)
Query: 2   YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVL-GIQVKQVRANT 60
           YI+ + L GFKSYG +  +  F + F AI G NG+GKSNI D I FVL G+  K  RA+ 
Sbjct: 3   YIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAXRASR 62
Query: 61  LQELIYKNG--QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING 118
           + +LI+     +     A V + F+N D +  PI   +++ +VI R++     + Y +NG
Sbjct: 63  ISDLIFAGSKNEPPAKYAEVAIYFNNED-RGFPI---DEDEVVIRRRVYPDGRSSYWLNG 118
Query: 119 SSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
                  + D+ ++  ++ +  + +++QG +TK +   P E
Sbjct: 119 RRATRSEILDILTAAXISPDG-YNIVLQGDITKFIKXSPLE 158

>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima Length = 322

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 16/162 (9%)
Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQV-KQVRAN 59
           M +K + L GFKS+G R  +  F     AI G NG+GKSNI+D I +V G Q  K++RA+
Sbjct: 1   MRLKKLYLKGFKSFG-RPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRAS 59
Query: 60  TLQELIYKNGQ--AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
              ++I+   +       A V L F+           EN   I + R++       Y +N
Sbjct: 60  EKFDMIFAGSENLPPAGSAYVELVFE-----------ENGEEITVARELKRTGENTYYLN 108
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           GS V  K + D F+   L V+  + ++ QG++ +++N  P E
Sbjct: 109 GSPVRLKDIRDRFAGTGLGVDF-YSIVGQGQIDRIVNASPEE 149

>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In Prokaryotic Condensin Length = 426

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 9/162 (5%)
Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
           M++K + + GFKS+  R+ + DF +   A+ G NG+GKSNI D I +VLG Q  + +R  
Sbjct: 1   MFLKRLDVIGFKSFAERISV-DFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGG 59
Query: 60  TLQELIY--KNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
            ++++I+   + +  +  A VTLT DN D    PI +   + + + R++     + ++IN
Sbjct: 60  KMEDIIFAGSDSRKRLNLAEVTLTLDNDD-HFLPIDF---HEVSVTRRVYRSGESEFLIN 115
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
                 K + DLF    L       +I QG+V ++L+ K  +
Sbjct: 116 NQPCRLKDIIDLFMDSGLG-KEAFSIISQGKVEEILSSKAED 156

>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs Length = 430

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 87/162 (53%), Gaps = 12/162 (7%)
Query: 6   MVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELI 65
           + L  FKSY    ++   +  F +I G NG+GKSN++D I FVLG++   +R+N L++LI
Sbjct: 7   LELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLI 66
Query: 66  YKNGQAGVTKASVTLTFDN-----SDKKNCPIG--YENDNTIV-ICRQISIPSNTRYMIN 117
           Y+    GV     +  +DN     S+ ++  +   Y+  N +V + R IS   +T Y I+
Sbjct: 67  YR----GVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKID 122
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           G +V+ K  S    + N+ +   +FL+ QG V ++    P E
Sbjct: 123 GKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVE 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	2e-35
3kta_A	182	Chromosome segregation protein SMC; structural mai	9e-35
1e69_A	322	Chromosome segregation SMC protein; structural mai	3e-29
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	1e-18
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	2e-18
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	3e-17
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	3e-13
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	3e-13
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	1e-10
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	4e-05
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	5e-05

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score =  126 bits (319), Expect = 2e-35
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 14/167 (8%)

Query: 2   YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTL 61
            +  + L  FKSY    ++   +  F +I G NG+GKSN++D I FVLG++   +R+N L
Sbjct: 3   RLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNIL 62

Query: 62  QELIY--------KNGQAGVTKASVTLTFDNSDKKNCPIGYENDNT-IVICRQISIPSNT 112
           ++LIY         +       AS                Y+  N  + + R IS   +T
Sbjct: 63  KDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAF-----YQKGNKLVELMRIISRNGDT 117

Query: 113 RYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
            Y I+G +V+ K  S    + N+ +   +FL+ QG V ++    P E
Sbjct: 118 SYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVE 164

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* Length = 182

 Score =  118 bits (299), Expect = 9e-35
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
            YI+ + L GFKSYG +  +  F + F AI G NG+GKSNI D I FVLG    K +RA+
Sbjct: 2   PYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRAS 61

Query: 60  TLQELIYKNGQAG---VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI 116
            + +LI+  G         A V + F+N D+   PI     + +VI R++     + Y +
Sbjct: 62  RISDLIF-AGSKNEPPAKYAEVAIYFNNEDRG-FPIDE---DEVVIRRRVYPDGRSSYWL 116

Query: 117 NGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           NG       + D+ ++  ++  + + +++QG +TK + M P E
Sbjct: 117 NGRRATRSEILDILTAAMIS-PDGYNIVLQGDITKFIKMSPLE 158

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 Length = 322

 Score =  108 bits (271), Expect = 3e-29
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
           M +K + L GFKS+G    I  F     AI G NG+GKSNI+D I +V G Q  K++RA+
Sbjct: 1   MRLKKLYLKGFKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRAS 59

Query: 60  TLQELIYKNGQAG---VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI 116
              ++I+  G         A V L F+ +              I + R++       Y +
Sbjct: 60  EKFDMIF-AGSENLPPAGSAYVELVFEEN-----------GEEITVARELKRTGENTYYL 107

Query: 117 NGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
           NGS V  K + D F+   L V+  + ++ QG++ +++N  P E
Sbjct: 108 NGSPVRLKDIRDRFAGTGLGVDF-YSIVGQGQIDRIVNASPEE 149

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 80.3 bits (198), Expect = 1e-18
 Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 26/165 (15%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
           M +K + ++ FKS+     I  F++   AI G NG+GKS+I + + F L           
Sbjct: 3   MILKEIRMNNFKSHV-NSRI-KFEKGIVAIIGENGSGKSSIFEAVFFALF---GAGSNFN 57

Query: 61  LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
              +I K          V L F+ +        Y+      I R+         +     
Sbjct: 58  YDTIITKGK----KSVYVELDFEVNGNN-----YK------IIREYDSGRGGAKLYKNGK 102

Query: 121 VNPKRVSDLFSSVN--LNVNNPHF----LIMQGRVTKVLNMKPHE 159
                +S +  +VN  L V+   F     I QG + K L++KP E
Sbjct: 103 PYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSE 147

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* Length = 203

 Score = 77.4 bits (191), Expect = 2e-18
 Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 30/170 (17%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
           M ++ + +  F+S+     + +F    N I G NG+GKS++LD I   L   ++ ++   
Sbjct: 1   MKLERVTVKNFRSHS-DTVV-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR-IKDIK 57

Query: 61  LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
             E              + L F+    K     Y       I R+     ++  +     
Sbjct: 58  KDEFTKVGA----RDTYIDLIFEKDGTK-----YR------ITRRFLKGYSSGEIHAMKR 102

Query: 121 VNPKRVSDLFSSVNLNVNNPHFLIM------------QGRVTKVLNMKPH 158
           +       +    +  ++     ++            QG++  +L     
Sbjct: 103 LVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEA 152

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* Length = 149

 Score = 72.8 bits (179), Expect = 3e-17
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 1  MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
          M ++ + +  F+S+     + +F    N I G NG+GKS++LD I   L   ++ ++   
Sbjct: 1  MKLERVTVKNFRSHS-DTVV-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR-IKDIK 57

Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKK 88
            E        G     + L F+    K
Sbjct: 58 KDEFTKV----GARDTYIDLIFEKDGTK 81

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365

 Score = 65.3 bits (159), Expect = 3e-13
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 1  MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVL-GIQVKQVRAN 59
          M  + + +  F      V+I +F      + G NG GKS++ + I F L G     +R  
Sbjct: 1  MRPERLTVRNFLGLKN-VDI-EFQSGITVVEGPNGAGKSSLFEAISFALFG---NGIRYP 55

Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKK 88
             + + +N  A    A +   F+   K+
Sbjct: 56 NSYDYVNRN--AVDGTARLVFQFERGGKR 82

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 65.1 bits (158), Expect = 3e-13
 Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 12/158 (7%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
           M ++ + +  F+S+     + +F    N I G NG+GKS++LD I   L     +++   
Sbjct: 1   MKLERVTVKNFRSHS-DTVV-EFKEGINLIIGQNGSGKSSLLDAILVGLYWP-LRIKDIK 57

Query: 61  LQELIYKNGQAGVTKASVTLTFDNSDKK---NCPIGYENDNTIVICRQISIPSNTRYMIN 117
             E        G     + L F+    K            +  +   +  + +  +++  
Sbjct: 58  KDEFTKV----GARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTE 113

Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNM 155
            SS       +     N+ +N     I QG++  +L  
Sbjct: 114 PSSKAISAFMEKLIPYNIFLNA--IYIRQGQIDAILES 149

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} Length = 359

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 1  MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
          + + ++    +++      + +F      I G NG GK+N+L+     L     Q  A  
Sbjct: 4  VRLSALSTLNYRNL-APGTL-NFPEGVTGIYGENGAGKTNLLEAAYLALT---GQTDAPR 58

Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKK 88
          +++LI    QAG T+A V          
Sbjct: 59 IEQLI----QAGETEAYVRADLQQGGSL 82

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 Length = 227

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 3   IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ 62
            +S+ L  +  +  R    D D     ++G NG GKS  +      L   +  +      
Sbjct: 7   FRSLTLINWNGFFARTF--DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64

Query: 63  EL--------IYKNGQAGVTKASVTLTFDNSDKKNCPIG 93
           E            +G+         L   NS  +   +G
Sbjct: 65  EAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVVG 103

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* Length = 483

 Score = 41.4 bits (96), Expect = 5e-05
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 3  IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ 62
           +S+ L  +  +  R    DFD     ++G NG GKS  + G    L   +  +      
Sbjct: 9  FRSLTLINWNGFFARTF--DFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66

Query: 63 E 63
          E
Sbjct: 67 E 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.95
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.95
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.95
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.94
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.93
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.93
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.93
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.93
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.93
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.92
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.92
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.92
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.92
1g6h_A	257	High-affinity branched-chain amino acid transport	99.91
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.91
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.91
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.91
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.91
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.91
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.9
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.9
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.9
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.9
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.89
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.88
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.88
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.88
3kta_A	182	Chromosome segregation protein SMC; structural mai	99.88
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.88
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.87
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.86
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.86
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.86
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.86
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.85
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.85
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.85
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.85
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.81
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.81
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.81
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.8
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.79
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.77
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.76
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.74
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.74
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.72
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.72
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.71
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.7
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.68
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.67
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.67
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.66
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	99.63
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.63
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	99.6
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.51
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.49
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.49
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.48
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.47
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.46
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.45
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.43
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.41
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.4
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.39
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.39
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.36
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.34
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.33
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.32
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.32
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.3
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.25
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.23
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.2
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.19
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.16
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.16
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.16
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.13
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.12
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.11
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.07
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.06
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.04
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.03
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.03
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.0
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.96
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.95
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.94
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.9
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.9
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.9
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.89
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.87
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.85
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.85
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.85
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.83
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.83
2og2_A	359	Putative signal recognition particle receptor; nuc	98.82
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.82
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.82
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.8
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.8
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.79
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.78
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.77
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.77
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.77
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.75
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.75
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.74
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.74
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.71
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.71
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.7
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.7
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.67
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.62
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.61
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.6
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.58
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.57
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.56
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.55
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.53
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.53
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.51
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.5
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.5
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.49
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.47
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.46
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.46
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.45
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.43
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.39
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.39
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.39
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.37
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.37
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.37
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.36
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.34
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.32
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.3
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.3
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.29
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.25
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.23
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.22
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.18
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.18
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.16
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.15
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.15
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.13
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.12
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.11
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.07
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.04
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.02
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.01
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.01
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.0
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.99
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.99
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.98
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.97
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.97
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.97
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.96
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.95
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.95
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.94
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.93
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.92
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.9
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.87
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.86
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.84
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.83
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.82
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.81
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.8
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.78
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.76
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.74
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.73
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.71
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.7
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.7
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.7
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.69
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.66
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.66
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.66
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.65
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.65
1via_A	175	Shikimate kinase; structural genomics, transferase	97.64
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.62
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.62
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.61
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.6
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.6
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.59
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.59
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.58
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.57
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.56
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.56
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.55
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.53
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.53
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.52
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.51
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.49
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.47
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.46
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.46
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.45
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.44
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.44
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.43
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.43
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.42
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.41
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.41
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.4
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.39
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.34
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.34
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.32
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.32
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.32
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.32
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.3
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.3
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.3
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.29
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.29
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.29
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.29
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.28
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.28
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.28
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.28
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.28
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.27
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.27
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.27
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.27
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.26
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.26
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.26
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.25
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.25
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.24
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.24
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.23
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.23
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.23
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.22
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.22
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.22
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.22
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.21
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.21
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.21
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.21
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.21
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.21
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.21
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.2
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.2
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.2
3bos_A	242	Putative DNA replication factor; P-loop containing	97.2
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.2
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.19
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.19
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.19
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.19
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.19
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.19
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.19
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.17
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.17
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.17
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.17
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.17
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.17
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.17
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.16
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.16
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.16
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.16
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.16
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.15
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.15
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.15
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.15
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.15
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.15
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.14
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.14
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.13
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.13
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.13
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.13
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.13
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.13
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.12
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.12
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.12
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.12
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.11
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.11
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.11
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.11
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.11
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.1
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.1
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.09
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.09
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.09
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.08
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.08
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.08
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.08
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.08
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.08
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.07
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.07
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.07
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.07
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.07
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.06
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.05
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.05
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.05
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.05
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.04
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.03
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.03
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.03
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.03
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.03
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.02
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.02
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.02
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.02
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.01
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.01
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.01
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.01
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.01
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.0
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.99
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.99
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.99
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.98
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.98
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.98
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.96
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.96
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.94
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.93
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.93
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.92
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.92
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.91
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.9
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.89
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.89
3ice_A	422	Transcription termination factor RHO; transcriptio	96.89
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.88
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.88
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.87
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.87
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.87
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.87
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.85
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.84
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.84
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.84
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.84
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.83
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.83
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.83
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.82
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.81
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.81
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.81
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.8
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.8
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.79
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.79
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.79
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.78
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.78
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.77
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.77
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.76
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.76
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.75
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.74
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.73
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.73
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.72
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.71
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.69
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.68
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.66
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.65
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.64
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.64
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.62
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.59
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.59
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.58
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.58
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.58
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.57
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.56
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.56
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.56
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.54
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.53
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.53
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.51
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.51
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.51
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.49
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.49
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.49
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.49
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.48
3pvs_A	447	Replication-associated recombination protein A; ma	96.44
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	96.41
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.41
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.4
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.39
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.38
2qgz_A	308	Helicase loader, putative primosome component; str	96.38
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.37
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.36
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.35
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.34
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.34
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.33
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.32
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.31
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.29
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.28
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.28
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.27
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.27
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.25
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.25
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.24
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.22
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.21
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.18
3co5_A	143	Putative two-component system transcriptional RES	96.18
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.17
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.16
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.15
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.15
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.15
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	96.14
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.13
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.09
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.09
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.06
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	96.06
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.04
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.04
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.04
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.99
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.99
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	95.99
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.97
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.97
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.96
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	95.96
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	95.94
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.94

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.95  E-value=2.8e-31  Score=201.91  Aligned_cols=142  Identities=16%  Similarity=0.225  Sum_probs=112.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ ++|++..+|+++|     +++++|+|||||||||||++|+|++.|++|+|+++| +++..........++.|
T Consensus         4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G-~~i~~~~~~~~~~~r~i   82 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG-KTIFSKNTNLPVRERRL   82 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETT-EEEESSSCBCCGGGSCC
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECC-EECcccccccchhhCCE
Confidence            4899999 9999999999888     799999999999999999999999999999999988 33311011112234679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +|+||++         .+++++||.+|+.++...  +...+....+++.++++.++|..   ..|.+||+ |+   +|||
T Consensus        83 g~vfQ~~---------~l~p~ltV~eni~~~l~~--~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValAr  151 (359)
T 3fvq_A           83 GYLVQEG---------VLFPHLTVYRNIAYGLGN--GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALAR  151 (359)
T ss_dssp             EEECTTC---------CCCTTSCHHHHHHTTSTT--SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred             EEEeCCC---------cCCCCCCHHHHHHHHHHH--cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence            9999984         688999999999997541  11112233567889999999976   57889998 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       152 AL~~~P~  158 (359)
T 3fvq_A          152 ALAPDPE  158 (359)
T ss_dssp             HHTTCCS
T ss_pred             HHHcCCC
Confidence            9999996

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.95  E-value=3.5e-30  Score=197.07  Aligned_cols=142  Identities=17%  Similarity=0.241  Sum_probs=107.0

Q ss_pred             CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514          1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      |+|..|+++|+ ++|++..+|++++     +++++|+|||||||||||++|+|++.|++|+|+++| +++.. .   ...
T Consensus         7 ~~M~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g-~~i~~-~---~~~   81 (372)
T 1v43_A            7 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD-RDVTY-L---PPK   81 (372)
T ss_dssp             CCCCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTT-S---CGG
T ss_pred             eeeeeEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECC-EECCC-C---Chh
Confidence            33445999999 9999888888887     789999999999999999999999999999999988 33211 1   112


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---  147 (159)
                      ++.|+|+||++         .+++++||.+|+.++..  .+...+....+++.++++.++|..   ..|.+||+ |+   
T Consensus        82 ~r~ig~v~Q~~---------~l~~~ltv~eni~~~~~--~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv  150 (372)
T 1v43_A           82 DRNISMVFQSY---------AVWPHMTVYENIAFPLK--IKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV  150 (372)
T ss_dssp             GGTEEEEEC---------------CCCHHHHHHTTCC----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH
T ss_pred             hCcEEEEecCc---------ccCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence            45799999984         68899999999998753  211112222457889999999975   57889998 44   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      +|||+|+.+|+
T Consensus       151 alArAL~~~P~  161 (372)
T 1v43_A          151 AVARAIVVEPD  161 (372)
T ss_dssp             HHHHHHTTCCS
T ss_pred             HHHHHHhcCCC
Confidence            99999999996

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.95  E-value=7.1e-31  Score=200.97  Aligned_cols=138  Identities=20%  Similarity=0.248  Sum_probs=111.2

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..+|+++|     |++++|+|||||||||||++|+|+++|++|+|+++| +++.. .   ...++.|
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G-~~~~~-~---~~~~r~i   77 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE-KRMND-T---PPAERGV   77 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTT-C---CGGGSCE
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECC-EECCC-C---CHHHCCE
Confidence            4899999 9999999999887     799999999999999999999999999999999988 33321 1   1124579


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +++||++         .+++++||.+|+.++...  +...+....+++.++++.++|..   .+|.+||+ |+   +|||
T Consensus        78 g~VfQ~~---------~l~p~ltV~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiAr  146 (381)
T 3rlf_A           78 GMVFQSY---------ALYPHLSVAENMSFGLKL--AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGR  146 (381)
T ss_dssp             EEECTTC---------CCCTTSCHHHHHTHHHHH--TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred             EEEecCC---------cCCCCCCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHH
Confidence            9999985         689999999999986431  10112233567889999999975   67889998 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       147 AL~~~P~  153 (381)
T 3rlf_A          147 TLVAEPS  153 (381)
T ss_dssp             HHHHCCS
T ss_pred             HHHcCCC
Confidence            9999996

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.94  E-value=9.2e-30  Score=193.92  Aligned_cols=138  Identities=17%  Similarity=0.202  Sum_probs=109.5

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ ++|++..+|++++     +++++|+|||||||||||++|+|+++|++|+|+++| +++.. .   ...++.|
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g-~~i~~-~---~~~~r~i   77 (359)
T 2yyz_A            3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDD-VLVND-I---PPKYREV   77 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTT-S---CGGGTTE
T ss_pred             EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECC-EECCC-C---ChhhCcE
Confidence            3899999 9999888888887     789999999999999999999999999999999988 33211 1   1124569


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +|+||++         .+++++||.+|+.++...  ....+....+++.++++.++|..   ..|.+||+ |+   +|||
T Consensus        78 g~v~Q~~---------~l~~~ltv~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalAr  146 (359)
T 2yyz_A           78 GMVFQNY---------ALYPHMTVFENIAFPLRA--RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALAR  146 (359)
T ss_dssp             EEECSSC---------CCCTTSCHHHHHHGGGSS--SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred             EEEecCc---------ccCCCCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence            9999984         688999999999986431  10011223467899999999975   57889988 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       147 AL~~~P~  153 (359)
T 2yyz_A          147 ALVKQPK  153 (359)
T ss_dssp             HHTTCCS
T ss_pred             HHHcCCC
Confidence            9999996

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.93  E-value=1.8e-29  Score=192.49  Aligned_cols=138  Identities=20%  Similarity=0.295  Sum_probs=108.9

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..+|++++     +++++|+|||||||||||++|+|++.|++|+|+++| +++.. .   ...++.|
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g-~~i~~-~---~~~~r~i   77 (362)
T 2it1_A            3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDE-KDVTE-L---PPKDRNV   77 (362)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTT-S---CGGGTTE
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECC-EECCc-C---CHhHCcE
Confidence            3899999 9999888888887     789999999999999999999999999999999988 33211 1   1123569


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +|+||++         .+++++||.+|+.++...  ....+....+++.++++.++|..   ..|.+||+ |+   +|||
T Consensus        78 g~v~Q~~---------~l~~~ltv~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr  146 (362)
T 2it1_A           78 GLVFQNW---------ALYPHMTVYKNIAFPLEL--RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIAR  146 (362)
T ss_dssp             EEECTTC---------CCCTTSCHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred             EEEecCc---------ccCCCCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHH
Confidence            9999984         688999999999886321  00011223467889999999975   57889988 43   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       147 AL~~~P~  153 (362)
T 2it1_A          147 ALVKEPE  153 (362)
T ss_dssp             HHTTCCS
T ss_pred             HHHcCCC
Confidence            9999996

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.93  E-value=1.9e-29  Score=193.21  Aligned_cols=142  Identities=16%  Similarity=0.202  Sum_probs=109.2

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--CceeEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--AGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~~   76 (159)
                      .|+++|+ ++|++..+|++++     +++++|+|||||||||||++|+|++.|++|+|+++| +++......  ....++
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g-~~~~~~~~~~~~~~~~r   81 (372)
T 1g29_1            3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD-KLVADPEKGIFVPPKDR   81 (372)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT-EEEEEGGGTEECCGGGS
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECC-EECccccccccCCHhHC
Confidence            4899999 9999888888887     789999999999999999999999999999999987 332110000  111245


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      .|+|+||++         .+++++||.+|+.++..  .....+....+++.++++.++|..   ..|.+||+ |+   +|
T Consensus        82 ~ig~v~Q~~---------~l~~~ltv~eni~~~~~--~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval  150 (372)
T 1g29_1           82 DIAMVFQSY---------ALYPHMTVYDNIAFPLK--LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL  150 (372)
T ss_dssp             SEEEECSCC---------CCCTTSCHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             CEEEEeCCC---------ccCCCCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHH
Confidence            799999984         68899999999988632  100011223467889999999975   57889988 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      ||+|+.+|+
T Consensus       151 ArAL~~~P~  159 (372)
T 1g29_1          151 GRAIVRKPQ  159 (372)
T ss_dssp             HHHHHTCCS
T ss_pred             HHHHhcCCC
Confidence            999999996

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.93  E-value=2.3e-29  Score=191.64  Aligned_cols=142  Identities=14%  Similarity=0.172  Sum_probs=109.4

Q ss_pred             EEEEeCe-eeecCCe--eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh-CCCceeE
Q psy17514          5 SMVLDGF-KSYGTRV--EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN-GQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~--~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~   75 (159)
                      .|+++|+ +.|++..  +|++++     +++++|+|||||||||||++|+|++.|++|+|.++| +++.... ......+
T Consensus         3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g-~~i~~~~~~~~~~~~   81 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD-RLVASNGKLIVPPED   81 (353)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETT-EEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC-EECcccccccCChhh
Confidence            3899999 9998877  888887     789999999999999999999999999999999987 3321100 0011134


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R  148 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~  148 (159)
                      +.|+|+||++         .+++++||.+|+.++...  +........+++.++++.++|..   ..|.+||+ |+   +
T Consensus        82 r~ig~v~Q~~---------~l~~~ltv~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRva  150 (353)
T 1oxx_K           82 RKIGMVFQTW---------ALYPNLTAFENIAFPLTN--MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA  150 (353)
T ss_dssp             SCEEEEETTS---------CCCTTSCHHHHHHGGGTT--SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred             CCEEEEeCCC---------ccCCCCCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH
Confidence            6799999984         688999999999886431  00011223467889999999975   57889988 33   9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      |||+|+.+|+
T Consensus       151 lAraL~~~P~  160 (353)
T 1oxx_K          151 LARALVKDPS  160 (353)
T ss_dssp             HHHHHTTCCS
T ss_pred             HHHHHHhCCC
Confidence            9999999996

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.93  E-value=3.2e-29  Score=190.62  Aligned_cols=138  Identities=21%  Similarity=0.239  Sum_probs=109.2

Q ss_pred             EEEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ +.| ++..+|++++     +++++|+|||||||||||++|+|+++|++|+|+++| +++..    ....++.
T Consensus        14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g-~~i~~----~~~~~r~   88 (355)
T 1z47_A           14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG-KRVTD----LPPQKRN   88 (355)
T ss_dssp             EEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTT----CCGGGSS
T ss_pred             eEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC-EECCc----CChhhCc
Confidence            5899999 999 8777888887     789999999999999999999999999999999988 33211    1113467


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      |+++||++         .+++++||.+|+.++...  ....+....+++.++++.++|..   ..|.+||+ |+   +||
T Consensus        89 ig~v~Q~~---------~l~~~ltv~eni~~~l~~--~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalA  157 (355)
T 1z47_A           89 VGLVFQNY---------ALFQHMTVYDNVSFGLRE--KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA  157 (355)
T ss_dssp             EEEECGGG---------CCCTTSCHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             EEEEecCc---------ccCCCCCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence            99999984         688999999999886321  00011223467889999999975   57889988 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      |+|+.+|+
T Consensus       158 rAL~~~P~  165 (355)
T 1z47_A          158 RALAPRPQ  165 (355)
T ss_dssp             HHHTTCCS
T ss_pred             HHHHcCCC
Confidence            99999996

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.93  E-value=2e-28  Score=186.42  Aligned_cols=142  Identities=18%  Similarity=0.261  Sum_probs=108.0

Q ss_pred             EEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC-CCce
Q psy17514          5 SMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG-QAGV   73 (159)
Q Consensus         5 ~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~-~~~~   73 (159)
                      .|+++|+ +.|+.    ..+|+++|     |++++|+||||||||||+++|+|+++|++|+|.++| +++..... ....
T Consensus        24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G-~~i~~~~~~~~~~  102 (366)
T 3tui_C           24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG-QELTTLSESELTK  102 (366)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT-EECSSCCHHHHHH
T ss_pred             eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECC-EECCcCCHHHHHH
Confidence            5899999 99964    35788887     799999999999999999999999999999999987 33211000 0001


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--  147 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--  147 (159)
                      .++.|+|+||++         .+++.+||.+|+.++..  .....+....+++.++++.++|..   .+|.+||+ |+  
T Consensus       103 ~r~~Ig~v~Q~~---------~l~~~~TV~env~~~~~--~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQR  171 (366)
T 3tui_C          103 ARRQIGMIFQHF---------NLLSSRTVFGNVALPLE--LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR  171 (366)
T ss_dssp             HHTTEEEECSSC---------CCCTTSCHHHHHHHHHH--HSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHH
T ss_pred             HhCcEEEEeCCC---------ccCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHH
Confidence            245799999985         57888899999988643  111122233567889999999975   57889988 33  


Q ss_pred             -hHhHhhcCCCC
Q psy17514        148 -RVTKVLNMKPH  158 (159)
Q Consensus       148 -~ia~~l~~~p~  158 (159)
                       +|||||+.+|+
T Consensus       172 VaIArAL~~~P~  183 (366)
T 3tui_C          172 VAIARALASNPK  183 (366)
T ss_dssp             HHHHHHTTTCCS
T ss_pred             HHHHHHHhcCCC
Confidence             99999999996

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.92  E-value=4.2e-29  Score=184.51  Aligned_cols=143  Identities=19%  Similarity=0.288  Sum_probs=105.0

Q ss_pred             EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ ++|++ ..+|+++|     |++++|+||||||||||+++|+|+++|++|+|+++| +++..........++.
T Consensus         7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G-~~i~~~~~~~~~~~~~   85 (275)
T 3gfo_A            7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDN-KPIDYSRKGIMKLRES   85 (275)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EECCCSHHHHHHHHHS
T ss_pred             EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECC-EECCcccccHHHHhCc
Confidence            6999999 99975 45899888     799999999999999999999999999999999987 3220000000112457


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      |+++||++..       .++ .+||.+|+.++...  .........+++.++++.++|..   ..+..||+ |+   +||
T Consensus        86 ig~v~Q~~~~-------~~~-~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iA  155 (275)
T 3gfo_A           86 IGIVFQDPDN-------QLF-SASVYQDVSFGAVN--MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA  155 (275)
T ss_dssp             EEEECSSGGG-------TCC-SSBHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             EEEEEcCccc-------ccc-cCcHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence            9999998631       123 56999999875321  00112223467889999999975   56788888 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++|+.+|+
T Consensus       156 raL~~~P~  163 (275)
T 3gfo_A          156 GVLVMEPK  163 (275)
T ss_dssp             HHHTTCCS
T ss_pred             HHHHcCCC
Confidence            99999996

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.92  E-value=6.2e-28  Score=173.63  Aligned_cols=142  Identities=18%  Similarity=0.182  Sum_probs=105.6

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--CceeEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--AGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~~   76 (159)
                      .|+++|+ +.|++..+|+++|     +++++|+||||||||||+++|+|+++|++|+|+++| .++......  ....++
T Consensus         4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~~~~~~~~~~~~~   82 (224)
T 2pcj_A            4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG-KEVDYTNEKELSLLRNR   82 (224)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETT-EECCSSCHHHHHHHHHH
T ss_pred             EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EECCCCCHHHHHHHHhC
Confidence            5999999 9998888899888     789999999999999999999999999999999987 222100000  000125


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      .|+++||++         .+++.+||.+|+.++..  ..........+++.++++.++|..   ..+.+||+ |+   +|
T Consensus        83 ~i~~v~q~~---------~l~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l  151 (224)
T 2pcj_A           83 KLGFVFQFH---------YLIPELTALENVIVPML--KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI  151 (224)
T ss_dssp             HEEEECSSC---------CCCTTSCHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred             cEEEEecCc---------ccCCCCCHHHHHHhHHH--HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence            699999985         46777899999977422  100011122456888999999975   46778888 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |++|+.+|+
T Consensus       152 aral~~~p~  160 (224)
T 2pcj_A          152 ARALANEPI  160 (224)
T ss_dssp             HHHTTTCCS
T ss_pred             HHHHHcCCC
Confidence            999999996

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.92  E-value=2e-28  Score=185.92  Aligned_cols=133  Identities=15%  Similarity=0.241  Sum_probs=106.6

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ ++|++. +|++++     +++++|+|||||||||||++|+|++.|++|+|+++| +++..    ....++.|+
T Consensus         2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g-~~i~~----~~~~~r~ig   75 (348)
T 3d31_A            2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG-KDVTD----LSPEKHDIA   75 (348)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETT-EECTT----SCHHHHTCE
T ss_pred             EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC-EECCC----CchhhCcEE
Confidence            789999 999887 888887     789999999999999999999999999999999988 33211    111245799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      |+||++         .+++++||.+|+.++..  .+  +... .+++.++++.++|..   ..|.+||+ |+   +|||+
T Consensus        76 ~v~Q~~---------~l~~~ltv~enl~~~~~--~~--~~~~-~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAra  141 (348)
T 3d31_A           76 FVYQNY---------SLFPHMNVKKNLEFGMR--MK--KIKD-PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARA  141 (348)
T ss_dssp             EECTTC---------CCCTTSCHHHHHHHHHH--HH--CCCC-HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHH
T ss_pred             EEecCc---------ccCCCCCHHHHHHHHHH--Hc--CCCH-HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence            999984         68899999999988642  11  1111 267899999999975   57889988 43   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      |+.+|+
T Consensus       142 L~~~P~  147 (348)
T 3d31_A          142 LVTNPK  147 (348)
T ss_dssp             TTSCCS
T ss_pred             HHcCCC
Confidence            999996

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.92  E-value=1.5e-28  Score=180.54  Aligned_cols=142  Identities=16%  Similarity=0.253  Sum_probs=106.2

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC-ceeEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA-GVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~~~   77 (159)
                      .|+++|+ +.|++..+|++++     +++++|+|||||||||||++|+|+++|++|+|+++| +++. ..... ...++.
T Consensus        24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-~~i~-~~~~~~~~~~~~  101 (263)
T 2olj_A           24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG-INLK-AKDTNLNKVREE  101 (263)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EESS-STTCCHHHHHHH
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC-EECC-CccccHHHHhCc
Confidence            4899999 9998888899887     789999999999999999999999999999999988 3321 00000 112456


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia  150 (159)
                      |+++||++         .+++.+||.+|+.++....... ......+++.++++.++|..   ..+.+||+ |+   +||
T Consensus       102 i~~v~Q~~---------~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA  171 (263)
T 2olj_A          102 VGMVFQRF---------NLFPHMTVLNNITLAPMKVRKW-PREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA  171 (263)
T ss_dssp             EEEECSSC---------CCCTTSCHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             EEEEeCCC---------cCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence            99999985         4677789999997742000000 11122457888999999965   46778888 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++|+.+|+
T Consensus       172 raL~~~p~  179 (263)
T 2olj_A          172 RALAMEPK  179 (263)
T ss_dssp             HHHTTCCS
T ss_pred             HHHHCCCC
Confidence            99999996

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.91  E-value=4.5e-28  Score=177.63  Aligned_cols=143  Identities=15%  Similarity=0.182  Sum_probs=106.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..+|+++|     |++++|+||||||||||+++|+|+++|++|+|.++| +++.. .......++.|
T Consensus         7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i   84 (257)
T 1g6h_A            7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN-KDITN-KEPAELYHYGI   84 (257)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EECTT-CCHHHHHHHTE
T ss_pred             EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECCC-CCHHHHHhCCE
Confidence            5999999 9999888999998     689999999999999999999999999999999987 32210 00000123469


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCce-EEEE----------CCEEeCHHHHHHHHHhcCccc---CCCeeEE
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNT-RYMI----------NGSSVNPKRVSDLFSSVNLNV---NNPHFLI  144 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~-~~~~----------~~~~~~~~~~~~~l~~~~l~~---~~~~~l~  144 (159)
                      ++++|++         .+++++||.+|+.++... ....          .......+++.++++.++|..   ..+..||
T Consensus        85 ~~v~q~~---------~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS  155 (257)
T 1g6h_A           85 VRTFQTP---------QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS  155 (257)
T ss_dssp             EECCCCC---------GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred             EEEccCC---------ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCC
Confidence            9999985         467778999999875321 0000          011122457889999999975   4577888


Q ss_pred             e-Ch---hHhHhhcCCCC
Q psy17514        145 M-QG---RVTKVLNMKPH  158 (159)
Q Consensus       145 ~-q~---~ia~~l~~~p~  158 (159)
                      + |+   +||++|+.+|+
T Consensus       156 gGqkQrv~iAraL~~~p~  173 (257)
T 1g6h_A          156 GGQMKLVEIGRALMTNPK  173 (257)
T ss_dssp             HHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            8 33   99999999996

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.91  E-value=4.5e-28  Score=177.39  Aligned_cols=141  Identities=13%  Similarity=0.158  Sum_probs=105.9

Q ss_pred             EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      |..|+++|+ +.|++..+|++++     |++++|+|||||||||||++|+|+++|++|+|+++| .++..   .....++
T Consensus        13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-~~~~~---~~~~~~~   88 (256)
T 1vpl_A           13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG-KNVVE---EPHEVRK   88 (256)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EETTT---CHHHHHT
T ss_pred             CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EECCc---cHHHHhh
Confidence            446999999 9999888899887     789999999999999999999999999999999987 33211   0011235


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      .|++++|++         .+++.+||.+|+.+...  ..........+++.++++.++|..   ..+..||+ |+   +|
T Consensus        89 ~i~~v~q~~---------~l~~~ltv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~l  157 (256)
T 1vpl_A           89 LISYLPEEA---------GAYRNMQGIEYLRFVAG--FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLI  157 (256)
T ss_dssp             TEEEECTTC---------CCCTTSBHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHH
T ss_pred             cEEEEcCCC---------CCCCCCcHHHHHHHHHH--HcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHH
Confidence            699999985         46677899999977422  100011112356788999999975   45778888 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      |++|+.+|+
T Consensus       158 AraL~~~p~  166 (256)
T 1vpl_A          158 ARALMVNPR  166 (256)
T ss_dssp             HHHHTTCCS
T ss_pred             HHHHHcCCC
Confidence            999999996

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.91  E-value=1.4e-27  Score=173.43  Aligned_cols=140  Identities=16%  Similarity=0.218  Sum_probs=104.3

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ ++|++..+|++++     |++++|+|||||||||||++|+|+++|++|+|.++| .++.. .......++.|
T Consensus         6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i   83 (240)
T 1ji0_A            6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG-QDITN-KPAHVINRMGI   83 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EECTT-CCHHHHHHTTE
T ss_pred             eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCC-CCHHHHHhCCE
Confidence            5999999 9998888899887     789999999999999999999999999999999987 32210 00000113359


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcC-ccc---CCCeeEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVN-LNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~---~~~~~l~~-q~---~ia  150 (159)
                      ++++|++         .+++.+||.+|+.++....  . ......+.+.++++.++ |..   ..+..||+ |+   +||
T Consensus        84 ~~v~q~~---------~l~~~ltv~enl~~~~~~~--~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lA  151 (240)
T 1ji0_A           84 ALVPEGR---------RIFPELTVYENLMMGAYNR--K-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG  151 (240)
T ss_dssp             EEECSSC---------CCCTTSBHHHHHHGGGTTC--C-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHH
T ss_pred             EEEecCC---------ccCCCCcHHHHHHHhhhcC--C-CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHH
Confidence            9999985         4677789999998753111  1 11122356778888884 754   45778888 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      |+|+.+|+
T Consensus       152 raL~~~p~  159 (240)
T 1ji0_A          152 RALMSRPK  159 (240)
T ss_dssp             HHHTTCCS
T ss_pred             HHHHcCCC
Confidence            99999996

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.91  E-value=2e-27  Score=174.87  Aligned_cols=138  Identities=18%  Similarity=0.169  Sum_probs=106.3

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..+|+++|     |++++|+||||||||||+++|+|+++|++|+|+++| +++... . ....++.+
T Consensus        11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-~~~~~~-~-~~~~~~~i   87 (266)
T 4g1u_C           11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG-QNLNSW-Q-PKALARTR   87 (266)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT-EETTTS-C-HHHHHHHE
T ss_pred             eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-EECCcC-C-HHHHhheE
Confidence            5899999 9999999999988     799999999999999999999999999999999988 332110 0 01123468


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h-hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G-RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~-~ia~  151 (159)
                      ++++|++         .+++.+||.+|+.++....    ......+++.++++.++|..   ..+.+||+ |  + +|||
T Consensus        88 ~~v~q~~---------~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAr  154 (266)
T 4g1u_C           88 AVMRQYS---------ELAFPFSVSEVIQMGRAPY----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLAR  154 (266)
T ss_dssp             EEECSCC---------CCCSCCBHHHHHHGGGTTS----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHH
T ss_pred             EEEecCC---------ccCCCCCHHHHHHhhhhhc----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHH
Confidence            9999985         3455679999998764311    12223567889999999875   45678888 3  3 9999


Q ss_pred             hhcC------CCC
Q psy17514        152 VLNM------KPH  158 (159)
Q Consensus       152 ~l~~------~p~  158 (159)
                      +|+.      +|+
T Consensus       155 aL~~~~~~~~~p~  167 (266)
T 4g1u_C          155 VLAQLWQPQPTPR  167 (266)
T ss_dssp             HHHHTCCSSCCCE
T ss_pred             HHhcccccCCCCC
Confidence            9998      885

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.91  E-value=2.1e-27  Score=174.44  Aligned_cols=143  Identities=17%  Similarity=0.261  Sum_probs=105.5

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHH----------hh
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIY----------KN   68 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~----------~~   68 (159)
                      .|+++|+ +.|++..+|+++|     |++++|+|||||||||||++|+|+++|++|+|+++| .++..          ..
T Consensus         6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g-~~~~~~~~~~~~~~~~~   84 (262)
T 1b0u_A            6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG-QNINLVRDKDGQLKVAD   84 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EECCEEECTTSSEEESC
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EEccccccccccccccC
Confidence            5999999 9998888899887     789999999999999999999999999999999987 22210          00


Q ss_pred             -CCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeE
Q psy17514         69 -GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFL  143 (159)
Q Consensus        69 -~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l  143 (159)
                       ......++.|+++||++         .+++.+||.+|+.++....... ......+++.++++.++|..    ..+..|
T Consensus        85 ~~~~~~~~~~i~~v~Q~~---------~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L  154 (262)
T 1b0u_A           85 KNQLRLLRTRLTMVFQHF---------NLWSHMTVLENVMEAPIQVLGL-SKHDARERALKYLAKVGIDERAQGKYPVHL  154 (262)
T ss_dssp             HHHHHHHHHHEEEECSSC---------CCCTTSCHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred             hhhHHHHhcceEEEecCc---------ccCCCCcHHHHHHhhHHHhcCC-CHHHHHHHHHHHHHHcCCCchhhcCCcccC
Confidence             00001235699999985         4677889999998742000000 11122457888999999853    467888


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +|||+|+.+|+
T Consensus       155 SgGq~qRv~lAraL~~~p~  173 (262)
T 1b0u_A          155 SGGQQQRVSIARALAMEPD  173 (262)
T ss_dssp             CHHHHHHHHHHHHHHTCCS
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            88 33   99999999996

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.91  E-value=3.8e-27  Score=170.61  Aligned_cols=143  Identities=17%  Similarity=0.252  Sum_probs=103.7

Q ss_pred             EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--Cce
Q psy17514          6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--AGV   73 (159)
Q Consensus         6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~~~   73 (159)
                      |+++|+ +.|+.    ..+|+++|     +++++|+|||||||||||++|+|+++|++|+|.++| .++......  ...
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-~~~~~~~~~~~~~~   80 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN-IKTNDLDDDELTKI   80 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EECTTCCHHHHHHH
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECC-EEcccCCHHHHHHH
Confidence            789999 99973    35788887     799999999999999999999999999999999987 222100000  001


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE-ECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM-INGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG  147 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~  147 (159)
                      .++.|+++||++         .+++.+||.+|+.++...... ........+++.++++.++|..    ..+.+||+ |+
T Consensus        81 ~~~~i~~v~Q~~---------~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~  151 (235)
T 3tif_A           81 RRDKIGFVFQQF---------NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQ  151 (235)
T ss_dssp             HHHHEEEECTTC---------CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHH
T ss_pred             hhccEEEEecCC---------ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHH
Confidence            134699999986         477788999999774220000 0012223457788999999864    45788888 33


Q ss_pred             ---hHhHhhcCCCC
Q psy17514        148 ---RVTKVLNMKPH  158 (159)
Q Consensus       148 ---~ia~~l~~~p~  158 (159)
                         +|||+|+.+|+
T Consensus       152 QRv~iAral~~~p~  165 (235)
T 3tif_A          152 QRVAIARALANNPP  165 (235)
T ss_dssp             HHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHcCCC
Confidence               99999999996

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.90  E-value=1.5e-26  Score=165.15  Aligned_cols=133  Identities=15%  Similarity=0.162  Sum_probs=104.7

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      +.|+++|+ +.|++ .+|.+++     +++++|+|||||||||||++|+|+++|++|+|.++| .++.       ..++.
T Consensus         9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-~~~~-------~~~~~   79 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG-VPIT-------KVKGK   79 (214)
T ss_dssp             CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EEGG-------GGGGG
T ss_pred             ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC-EEhh-------hhcCc
Confidence            46999999 99988 8999888     789999999999999999999999999999999987 3321       12456


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--CCCeeEEe-Ch---hHhH
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~l~~-q~---~ia~  151 (159)
                      |++++|++         .+++.+||.+|+.++..  .  .+.....+++.++++.++|..  ..+..+|+ |+   +||+
T Consensus        80 i~~v~q~~---------~~~~~~tv~enl~~~~~--~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~lar  146 (214)
T 1sgw_A           80 IFFLPEEI---------IVPRKISVEDYLKAVAS--L--YGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLAS  146 (214)
T ss_dssp             EEEECSSC---------CCCTTSBHHHHHHHHHH--H--TTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHH
T ss_pred             EEEEeCCC---------cCCCCCCHHHHHHHHHH--h--cCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHH
Confidence            99999986         35677899999977422  1  010112567889999999874  44667777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       147 aL~~~p~  153 (214)
T 1sgw_A          147 TLLVNAE  153 (214)
T ss_dssp             HTTSCCS
T ss_pred             HHHhCCC
Confidence            9999996

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.90  E-value=3e-26  Score=168.67  Aligned_cols=136  Identities=13%  Similarity=0.182  Sum_probs=104.3

Q ss_pred             EEEeCe-eeec--C---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514          6 MVLDGF-KSYG--T---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         6 l~l~~~-~~~~--~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      |+++|+ +.|+  +   ..+|+++|     |++++|+|||||||||||++|+|+++|++|+|+++| .++.. .    ..
T Consensus         3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-~~~~~-~----~~   76 (266)
T 2yz2_A            3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG-ERKKG-Y----EI   76 (266)
T ss_dssp             EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EECCH-H----HH
T ss_pred             EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC-EECch-H----Hh
Confidence            789999 9997  4   56888887     789999999999999999999999999999999987 22211 0    12


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc--c---CCCeeEEe-Ch-
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN--V---NNPHFLIM-QG-  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~---~~~~~l~~-q~-  147 (159)
                      ++.|++++|++.        ..++.+||.+|+.++....  . ......+++.++++.++|.  .   ..+..||+ |+ 
T Consensus        77 ~~~i~~v~q~~~--------~~~~~~tv~enl~~~~~~~--~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~q  145 (266)
T 2yz2_A           77 RRNIGIAFQYPE--------DQFFAERVFDEVAFAVKNF--Y-PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR  145 (266)
T ss_dssp             GGGEEEECSSGG--------GGCCCSSHHHHHHHTTTTT--C-TTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHH
T ss_pred             hhhEEEEeccch--------hhcCCCcHHHHHHHHHHhc--C-CHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHH
Confidence            356999999841        2345579999998864311  1 2223456789999999998  4   56778888 33 


Q ss_pred             --hHhHhhcCCCC
Q psy17514        148 --RVTKVLNMKPH  158 (159)
Q Consensus       148 --~ia~~l~~~p~  158 (159)
                        +||++|+.+|+
T Consensus       146 Rv~lAraL~~~p~  158 (266)
T 2yz2_A          146 RVAIASVIVHEPD  158 (266)
T ss_dssp             HHHHHHHHTTCCS
T ss_pred             HHHHHHHHHcCCC
Confidence              99999999996

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.90  E-value=6.2e-26  Score=167.93  Aligned_cols=146  Identities=11%  Similarity=0.072  Sum_probs=103.3

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++..+|++++     |++++|+|||||||||||++|+|+++|++|+|.++| .++..........++.|
T Consensus        21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-~~~~~~~~~~~~~~~~i   99 (279)
T 2ihy_A           21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG-KMPGKVGYSAETVRQHI   99 (279)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-BCCC---CCHHHHHTTE
T ss_pred             eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECC-EEcccccCCHHHHcCcE
Confidence            4899999 9999888899888     789999999999999999999999999999999987 22210000001123569


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC--EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING--SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV  149 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i  149 (159)
                      ++++|++..       .+.+.+||.+|+.++........+  .....+++.++++.++|..   ..+..||+ |+   +|
T Consensus       100 ~~v~Q~~~~-------~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l  172 (279)
T 2ihy_A          100 GFVSHSLLE-------KFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI  172 (279)
T ss_dssp             EEECHHHHT-------TSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred             EEEEcCccc-------ccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence            999998521       122346999999876321111111  1122456888999999965   45778888 33   99


Q ss_pred             hHhhcCCCC
Q psy17514        150 TKVLNMKPH  158 (159)
Q Consensus       150 a~~l~~~p~  158 (159)
                      ||+|+.+|+
T Consensus       173 AraL~~~p~  181 (279)
T 2ihy_A          173 ARALMGQPQ  181 (279)
T ss_dssp             HHHHHTCCS
T ss_pred             HHHHhCCCC
Confidence            999999996

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.90  E-value=1.2e-25  Score=164.26  Aligned_cols=129  Identities=13%  Similarity=0.109  Sum_probs=100.7

Q ss_pred             EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ +.|+ +..+|+++|     |++++|+|||||||||||++|+|+++|++|+|..                ++.
T Consensus         4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~----------------~~~   67 (253)
T 2nq2_C            4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV----------------YQS   67 (253)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE----------------CSC
T ss_pred             eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE----------------ecc
Confidence            5899999 9998 788899887     7899999999999999999999999999999871                235


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC--CEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN--GSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R  148 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~  148 (159)
                      |++++|++         .+++.+||.+|+.++........  ......+++.++++.++|..   ..+..+|+ |+   +
T Consensus        68 i~~v~q~~---------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~  138 (253)
T 2nq2_C           68 IGFVPQFF---------SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLIL  138 (253)
T ss_dssp             EEEECSCC---------CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred             EEEEcCCC---------ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHH
Confidence            99999985         35667899999987532100000  11122456888999999975   45778888 33   9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      |||+|+.+|+
T Consensus       139 lAraL~~~p~  148 (253)
T 2nq2_C          139 IARAIASECK  148 (253)
T ss_dssp             HHHHHHTTCS
T ss_pred             HHHHHHcCCC
Confidence            9999999996

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.89  E-value=2e-26  Score=167.22  Aligned_cols=133  Identities=17%  Similarity=0.214  Sum_probs=101.6

Q ss_pred             EEEeCe-eeecCCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |+++|+ +.|++  +|++++    .++++|+|||||||||||++|+|+++|++|+|+++| .++.. .   ...++.|++
T Consensus         2 l~~~~l~~~y~~--~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~---~~~~~~i~~   74 (240)
T 2onk_A            2 FLKVRAEKRLGN--FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG-ADITP-L---PPERRGIGF   74 (240)
T ss_dssp             CEEEEEEEEETT--EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTT-S---CTTTSCCBC
T ss_pred             EEEEEEEEEeCC--EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECCc-C---chhhCcEEE
Confidence            689999 99975  367665    378999999999999999999999999999999988 33211 1   112456999


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhh
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVL  153 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l  153 (159)
                      +||++         .+++.+||.+|+.++...    .+.....+++.++++.++|..   ..+.++|+ |+   +|||+|
T Consensus        75 v~q~~---------~l~~~ltv~enl~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral  141 (240)
T 2onk_A           75 VPQDY---------ALFPHLSVYRNIAYGLRN----VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL  141 (240)
T ss_dssp             CCSSC---------CCCTTSCHHHHHHTTCTT----SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             EcCCC---------ccCCCCcHHHHHHHHHHH----cCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence            99985         467778999999886431    111112467889999999965   46778888 33   999999


Q ss_pred             cCCCC
Q psy17514        154 NMKPH  158 (159)
Q Consensus       154 ~~~p~  158 (159)
                      +.+|+
T Consensus       142 ~~~p~  146 (240)
T 2onk_A          142 VIQPR  146 (240)
T ss_dssp             TTCCS
T ss_pred             HcCCC
Confidence            99996

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.88  E-value=4.4e-25  Score=160.55  Aligned_cols=133  Identities=11%  Similarity=0.081  Sum_probs=99.9

Q ss_pred             EEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      |+++|+ +.| ++..+|+++|     |++++|+|||||||||||++|+|+++|++|+|.++| .++.. .. ....++.|
T Consensus         2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~-~~~~~~~i   78 (243)
T 1mv5_A            2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG-QPIDN-IS-LENWRSQI   78 (243)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETT-EESTT-TS-CSCCTTTC
T ss_pred             EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EEhhh-CC-HHHHHhhE
Confidence            789999 999 5677888887     789999999999999999999999999999999988 33211 11 11134569


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeEE
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFLI  144 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l~  144 (159)
                      ++++|++         .+++ .||.+|+.++...       ....+++.++++.+++..              ..+..+|
T Consensus        79 ~~v~q~~---------~l~~-~tv~enl~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS  141 (243)
T 1mv5_A           79 GFVSQDS---------AIMA-GTIRENLTYGLEG-------DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS  141 (243)
T ss_dssp             CEECCSS---------CCCC-EEHHHHTTSCTTS-------CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCC
T ss_pred             EEEcCCC---------cccc-ccHHHHHhhhccC-------CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCC
Confidence            9999985         3555 5999999876221       123456778888887753              1235777


Q ss_pred             e-Ch---hHhHhhcCCCC
Q psy17514        145 M-QG---RVTKVLNMKPH  158 (159)
Q Consensus       145 ~-q~---~ia~~l~~~p~  158 (159)
                      + |+   +|||+|+.+|+
T Consensus       142 gGq~qrv~lAral~~~p~  159 (243)
T 1mv5_A          142 GGQRQRLAIARAFLRNPK  159 (243)
T ss_dssp             HHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            7 33   99999999996

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.88  E-value=3.3e-25  Score=170.48  Aligned_cols=131  Identities=11%  Similarity=0.121  Sum_probs=101.9

Q ss_pred             EEEEeCe-eee--cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSY--GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~--~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ ++|  ++..+|+++|     +++++|+|||||||||||++|+|++. ++|+|+++| +++... . ....++
T Consensus        19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G-~~i~~~-~-~~~~rr   94 (390)
T 3gd7_A           19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDG-VSWDSI-T-LEQWRK   94 (390)
T ss_dssp             CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESS-CBTTSS-C-HHHHHH
T ss_pred             eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECC-EECCcC-C-hHHHhC
Confidence            4899999 999  5677888887     79999999999999999999999998 899999988 332110 0 011246


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCee-----------
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHF-----------  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~-----------  142 (159)
                      .|+++||++         .+|+ +||.+|+.+...         ...+++.++++.++|..   ..|..           
T Consensus        95 ~ig~v~Q~~---------~lf~-~tv~enl~~~~~---------~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~  155 (390)
T 3gd7_A           95 AFGVIPQKV---------FIFS-GTFRKNLDPNAA---------HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCV  155 (390)
T ss_dssp             TEEEESCCC---------CCCS-EEHHHHHCTTCC---------SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTT
T ss_pred             CEEEEcCCc---------ccCc-cCHHHHhhhccc---------cCHHHHHHHHHHhCCHHHHhhccccccccccccccc
Confidence            799999985         4666 699999875321         23567889999999975   55666           


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      ||+ |+   +|||+|+.+|+
T Consensus       156 LSGGqrQRvalARAL~~~P~  175 (390)
T 3gd7_A          156 LSHGHKQLMCLARSVLSKAK  175 (390)
T ss_dssp             SCHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            787 33   99999999996

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.88  E-value=3.5e-25  Score=161.38  Aligned_cols=133  Identities=18%  Similarity=0.191  Sum_probs=99.0

Q ss_pred             EEEEeCe-eee--cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSY--GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~--~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .++++|+ ++|  ++..+|+++|     |++++|+|||||||||||++|+|+++|++|+|.++| .++.. .. ....++
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g-~~~~~-~~-~~~~~~   83 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG-HDLAL-AD-PNWLRR   83 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EETTT-SC-HHHHHH
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EEhhh-CC-HHHHHh
Confidence            5899999 999  4677888887     789999999999999999999999999999999987 33211 00 011245


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++++|++         .+++ .||.+|+.++..      .  ...+++.++++.+++..              ..+..
T Consensus        84 ~i~~v~Q~~---------~l~~-~tv~enl~~~~~------~--~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~  145 (247)
T 2ff7_A           84 QVGVVLQDN---------VLLN-RSIIDNISLANP------G--MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG  145 (247)
T ss_dssp             HEEEECSSC---------CCTT-SBHHHHHTTTCT------T--CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTC
T ss_pred             cEEEEeCCC---------cccc-ccHHHHHhccCC------C--CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCC
Confidence            699999986         3455 499999987531      1  12456667777777643              13467


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      ||+ |+   +|||+|+.+|+
T Consensus       146 LSgGq~qRv~iAraL~~~p~  165 (247)
T 2ff7_A          146 LSGGQRQRIAIARALVNNPK  165 (247)
T ss_dssp             CCHHHHHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            887 33   99999999996

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=99.88  E-value=1.5e-21  Score=135.66  Aligned_cols=153  Identities=31%  Similarity=0.548  Sum_probs=109.2

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhh-hHHHHHHhhCC--CceeEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN-TLQELIYKNGQ--AGVTKAS   77 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~-~~~~~~~~~~~--~~~~~~~   77 (159)
                      |++..|+++||++|++..+-.+++.++++|+||||||||||+++|++++.+..|..... ...++++....  .....+.
T Consensus         2 M~i~~l~i~nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   81 (182)
T 3kta_A            2 PYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAE   81 (182)
T ss_dssp             CEEEEEEEESBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEE
T ss_pred             ceEEEEEEeCeEeecCccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEE
Confidence            66889999999999532222467777999999999999999999999998876543222 22233322110  0124578


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP  157 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p  157 (159)
                      |.++||++.....+    ....+++.+.+.......+.+++.....+++.++++.+++..+.. .+.+|+++.+++..+|
T Consensus        82 v~~~f~~~~~~~~~----~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~-~~~~qg~~~~l~~~~~  156 (182)
T 3kta_A           82 VAIYFNNEDRGFPI----DEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGY-NIVLQGDITKFIKMSP  156 (182)
T ss_dssp             EEEEEECTTCCSSS----SSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCT-TEECTTCTTHHHHSCH
T ss_pred             EEEEEeCCCccccc----CCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCC-EEEEcccHHHHHhCCH
Confidence            99999987543211    123578888887655566888999888899999999999987655 4677988888777766


Q ss_pred             C
Q psy17514        158 H  158 (159)
Q Consensus       158 ~  158 (159)
                      .
T Consensus       157 ~  157 (182)
T 3kta_A          157 L  157 (182)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.88  E-value=1.8e-26  Score=168.52  Aligned_cols=143  Identities=11%  Similarity=0.161  Sum_probs=98.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHH--hCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFV--LGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~--~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ +.|++..+|+++|     |++++|+||||||||||+++|+|+  ++|++|+|+++| .++.. .......+.
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g-~~~~~-~~~~~~~~~   80 (250)
T 2d2e_A            3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG-ENILE-LSPDERARK   80 (250)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETT-EECTT-SCHHHHHHT
T ss_pred             eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECC-EECCC-CCHHHHHhC
Confidence            4899999 9998888899887     789999999999999999999998  788999999987 32210 000000123


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCcc-c---CCCee-EEe-Ch--
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLN-V---NNPHF-LIM-QG--  147 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~---~~~~~-l~~-q~--  147 (159)
                      .+++++|++         .+++.+|+.+|+.++....... .......+++.++++.++|. .   ..+.. ||+ |+  
T Consensus        81 ~i~~v~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQr  151 (250)
T 2d2e_A           81 GLFLAFQYP---------VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKR  151 (250)
T ss_dssp             TBCCCCCCC---------C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHH
T ss_pred             cEEEeccCC---------ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence            478899985         4667789999887642100000 01111235678899999994 3   44566 888 33  


Q ss_pred             -hHhHhhcCCCC
Q psy17514        148 -RVTKVLNMKPH  158 (159)
Q Consensus       148 -~ia~~l~~~p~  158 (159)
                       +|||+|+.+|+
T Consensus       152 v~iAraL~~~p~  163 (250)
T 2d2e_A          152 NEILQLLVLEPT  163 (250)
T ss_dssp             HHHHHHHHHCCS
T ss_pred             HHHHHHHHcCCC
Confidence             99999999996

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.87  E-value=7.7e-25  Score=163.74  Aligned_cols=133  Identities=17%  Similarity=0.184  Sum_probs=98.7

Q ss_pred             EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ +.|+ +..+|++++     +++++|+||||||||||+++|+|++.|++|+|.++| .++....  ....++.
T Consensus        53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G-~~i~~~~--~~~~r~~  129 (306)
T 3nh6_A           53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDG-QDISQVT--QASLRSH  129 (306)
T ss_dssp             CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETT-EETTSBC--HHHHHHT
T ss_pred             eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECC-EEcccCC--HHHHhcc
Confidence            4899999 9995 567889887     799999999999999999999999999999999988 3321100  0113567


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l  143 (159)
                      |++|+|++         .+|+ .||.+|+.++...        ....++.++++.+++..              .....|
T Consensus       130 i~~v~Q~~---------~lf~-~Tv~eNi~~~~~~--------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~L  191 (306)
T 3nh6_A          130 IGVVPQDT---------VLFN-DTIADNIRYGRVT--------AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKL  191 (306)
T ss_dssp             EEEECSSC---------CCCS-EEHHHHHHTTSTT--------CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCC
T ss_pred             eEEEecCC---------ccCc-ccHHHHHHhhccc--------CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCC
Confidence            99999986         3554 5999999987431        12345555555554432              344678


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +|||+|+.+|+
T Consensus       192 SGGqrQRvaiARAL~~~p~  210 (306)
T 3nh6_A          192 SGGEKQRVAIARTILKAPG  210 (306)
T ss_dssp             CHHHHHHHHHHHHHHHCCS
T ss_pred             CHHHHHHHHHHHHHHhCCC
Confidence            77 43   99999999986

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.86  E-value=9.6e-25  Score=161.03  Aligned_cols=138  Identities=14%  Similarity=0.091  Sum_probs=98.4

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ +.|++   ..+|.+++     +++++|+|||||||||||++|+|+++|++|+|.++| .++.. .. ....+
T Consensus        16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g-~~i~~-~~-~~~~~   92 (271)
T 2ixe_A           16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG-EPLVQ-YD-HHYLH   92 (271)
T ss_dssp             CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EEGGG-BC-HHHHH
T ss_pred             eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC-EEccc-CC-HHHHh
Confidence            4899999 99976   67888887     789999999999999999999999999999999987 33211 00 01124


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeC-----HHHHHHHHHhc--Cccc---CCCeeEEe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVN-----PKRVSDLFSSV--NLNV---NNPHFLIM  145 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~---~~~~~l~~  145 (159)
                      +.|+|++|++         .+++ .||.+|+.++... .  ......     ...+.++++.+  ++..   ..+..||+
T Consensus        93 ~~i~~v~Q~~---------~l~~-~tv~enl~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSg  159 (271)
T 2ixe_A           93 TQVAAVGQEP---------LLFG-RSFRENIAYGLTR-T--PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSG  159 (271)
T ss_dssp             HHEEEECSSC---------CCCS-SBHHHHHHTTCSS-C--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCH
T ss_pred             ccEEEEecCC---------cccc-ccHHHHHhhhccc-C--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCH
Confidence            5699999986         3555 4999999886421 1  010000     11234566666  5643   45677888


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   +|||+|+.+|+
T Consensus       160 Gq~QRv~lAraL~~~p~  176 (271)
T 2ixe_A          160 GQRQAVALARALIRKPR  176 (271)
T ss_dssp             HHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence             33   99999999996

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.86  E-value=5.9e-25  Score=160.28  Aligned_cols=130  Identities=15%  Similarity=0.140  Sum_probs=98.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.    .+|++++     |++++|+|||||||||||++|+|+++|+ |+|.++| .++.. .. ....++.+
T Consensus         4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g-~~~~~-~~-~~~~~~~i   75 (249)
T 2qi9_C            4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAG-QPLEA-WS-ATKLALHR   75 (249)
T ss_dssp             EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETT-EEGGG-SC-HHHHHHHE
T ss_pred             EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECC-EECCc-CC-HHHHhceE
Confidence            4899999 55    5677777     7899999999999999999999999999 9999987 33211 00 01124569


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +|++|++         .+++.+||.+|+.++...     ..  ..+++.++++.++|..   ..+..||+ |+   +||+
T Consensus        76 ~~v~q~~---------~~~~~~tv~e~l~~~~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAr  139 (249)
T 2qi9_C           76 AYLSQQQ---------TPPFATPVWHYLTLHQHD-----KT--RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAA  139 (249)
T ss_dssp             EEECSCC---------CCCTTCBHHHHHHTTCSS-----TT--CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHH
T ss_pred             EEECCCC---------ccCCCCcHHHHHHHhhcc-----CC--cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence            9999985         356678999999875321     11  1567889999999975   45778888 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       140 aL~~~p~  146 (249)
T 2qi9_C          140 VVLQITP  146 (249)
T ss_dssp             HHHHHCT
T ss_pred             HHHcCCC
Confidence            9999987

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.86  E-value=1.1e-23  Score=152.66  Aligned_cols=122  Identities=13%  Similarity=0.113  Sum_probs=90.0

Q ss_pred             EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ +.|+  +..+|++++     +++++|+|||||||||||++|+|+++|++|+|.++|                
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----------------   66 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----------------   66 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----------------
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----------------
Confidence            4899999 9997  467888887     789999999999999999999999999999998866                


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHH---HHhcCcc--------cCCCeeEEe
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDL---FSSVNLN--------VNNPHFLIM  145 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~---l~~~~l~--------~~~~~~l~~  145 (159)
                      .|++++|++          .++..||.+|+.++..  +  ..  ...+++.+.   ++.+++.        ...+..+|+
T Consensus        67 ~i~~v~Q~~----------~~~~~tv~enl~~~~~--~--~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSg  130 (237)
T 2cbz_A           67 SVAYVPQQA----------WIQNDSLRENILFGCQ--L--EE--PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSG  130 (237)
T ss_dssp             CEEEECSSC----------CCCSEEHHHHHHTTSC--C--CT--THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCH
T ss_pred             EEEEEcCCC----------cCCCcCHHHHhhCccc--c--CH--HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCH
Confidence            289999985          2346799999988642  1  11  111222222   1222221        245678888


Q ss_pred             -Ch---hHhHhhcCCCC
Q psy17514        146 -QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 -q~---~ia~~l~~~p~  158 (159)
                       |+   +|||+|+.+|+
T Consensus       131 GqkqRv~lAraL~~~p~  147 (237)
T 2cbz_A          131 GQKQRVSLARAVYSNAD  147 (237)
T ss_dssp             HHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence             33   99999999996

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.86  E-value=3.8e-25  Score=162.88  Aligned_cols=143  Identities=10%  Similarity=0.086  Sum_probs=99.9

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ +.|+++.+|++++     |++++|+|||||||||||++|+|++  .|++|+|.++| .++.. .......+.
T Consensus        20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g-~~i~~-~~~~~~~~~   97 (267)
T 2zu0_C           20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG-KDLLA-LSPEDRAGE   97 (267)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT-EEGGG-SCHHHHHHH
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC-EECCc-CCHHHHhhC
Confidence            4899999 9998888899887     7899999999999999999999994  68899999987 33211 000001123


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE---EEEC--CEEeCHHHHHHHHHhcCcc-c--C-CCe-eEEe-
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR---YMIN--GSSVNPKRVSDLFSSVNLN-V--N-NPH-FLIM-  145 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~---~~~~--~~~~~~~~~~~~l~~~~l~-~--~-~~~-~l~~-  145 (159)
                      .|++++|++         .+++.+|+.+++.+.....   +...  ......+++.++++.++|. .  + .+. .||+ 
T Consensus        98 ~i~~v~Q~~---------~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgG  168 (267)
T 2zu0_C           98 GIFMAFQYP---------VEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGG  168 (267)
T ss_dssp             TEEEECSSC---------CCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHH
T ss_pred             CEEEEccCc---------cccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHH
Confidence            489999986         4567778888775431100   0000  1111235678899999995 2  3 344 4888 


Q ss_pred             Ch---hHhHhhcCCCC
Q psy17514        146 QG---RVTKVLNMKPH  158 (159)
Q Consensus       146 q~---~ia~~l~~~p~  158 (159)
                      |+   +|||+|+.+|+
T Consensus       169 q~QRv~iAraL~~~p~  184 (267)
T 2zu0_C          169 EKKRNDILQMAVLEPE  184 (267)
T ss_dssp             HHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            33   99999999996

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.85  E-value=4.4e-23  Score=148.76  Aligned_cols=120  Identities=15%  Similarity=0.178  Sum_probs=90.5

Q ss_pred             EEEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          4 KSMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         4 ~~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      ..|+++|+ +.|+  +..+|++++     |++++|+|||||||||||++|+|+++|++|+|.++|               
T Consensus         5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---------------   69 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------------   69 (229)
T ss_dssp             EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred             ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence            36999999 9995  467888887     789999999999999999999999999999998865               


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~  141 (159)
                       .|++++|++         .+++. ||.+|+.++..  +       ...++.++++.+++..              ..+.
T Consensus        70 -~i~~v~q~~---------~~~~~-tv~enl~~~~~--~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  129 (229)
T 2pze_A           70 -RISFCSQFS---------WIMPG-TIKENIIFGVS--Y-------DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI  129 (229)
T ss_dssp             -CEEEECSSC---------CCCSB-CHHHHHHTTSC--C-------CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCT
T ss_pred             -EEEEEecCC---------cccCC-CHHHHhhccCC--c-------ChHHHHHHHHHhCcHHHHHhCcccccccccCCCC
Confidence             389999986         35564 99999987632  1       1122334444444321              1235


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      .+|+ |+   +|||+++.+|+
T Consensus       130 ~LSgGqkqrv~lAral~~~p~  150 (229)
T 2pze_A          130 TLSGGQRARISLARAVYKDAD  150 (229)
T ss_dssp             TSCHHHHHHHHHHHHHHSCCS
T ss_pred             cCCHHHHHHHHHHHHHhcCCC
Confidence            7777 33   99999999996

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.85  E-value=9.1e-23  Score=164.52  Aligned_cols=134  Identities=13%  Similarity=0.123  Sum_probs=102.8

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ ++|++  ..+|++++     |++++|+||||||||||+++|+|+++|++|+|.++| .++....  ....++
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g-~~~~~~~--~~~~~~  417 (582)
T 3b5x_A          341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG-HDVRDYK--LTNLRR  417 (582)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC-EEhhhCC--HHHHhc
Confidence            4899999 99974  67888887     789999999999999999999999999999999988 4432211  112356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++++|++         .+++ .|+++|+.++..       .....+++.++++.+++..              +....
T Consensus       418 ~i~~v~Q~~---------~l~~-~tv~eni~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~  480 (582)
T 3b5x_A          418 HFALVSQNV---------HLFN-DTIANNIAYAAE-------GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS  480 (582)
T ss_pred             CeEEEcCCC---------cccc-ccHHHHHhccCC-------CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCc
Confidence            799999986         3555 499999988631       1123567788888887753              12357


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   +|||+++.+|+
T Consensus       481 LSgGq~qr~~iAral~~~p~  500 (582)
T 3b5x_A          481 LSGGQRQRVAIARALLRDAP  500 (582)
T ss_pred             CCHHHHHHHHHHHHHHcCCC
Confidence            777 43   99999999996

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.85  E-value=3.4e-24  Score=157.33  Aligned_cols=129  Identities=16%  Similarity=0.181  Sum_probs=100.3

Q ss_pred             EEEeCe-eeecC----CeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          6 MVLDGF-KSYGT----RVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         6 l~l~~~-~~~~~----~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      |+++|+ +.|++    +.+|++++    +++++|+|||||||||||++|+|++ |++|+|.++| .++..  .  . .++
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g-~~~~~--~--~-~~~   74 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFING-MEVRK--I--R-NYI   74 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETT-EEGGG--C--S-CCT
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECC-EECcc--h--H-Hhh
Confidence            789999 99976    67788776    7899999999999999999999999 9999999987 33221  1  1 245


Q ss_pred             EEE-EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch---
Q psy17514         77 SVT-LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG---  147 (159)
Q Consensus        77 ~i~-~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~---  147 (159)
                      .++ +++|++.         +  .+|+.+|+.+...  .  .  ....+++.++++.++|. .   ..+..||+ |+   
T Consensus        75 ~i~~~v~Q~~~---------l--~~tv~enl~~~~~--~--~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv  137 (263)
T 2pjz_A           75 RYSTNLPEAYE---------I--GVTVNDIVYLYEE--L--K--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV  137 (263)
T ss_dssp             TEEECCGGGSC---------T--TSBHHHHHHHHHH--H--T--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHH
T ss_pred             heEEEeCCCCc---------c--CCcHHHHHHHhhh--h--c--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence            699 9999852         3  5689999876422  1  0  22356789999999997 4   56778888 33   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      +||++|+.+|+
T Consensus       138 ~lAraL~~~p~  148 (263)
T 2pjz_A          138 RTSLALASQPE  148 (263)
T ss_dssp             HHHHHHHTCCS
T ss_pred             HHHHHHHhCCC
Confidence            99999999996

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.85  E-value=1.1e-23  Score=154.51  Aligned_cols=132  Identities=14%  Similarity=0.122  Sum_probs=96.4

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ +.|++   ..+|++++     |++++|+||||||||||+++|+|++++ +|+|+++| .++.. .. ....+
T Consensus        17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g-~~i~~-~~-~~~~~   92 (260)
T 2ghi_A           17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGG-KNVNK-YN-RNSIR   92 (260)
T ss_dssp             CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETT-EEGGG-BC-HHHHH
T ss_pred             eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECC-EEhhh-cC-HHHHh
Confidence            4899999 99975   35788887     789999999999999999999999987 79999987 33211 00 01124


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~  141 (159)
                      +.|++++|++         .+++ .||.+|+.++..      .  ...+++.++++.+++..              ..+.
T Consensus        93 ~~i~~v~Q~~---------~l~~-~tv~enl~~~~~------~--~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~  154 (260)
T 2ghi_A           93 SIIGIVPQDT---------ILFN-ETIKYNILYGKL------D--ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGM  154 (260)
T ss_dssp             TTEEEECSSC---------CCCS-EEHHHHHHTTCT------T--CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSB
T ss_pred             ccEEEEcCCC---------cccc-cCHHHHHhccCC------C--CCHHHHHHHHHHhCCHHHHHhccccccccccCCcC
Confidence            5699999986         3555 599999987532      1  12355667777666532              2456


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      .+|+ |+   +|||+|+.+|+
T Consensus       155 ~LSgGqkqRv~lAraL~~~p~  175 (260)
T 2ghi_A          155 KLSGGERQRIAIARCLLKDPK  175 (260)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCS
T ss_pred             cCCHHHHHHHHHHHHHHcCCC
Confidence            7877 33   99999999996

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.81  E-value=1.3e-22  Score=163.68  Aligned_cols=134  Identities=15%  Similarity=0.154  Sum_probs=101.6

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ ++|++  ..+|++++     |++++|+||||||||||+++|+|+++|++|+|+++| .++.. .. ....++
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g-~~~~~-~~-~~~~~~  417 (582)
T 3b60_A          341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG-HDLRE-YT-LASLRN  417 (582)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT-EETTT-BC-HHHHHH
T ss_pred             cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC-EEccc-cC-HHHHHh
Confidence            4899999 99973  67888887     799999999999999999999999999999999988 33211 00 011345


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++++|++         .+++. |+++|+.++..       .....+++.++++.+++..              +....
T Consensus       418 ~i~~v~Q~~---------~l~~~-tv~eni~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~  480 (582)
T 3b60_A          418 QVALVSQNV---------HLFND-TVANNIAYART-------EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL  480 (582)
T ss_dssp             TEEEECSSC---------CCCSS-BHHHHHHTTTT-------SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCS
T ss_pred             hCeEEccCC---------cCCCC-CHHHHHhccCC-------CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCC
Confidence            799999986         35654 99999988641       0123567788888877743              23467


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   +|||+++.+|+
T Consensus       481 LSgGq~qrl~iAral~~~p~  500 (582)
T 3b60_A          481 LSGGQRQRIAIARALLRDSP  500 (582)
T ss_dssp             SCHHHHHHHHHHHHHHHCCS
T ss_pred             CCHHHHHHHHHHHHHHhCCC
Confidence            877 43   99999999996

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.81  E-value=4.1e-22  Score=160.82  Aligned_cols=133  Identities=12%  Similarity=0.134  Sum_probs=98.3

Q ss_pred             EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ ++|+  +..+|+++|     |++++|+||||||||||+++|+|+++|++|+|.++| .++... . ....++
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g-~~i~~~-~-~~~~r~  417 (587)
T 3qf4_A          341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE-LDVRTV-K-LKDLRG  417 (587)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS-SBGGGB-C-HHHHHH
T ss_pred             cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC-EEcccC-C-HHHHHh
Confidence            4899999 9995  456888887     799999999999999999999999999999999988 343211 1 111356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc-----------cc---CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL-----------NV---NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~---~~~~~  142 (159)
                      .|++++|++         .+++ .|+++|+.++..        ....+++.+.++..++           +.   +.+..
T Consensus       418 ~i~~v~Q~~---------~lf~-~tv~eni~~~~~--------~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~  479 (587)
T 3qf4_A          418 HISAVPQET---------VLFS-GTIKENLKWGRE--------DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN  479 (587)
T ss_dssp             HEEEECSSC---------CCCS-EEHHHHHTTTCS--------SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCS
T ss_pred             heEEECCCC---------cCcC-ccHHHHHhccCC--------CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCC
Confidence            799999986         3565 499999988632        1233445555544433           22   45677


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   +|||+++.+|+
T Consensus       480 LSgGqrQrv~lARal~~~p~  499 (587)
T 3qf4_A          480 FSGGQKQRLSIARALVKKPK  499 (587)
T ss_dssp             SCHHHHHHHHHHHHHHTCCS
T ss_pred             cCHHHHHHHHHHHHHHcCCC
Confidence            888 44   99999999996

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.80  E-value=1.9e-22  Score=162.51  Aligned_cols=133  Identities=15%  Similarity=0.169  Sum_probs=99.4

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ ++|++  ..+|+++|     |++++|+||||||||||+++|.|+++|++|+|.++| .++... . ....++
T Consensus       339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g-~~~~~~-~-~~~~r~  415 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG-HNIKDF-L-TGSLRN  415 (578)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT-EEGGGS-C-HHHHHH
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC-EEhhhC-C-HHHHhh
Confidence            4899999 99964  46888887     799999999999999999999999999999999988 333111 1 112356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++++|++         .+++. ||++|+.++..        ....+++.+.++.+++..              +....
T Consensus       416 ~i~~v~Q~~---------~l~~~-tv~eni~~~~~--------~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~  477 (578)
T 4a82_A          416 QIGLVQQDN---------ILFSD-TVKENILLGRP--------TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK  477 (578)
T ss_dssp             TEEEECSSC---------CCCSS-BHHHHHGGGCS--------SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred             heEEEeCCC---------ccCcc-cHHHHHhcCCC--------CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence            799999986         35655 99999988632        123456677777666532              12346


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      +|+ |+   +|||+++.+|+
T Consensus       478 LSgGq~Qrv~lAral~~~p~  497 (578)
T 4a82_A          478 LSGGQKQRLSIARIFLNNPP  497 (578)
T ss_dssp             SCHHHHHHHHHHHHHHHCCS
T ss_pred             CCHHHHHHHHHHHHHHcCCC
Confidence            777 43   99999999996

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.79  E-value=2.1e-22  Score=162.81  Aligned_cols=133  Identities=12%  Similarity=0.198  Sum_probs=98.8

Q ss_pred             EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      .|+++|+ ++|++ ..+|++++     |++++|+||||||||||+++|+|+++|++|+|.++| .++...+  ....++.
T Consensus       354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g-~~i~~~~--~~~~r~~  430 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG-IDIRKIK--RSSLRSS  430 (598)
T ss_dssp             CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETT-EEGGGSC--HHHHHHH
T ss_pred             eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECC-EEhhhCC--HHHHHhc
Confidence            4899999 99964 56788877     799999999999999999999999999999999988 3332111  1123567


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCC-----------eeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNP-----------HFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~-----------~~l  143 (159)
                      |++++|++         .+++ .||++|+.++..        ....+++.+.++.+++..   ..|           ..+
T Consensus       431 i~~v~Q~~---------~lf~-~tv~eni~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L  492 (598)
T 3qf4_B          431 IGIVLQDT---------ILFS-TTVKENLKYGNP--------GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL  492 (598)
T ss_dssp             EEEECTTC---------CCCS-SBHHHHHHSSST--------TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS
T ss_pred             eEEEeCCC---------cccc-ccHHHHHhcCCC--------CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC
Confidence            99999986         3554 499999988632        112356667777766643   222           467


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +|||+++.+|+
T Consensus       493 SgGq~Qrv~iAral~~~p~  511 (598)
T 3qf4_B          493 SQGQRQLLAITRAFLANPK  511 (598)
T ss_dssp             CHHHHHHHHHHHHHHTCCS
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            77 43   99999999996

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.77  E-value=1.5e-20  Score=139.70  Aligned_cols=116  Identities=17%  Similarity=0.196  Sum_probs=77.8

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.  ...+|++++     |++++|+|||||||||||++|+|+++|++|+|.++|                .|
T Consensus        40 ~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----------------~i  101 (290)
T 2bbs_A           40 SLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------------RI  101 (290)
T ss_dssp             ------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----------------CE
T ss_pred             eEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----------------EE
Confidence            4788888 54  356778777     789999999999999999999999999999998865                38


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeEE
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFLI  144 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l~  144 (159)
                      +|++|++         .+++. ||.+|+. +..  +       ....+.++++.+++..              ..+..+|
T Consensus       102 ~~v~Q~~---------~l~~~-tv~enl~-~~~--~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LS  161 (290)
T 2bbs_A          102 SFCSQNS---------WIMPG-TIKENII-GVS--Y-------DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS  161 (290)
T ss_dssp             EEECSSC---------CCCSS-BHHHHHH-TTC--C-------CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCC
T ss_pred             EEEeCCC---------ccCcc-cHHHHhh-Ccc--c-------chHHHHHHHHHhChHHHHHhccccccchhcCccCcCC
Confidence            9999985         35554 8999987 421  1       1123344444444421              1235777


Q ss_pred             e-Ch---hHhHhhcCCCC
Q psy17514        145 M-QG---RVTKVLNMKPH  158 (159)
Q Consensus       145 ~-q~---~ia~~l~~~p~  158 (159)
                      + |+   +|||+|+.+|+
T Consensus       162 gGq~QRv~lAraL~~~p~  179 (290)
T 2bbs_A          162 GGQRARISLARAVYKDAD  179 (290)
T ss_dssp             HHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHCCCC
Confidence            7 33   99999999996

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.76  E-value=9.2e-21  Score=164.17  Aligned_cols=135  Identities=16%  Similarity=0.164  Sum_probs=103.4

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ .+|++   .++|+++|     |+.++|+||||||||||+++|.+++.|++|+|.++| .++...+  ....|
T Consensus      1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG-~di~~i~--~~~lR 1152 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDG-SEIKTLN--PEHTR 1152 (1321)
T ss_dssp             CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETT-EETTTBC--HHHHH
T ss_pred             eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECC-EEhhhCC--HHHHH
Confidence            4899999 99964   35889888     799999999999999999999999999999999998 3432111  11246


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~  141 (159)
                      .+|++|+|+|         .+|+. |+++||.++..      ....+.+++.++++..++.+              +.-.
T Consensus      1153 ~~i~~V~Qdp---------~LF~g-TIreNI~~gld------~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~ 1216 (1321)
T 4f4c_A         1153 SQIAIVSQEP---------TLFDC-SIAENIIYGLD------PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGT 1216 (1321)
T ss_dssp             TTEEEECSSC---------CCCSE-EHHHHHSSSSC------TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSC
T ss_pred             hheEEECCCC---------EeeCc-cHHHHHhccCC------CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCc
Confidence            7899999997         35654 99999988742      12245678888888887743              1234


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      .||+ |+   +||||+..+|+
T Consensus      1217 ~LSgGQrQriaiARAllr~~~ 1237 (1321)
T 4f4c_A         1217 QLSGGQKQRIAIARALVRNPK 1237 (1321)
T ss_dssp             SSCHHHHHHHHHHHHHHSCCS
T ss_pred             ccCHHHHHHHHHHHHHHhCCC
Confidence            5666 44   99999999986

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.74  E-value=1.8e-17  Score=129.34  Aligned_cols=147  Identities=32%  Similarity=0.551  Sum_probs=96.5

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCC-CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC--------
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFD-REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA--------   71 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~-~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~--------   71 (159)
                      |.+..|+++||++|++...+ ++. +++++|+|||||||||||++|++++.+++..+|.....++++.+...        
T Consensus         2 m~i~~l~~~~~~~~~~~~~~-~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~~~R~~~~~~lI~~g~~~~~~~~~~~   80 (430)
T 1w1w_A            2 GRLVGLELSNFKSYRGVTKV-GFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYRGVLNDENSDDYD   80 (430)
T ss_dssp             CCEEEEEEESCSSCCSEEEE-ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---------CGGGSCCC-----------
T ss_pred             CeeEEEEEeCEEEECCceeE-EecCCCEEEEECCCCCCHHHHHHHHHhhhccccccchhhhHHHHHhcCCccceeeEEec
Confidence            56889999999999775444 365 78999999999999999999999998876545544334444322100        


Q ss_pred             -------ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEE
Q psy17514         72 -------GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLI  144 (159)
Q Consensus        72 -------~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~  144 (159)
                             ......|...|+..+           ...++.+.+...+...+++|+.+...+++...++..++.......++
T Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~-----------~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~~i~~~~~~~~i  149 (430)
T 1w1w_A           81 NEGAASSNPQSAYVKAFYQKGN-----------KLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLV  149 (430)
T ss_dssp             --------CCEEEEEEEEEETT-----------EEEEEEEEEETTSCEEEEETTEEECHHHHHHHHHHTTCCTTTCTTEE
T ss_pred             ccccccCCcccccceeeeccCC-----------cEEEEEEEEecCCceEEEECCEEccHHHHHHHHHhCCcCCCCcceee
Confidence                   002344555554321           12456666655555578899998877788888887777655555577


Q ss_pred             eChhHhHhhcCCCCC
Q psy17514        145 MQGRVTKVLNMKPHE  159 (159)
Q Consensus       145 ~q~~ia~~l~~~p~~  159 (159)
                      .|+.+..++.++|.|
T Consensus       150 ~qg~~~~l~~~~p~e  164 (430)
T 1w1w_A          150 FQGDVEQIAAQSPVE  164 (430)
T ss_dssp             CTTCTTHHHHSCHHH
T ss_pred             ehHhHHHHHhCCHHH
Confidence            799888888877753

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.74  E-value=2.7e-17  Score=123.85  Aligned_cols=146  Identities=34%  Similarity=0.600  Sum_probs=97.0

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chhhhhHHHHHHhhCC--CceeEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK-QVRANTLQELIYKNGQ--AGVTKAS   77 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~~~~~~~~~~~~~~--~~~~~~~   77 (159)
                      |++..|+++||++|++...+ +++.++++|+|||||||||||++|+++++...+ +.+.....++++.+..  .......
T Consensus         1 M~l~~L~i~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~   79 (322)
T 1e69_A            1 MRLKKLYLKGFKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAY   79 (322)
T ss_dssp             CEEEEEEEESBTTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEE
T ss_pred             CeEeEEEEeCceeecCCeEE-ecCCCcEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEE
Confidence            89999999999999654444 577779999999999999999999999854322 2222221222221110  1124678


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP  157 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p  157 (159)
                      |..+|+..+           ..+.+.+.+.......+++++.+.....+.+++..+++..+. ..+..||.+...+...|
T Consensus        80 v~~~f~~~~-----------~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~-~~lv~qg~i~~~~~~~p  147 (322)
T 1e69_A           80 VELVFEENG-----------EEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDF-YSIVGQGQIDRIVNASP  147 (322)
T ss_dssp             EEEEEESSS-----------CEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTC-CSEEEHHHHHHHHTC--
T ss_pred             EEEEEEeCC-----------eEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhh-eeeEehhhHHHHHhccH
Confidence            888998742           246777776655555788999888777788888777776533 35677998888887777


Q ss_pred             CC
Q psy17514        158 HE  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       148 ~~  149 (322)
T 1e69_A          148 EE  149 (322)
T ss_dssp             --
T ss_pred             HH
Confidence            53

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.72  E-value=8.9e-20  Score=158.07  Aligned_cols=133  Identities=14%  Similarity=0.175  Sum_probs=102.0

Q ss_pred             EEEEeCe-eeec---CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYG---TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~---~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ .+|+   +.++|+++|     |+.++|+||+|||||||+++|.|+++|.+|+|.++| .++...+  ..+.+
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG-~~i~~~~--~~~lr  491 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG-VDVRDIN--LEFLR  491 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETT-EETTTSC--HHHHH
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCC-ccchhcc--HHHHh
Confidence            4899999 9996   356888887     799999999999999999999999999999999988 3321101  12246


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~  141 (159)
                      ..|++|+|+|         .+|. -|+++||.++..        ....+++.++++..++..              +.-.
T Consensus       492 ~~i~~v~Q~~---------~Lf~-~TI~eNI~~g~~--------~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~  553 (1321)
T 4f4c_A          492 KNVAVVSQEP---------ALFN-CTIEENISLGKE--------GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGT  553 (1321)
T ss_dssp             HHEEEECSSC---------CCCS-EEHHHHHHTTCT--------TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSC
T ss_pred             hcccccCCcc---------eeeC-CchhHHHhhhcc--------cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCC
Confidence            6799999996         2444 599999998732        235678888888876632              2345


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      .||+ |+   +||||+..+|+
T Consensus       554 ~LSGGQkQRiaiARAl~~~~~  574 (1321)
T 4f4c_A          554 QLSGGQKQRIAIARALVRNPK  574 (1321)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCS
T ss_pred             CCCHHHHHHHHHHHHHccCCC
Confidence            6777 44   99999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.72  E-value=3.7e-20  Score=160.08  Aligned_cols=133  Identities=15%  Similarity=0.133  Sum_probs=97.8

Q ss_pred             EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ ++|++   .++|++++     |++++|+||||||||||+++|.|+++|++|+|.++| .++...+  ....+
T Consensus       387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g-~~i~~~~--~~~~r  463 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG-QDIRTIN--VRYLR  463 (1284)
T ss_dssp             CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETT-EEGGGSC--HHHHH
T ss_pred             eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EEHHhCC--HHHHH
Confidence            4899999 99964   35888887     799999999999999999999999999999999988 3332111  11235


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~  141 (159)
                      +.|++|+|++         .+++. ||++|+.++..        ....+++.+.++..++..              +...
T Consensus       464 ~~i~~v~Q~~---------~l~~~-ti~eNi~~g~~--------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~  525 (1284)
T 3g5u_A          464 EIIGVVSQEP---------VLFAT-TIAENIRYGRE--------DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGA  525 (1284)
T ss_dssp             HHEEEECSSC---------CCCSS-CHHHHHHHHCS--------SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSC
T ss_pred             hheEEEcCCC---------ccCCc-cHHHHHhcCCC--------CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCC
Confidence            5799999996         35554 99999988632        123345555555443321              3456


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      .||+ |+   +|||++..+|+
T Consensus       526 ~LSgGq~QriaiARal~~~p~  546 (1284)
T 3g5u_A          526 QLSGGQKQRIAIARALVRNPK  546 (1284)
T ss_dssp             SSCHHHHHHHHHHHHHHHCCS
T ss_pred             ccCHHHHHHHHHHHHHhcCCC
Confidence            7887 44   99999999986

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.71  E-value=8.1e-19  Score=141.83  Aligned_cols=122  Identities=15%  Similarity=0.108  Sum_probs=90.5

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .++++|+ +.|++. .|..++     |++++|+|||||||||||++|+|++.|++|+|.+.                ..|
T Consensus       357 ~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~----------------~~i  419 (607)
T 3bk7_A          357 LVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----------------LTV  419 (607)
T ss_dssp             EEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC----------------CCE
T ss_pred             EEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe----------------eEE
Confidence            5889999 899775 355543     89999999999999999999999999999998751                248


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      +|++|++.         ..+.+||.+++.......+      ...+.+.++++.++|..   ..+..||+ |+   +||+
T Consensus       420 ~~v~Q~~~---------~~~~~tv~e~~~~~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAr  484 (607)
T 3bk7_A          420 AYKPQYIK---------AEYEGTVYELLSKIDSSKL------NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAA  484 (607)
T ss_dssp             EEECSSCC---------CCCSSBHHHHHHHHHHHHH------HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHH
T ss_pred             EEEecCcc---------CCCCCcHHHHHHhhhccCC------CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence            99999852         3344677665533100000      12356788899999865   45678888 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       485 aL~~~p~  491 (607)
T 3bk7_A          485 TLLRDAD  491 (607)
T ss_dssp             HHTSCCS
T ss_pred             HHHhCCC
Confidence            9999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.70  E-value=1.7e-19  Score=156.02  Aligned_cols=135  Identities=17%  Similarity=0.193  Sum_probs=98.0

Q ss_pred             EEEEeCe-eeecCC---eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGTR---VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~~---~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ ++|++.   ++|+++|     |++++|+||||||||||+++|.|+++|++|+|.++| .++... . ....+
T Consensus      1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g-~~i~~~-~-~~~~r 1106 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDG-KEIKQL-N-VQWLR 1106 (1284)
T ss_dssp             CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSS-SCTTSS-C-HHHHT
T ss_pred             cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC-EEcccC-C-HHHHH
Confidence            4889999 999653   5788888     799999999999999999999999999999999988 333110 0 11235


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~  141 (159)
                      +.|++++|++         .+++ .||++|+.++..      ......+++.+.++..++..              +...
T Consensus      1107 ~~i~~v~Q~~---------~l~~-~ti~eNi~~~~~------~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A         1107 AQLGIVSQEP---------ILFD-CSIAENIAYGDN------SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp             TSCEEEESSC---------CCCS-SBHHHHHTCCCS------SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSC
T ss_pred             hceEEECCCC---------cccc-ccHHHHHhccCC------CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCC
Confidence            6799999996         2443 599999987632      11123455566665555432              2345


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      .||+ |+   +|||++..+|+
T Consensus      1171 ~LSgGq~Qrv~iARal~~~p~ 1191 (1284)
T 3g5u_A         1171 QLSGGQKQRIAIARALVRQPH 1191 (1284)
T ss_dssp             SSCHHHHHHHHHHHHHHHCCS
T ss_pred             ccCHHHHHHHHHHHHHHcCCC
Confidence            6777 33   99999999986

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.68  E-value=1.6e-18  Score=138.47  Aligned_cols=122  Identities=14%  Similarity=0.104  Sum_probs=89.7

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ +.|++. .+..++     |++++|+||||||||||+++|+|+++|++|+|.+                ...|
T Consensus       287 ~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~----------------~~~i  349 (538)
T 1yqt_A          287 LVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW----------------DLTV  349 (538)
T ss_dssp             EEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC----------------CCCE
T ss_pred             EEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE----------------CceE
Confidence            5889999 889764 455543     8999999999999999999999999999999875                1248


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~  151 (159)
                      ++++|++.         ..+.+||.+++.......+      ...+.+.++++.+++..   ..+..||+ |+   +||+
T Consensus       350 ~~v~Q~~~---------~~~~~tv~~~~~~~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAr  414 (538)
T 1yqt_A          350 AYKPQYIK---------ADYEGTVYELLSKIDASKL------NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAA  414 (538)
T ss_dssp             EEECSSCC---------CCCSSBHHHHHHHHHHHHH------TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHH
T ss_pred             EEEecCCc---------CCCCCcHHHHHHhhhccCC------CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHH
Confidence            99999852         2344577555432100000      12356788899999865   45778888 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       415 aL~~~p~  421 (538)
T 1yqt_A          415 TLLRDAD  421 (538)
T ss_dssp             HHTSCCS
T ss_pred             HHHhCCC
Confidence            9999986

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.67  E-value=3.6e-18  Score=136.42  Aligned_cols=124  Identities=15%  Similarity=0.077  Sum_probs=90.2

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .++++++ +.|++.. +...+     +++++|+||||||||||+++|+|+++|++|+|.+.+               ..+
T Consensus       269 ~l~~~~l~~~~~~~~-l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~---------------~~i  332 (538)
T 3ozx_A          269 KMKWTKIIKKLGDFQ-LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK---------------QIL  332 (538)
T ss_dssp             EEEECCEEEEETTEE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC---------------CCE
T ss_pred             eEEEcceEEEECCEE-EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------------eee
Confidence            5789999 8998754 44332     899999999999999999999999999999997543               247


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia~  151 (159)
                      ++++|+..         .....||.+++...... +    .......+.++++.++|..   ..+..||+   |+ +|||
T Consensus       333 ~~~~q~~~---------~~~~~tv~~~l~~~~~~-~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAr  398 (538)
T 3ozx_A          333 SYKPQRIF---------PNYDGTVQQYLENASKD-A----LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAA  398 (538)
T ss_dssp             EEECSSCC---------CCCSSBHHHHHHHHCSS-T----TCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHH
T ss_pred             Eeechhcc---------cccCCCHHHHHHHhhhh-c----cchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHH
Confidence            88888642         12245777776542110 0    0112345778889999875   56788888   33 9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +|+.+|+
T Consensus       399 aL~~~p~  405 (538)
T 3ozx_A          399 TLAKEAD  405 (538)
T ss_dssp             HHHSCCS
T ss_pred             HHHcCCC
Confidence            9999996

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.67  E-value=9.5e-19  Score=141.41  Aligned_cols=132  Identities=14%  Similarity=0.091  Sum_probs=85.1

Q ss_pred             eCe-eeecCC-eeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch---------hhhhHHHHHHhhCCCce
Q psy17514          9 DGF-KSYGTR-VEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQV---------RANTLQELIYKNGQAGV   73 (159)
Q Consensus         9 ~~~-~~~~~~-~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i---------~~~~~~~~~~~~~~~~~   73 (159)
                      +|+ ++|++. .++.+++    |++++|+|||||||||||++|+|++.|++|++         ++.| .++.........
T Consensus        95 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G-~~~~~~~~~~~~  173 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG-NELQNYFERLKN  173 (607)
T ss_dssp             GSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT-STHHHHHHHHHH
T ss_pred             CCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC-Eehhhhhhhhhh
Confidence            899 999876 3788775    68999999999999999999999999999985         2333 111110000000


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G  147 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~  147 (159)
                      .+..+++++|.....     ...+.. |+.+++...           ...+++.++++.++|..   ..+..||+ |  +
T Consensus       174 ~~~~i~~~~q~~~~~-----~~~~~~-tv~e~l~~~-----------~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQR  236 (607)
T 3bk7_A          174 GEIRPVVKPQYVDLL-----PKAVKG-KVRELLKKV-----------DEVGKFEEVVKELELENVLDRELHQLSGGELQR  236 (607)
T ss_dssp             TSCCCEEECSCGGGG-----GGTCCS-BHHHHHHHT-----------CCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHH
T ss_pred             hhcceEEeechhhhc-----hhhccc-cHHHHhhhh-----------HHHHHHHHHHHHcCCCchhCCChhhCCHHHHHH
Confidence            123466777653110     011111 444444221           11245788999999975   45778888 3  3


Q ss_pred             -hHhHhhcCCCC
Q psy17514        148 -RVTKVLNMKPH  158 (159)
Q Consensus       148 -~ia~~l~~~p~  158 (159)
                       +||++|+.+|+
T Consensus       237 vaIAraL~~~P~  248 (607)
T 3bk7_A          237 VAIAAALLRKAH  248 (607)
T ss_dssp             HHHHHHHHSCCS
T ss_pred             HHHHHHHhcCCC
Confidence             99999999996

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.66  E-value=2.9e-18  Score=137.09  Aligned_cols=134  Identities=14%  Similarity=0.094  Sum_probs=83.1

Q ss_pred             EE-eCe-eeecCC-eeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch---------hhhhHHHHHHhhCC
Q psy17514          7 VL-DGF-KSYGTR-VEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQV---------RANTLQELIYKNGQ   70 (159)
Q Consensus         7 ~l-~~~-~~~~~~-~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i---------~~~~~~~~~~~~~~   70 (159)
                      ++ +|+ ++|++. .++.+++    |++++|+|||||||||||++|+|++.|++|++         .+.| .++......
T Consensus        22 ~~~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g-~~~~~~~~~  100 (538)
T 1yqt_A           22 QLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRG-NELQNYFEK  100 (538)
T ss_dssp             --CCCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTT-STHHHHHHH
T ss_pred             hHhcCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCC-ccHHHHHHH
Confidence            44 588 999876 3788774    78999999999999999999999999999985         2333 111100000


Q ss_pred             CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C
Q psy17514         71 AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q  146 (159)
Q Consensus        71 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q  146 (159)
                      ....+..+++++|.....  +   ..+. .++.+++..           ....+++.++++.++|..   ..+..||+ |
T Consensus       101 ~~~~~~~~~~~~q~~~~~--~---~~~~-~~v~e~~~~-----------~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGe  163 (538)
T 1yqt_A          101 LKNGEIRPVVKPQYVDLI--P---KAVK-GKVIELLKK-----------ADETGKLEEVVKALELENVLEREIQHLSGGE  163 (538)
T ss_dssp             HHTTSCCCEEECSCGGGS--G---GGCC-SBHHHHHHH-----------HCSSSCHHHHHHHTTCTTTTTSBGGGCCHHH
T ss_pred             HHHHhhhhhhhhhhhhhc--c---hhhh-ccHHHHHhh-----------hhHHHHHHHHHHHcCCChhhhCChhhCCHHH
Confidence            000123467777753100  0   0111 133332211           111245788999999975   45678887 3


Q ss_pred             h---hHhHhhcCCCC
Q psy17514        147 G---RVTKVLNMKPH  158 (159)
Q Consensus       147 ~---~ia~~l~~~p~  158 (159)
                      +   +||++|+.+|+
T Consensus       164 kQRv~iAraL~~~P~  178 (538)
T 1yqt_A          164 LQRVAIAAALLRNAT  178 (538)
T ss_dssp             HHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHhcCCC
Confidence            3   99999999996

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=99.63  E-value=8.5e-16  Score=103.67  Aligned_cols=134  Identities=23%  Similarity=0.337  Sum_probs=82.6

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |++..|+++||++|.+..  .+++.++++|+|||||||||+|++|+.++... ..  +.....++++.+    .....|.
T Consensus         1 M~i~~l~i~nf~~~~~~~--i~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~~--r~~~~~~~~~~~----~~~~~v~   72 (149)
T 1f2t_A            1 MKLERVTVKNFRSHSDTV--VEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRI--KDIKKDEFTKVG----ARDTYID   72 (149)
T ss_dssp             CEEEEEEEESBTTBSSEE--EECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSCC--TTSSCCCSCSTT----CCCEEEE
T ss_pred             CEEEEEEEeCcccCcceE--EEcCCCeEEEECCCCCCHHHHHHHHHHHHcCCccc--ccCCHHHheecC----CCcEEEE
Confidence            889999999999997754  35778899999999999999999999877322 11  111111222211    1346777


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCC-ceEEE--EC--C---EEe--CH-HHHHHHHHhcCcccCC--CeeEEeC
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPS-NTRYM--IN--G---SSV--NP-KRVSDLFSSVNLNVNN--PHFLIMQ  146 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~-~~~~~--~~--~---~~~--~~-~~~~~~l~~~~l~~~~--~~~l~~q  146 (159)
                      +.|...+           ..+++.+.+.... ...+.  .+  +   ...  .. +++.+.++.+ ++.+.  ...++.|
T Consensus        73 ~~f~~~~-----------~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~i~Q  140 (149)
T 1f2t_A           73 LIFEKDG-----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQ  140 (149)
T ss_dssp             EEEEETT-----------EEEEEEEEECCC----EEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHHTEECT
T ss_pred             EEEEECC-----------EEEEEEEEEcCCCCceEEEEEeccCCCceEEcccCchHHHHHHHHHH-cCHHHhhheEEEcC
Confidence            7776532           2356777665411 22333  34  4   221  24 6777777765 54321  1235679


Q ss_pred             hhHhHhhc
Q psy17514        147 GRVTKVLN  154 (159)
Q Consensus       147 ~~ia~~l~  154 (159)
                      |.+++++.
T Consensus       141 G~~~~~l~  148 (149)
T 1f2t_A          141 GQIDAILE  148 (149)
T ss_dssp             THHHHHTC
T ss_pred             cCHHHHhh
Confidence            99888774

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.63  E-value=4.1e-17  Score=136.93  Aligned_cols=56  Identities=21%  Similarity=0.271  Sum_probs=50.0

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      .|+++|+ +.|++  +.+|.++|     |++++|+||||||||||+++|+|++.|++|+|++.+
T Consensus       671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~  734 (986)
T 2iw3_A          671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE  734 (986)
T ss_dssp             EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred             eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence            4899999 99965  56788887     799999999999999999999999999999998753

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=99.60  E-value=9.5e-15  Score=103.27  Aligned_cols=137  Identities=21%  Similarity=0.358  Sum_probs=87.5

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |++..|+++||++|.+.. + +++..+++|+|||||||||++++|..++.... ..+.....++++.+.    ....|.+
T Consensus         1 M~i~~l~i~nf~~~~~~~-i-~f~~~~~~I~G~NgsGKStil~ai~~~l~g~~-~~r~~~~~~~i~~~~----~~~~v~l   73 (203)
T 3qks_A            1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPL-RIKDIKKDEFTKVGA----RDTYIDL   73 (203)
T ss_dssp             CEEEEEEEESBTTBSSEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHTTS-CCTTCCHHHHHTSCS----SCEEEEE
T ss_pred             CEEEEEEEECCcCccceE-E-EeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCc-ccccccchhhhccCC----CcEEEEE
Confidence            889999999999998754 3 57788999999999999999999998886431 112222245554322    3567888


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCC---ce---EEEECCEEe-----CHHHHHHHHHhc-CcccCCCeeEEeChh
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPS---NT---RYMINGSSV-----NPKRVSDLFSSV-NLNVNNPHFLIMQGR  148 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~---~~---~~~~~~~~~-----~~~~~~~~l~~~-~l~~~~~~~l~~q~~  148 (159)
                      .|...+           ..+++.+.+..+.   ..   .+..++...     ..+.+.+.+..+ +........++.||.
T Consensus        74 ~f~~~~-----------~~~~i~R~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~i~~ll~~~~f~~~~~l~Qg~  142 (203)
T 3qks_A           74 IFEKDG-----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQ  142 (203)
T ss_dssp             EEEETT-----------EEEEEEEEEECSSSCEEEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHTTEECTTH
T ss_pred             EEEECC-----------EEEEEEEEEEcCCCCCccceEEEEcCCceeeeccCChHHHHHHHHHHcCHHHhhEEEEEcCCc
Confidence            887642           2356777766543   11   244455211     234666666554 332212234677998


Q ss_pred             HhHhhcC
Q psy17514        149 VTKVLNM  155 (159)
Q Consensus       149 ia~~l~~  155 (159)
                      +..++..
T Consensus       143 ~~~~l~~  149 (203)
T 3qks_A          143 IDAILES  149 (203)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            8877754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.51  E-value=7.5e-16  Score=124.48  Aligned_cols=102  Identities=17%  Similarity=0.184  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEE
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQ  105 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~  105 (159)
                      ++++|+||||||||||+++|+|+++|++|+..                ....+++++|+..         .....||.++
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~----------------~~~~i~~~~q~~~---------~~~~~tv~e~  433 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDI----------------PKLNVSMKPQKIA---------PKFPGTVRQL  433 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC----------------CSCCEEEECSSCC---------CCCCSBHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc----------------cCCcEEEeccccc---------ccCCccHHHH
Confidence            78999999999999999999999999988621                1235889988742         1112355554


Q ss_pred             EEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h-hHhHhhcCCCC
Q psy17514        106 ISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G-RVTKVLNMKPH  158 (159)
Q Consensus       106 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~-~ia~~l~~~p~  158 (159)
                      +.....      +.......+.++++.++|..   ..+..||+ |  + +|||+|+.+|+
T Consensus       434 ~~~~~~------~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~  487 (608)
T 3j16_B          434 FFKKIR------GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPAD  487 (608)
T ss_dssp             HHHHCS------STTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCS
T ss_pred             HHHHhh------cccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence            432110      11112356678888888865   56788888 3  3 99999999996

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.49  E-value=3.2e-15  Score=125.55  Aligned_cols=120  Identities=15%  Similarity=0.194  Sum_probs=84.0

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|...|+ +.|+++.+|++++     |++++|+|||||||||||++|++      |.+  .+. +    .. .   ..++
T Consensus       435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~-~----~~-~---~~~~  497 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGF-P----TQ-E---ECRT  497 (986)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTC-C----CT-T---TSCE
T ss_pred             eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCC-c----cc-c---ceeE
Confidence            4666689 9999888899887     78999999999999999999995      443  120 0    00 0   1124


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~---~ia  150 (159)
                      ++++|+..        .+++.+|+.+++.+..      .+.   .+++.++++.++|. .   ..+..||+ |+   +||
T Consensus       498 ~~v~q~~~--------~~~~~ltv~e~l~~~~------~~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLA  560 (986)
T 2iw3_A          498 VYVEHDID--------GTHSDTSVLDFVFESG------VGT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALA  560 (986)
T ss_dssp             EETTCCCC--------CCCTTSBHHHHHHTTC------SSC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHH
T ss_pred             EEEccccc--------ccccCCcHHHHHHHhh------cCH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHH
Confidence            56655421        2455668888775411      011   57789999999994 2   45678888 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      ++|+.+|+
T Consensus       561 rAL~~~P~  568 (986)
T 2iw3_A          561 RAVLRNAD  568 (986)
T ss_dssp             HHHHTTCS
T ss_pred             HHHhcCCC
Confidence            99999996

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.49  E-value=7.1e-16  Score=124.64  Aligned_cols=47  Identities=17%  Similarity=0.253  Sum_probs=38.3

Q ss_pred             Ce-eeecCCe-eeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514         10 GF-KSYGTRV-EINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQV   56 (159)
Q Consensus        10 ~~-~~~~~~~-~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i   56 (159)
                      ++ ++|+... .+..++    |++++|+|||||||||||++|+|++.|+.|++
T Consensus        82 ~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B           82 HVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             TEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            45 6665432 344433    89999999999999999999999999999988

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.48  E-value=4.2e-14  Score=108.38  Aligned_cols=137  Identities=26%  Similarity=0.360  Sum_probs=82.9

Q ss_pred             eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514          2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT   81 (159)
Q Consensus         2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v   81 (159)
                      .+..|+++||++|.+..  .+++.++++|+|||||||||+|+||+.++...   .+.....++++.+.    ....|..+
T Consensus         4 ~l~~L~l~nFr~~~~~~--i~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~---~r~~~~~~~ir~g~----~~~~V~~~   74 (371)
T 3auy_A            4 ILKEIRMNNFKSHVNSR--IKFEKGIVAIIGENGSGKSSIFEAVFFALFGA---GSNFNYDTIITKGK----KSVYVELD   74 (371)
T ss_dssp             EEEEEEEEEETTEEEEE--EECCSEEEEEEECTTSSHHHHHHHHHHHHHCC---C-CCCTTTTBCTTC----SEEEEEEE
T ss_pred             EEeEEEEEccccccceE--EecCCCeEEEECCCCCCHHHHHHHHHHHHcCC---CCccchHhhccCCC----CcEEEEEE
Confidence            35689999999996543  35888999999999999999999999854322   11111123333222    35678888


Q ss_pred             EEcCCCCCCCCCccCCCeEEEEEEEEcCC-ceEEEECCEEeC--HHHHHHHH-HhcCcccC--CCeeEEeChhHhHhhcC
Q psy17514         82 FDNSDKKNCPIGYENDNTIVICRQISIPS-NTRYMINGSSVN--PKRVSDLF-SSVNLNVN--NPHFLIMQGRVTKVLNM  155 (159)
Q Consensus        82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~-~~~~~~~~~~~~--~~~~~~~l-~~~~l~~~--~~~~l~~q~~ia~~l~~  155 (159)
                      |...+           ..+.+.+...-+. ...+++|+....  .+++.+.+ +.+|++.+  .+..+.+|+++...+..
T Consensus        75 f~~~~-----------~~~~i~r~~~~g~~~~~~~~ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~  143 (371)
T 3auy_A           75 FEVNG-----------NNYKIIREYDSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSL  143 (371)
T ss_dssp             EEETT-----------EEEEEEEEEETTEEEEEEEETTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHS
T ss_pred             EEECC-----------EEEEEEEEEcCCCCceEEEECCEeecccHHHHHHHHHHHhCcCHHHhCceeeecCccHHHHHhc
Confidence            87532           1245544422211 113567876543  23555544 44677652  23445568877777766


Q ss_pred             CCC
Q psy17514        156 KPH  158 (159)
Q Consensus       156 ~p~  158 (159)
                      +|+
T Consensus       144 ~~~  146 (371)
T 3auy_A          144 KPS  146 (371)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            664

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.47  E-value=1.2e-15  Score=121.87  Aligned_cols=32  Identities=19%  Similarity=0.221  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQV   56 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i   56 (159)
                      |++++|+|||||||||||++|+|++.|+.|++
T Consensus        25 Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A           25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            79999999999999999999999999999988

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.46  E-value=1.7e-15  Score=123.94  Aligned_cols=134  Identities=10%  Similarity=0.155  Sum_probs=53.6

Q ss_pred             CeeeecCC-----CCeEEEEcCCCCcHHHHH---------------------HHHHHHhCCcccch-------hhhhHHH
Q psy17514         17 RVEINDFD-----REFNAITGLNGTGKSNIL---------------------DGICFVLGIQVKQV-------RANTLQE   63 (159)
Q Consensus        17 ~~~l~~~~-----~~~~~liG~NGaGKSTLl---------------------~~i~~~~~~~~g~i-------~~~~~~~   63 (159)
                      ..+|+++|     +++++|+||||||||||+                     +.+.++..|+.|.+       .+.+ .+
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~-~~  109 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ-KT  109 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS-CC
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC-ch
Confidence            34567776     799999999999999998                     78888888774433       2222 11


Q ss_pred             HHHhhC-------CC----ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeC------HHHH
Q psy17514         64 LIYKNG-------QA----GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVN------PKRV  126 (159)
Q Consensus        64 ~~~~~~-------~~----~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~------~~~~  126 (159)
                      ......       +.    ......+++++|...       ...++.+||.+|+.+..............      ..+.
T Consensus       110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~-------~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (670)
T 3ux8_A          110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKH-------IGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR  182 (670)
T ss_dssp             -----CCBHHHHTTCC--------------------------------CC--------------------------CHHH
T ss_pred             hhccchhceeeeechhhhHHHHHhhhcccccccc-------cccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Confidence            000000       00    001122333333221       12345678899987642110000000000      0122


Q ss_pred             HHHHHhcCccc----CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        127 SDLFSSVNLNV----NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       127 ~~~l~~~~l~~----~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      .++++.++|..    ..+..||+ |+   +|||+|+.+|+
T Consensus       183 ~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~  222 (670)
T 3ux8_A          183 LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLT  222 (670)
T ss_dssp             HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCC
Confidence            34588888863    45678888 33   99999999986

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.45  E-value=2.6e-14  Score=105.15  Aligned_cols=68  Identities=9%  Similarity=0.120  Sum_probs=41.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEE
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQIS  107 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~  107 (159)
                      ++|+||||||||||+++|+|+..|+.|++.+.| .++    . ....++.+++++|++         .+++.+||.+++.
T Consensus         5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g-~~i----~-~~~~~~~i~~v~q~~---------~~~~~ltv~d~~~   69 (270)
T 3sop_A            5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNRE-EKI----P-KTVEIKAIGHVIEEG---------GVKMKLTVIDTPG   69 (270)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHC-------------C----C-CCCSCCEEEESCC-------------CCEEEEECCCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCCccccCC-ccc----C-cceeeeeeEEEeecC---------CCcCCceEEechh
Confidence            689999999999999999999999999999887 332    1 112356799999975         4778899999998


Q ss_pred             cCC
Q psy17514        108 IPS  110 (159)
Q Consensus       108 ~~~  110 (159)
                      ++.
T Consensus        70 ~g~   72 (270)
T 3sop_A           70 FGD   72 (270)
T ss_dssp             --C
T ss_pred             hhh
Confidence            864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.43  E-value=7.1e-15  Score=105.50  Aligned_cols=80  Identities=19%  Similarity=0.212  Sum_probs=52.9

Q ss_pred             CeEEEEEEeCe-eeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC------CCce
Q psy17514          1 MYIKSMVLDGF-KSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG------QAGV   73 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~------~~~~   73 (159)
                      |++..|+++|| ..++. .  .++..++++|+|||||||||||++|+|++.|++|.|.+++ .++.....      ....
T Consensus         5 ~k~~~l~l~~~~~~~~~-~--~~~~~~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~~   80 (227)
T 1qhl_A            5 GKFRSLTLINWNGFFAR-T--FDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN-TTEAGATSGSRDKGLHGK   80 (227)
T ss_dssp             CEEEEEEEEEETTEEEE-E--ECHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------------------CGGG
T ss_pred             ceeeEEEEEeeecccCC-E--EEEcCcEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC-EEcccCCccccccchhhH
Confidence            67889999999 54443 2  2344578999999999999999999999999999999887 34311110      1111


Q ss_pred             eEEEEEEEEEc
Q psy17514         74 TKASVTLTFDN   84 (159)
Q Consensus        74 ~~~~i~~v~q~   84 (159)
                      .+..+++++|.
T Consensus        81 ~~~~i~~v~~~   91 (227)
T 1qhl_A           81 LKAGVCYSMLD   91 (227)
T ss_dssp             BCSSEEEEEEE
T ss_pred             hhcCcEEEEEe
Confidence            24568999974

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.41  E-value=9.4e-15  Score=99.43  Aligned_cols=84  Identities=12%  Similarity=0.061  Sum_probs=58.6

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      ++..++ +.|++..++.+++     +++++|+||||||||||+++|+|++ |++|+|.+.+ .++..     ....+  .
T Consensus         8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g-~~i~~-----~~~~~--~   78 (158)
T 1htw_A            8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT-YTLVE-----EYNIA--G   78 (158)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT-TTCEE-----EEEET--T
T ss_pred             cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC-Eeeee-----eccCC--C
Confidence            334456 7787766677643     7899999999999999999999999 8999998877 22210     00111  2


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEc
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISI  108 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~  108 (159)
                      +++|+.         .++ .+|+.+++.+
T Consensus        79 ~~~q~~---------~l~-~ltv~e~l~~   97 (158)
T 1htw_A           79 KMIYHF---------DLY-RLADPEELEF   97 (158)
T ss_dssp             EEEEEE---------ECT-TCSCTTHHHH
T ss_pred             cceecc---------ccc-cCCcHHHHHH
Confidence            677763         355 5677777743

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.40  E-value=3.2e-13  Score=102.29  Aligned_cols=78  Identities=26%  Similarity=0.414  Sum_probs=55.5

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |++.+|+++||++|.+..  .+++.++++|+|||||||||||+||++.+... ...+.....++++.+    .....|.+
T Consensus         1 M~i~~l~l~nF~~~~~~~--i~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~-~~~~~~~~~~~~~~~----~~~~~v~~   73 (339)
T 3qkt_A            1 MKLERVTVKNFRSHSDTV--VEFKEGINLIIGQNGSGKSSLLDAILVGLYWP-LRIKDIKKDEFTKVG----ARDTYIDL   73 (339)
T ss_dssp             CEEEEEEEEEETTEEEEE--EECCSEEEEEECCTTSSHHHHHHHHHHHHHCS-CCCTTCCHHHHBCTT----CSEEEEEE
T ss_pred             CeEEEEEEEcccCccCeE--EcCCCCeEEEECCCCCCHHHHHHHHHHHhcCC-cccCcCCHHHHhcCC----CCeEEEEE
Confidence            889999999999998754  35778999999999999999999997766432 122222223433322    24567888


Q ss_pred             EEEcC
Q psy17514         81 TFDNS   85 (159)
Q Consensus        81 v~q~~   85 (159)
                      +|+..
T Consensus        74 ~~~~~   78 (339)
T 3qkt_A           74 IFEKD   78 (339)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            88764

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.39  E-value=1.1e-12  Score=101.64  Aligned_cols=109  Identities=19%  Similarity=0.286  Sum_probs=72.1

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |++..|+++||+.|.+..  ..++.++++|+|||||||||||++|++++.+.++.       ++++.+.    ....|..
T Consensus        38 m~l~~L~i~nf~~l~~v~--l~~~~G~~~lvG~NGaGKStLl~aI~~l~~~~~~~-------~~i~~g~----~~~~v~~  104 (415)
T 4aby_A           38 PRLSRLEIRNLATITQLE--LELGGGFCAFTGETGAGKSIIVDALGLLLGGRANH-------DLIRSGE----KELLVTG  104 (415)
T ss_dssp             CCCCEEEEEEETTEEEEE--EECCSSEEEEEESHHHHHHHHTHHHHHHTTCCCCG-------GGBCTTC----SEEEEEE
T ss_pred             cEeeeehhccccceeeEE--EecCCCcEEEECCCCCCHHHHHHHHHHHhCCCccH-------HHhcCCC----CeEEEEE
Confidence            667789999997776554  34665599999999999999999999999876432       2222122    3455666


Q ss_pred             EE-EcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHh
Q psy17514         81 TF-DNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSS  132 (159)
Q Consensus        81 v~-q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~  132 (159)
                      .| +.++          .....+.+.+..+....+++++.+.....+.++...
T Consensus       105 ~~~~~~~----------~~~~~l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~  147 (415)
T 4aby_A          105 FWGDGDE----------SEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQG  147 (415)
T ss_dssp             EC------------------CEEEEEEETTSCEEEEETTEEECHHHHHHHHTT
T ss_pred             EEEecCC----------CceEEEEEEEecCCceEEEECCEECCHHHHHHHHhh
Confidence            66 3321          122456666666666678889988776556655543

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.39  E-value=7.4e-13  Score=105.45  Aligned_cols=110  Identities=19%  Similarity=0.278  Sum_probs=78.1

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |++..|+++||+.|.+..  .+++.++++|+|+|||||||||++|++++...+.       .++++.+.    ..+.|..
T Consensus        38 M~l~~L~i~nf~~~~~~~--l~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~~-------~~~i~~g~----~~a~v~~  104 (517)
T 4ad8_A           38 PRLSRLEIRNLATITQLE--LELGGGFCAFTGETGAGKSIIVDALGLLLGGRAN-------HDLIRSGE----KELLVTG  104 (517)
T ss_dssp             CCCCEEEEESBTTBSCEE--EECCCSEEEEEESHHHHHHHHTHHHHHHTCSCCC-------GGGBCTTC----SEEEEEE
T ss_pred             ceeeeeecccccceeeEE--EecCCCeEEEEcCCCCCHHHHHHHHHHHhcCCcH-------HHHhcCCC----CcEEEEE
Confidence            778899999999998755  3577789999999999999999999999876521       12332222    3567887


Q ss_pred             EE-EcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhc
Q psy17514         81 TF-DNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSV  133 (159)
Q Consensus        81 v~-q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~  133 (159)
                      +| ...+          ...+.+.+.+...+++.+++|+.+.....+.++...+
T Consensus       105 ~f~~~~~----------~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~l  148 (517)
T 4ad8_A          105 FWGDGDE----------SEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGR  148 (517)
T ss_dssp             EC------------------CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTTT
T ss_pred             EEEecCC----------CCeEEEEEEEecCCCcEEEECCEECCHHHHHHHhhhh
Confidence            77 5421          1234677777776667789999888776677766543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.36  E-value=2.9e-13  Score=104.85  Aligned_cols=96  Identities=15%  Similarity=0.156  Sum_probs=69.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEE
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQI  106 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i  106 (159)
                      +++|+||||||||||+++|+|+..|+.|++.+.+ .+..         +  .++++|.+          .++.+++.+++
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g-~~~t---------~--~~~v~q~~----------~~~~ltv~D~~  128 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVT---------M--ERHPYKHP----------NIPNVVFWDLP  128 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC--------------C--CCEEEECS----------SCTTEEEEECC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEECC-eecc---------e--eEEecccc----------ccCCeeehHhh
Confidence            9999999999999999999999999999998877 2210         1  15688873          45678999987


Q ss_pred             EcCCceEEEECCEEeCHHHHHHHHHhcCccc-CCCeeEEeC---h---hHhHhhcC
Q psy17514        107 SIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-NNPHFLIMQ---G---RVTKVLNM  155 (159)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~l~~q---~---~ia~~l~~  155 (159)
                      .++.           ...++.++++.+++.. +....+++.   +   .+|+++..
T Consensus       129 g~~~-----------~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~  173 (413)
T 1tq4_A          129 GIGS-----------TNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM  173 (413)
T ss_dssp             CGGG-----------SSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             cccc-----------hHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHh
Confidence            6642           1235778899888875 322235552   2   88888876

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.34  E-value=3.2e-16  Score=123.02  Aligned_cols=111  Identities=13%  Similarity=0.052  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCccc-c-hhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVK-Q-VRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVI  102 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~-i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv  102 (159)
                      |++++|+||||||||||+++|+|+..++.| + +++++  +          .++.+++++|....      +.+++.+++
T Consensus       138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg--~----------~~~~i~~vpq~~~l------~~~~~~~tv  199 (460)
T 2npi_A          138 GPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL--D----------PQQPIFTVPGCISA------TPISDILDA  199 (460)
T ss_dssp             CCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC--C----------TTSCSSSCSSCCEE------EECCSCCCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC--C----------ccCCeeeeccchhh------cccccccch
Confidence            799999999999999999999999999999 8 88876  1          12346777776310      012334466


Q ss_pred             EEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-CCCeeEEe-Ch---hHhHh--hcCCCC
Q psy17514        103 CRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-NNPHFLIM-QG---RVTKV--LNMKPH  158 (159)
Q Consensus       103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~l~~-q~---~ia~~--l~~~p~  158 (159)
                      .+|+ ++...  . .+. ...+++.++++.+++.. ..+..||+ |+   ++|++  |+.+|+
T Consensus       200 ~eni-~~~~~--~-~~~-~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~  257 (460)
T 2npi_A          200 QLPT-WGQSL--T-SGA-TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQ  257 (460)
T ss_dssp             TCTT-CSCBC--B-SSC-CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             hhhh-ccccc--c-cCc-chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcc
Confidence            6666 54321  0 111 11234556778888865 23667777 33   88888  888774

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.33  E-value=5.3e-14  Score=99.81  Aligned_cols=112  Identities=14%  Similarity=0.153  Sum_probs=69.0

Q ss_pred             eeecCCeeeecCC-CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCC
Q psy17514         12 KSYGTRVEINDFD-REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNC   90 (159)
Q Consensus        12 ~~~~~~~~l~~~~-~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   90 (159)
                      ++|+++.+|+++. +++++|+|||||||||||++|+|+ .|++|+|....   + . ... ...++.+++++|++     
T Consensus         8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~---~-~-~~~-~~~~~~ig~v~q~~-----   75 (208)
T 3b85_A            8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRII---L-T-RPA-VEAGEKLGFLPGTL-----   75 (208)
T ss_dssp             CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEE---E-E-ECS-CCTTCCCCSSCC-------
T ss_pred             CCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEE---e-c-CCc-hhhhcceEEecCCH-----
Confidence            5677777788776 899999999999999999999999 99999985321   0 0 110 11234577877763     


Q ss_pred             CCCccCCCeEEEEEEE-EcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEe--Ch-hHhHhhcCCCC
Q psy17514         91 PIGYENDNTIVICRQI-SIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIM--QG-RVTKVLNMKPH  158 (159)
Q Consensus        91 ~~~~~~~~~~tv~~~i-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~--q~-~ia~~l~~~p~  158 (159)
                                  .+|+ .+.......... ....+++.++++. ++         +  |+ +|||+|+.+|+
T Consensus        76 ------------~enl~~~~~~~~~~~~~-~~~~~~~~~~l~~-gl---------Gq~qrv~lAraL~~~p~  124 (208)
T 3b85_A           76 ------------NEKIDPYLRPLHDALRD-MVEPEVIPKLMEA-GI---------VEVAPLAYMRGRTLNDA  124 (208)
T ss_dssp             ----------------CTTTHHHHHHHTT-TSCTTHHHHHHHT-TS---------EEEEEGGGGTTCCBCSE
T ss_pred             ------------HHHHHHHHHHHHHHHHH-hccHHHHHHHHHh-CC---------chHHHHHHHHHHhcCCC
Confidence                        3444 221000000001 0123467777777 55         6  33 99999999985

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.32  E-value=3.7e-14  Score=106.35  Aligned_cols=101  Identities=12%  Similarity=-0.002  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR  104 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~  104 (159)
                      +++++|+||||||||||+++|++++.|..|.                    ..+++++|++         .+++. |+.+
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~--------------------~~v~~v~qd~---------~~~~~-t~~e  139 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQALLARWDHH--------------------PRVDLVTTDG---------FLYPN-AELQ  139 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTSTTC--------------------CCEEEEEGGG---------GBCCH-HHHH
T ss_pred             CEEEEEECCCCchHHHHHHHHHhhccccCCC--------------------CeEEEEecCc---------cCCcc-cHHH
Confidence            6899999999999999999999999876331                    3488999984         35565 7777


Q ss_pred             EEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514        105 QISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--NNPHFLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       105 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~l~~-q~---~ia~~l~~~p~  158 (159)
                      |+.+...  +. .......+.+.++++.++-..  ..+..+|+ |+   .+|++++.+|+
T Consensus       140 ~~~~~~~--~g-~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~  196 (312)
T 3aez_A          140 RRNLMHR--KG-FPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPD  196 (312)
T ss_dssp             HTTCTTC--TT-SGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCS
T ss_pred             HHHHHHh--cC-CChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCC
Confidence            7654211  00 011223466778888776221  23556666 43   78888888875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.32  E-value=8.1e-14  Score=104.01  Aligned_cols=103  Identities=16%  Similarity=0.108  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh---hhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCC---C----c
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA---NTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPI---G----Y   94 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~---~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~---~----~   94 (159)
                      +++++|+|||||||||||++|+|+..|+.|++.+   .| +++.. .. .....+.+++++|.|+......   .    +
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g-~~~t~-~~-~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~  245 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRG-RHTTT-TA-QLLKFDFGGYVVDTPGFANLEINDIEPEELK  245 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC--------------CCC-SC-CEEECTTSCEEESSCSSTTCCCCSSCHHHHG
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCC-CCcee-ee-EEEEcCCCCEEEECcCCCccCCCcCCHHHHH
Confidence            6899999999999999999999999999999988   55 33211 11 1111124789999875322111   0    2


Q ss_pred             cCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc
Q psy17514         95 ENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN  136 (159)
Q Consensus        95 ~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  136 (159)
                      .+++++++ +|+.++..   .  .......++.++++.++|.
T Consensus       246 ~l~~~~~~-~n~~~~~~---~--~~~e~~~~v~~~l~~~~L~  281 (301)
T 1u0l_A          246 HYFKEFGD-KQCFFSDC---N--HVDEPECGVKEAVENGEIA  281 (301)
T ss_dssp             GGSTTSSS-CCCSSTTC---C--SSSCSSCHHHHHHHHTSSC
T ss_pred             HHHHhccc-ccCcCCCC---c--CCCCCCcHHHHHHHcCCCC
Confidence            46888899 99988632   1  1223346789999999995

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.30  E-value=9.4e-12  Score=94.85  Aligned_cols=75  Identities=23%  Similarity=0.364  Sum_probs=53.9

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |.+..|++.||+.|.+..  ..++.++++|+|||||||||||++|+++....   .+.....++++.+.    ....|..
T Consensus         4 M~i~~L~l~~~~~~~~~~--~~~~~g~~~i~G~nG~GKttll~ai~~~~~g~---~R~~~~~~lI~~g~----~~~~V~~   74 (359)
T 2o5v_A            4 VRLSALSTLNYRNLAPGT--LNFPEGVTGIYGENGAGKTNLLEAAYLALTGQ---TDAPRIEQLIQAGE----TEAYVRA   74 (359)
T ss_dssp             CCEEEEEEESBTTCCSEE--EECCSEEEEEECCTTSSHHHHHHHHHHHHHSC---CCCSSGGGGBCTTC----SCEEEEE
T ss_pred             cEEeEEEEeCccceeeeE--EEEcCCeEEEECCCCCChhHHHHHHHHhccCC---CCCCCHHHHhccCC----CcEEEEE
Confidence            678899999998886644  35666699999999999999999999886432   33333345554333    2456777


Q ss_pred             EEEc
Q psy17514         81 TFDN   84 (159)
Q Consensus        81 v~q~   84 (159)
                      .++.
T Consensus        75 ~~~~   78 (359)
T 2o5v_A           75 DLQQ   78 (359)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            6765

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.25  E-value=3.1e-13  Score=96.53  Aligned_cols=72  Identities=13%  Similarity=0.139  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhCC--cccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEE
Q psy17514         24 DREFNAITGLNGTGKSNILDGICFVLGI--QVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIV  101 (159)
Q Consensus        24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~t  101 (159)
                      .+++++|+||||||||||+++|+++.+|  ..|.+.+.+.      .. ....+..++|+||.+         ..|+.++
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr------~~-~~~e~~gi~y~fq~~---------~~f~~~~   78 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTR------QP-RPGEVHGEHYFFVNH---------DEFKEMI   78 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECS------CC-CTTCCBTTTBEECCH---------HHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCC------CC-CcccccCceEEECCH---------HHHHHHH
Confidence            3889999999999999999999999986  5777777651      11 111235688999874         3455555


Q ss_pred             E----EEEEEcCCc
Q psy17514        102 I----CRQISIPSN  111 (159)
Q Consensus       102 v----~~~i~~~~~  111 (159)
                      +    .+++.+.+.
T Consensus        79 ~~~~f~E~~~~~~~   92 (219)
T 1s96_A           79 SRDAFLEHAEVFGN   92 (219)
T ss_dssp             HTTCEEEEEEETTE
T ss_pred             hcCHHHHHHHHHhc
Confidence            5    788877543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.23  E-value=3.8e-12  Score=98.73  Aligned_cols=84  Identities=17%  Similarity=0.161  Sum_probs=54.6

Q ss_pred             EEEeCeeeecCCeeeecCC-----CCe--EEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGFKSYGTRVEINDFD-----REF--NAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~~~~~~~~~l~~~~-----~~~--~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      |++.+-+.|++.+ +.+++     |++  ++|+||||||||||+++|+|+.        +.+ .++.. .. ....+..+
T Consensus        17 l~~~~~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g-~~~~~-~~-~~~~~~~i   84 (427)
T 2qag_B           17 VPLAGHVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEG-EPATH-TQ-PGVQLQSN   84 (427)
T ss_dssp             CCCCCCC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C---------CC-SSCEEEEE
T ss_pred             EEEeeEEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccC-CcCCC-CC-ccceEeeE
Confidence            4555556777665 66665     788  9999999999999999999873        112 11111 11 12245689


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCC
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPS  110 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~  110 (159)
                      ++++|.+         .+++.+|+.+++.++.
T Consensus        85 ~~v~Q~~---------~l~~~ltv~D~~~~g~  107 (427)
T 2qag_B           85 TYDLQES---------NVRLKLTIVSTVGFGD  107 (427)
T ss_dssp             EEEEEC-----------CEEEEEEEEEECCCC
T ss_pred             EEEeecC---------ccccccchhhhhhhhh
Confidence            9999985         4567899999998864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.20  E-value=9.4e-13  Score=98.29  Aligned_cols=111  Identities=12%  Similarity=0.104  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh---hhHHHHHHhhCCCceeE-EEEEEEEEcCCCCCCCCCccCCCeE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA---NTLQELIYKNGQAGVTK-ASVTLTFDNSDKKNCPIGYENDNTI  100 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~---~~~~~~~~~~~~~~~~~-~~i~~v~q~~~~~~~~~~~~~~~~~  100 (159)
                      +++++|+||||||||||+++|. +..|+.|+|+.   .| ++..   ....... ..+++++|.|+...    +.+++++
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G-~~~t---~~~~~~~~~~~g~v~d~pg~~~----~~l~~~l  235 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERG-RHTT---TGVRLIPFGKGSFVGDTPGFSK----VEATMFV  235 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC----------CC---CCEEEEEETTTEEEESSCCCSS----CCGGGTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCC-CCce---eeEEEEEcCCCcEEEECcCcCc----CcccccC
Confidence            6899999999999999999999 99999999988   55 2211   1111111 14799999875321    1233556


Q ss_pred             EEEEEE--EcCCceE--EEEC---CEEeCHHHHHHHHHhcCccc----CCCeeEEe
Q psy17514        101 VICRQI--SIPSNTR--YMIN---GSSVNPKRVSDLFSSVNLNV----NNPHFLIM  145 (159)
Q Consensus       101 tv~~~i--~~~~~~~--~~~~---~~~~~~~~~~~~l~~~~l~~----~~~~~l~~  145 (159)
                      |+ +++  .++....  ++..   ........+.++++.++|..    .++..+++
T Consensus       236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~  290 (302)
T 2yv5_A          236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKV  290 (302)
T ss_dssp             CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTC
T ss_pred             CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            77 776  3331000  0011   12233467899999999974    34555655

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.19  E-value=1.2e-11  Score=94.48  Aligned_cols=49  Identities=24%  Similarity=0.399  Sum_probs=42.4

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      |.+..|+++||.+|.+..  .+++.++++|+|||||||||||++|++++..
T Consensus         1 M~~~~l~~~~f~~~~~~~--i~~~~g~~~i~G~NGaGKTTll~ai~~al~g   49 (365)
T 3qf7_A            1 MRPERLTVRNFLGLKNVD--IEFQSGITVVEGPNGAGKSSLFEAISFALFG   49 (365)
T ss_dssp             CEEEEEEEEEETTEEEEE--EECCSEEEEEECCTTSSHHHHHHHHHHHHHS
T ss_pred             CeeEEEEEeCccCccceE--EecCCCeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            888999999998887754  3566679999999999999999999998754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.16  E-value=1.2e-11  Score=92.30  Aligned_cols=84  Identities=11%  Similarity=0.200  Sum_probs=35.2

Q ss_pred             eCe-eeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHH-hCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCC
Q psy17514          9 DGF-KSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFV-LGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSD   86 (159)
Q Consensus         9 ~~~-~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~   86 (159)
                      +|+ +.|+.+.++.+++..+ +|+||||||||||++.|++. +.+.+| +.+.+ .++..  .   .....+++++|.. 
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I-~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g-~~~~~--t---~~~~~~~~~~q~~-   72 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL-MVVGESGLGKSTLINSLFLTDLYPERV-ISGAA-EKIER--T---VQIEASTVEIEER-   72 (301)
T ss_dssp             ----------------CEEE-EEEEETTSSHHHHHHHHHC-------------------------------CEEEEC---
T ss_pred             CCCcceECCEEEEcCCCEEE-EEECCCCCCHHHHHHHHhCCCccCCCC-cccCC-cccCC--c---ceEeeEEEEecCC-
Confidence            477 8898888888888777 99999999999999999987 777777 65554 22211  0   1134577888764 


Q ss_pred             CCCCCCCccCCCeEEEEEEEEcC
Q psy17514         87 KKNCPIGYENDNTIVICRQISIP  109 (159)
Q Consensus        87 ~~~~~~~~~~~~~~tv~~~i~~~  109 (159)
                              .....+++.++..++
T Consensus        73 --------~~~~~ltv~Dt~g~~   87 (301)
T 2qnr_A           73 --------GVKLRLTVVDTPGYG   87 (301)
T ss_dssp             ---------CCEEEEEEEEC---
T ss_pred             --------CcccCcchhhhhhhh
Confidence                    345678999998775

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.16  E-value=1e-11  Score=96.38  Aligned_cols=87  Identities=9%  Similarity=0.105  Sum_probs=53.6

Q ss_pred             EEEEeCe-eeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc--chhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK--QVRANTLQELIYKNGQAGVTKASVTLT   81 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g--~i~~~~~~~~~~~~~~~~~~~~~i~~v   81 (159)
                      .|.++|+ +.|+...++.+++..+ +|+|+||||||||+++|+|...+..|  .+....       ..  ......++++
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsf~I-~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~-------~~--t~~~~~i~~v   80 (418)
T 2qag_C           11 YVGFANLPNQVYRKSVKRGFEFTL-MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI-------KK--TVQVEQSKVL   80 (418)
T ss_dssp             ----CCCCCCTTTTTCC-CCCEEE-EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------------CCEEEEEECC
T ss_pred             cEEEEecceeECCEEEecCCCEEE-EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCC-------cc--ceeeeeEEEE
Confidence            4889999 9999888889888777 99999999999999999998875443  221111       11  1124568888


Q ss_pred             EEcCCCCCCCCCccCCCeEEEEEEEEcCC
Q psy17514         82 FDNSDKKNCPIGYENDNTIVICRQISIPS  110 (159)
Q Consensus        82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~  110 (159)
                      +|.+         .++..+++.+++.++.
T Consensus        81 ~q~~---------~~~~~Ltv~Dt~g~~~  100 (418)
T 2qag_C           81 IKEG---------GVQLLLTIVDTPGFGD  100 (418)
T ss_dssp             ---------------CEEEEEEECC----
T ss_pred             EecC---------Ccccceeeeechhhhh
Confidence            8864         3566789999988753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.16  E-value=2.4e-11  Score=95.63  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=34.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      .++++|+|||||||||||++|+|++.|++|+|.+.|
T Consensus        29 ~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g   64 (483)
T 3euj_A           29 ELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN   64 (483)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred             cceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence            489999999999999999999999999999999987

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.13  E-value=4e-12  Score=99.29  Aligned_cols=80  Identities=15%  Similarity=0.005  Sum_probs=57.0

Q ss_pred             EEEeCe-eeec-CCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHH--HHHHhhCC---Ccee
Q psy17514          6 MVLDGF-KSYG-TRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ--ELIYKNGQ---AGVT   74 (159)
Q Consensus         6 l~l~~~-~~~~-~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~--~~~~~~~~---~~~~   74 (159)
                      ++++++ +.|+ +..+|+++-    |++++|+||||||||||+++|+++..++.|.+.+.|.+  ++......   ....
T Consensus       132 l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l  211 (438)
T 2dpy_A          132 LQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGR  211 (438)
T ss_dssp             TTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHH
T ss_pred             eEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcccccc
Confidence            456778 7886 455555442    68999999999999999999999999999988887731  33221100   0113


Q ss_pred             EEEEEEEEEcC
Q psy17514         75 KASVTLTFDNS   85 (159)
Q Consensus        75 ~~~i~~v~q~~   85 (159)
                      ++.+++++|.+
T Consensus       212 ~r~i~~v~q~~  222 (438)
T 2dpy_A          212 ARSVVIAAPAD  222 (438)
T ss_dssp             HTEEEEEECTT
T ss_pred             CceEEEEECCC
Confidence            56799999963

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.12  E-value=6.5e-13  Score=101.04  Aligned_cols=107  Identities=10%  Similarity=-0.027  Sum_probs=59.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC-Ccccchhhh-hHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG-IQVKQVRAN-TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVI  102 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~-~~~g~i~~~-~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv  102 (159)
                      +++++|+||||||||||+++|.|... +..|++... | ....      ......+++++|++         .+++..++
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G-~g~~------tt~~~~i~~v~q~~---------~l~dtpgv  278 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSG-LGQH------TTTAARLYHFPHGG---------DVIDSPGV  278 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------------CCCEEEECTTSC---------EEEECHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHhccccccccCCccccCC-CCcc------ceEEEEEEEECCCC---------EecCcccH
Confidence            68999999999999999999999999 999999875 4 2211      11345677777653         23333344


Q ss_pred             EEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEeCh---hHhHhhc
Q psy17514        103 CRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIMQG---RVTKVLN  154 (159)
Q Consensus       103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~q~---~ia~~l~  154 (159)
                      .++   +..   .. ........+.++++.+++..   ..+..+++|.   +||+++.
T Consensus       279 ~e~---~l~---~l-~~~e~~~~~~e~l~~~gl~~f~~~~~~~lSG~~~r~ala~gli  329 (358)
T 2rcn_A          279 REF---GLW---HL-EPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAI  329 (358)
T ss_dssp             HTC---CCC---CC-CHHHHHHTSGGGGGGTTCSSSTTCCSSSCTTCHHHHHHHHTSS
T ss_pred             HHh---hhc---CC-CHHHHHHHHHHHHHHcCCchhcCCCcccCCHHHHHHHHHhcCC
Confidence            332   110   00 11111234567778888865   3455666543   6665543

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.11  E-value=1.6e-11  Score=86.72  Aligned_cols=54  Identities=17%  Similarity=0.126  Sum_probs=36.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNS   85 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~   85 (159)
                      +++++|+||||||||||+++|+|+++...+.+...+      ... ....+..++++||++
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~------~~~-~~~~~~~i~~~~q~~   73 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATT------RAP-RPGEVDGVDYHFIDP   73 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEES------SCC-CTTCCBTTTBEECCH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccc------cCC-cccccCCCeeEecCH
Confidence            799999999999999999999999852222211111      011 111245688999874

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.07  E-value=3.3e-11  Score=84.14  Aligned_cols=54  Identities=15%  Similarity=0.149  Sum_probs=41.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNS   85 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~   85 (159)
                      +++++|+||||||||||+++|++++. ++| +.+++. +.    .+....++.+++++|+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~-~~----~~~~~~~~~ig~~~~~~   54 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGF-YT----EEVRQGGRRIGFDVVTL   54 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEE-EC----CEEETTSSEEEEEEEET
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCE-ec----chhHhhhceEEEEEEec
Confidence            57899999999999999999999999 888 887762 11    11111356789999974

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.06  E-value=5.8e-12  Score=93.97  Aligned_cols=49  Identities=16%  Similarity=0.082  Sum_probs=40.1

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA   58 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~   58 (159)
                      |+++|+ +.|+ ..+|++++     +++++|+||||||||||+++|+|++   .|+|..
T Consensus       102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~  156 (305)
T 2v9p_A          102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS  156 (305)
T ss_dssp             HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC
T ss_pred             EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE
Confidence            456778 7776 55666665     7899999999999999999999998   677743

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.04  E-value=5.2e-12  Score=103.41  Aligned_cols=29  Identities=28%  Similarity=0.627  Sum_probs=24.1

Q ss_pred             eeeecCC-----CCeEEEEcCCCCcHHHHHHHHH
Q psy17514         18 VEINDFD-----REFNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        18 ~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~   46 (159)
                      .+|+++|     +++++|+||||||||||+++|.
T Consensus       336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             cccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            3466665     7999999999999999998764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.03  E-value=1.1e-10  Score=83.16  Aligned_cols=55  Identities=15%  Similarity=0.089  Sum_probs=38.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNS   85 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~   85 (159)
                      +++++|+||||||||||+++|++++ |  |.+.+ + .++.. .......+..++++||++
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g-~~~~~-~~~~~~~~~~i~~~~~~~   77 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-S-VSCTT-RKKREKEKEGVDYYFIDK   77 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-C-CCEEC-SCCCSSCCBTTTBEECCH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-e-ecccC-CCCCcccccCCeEEECCH
Confidence            7899999999999999999999998 5  78877 4 22111 011111235678888874

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.03  E-value=1.7e-12  Score=105.17  Aligned_cols=80  Identities=19%  Similarity=0.113  Sum_probs=41.4

Q ss_pred             EEEEeCe-eeecCC--eeee------------cCCCCeEEEEcCCCCcHHHHHHHHHHHhCC-cccchhhhhHHHHH-Hh
Q psy17514          5 SMVLDGF-KSYGTR--VEIN------------DFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRANTLQELI-YK   67 (159)
Q Consensus         5 ~l~l~~~-~~~~~~--~~l~------------~~~~~~~~liG~NGaGKSTLl~~i~~~~~~-~~g~i~~~~~~~~~-~~   67 (159)
                      .++++|+ ..|+..  ++++            +++-..++|+|||||||||||++|+|+..| ++|.+.+.+ .++. ..
T Consensus        10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g-~~i~~~~   88 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP-LVLKLKK   88 (608)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC-------CCCSC-EEEEEEE
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcC-EEEEEec
Confidence            4678888 788642  2222            233456999999999999999999999888 799998887 2321 11


Q ss_pred             hCCCceeEEEEEEEEEcC
Q psy17514         68 NGQAGVTKASVTLTFDNS   85 (159)
Q Consensus        68 ~~~~~~~~~~i~~v~q~~   85 (159)
                      .......+..++++||++
T Consensus        89 ~~~~~~~~~~i~~v~Q~~  106 (608)
T 3szr_A           89 LVNEDKWRGKVSYQDYEI  106 (608)
T ss_dssp             CSSSSCCEEEESCC---C
T ss_pred             CCccccceeEEeeecccc
Confidence            111223578899999975

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.00  E-value=4.4e-11  Score=90.84  Aligned_cols=55  Identities=16%  Similarity=0.143  Sum_probs=44.8

Q ss_pred             EEEeCe-eeec-CCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514          6 MVLDGF-KSYG-TRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus         6 l~l~~~-~~~~-~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      ++.+++ +.|+ +..+++++-    |++++|+||||||||||+++|+++..|+.|.+.+.|
T Consensus        46 i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G  106 (347)
T 2obl_A           46 LLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG  106 (347)
T ss_dssp             TTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred             eeecccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence            566788 8887 555555442    789999999999999999999999999988776654

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.96  E-value=3.5e-10  Score=81.77  Aligned_cols=53  Identities=17%  Similarity=0.258  Sum_probs=33.5

Q ss_pred             cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEc
Q psy17514         15 GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDN   84 (159)
Q Consensus        15 ~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~   84 (159)
                      ++..+|.+++     +++++|+||||||||||+++|++++    |.+.++.             .++.+++++|+
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~-------------~~~~i~~v~~d   67 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQ-------------RQRKVVILSQD   67 (245)
T ss_dssp             -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCG-------------GGCSEEEEEGG
T ss_pred             CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccc-------------cCCceEEEeCC
Confidence            4556777777     5689999999999999999999987    4444430             23458889887

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.95  E-value=1.5e-11  Score=93.08  Aligned_cols=55  Identities=22%  Similarity=0.152  Sum_probs=45.3

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      |+++++ +.|+...++.+++     +++++|+|+||||||||+++|++++.|+.|++.+.+
T Consensus        30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~   90 (337)
T 2qm8_A           30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA   90 (337)
T ss_dssp             HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence            566777 7776555666555     679999999999999999999999999888887765

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.94  E-value=1.8e-10  Score=84.23  Aligned_cols=42  Identities=14%  Similarity=0.202  Sum_probs=36.4

Q ss_pred             eeecCC---CCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhh
Q psy17514         19 EINDFD---REFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANT   60 (159)
Q Consensus        19 ~l~~~~---~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~   60 (159)
                      +|.+++   +++++|+||||||||||+++|++++.|+ +|+|.+.+
T Consensus        16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g   61 (261)
T 2eyu_A           16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE   61 (261)
T ss_dssp             HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence            445554   7899999999999999999999999987 89988766

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.94  E-value=6.6e-10  Score=76.15  Aligned_cols=36  Identities=14%  Similarity=0.117  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCCcHHHHHH------------HHHHHhCCcccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILD------------GICFVLGIQVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~------------~i~~~~~~~~g~i~~~~   60 (159)
                      +++++|+||||||||||++            .+.++..++.|...+.+
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~   56 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTG   56 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHH
Confidence            7899999999999999999            88888888877776654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.90  E-value=4e-10  Score=84.05  Aligned_cols=75  Identities=15%  Similarity=0.185  Sum_probs=49.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh---CCCce-eEEEEEEEEEcCCCCCCCCCccCCCeE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN---GQAGV-TKASVTLTFDNSDKKNCPIGYENDNTI  100 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~---~~~~~-~~~~i~~v~q~~~~~~~~~~~~~~~~~  100 (159)
                      +++++|+|||||||||+++.|++++.++.|++.+.+. +..+..   +...+ .+..|++++|++.        ..++..
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~-d~~r~~a~~ql~~~~~~~~i~~v~q~~~--------~~~~~~  170 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG-DTFRAAASDQLEIWAERTGCEIVVAEGD--------KAKAAT  170 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC-CCSCHHHHHHHHHHHHHHTCEEECCC----------CCCHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee-cccchhHHHHHHHHHHhcCceEEEecCC--------ccCHHH
Confidence            6899999999999999999999999999999887662 211000   00000 1345889998742        044555


Q ss_pred             EEEEEEEc
Q psy17514        101 VICRQISI  108 (159)
Q Consensus       101 tv~~~i~~  108 (159)
                      ++.+++.+
T Consensus       171 ~v~e~l~~  178 (302)
T 3b9q_A          171 VLSKAVKR  178 (302)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666544

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.90  E-value=5.7e-10  Score=83.26  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         24 DREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      .+++++|+||||||||||++.|++++.|+.|++.+.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g  137 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA  137 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            3789999999999999999999999999999988766

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.89  E-value=3e-10  Score=90.58  Aligned_cols=55  Identities=15%  Similarity=0.077  Sum_probs=44.0

Q ss_pred             EEEeCe-eeecCCeeeecCC------CCeEEEEcCCCCcHHHHHHH--HHHHhCCcccchhhhh
Q psy17514          6 MVLDGF-KSYGTRVEINDFD------REFNAITGLNGTGKSNILDG--ICFVLGIQVKQVRANT   60 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~------~~~~~liG~NGaGKSTLl~~--i~~~~~~~~g~i~~~~   60 (159)
                      ++.+++ +...+..+|++++      +++++|+||||||||||+++  ++|+++|..|.+++.+
T Consensus        13 ~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g   76 (525)
T 1tf7_A           13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF   76 (525)
T ss_dssp             -CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            555667 4344666777776      47899999999999999999  7899998889998876

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.87  E-value=5.2e-10  Score=84.42  Aligned_cols=36  Identities=14%  Similarity=0.227  Sum_probs=34.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      +++++|+||||||||||+++|+++++|+.|.+.+.+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~  206 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  206 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence            789999999999999999999999999999998877

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.85  E-value=2.3e-10  Score=80.31  Aligned_cols=52  Identities=13%  Similarity=0.094  Sum_probs=29.9

Q ss_pred             EEEEeCe-eeecCCeeeecCC---CCeEEEEcCCCCcHHHHHHHHHHHh-----CCcccchh
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD---REFNAITGLNGTGKSNILDGICFVL-----GIQVKQVR   57 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~---~~~~~liG~NGaGKSTLl~~i~~~~-----~~~~g~i~   57 (159)
                      .|+++|+ +.|+. .++.++.   +..++|+|+||||||||+++|++..     .|+.|..+
T Consensus         3 ~l~~~~~~~~~~~-~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~   63 (210)
T 1pui_A            3 NLNYQQTHFVMSA-PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ   63 (210)
T ss_dssp             --------CEEEE-SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred             chhhhhhhheeec-CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence            4889999 88963 4555554   5679999999999999999998876     45555443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.85  E-value=1e-09  Score=77.34  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=30.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC---cccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI---QVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~---~~g~i~~~~   60 (159)
                      +++++|+||||||||||+++|++++.+   ..|.+..++
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~   60 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG   60 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence            789999999999999999999999975   356555443

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.85  E-value=1.5e-09  Score=81.07  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC--Ccccchhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG--IQVKQVRA   58 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~--~~~g~i~~   58 (159)
                      +++++|+||||||||||+++|++++.  |++|++.+
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v  115 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL  115 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence            57999999999999999999999998  88888776

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.83  E-value=2.1e-09  Score=75.38  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=23.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.+++|+||||||||||+++|.++++
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            57899999999999999999999875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.83  E-value=7.1e-10  Score=82.77  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh---hhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA---NTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIV  101 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~---~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~t  101 (159)
                      +++++|+||||+|||||+++|.|...+..|++..   .| +....   .....+..+++++|.|+-..+.    + .+++
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G-~~tt~---~~~~~~~~~g~v~dtpg~~~~~----l-~~lt  243 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRG-KHTTR---HVELIHTSGGLVADTPGFSSLE----F-TDIE  243 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--------------------CC---CCCEEEETTEEEESSCSCSSCC----C-TTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCC-ccccc---HHHHhhcCCEEEecCCCccccc----c-ccCC
Confidence            7899999999999999999999999999999987   44 22211   1111111268999987532111    1 1356


Q ss_pred             EEEEEE--cCCc----eEEEECC---EEeCHHHHHHHHHhcCccc
Q psy17514        102 ICRQIS--IPSN----TRYMING---SSVNPKRVSDLFSSVNLNV  137 (159)
Q Consensus       102 v~~~i~--~~~~----~~~~~~~---~~~~~~~~~~~l~~~~l~~  137 (159)
                      + +++.  ++..    ..++..+   ..+....+.++++.++|..
T Consensus       244 ~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~  287 (307)
T 1t9h_A          244 E-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ  287 (307)
T ss_dssp             H-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred             H-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence            6 6662  2200    0011111   1223357889999999964

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.82  E-value=1.1e-09  Score=83.47  Aligned_cols=75  Identities=15%  Similarity=0.185  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh---CCCce-eEEEEEEEEEcCCCCCCCCCccCCCeE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN---GQAGV-TKASVTLTFDNSDKKNCPIGYENDNTI  100 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~---~~~~~-~~~~i~~v~q~~~~~~~~~~~~~~~~~  100 (159)
                      +++++|+|||||||||+++.|++++.++.|++.+.+. +..+..   +...+ .+..|++++|++.        ..++..
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~-D~~r~~a~eql~~~~~r~~i~~v~q~~~--------~~~p~~  227 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG-DTFRAAASDQLEIWAERTGCEIVVAEGD--------KAKAAT  227 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC-CCSCHHHHHHHHHHHHHHTCEEECCSSS--------SCCHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecc-cccccchhHHHHHHHHhcCeEEEEeccc--------ccChhh
Confidence            6899999999999999999999999999999887652 211000   00000 1345889998742        034445


Q ss_pred             EEEEEEEc
Q psy17514        101 VICRQISI  108 (159)
Q Consensus       101 tv~~~i~~  108 (159)
                      ++.+++.+
T Consensus       228 tv~e~l~~  235 (359)
T 2og2_A          228 VLSKAVKR  235 (359)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            56666543

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.82  E-value=1.2e-09  Score=83.33  Aligned_cols=73  Identities=12%  Similarity=0.240  Sum_probs=47.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEE-EcCCCCCCCCCccCCCeEEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTF-DNSDKKNCPIGYENDNTIVIC  103 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~-q~~~~~~~~~~~~~~~~~tv~  103 (159)
                      +++++|+||||||||||+++|+++++|+.|.|.+.+..++    . ....+..+++++ |++..       ..+...|+.
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~----~-~~~~~~~v~~v~~q~~~~-------~~~~~~t~~  242 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL----F-LPDHPNHVHLFYPSEAKE-------EENAPVTAA  242 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC----C-CTTCSSEEEEECC-----------------CCHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc----C-ccccCCEEEEeecCcccc-------ccccccCHH
Confidence            7899999999999999999999999999999988762111    1 111345788998 66421       012344666


Q ss_pred             EEEEcC
Q psy17514        104 RQISIP  109 (159)
Q Consensus       104 ~~i~~~  109 (159)
                      +++...
T Consensus       243 ~~i~~~  248 (361)
T 2gza_A          243 TLLRSC  248 (361)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.82  E-value=1.5e-09  Score=75.17  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQEL   64 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~   64 (159)
                      +++++|+||||||||||+++|++.  +..|.+.+++ +++
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~-d~~   45 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHS-DDL   45 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECT-THH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcc-cch
Confidence            678999999999999999999987  5677777776 344

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.80  E-value=1.3e-09  Score=82.16  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=33.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      +++++|+|||||||||+++.|++++.++.|++.+.+
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g  164 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA  164 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence            789999999999999999999999999999887765

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.80  E-value=2.9e-09  Score=74.46  Aligned_cols=26  Identities=19%  Similarity=0.402  Sum_probs=24.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++++|+||||||||||+++|+++++
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            78999999999999999999999964

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.78  E-value=2.9e-09  Score=81.22  Aligned_cols=35  Identities=20%  Similarity=0.186  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcc----cchhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQV----KQVRAN   59 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~----g~i~~~   59 (159)
                      ++.++|+||||||||||+++|+|++.|+.    |++++.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~  208 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF  208 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence            56899999999999999999999999998    877653

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.77  E-value=3.1e-09  Score=75.42  Aligned_cols=27  Identities=15%  Similarity=0.423  Sum_probs=24.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +++++|+||||||||||+++|++...+
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~~~   51 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMVQL   51 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            689999999999999999999997655

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.77  E-value=1.3e-09  Score=83.55  Aligned_cols=52  Identities=15%  Similarity=0.167  Sum_probs=39.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhhHHHHHHhhCCCceeEEEEEEEEE
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTLQELIYKNGQAGVTKASVTLTFD   83 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q   83 (159)
                      +++++|+||||||||||+++|.+++.+. .|.|...+ +++      ....+..+++++|
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e-~~~------e~~~~~~~~~v~Q  188 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE-DPI------EYVFKHKKSIVNQ  188 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE-SSC------CSCCCCSSSEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec-ccH------hhhhccCceEEEe
Confidence            6799999999999999999999999887 78886554 111      1112345677887

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.77  E-value=1.9e-09  Score=77.88  Aligned_cols=36  Identities=17%  Similarity=0.158  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHH---HHhCCcccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGIC---FVLGIQVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~---~~~~~~~g~i~~~~   60 (159)
                      +++++|+||||||||||+++|+   |+..++.|++.+.+
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~   65 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLREN   65 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence            6899999999999999999999   88888888887654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.75  E-value=4.6e-09  Score=72.52  Aligned_cols=51  Identities=25%  Similarity=0.192  Sum_probs=32.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNS   85 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~   85 (159)
                      .++|+||||||||||+++|+|++.     +.+.|. +. . .......+..+++++|++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~-~~-~-~~~~~~~~~~ig~~~~~~   52 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGF-WT-E-EVRDPETKKRTGFRIITT   52 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEE-EE-E-EEC------CCEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCE-Eh-h-hhccccccceeEEEeecC
Confidence            478999999999999999999985     334331 00 0 000001345688998874

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.75  E-value=2.4e-09  Score=84.33  Aligned_cols=60  Identities=15%  Similarity=0.154  Sum_probs=42.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh---hC-CCceeEEEEEEEEEcC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK---NG-QAGVTKASVTLTFDNS   85 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~---~~-~~~~~~~~i~~v~q~~   85 (159)
                      +++++|+|+||||||||++.|++++.++.|+|.+.+. +..+.   .+ .....+..|++++|..
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~-D~~r~aa~eQL~~~~~r~~I~vV~Q~~  356 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG-DTFRAAAVEQLQVWGQRNNIPVIAQHT  356 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECC-CTTCHHHHHHHHHHHHHHTCCEECCST
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecC-cccchhhHHHHHHHHHhcCceEEeccc
Confidence            6799999999999999999999999998898887541 11100   00 0000244688999874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.74  E-value=4.1e-09  Score=81.85  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=33.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      +++++|+|||||||||||++|.+++.+..|.|...+
T Consensus       167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e  202 (418)
T 1p9r_A          167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE  202 (418)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence            689999999999999999999999999989888766

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.74  E-value=3.5e-09  Score=75.70  Aligned_cols=25  Identities=12%  Similarity=0.186  Sum_probs=17.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHH-HHh
Q psy17514         25 REFNAITGLNGTGKSNILDGIC-FVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~-~~~   49 (159)
                      +++++|+||||||||||+++|+ +++
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            6899999999999999999999 998

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.71  E-value=2.7e-09  Score=73.27  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANT   60 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~   60 (159)
                      ++++|+|+||||||||++.|.+++.++   .|.|.+++
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg   40 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA   40 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence            578999999999999999999999887   89998877

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.71  E-value=2.8e-09  Score=74.65  Aligned_cols=35  Identities=26%  Similarity=0.259  Sum_probs=29.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch--hhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQV--RANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i--~~~~   60 (159)
                      +++++|+|||||||||+.++|++.+. ..|.+  ++++
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~   61 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG   61 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence            68999999999999999999999886 45655  5554

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.70  E-value=7.3e-09  Score=72.84  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=24.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +++++|+||||||||||+++|++++++
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~   32 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLGE   32 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            678999999999999999999998763

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.70  E-value=1.1e-08  Score=70.57  Aligned_cols=29  Identities=17%  Similarity=0.188  Sum_probs=25.8

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         23 FDREFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        23 ~~~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.+++++|+||||||||||+++|.+..++
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~   31 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD   31 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence            34789999999999999999999998763

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.67  E-value=8.2e-09  Score=71.41  Aligned_cols=33  Identities=21%  Similarity=0.240  Sum_probs=26.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      +++++|+||||||||||+++|++   +..|.+++++
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~   34 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEG   34 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcc
Confidence            35789999999999999999987   3445555554

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.62  E-value=1.1e-08  Score=81.37  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=33.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      ++.++|+|||||||||||++|+++++|+.|.+.+.+
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied  295 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED  295 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence            678999999999999999999999999988887765

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.61  E-value=2.2e-08  Score=70.03  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=23.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +++++|+|||||||||++++|++.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhh
Confidence            6899999999999999999999887

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.60  E-value=1.3e-08  Score=76.32  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh--------CCcccchhhhh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL--------GIQVKQVRANT   60 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~--------~~~~g~i~~~~   60 (159)
                      ++++|+|+|||||||||+.|.+..        .++.|++.+++
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg   47 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDD   47 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEE
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccH
Confidence            478999999999999999999986        67889988876

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.58  E-value=1.6e-08  Score=77.05  Aligned_cols=33  Identities=27%  Similarity=0.362  Sum_probs=28.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQ-VKQVR   57 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~   57 (159)
                      +++++|+|||||||||||++|.+++.+. .|.+.
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~  156 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL  156 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEE
Confidence            5799999999999999999999999887 45543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.57  E-value=1.4e-08  Score=73.64  Aligned_cols=33  Identities=12%  Similarity=0.194  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHH---HHhCCcccchh
Q psy17514         25 REFNAITGLNGTGKSNILDGIC---FVLGIQVKQVR   57 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~---~~~~~~~g~i~   57 (159)
                      +.+++|+|||||||||++++|+   |+..++.|.++
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~   62 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY   62 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence            5799999999999999999999   88888888887

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.56  E-value=3.7e-08  Score=68.80  Aligned_cols=30  Identities=20%  Similarity=0.212  Sum_probs=26.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVK   54 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g   54 (159)
                      +++++|+|||||||||++++|++.+.|+.|
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            679999999999999999999998866544

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.55  E-value=2.7e-08  Score=82.44  Aligned_cols=40  Identities=33%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             CeeeecCC--CCeEEEEcCCCCcHHHHHHHHHHHhC-Ccccch
Q psy17514         17 RVEINDFD--REFNAITGLNGTGKSNILDGICFVLG-IQVKQV   56 (159)
Q Consensus        17 ~~~l~~~~--~~~~~liG~NGaGKSTLl~~i~~~~~-~~~g~i   56 (159)
                      ..++.+++  +++++|+|||||||||||++|+|+.. +..|.+
T Consensus       566 ~~vl~disl~g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~  608 (765)
T 1ewq_A          566 EFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIALLAQVGSF  608 (765)
T ss_dssp             CCCCEEEEESSCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred             ceEeeeccCCCcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence            44555555  68999999999999999999999864 555654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.53  E-value=2.6e-08  Score=83.84  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=25.7

Q ss_pred             HHHHHHHHhcCccc----CCCeeEEe---Ch-hHhHhhcCCC
Q psy17514        124 KRVSDLFSSVNLNV----NNPHFLIM---QG-RVTKVLNMKP  157 (159)
Q Consensus       124 ~~~~~~l~~~~l~~----~~~~~l~~---q~-~ia~~l~~~p  157 (159)
                      .+..++|+.++|..    ..+.+||+   |+ +||++|+.+|
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p  824 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRD  824 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCC
Confidence            45667888999964    35668888   33 9999999877

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.53  E-value=4.8e-08  Score=83.21  Aligned_cols=45  Identities=29%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             EEEEeC-----e-eee-cCCeeeecCC------------CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514          5 SMVLDG-----F-KSY-GTRVEINDFD------------REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus         5 ~l~l~~-----~-~~~-~~~~~l~~~~------------~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .|++++     + +.| ++..++.+++            +++++|+|||||||||||++| |++.
T Consensus       750 ~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          750 FLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             eEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            378888     7 777 5555666554            379999999999999999999 8765

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.51  E-value=6.5e-09  Score=78.39  Aligned_cols=76  Identities=12%  Similarity=0.121  Sum_probs=48.3

Q ss_pred             EEEeCe-eeecCCeeeecCC------------CCeEEEEcCCCCcHHHHHHHHHHHh----CCcccchhhhhHHHHHHhh
Q psy17514          6 MVLDGF-KSYGTRVEINDFD------------REFNAITGLNGTGKSNILDGICFVL----GIQVKQVRANTLQELIYKN   68 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~------------~~~~~liG~NGaGKSTLl~~i~~~~----~~~~g~i~~~~~~~~~~~~   68 (159)
                      ++.++| ..|++..++.+++            .+.++|+||||+|||||+++|++.+    .+.+|.+...+ .++....
T Consensus        19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~-~~l~~~~   97 (334)
T 1in4_A           19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ-GDMAAIL   97 (334)
T ss_dssp             TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH-HHHHHHH
T ss_pred             cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH-HHHHHHH
Confidence            445566 5666554444433            1678999999999999999999998    56677776554 3332111


Q ss_pred             CCCceeEEEEEEEEEc
Q psy17514         69 GQAGVTKASVTLTFDN   84 (159)
Q Consensus        69 ~~~~~~~~~i~~v~q~   84 (159)
                      ..  ..+..|.++.|.
T Consensus        98 ~~--~~~~~v~~iDE~  111 (334)
T 1in4_A           98 TS--LERGDVLFIDEI  111 (334)
T ss_dssp             HH--CCTTCEEEEETG
T ss_pred             HH--ccCCCEEEEcch
Confidence            00  012357777765

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.50  E-value=4e-08  Score=72.67  Aligned_cols=32  Identities=25%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCccc-ch
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVK-QV   56 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i   56 (159)
                      +++++|+||||||||||++.|++...+..| .+
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v   67 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV   67 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCE
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence            689999999999999999999999987766 44

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.50  E-value=9.6e-08  Score=66.89  Aligned_cols=31  Identities=19%  Similarity=0.217  Sum_probs=26.0

Q ss_pred             eecCCCCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         20 INDFDREFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        20 l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +....+.+++|+||||||||||++.|....+
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3445689999999999999999999998865

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.49  E-value=7.3e-08  Score=67.85  Aligned_cols=27  Identities=15%  Similarity=0.234  Sum_probs=25.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.+++|+||||||||||++.|+..+++
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            789999999999999999999998865

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.47  E-value=4.9e-08  Score=69.14  Aligned_cols=34  Identities=24%  Similarity=-0.007  Sum_probs=28.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA   58 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~   58 (159)
                      +++++|+||||||||||++.|++...+..|.+.+
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~   56 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY   56 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            6899999999999999999999887666565544

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.46  E-value=5.3e-08  Score=68.17  Aligned_cols=32  Identities=28%  Similarity=0.331  Sum_probs=27.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQV   56 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i   56 (159)
                      +.+++|+|+|||||||++++|++.+.+..|.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v   53 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISV   53 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence            57899999999999999999999886655544

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.46  E-value=5.7e-08  Score=66.66  Aligned_cols=30  Identities=13%  Similarity=0.058  Sum_probs=27.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVK   54 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g   54 (159)
                      ++.++|+||||+|||||+++|++.+.+..|
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g   67 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKG   67 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence            688999999999999999999999876555

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.45  E-value=1.3e-07  Score=64.23  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=24.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.+++|+|+|||||||++++|++.+.+
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~   30 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNM   30 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            467899999999999999999998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.43  E-value=7.9e-08  Score=64.38  Aligned_cols=32  Identities=22%  Similarity=0.234  Sum_probs=27.7

Q ss_pred             eecCCCCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         20 INDFDREFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        20 l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +..+.++.++|+||||+|||||+++|++...+
T Consensus        31 l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           31 LRHKHGQFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             CCCCCCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             HHhcCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            44446789999999999999999999998865

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.39  E-value=7.5e-08  Score=69.89  Aligned_cols=47  Identities=13%  Similarity=0.200  Sum_probs=29.6

Q ss_pred             EEEEeCe--eee-cCCeeeecCC--------CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514          5 SMVLDGF--KSY-GTRVEINDFD--------REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus         5 ~l~l~~~--~~~-~~~~~l~~~~--------~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      .|+++|+  ++| ++..+|++++        +++++|+|++||||||+.++|+..+..
T Consensus        17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~   74 (250)
T 3nwj_A           17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY   74 (250)
T ss_dssp             ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4778886  567 5666777765        578999999999999999999986654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.39  E-value=1.9e-07  Score=70.09  Aligned_cols=24  Identities=25%  Similarity=0.227  Sum_probs=23.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+||||||||||+++|.+++.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            899999999999999999999987

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.39  E-value=1.2e-07  Score=75.89  Aligned_cols=36  Identities=25%  Similarity=0.159  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chh-hhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVK-QVR-ANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~-~~~   60 (159)
                      +++++|+|+||||||||+++|++.+.+..| .+. +++
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg  406 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG  406 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred             ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence            678999999999999999999999988775 564 555

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.37  E-value=1.4e-07  Score=65.37  Aligned_cols=25  Identities=28%  Similarity=0.179  Sum_probs=22.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      .++|+|+||||||||++.+++...+
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC
Confidence            4789999999999999999998754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.37  E-value=1.9e-07  Score=63.66  Aligned_cols=26  Identities=23%  Similarity=0.491  Sum_probs=23.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++++|+|+|||||||+.++|++.++
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~g   33 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQLH   33 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence            67899999999999999999998763

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.37  E-value=1.8e-07  Score=77.96  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=27.0

Q ss_pred             CeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         17 RVEINDFD----REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        17 ~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..++.+++    +++++|+|||||||||||++|+++.
T Consensus       595 ~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          595 PFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            34445544    6799999999999999999999975

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.36  E-value=7.7e-08  Score=68.76  Aligned_cols=24  Identities=25%  Similarity=0.167  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      +++++|+|+|||||||++++|++.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            789999999999999999999987

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.34  E-value=1.8e-07  Score=78.86  Aligned_cols=33  Identities=27%  Similarity=0.347  Sum_probs=26.5

Q ss_pred             CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         17 RVEINDFD-----REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        17 ~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..++.+++     +++++|+|||||||||||++|+++.
T Consensus       660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~  697 (918)
T 3thx_B          660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT  697 (918)
T ss_dssp             SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence            34555554     6899999999999999999997653

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.32  E-value=2.7e-07  Score=65.82  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=27.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH--HhCC-----cccchhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICF--VLGI-----QVKQVRAN   59 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~--~~~~-----~~g~i~~~   59 (159)
                      +++++|+||||||||||+..|++  ++++     ..+.+++.
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~   65 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID   65 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence            68999999999999999999999  4544     34455554

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.30  E-value=2.6e-07  Score=65.42  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=28.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh---CCcccchhh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL---GIQVKQVRA   58 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~---~~~~g~i~~   58 (159)
                      .+++|+||+||||||+.+.|++.+   .++.|.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~   41 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR   41 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence            478999999999999999999887   456777665

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.30  E-value=3.2e-07  Score=67.35  Aligned_cols=31  Identities=16%  Similarity=0.293  Sum_probs=25.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      ++|+||||||||||+++|++.+.+.  .+.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~--~i~i~g   77 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLN--FISVKG   77 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCE--EEEEET
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCC--EEEEEc
Confidence            8999999999999999999998763  444433

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.29  E-value=9.4e-08  Score=70.09  Aligned_cols=31  Identities=19%  Similarity=0.252  Sum_probs=26.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      ++|+||||+|||||+++|++.+.  .+.+.+.+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~  106 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR--VPFITASG  106 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred             EEEECCCcChHHHHHHHHHHHcC--CCEEEecH
Confidence            78999999999999999999876  55666555

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.25  E-value=4.5e-07  Score=68.82  Aligned_cols=36  Identities=14%  Similarity=0.303  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh--CCcc----cc-hhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL--GIQV----KQ-VRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~--~~~~----g~-i~~~~   60 (159)
                      ++++.|+||||||||||+..+++..  +|+.    |. +++++
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~  173 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT  173 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence            6799999999999999999999997  5555    45 55544

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.23  E-value=4.5e-07  Score=69.78  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH------------HhCCcccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICF------------VLGIQVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~------------~~~~~~g~i~~~~   60 (159)
                      +..++|+|+||||||||+++|++            ...|..|.+.+.+
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~   67 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   67 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence            57899999999999999999999            4456777776654

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.22  E-value=5.6e-07  Score=76.04  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +++++|+|||||||||+|++|++
T Consensus       662 g~i~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            58999999999999999999943

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.18  E-value=5.4e-07  Score=67.20  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA   58 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~   58 (159)
                      +++++|+|+|||||||++..|++.+.+..+.+.+
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~l  137 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL  137 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEE
Confidence            5799999999999999999999999877666544

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.18  E-value=8.4e-07  Score=65.87  Aligned_cols=30  Identities=17%  Similarity=0.356  Sum_probs=27.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVK   54 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g   54 (159)
                      +++++|+|+||+||||++..|++.+.++.|
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G  134 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKH  134 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999887555

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.16  E-value=3.6e-07  Score=76.37  Aligned_cols=42  Identities=24%  Similarity=0.523  Sum_probs=32.2

Q ss_pred             EEEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHH-HHHHhC
Q psy17514          5 SMVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNILDG-ICFVLG   50 (159)
Q Consensus         5 ~l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~-i~~~~~   50 (159)
                      .|+++|+..    .+|++++     |++++|+|+||||||||++. |++++.
T Consensus       502 ~L~v~~l~~----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~  549 (842)
T 2vf7_A          502 WLELNGVTR----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALA  549 (842)
T ss_dssp             EEEEEEEEE----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred             eEEEEeeee----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHH
Confidence            367777722    1356665     79999999999999999997 787763

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=1.6e-06  Score=60.42  Aligned_cols=33  Identities=18%  Similarity=0.216  Sum_probs=23.7

Q ss_pred             eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         19 EINDFD-----REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        19 ~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      ++++++     +.+++|+|++||||||+.+.|+..+..
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~   51 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNV   51 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            445555     468999999999999999999977643

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.15  E-value=1.1e-06  Score=66.28  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=26.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH-HhCCcccchhhhh
Q psy17514         28 NAITGLNGTGKSNILDGICF-VLGIQVKQVRANT   60 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~-~~~~~~g~i~~~~   60 (159)
                      +.|+||||+||||++++|++ +.++..|.+.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~   72 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV   72 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecc
Confidence            88999999999999999999 7788888887766

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.13  E-value=1.7e-06  Score=62.35  Aligned_cols=46  Identities=13%  Similarity=0.144  Sum_probs=32.2

Q ss_pred             eecCCeeeecCCCC---eEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         13 SYGTRVEINDFDRE---FNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        13 ~~~~~~~l~~~~~~---~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      .|....++.+++..   -++|+||||+|||||+++|++.+.  .+.+.+.+
T Consensus        34 ~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~   82 (254)
T 1ixz_A           34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASG   82 (254)
T ss_dssp             HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred             HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence            34443444554422   278999999999999999999876  45565554

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.12  E-value=1.5e-06  Score=60.34  Aligned_cols=23  Identities=30%  Similarity=0.283  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++|+|+||||||||++.+++...
T Consensus         8 v~lvG~~g~GKSTLl~~l~~~~~   30 (199)
T 2f9l_A            8 VVLIGDSGVGKSNLLSRFTRNEF   30 (199)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            68999999999999999998753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.11  E-value=1.1e-06  Score=66.66  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=26.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQV   56 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i   56 (159)
                      +.+++|+|++|||||||+++|.+.+.+..+.+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v  105 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL  105 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence            56889999999999999999999876654443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.07  E-value=2.4e-06  Score=62.58  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=23.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++++|+||||||||||+..+++...
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            78999999999999999999998654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.04  E-value=2.1e-06  Score=59.91  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +++|+|+|||||||+.+.|++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999987

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.02  E-value=3.1e-06  Score=58.93  Aligned_cols=21  Identities=29%  Similarity=0.214  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +++|+|+|||||||+.+.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            579999999999999999998

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.01  E-value=3.6e-06  Score=59.00  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +++++|+||||||||||+..|++
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999999998

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.00  E-value=2e-06  Score=63.79  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514         24 DREFNAITGLNGTGKSNILDGICFVLGIQVKQVRA   58 (159)
Q Consensus        24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~   58 (159)
                      .+++++|+|+||+||||++..|++.+.+..|.+.+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l  131 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL  131 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            36799999999999999999999999877666544

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.99  E-value=3.3e-06  Score=67.64  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      +..++|+||||+|||||+++|++.+.+..+.+...+
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~  143 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG  143 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence            678999999999999999999999988777776655

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.99  E-value=4.6e-06  Score=63.89  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=23.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++++|+||||||||||+++|++...
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~~~~  194 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLELCG  194 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            67999999999999999999998764

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.98  E-value=2.7e-06  Score=65.71  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=22.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHH--HHHhCCc
Q psy17514         25 REFNAITGLNGTGKSNILDGI--CFVLGIQ   52 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i--~~~~~~~   52 (159)
                      ++++.|+||||||||||+..|  .++++++
T Consensus       178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~  207 (400)
T 3lda_A          178 GSITELFGEFRTGKSQLCHTLAVTCQIPLD  207 (400)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGG
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhccCcc
Confidence            689999999999999999955  4555543

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.97  E-value=4.5e-06  Score=56.97  Aligned_cols=26  Identities=27%  Similarity=0.230  Sum_probs=23.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.+++|+|++||||||+.++|+..+.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            67889999999999999999998763

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.97  E-value=3.8e-06  Score=66.96  Aligned_cols=28  Identities=21%  Similarity=0.211  Sum_probs=25.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      +++++|+||||||||||++.+++...+.
T Consensus       281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~  308 (525)
T 1tf7_A          281 DSIILATGATGTGKTLLVSRFVENACAN  308 (525)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            6899999999999999999999987664

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.97  E-value=2.9e-06  Score=59.29  Aligned_cols=25  Identities=20%  Similarity=0.325  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +.+++|+|++||||||+.+.|++.+
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            5789999999999999999999875

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.96  E-value=3e-06  Score=63.56  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN   59 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~   59 (159)
                      +++++|+|+||+||||++..|++.+.+..+.+.+.
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli  139 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA  139 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            57899999999999999999999998777766553

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.95  E-value=5.7e-06  Score=57.77  Aligned_cols=27  Identities=15%  Similarity=0.218  Sum_probs=23.8

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         24 DREFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        24 ~~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .+.+++|+||+||||||+.+.|...++
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            367899999999999999999987764

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.95  E-value=2.1e-06  Score=72.49  Aligned_cols=38  Identities=24%  Similarity=0.511  Sum_probs=28.4

Q ss_pred             EEEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHH
Q psy17514          5 SMVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus         5 ~l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~   46 (159)
                      .|+++++..    ..|++++     |++++|+|+||||||||+++|.
T Consensus       629 ~L~v~~l~~----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          629 WLEVVGARE----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             EEEEEEECS----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             EEEEecCcc----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            366666621    2355555     7999999999999999999853

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.94  E-value=3.4e-06  Score=59.24  Aligned_cols=30  Identities=23%  Similarity=0.168  Sum_probs=25.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVK   54 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g   54 (159)
                      +.+++|+|++||||||+.+.|+..+.+..|
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g   54 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLVRDRR   54 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence            678999999999999999999988774444

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.93  E-value=6.1e-06  Score=57.41  Aligned_cols=26  Identities=27%  Similarity=0.428  Sum_probs=23.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..+++|+|++||||||+.+.|+..++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999988764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.92  E-value=4.1e-06  Score=61.96  Aligned_cols=27  Identities=30%  Similarity=0.143  Sum_probs=24.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.+++|+|++|||||||.+.|..++.+
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            568999999999999999999998865

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.90  E-value=1.7e-06  Score=67.03  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=22.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++.++|+|+|||||||||++|++..
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCC
Confidence            4678999999999999999998874

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.87  E-value=5.8e-06  Score=62.43  Aligned_cols=29  Identities=28%  Similarity=0.313  Sum_probs=25.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQV   53 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~   53 (159)
                      +.+++|+|++|+|||||++.|++.+.+..
T Consensus        56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~   84 (341)
T 2p67_A           56 TLRLGVTGTPGAGKSTFLEAFGMLLIREG   84 (341)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence            56899999999999999999998875443

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.86  E-value=6.1e-06  Score=56.67  Aligned_cols=31  Identities=26%  Similarity=0.288  Sum_probs=26.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQ   55 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~   55 (159)
                      +.+++|+|++||||||+.+.|+..+....+.
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~   43 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYR   43 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence            6788999999999999999999887654333

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.84  E-value=2.9e-06  Score=68.71  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=26.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQV   53 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~   53 (159)
                      ++.++|+||||+|||||+++|++++.+..
T Consensus        60 g~~vll~Gp~GtGKTtlar~ia~~l~~~~   88 (604)
T 3k1j_A           60 KRHVLLIGEPGTGKSMLGQAMAELLPTET   88 (604)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence            57899999999999999999999998764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.83  E-value=1.3e-05  Score=55.00  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .+++|+|++|||||||++.|...+.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            5789999999999999999988754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.82  E-value=7.9e-06  Score=54.88  Aligned_cols=23  Identities=26%  Similarity=0.210  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .++|+|++|+|||||++.+.+..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998643

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.81  E-value=3.3e-06  Score=63.52  Aligned_cols=28  Identities=18%  Similarity=0.188  Sum_probs=24.0

Q ss_pred             CCe--EEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         25 REF--NAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        25 ~~~--~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      +++  +.|+||+|+||||+++++++.+.+.
T Consensus        44 g~~~~~ll~Gp~G~GKTtla~~la~~l~~~   73 (340)
T 1sxj_C           44 GKLPHLLFYGPPGTGKTSTIVALAREIYGK   73 (340)
T ss_dssp             TCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            445  8999999999999999999987544

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.80  E-value=1.5e-05  Score=53.65  Aligned_cols=25  Identities=16%  Similarity=0.085  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +++|+|++||||||+.+.|+..+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~   27 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKY   27 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6789999999999999999877643

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.78  E-value=1.7e-06  Score=65.94  Aligned_cols=44  Identities=14%  Similarity=0.258  Sum_probs=29.5

Q ss_pred             EEEEeCe-eeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514          5 SMVLDGF-KSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .+.+.++ +.|..+.+..+++.. ++|+|++|+|||||++.|.+..
T Consensus        17 ~v~~~~l~~~~~~k~~~~~~~~~-I~vvG~~g~GKSTLln~L~~~~   61 (361)
T 2qag_A           17 YVGFANLPNQVHRKSVKKGFEFT-LMVVGESGLGKSTLINSLFLTD   61 (361)
T ss_dssp             ----CCHHHHHHTHHHHHCCEEC-EEECCCTTSCHHHHHHHHTTCC
T ss_pred             eEEeccchHHhCCeeecCCCCEE-EEEEcCCCCCHHHHHHHHhCCC
Confidence            3566777 666665555544333 4899999999999999987653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.76  E-value=1.4e-05  Score=55.36  Aligned_cols=22  Identities=36%  Similarity=0.452  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++|+||+|||||||++.|.--
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3689999999999999998644

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.74  E-value=1.4e-05  Score=54.46  Aligned_cols=22  Identities=27%  Similarity=0.265  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++|+|++|+|||||++.+++.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.73  E-value=1.5e-05  Score=54.03  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..++|+|++|+|||||++.+++..
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            457999999999999999998753

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.71  E-value=1.5e-05  Score=59.11  Aligned_cols=25  Identities=32%  Similarity=0.327  Sum_probs=22.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..+++|+|++|+|||||+++|.+..
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Confidence            4578999999999999999998753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.70  E-value=1.8e-05  Score=56.37  Aligned_cols=25  Identities=28%  Similarity=0.294  Sum_probs=20.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHH-HHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGI-CFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i-~~~~   49 (159)
                      +++++|+||||+|||||+..+ ..+.
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~~~   48 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWNGL   48 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999996555 4443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.70  E-value=2.6e-05  Score=55.62  Aligned_cols=27  Identities=22%  Similarity=0.458  Sum_probs=24.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.+++|.|++||||||+++.|+..+..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            568899999999999999999988764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.70  E-value=1.4e-05  Score=62.29  Aligned_cols=24  Identities=29%  Similarity=0.261  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -++|+|+||+|||||++.|.+...
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~  205 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKER  205 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcc
Confidence            578999999999999999998753

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.69  E-value=1.2e-05  Score=61.22  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .++|+|++|||||||+++|++..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            48999999999999999998754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.66  E-value=3.6e-05  Score=52.18  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.++.|+|++||||||+.+.|+-.++
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35789999999999999999987664

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.66  E-value=2.5e-05  Score=59.25  Aligned_cols=37  Identities=22%  Similarity=0.158  Sum_probs=25.6

Q ss_pred             eeeecCC--CCeEEEEcCCCCcHHHHHHHHHHH--hCCccc
Q psy17514         18 VEINDFD--REFNAITGLNGTGKSNILDGICFV--LGIQVK   54 (159)
Q Consensus        18 ~~l~~~~--~~~~~liG~NGaGKSTLl~~i~~~--~~~~~g   54 (159)
                      .+|.+++  .-.++|+|++||||||||++|.|.  ++...|
T Consensus        25 ~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~   65 (360)
T 3t34_A           25 SALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG   65 (360)
T ss_dssp             CCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSS
T ss_pred             cccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCC
Confidence            3455554  347899999999999999999994  344444

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.66  E-value=1.5e-05  Score=54.40  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|++|+|||||++.+++.
T Consensus         5 v~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999874

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.65  E-value=3.9e-05  Score=54.74  Aligned_cols=26  Identities=31%  Similarity=0.275  Sum_probs=23.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.+++|+|++||||||+.+.|+..++
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~lg   41 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDFG   41 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            67899999999999999999998654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.65  E-value=3.4e-05  Score=55.82  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+||+|||||||-+.|+.-+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC
Confidence            578999999999999999987654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.64  E-value=3.6e-05  Score=52.22  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .++|+|++||||||+.+.|+..+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            578999999999999999987654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.62  E-value=4e-05  Score=52.94  Aligned_cols=23  Identities=43%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +++|+|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            57899999999999999999854

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.62  E-value=3.1e-05  Score=51.95  Aligned_cols=19  Identities=37%  Similarity=0.541  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCcHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGI   45 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i   45 (159)
                      +++|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6789999999999999999

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.61  E-value=3.8e-05  Score=55.30  Aligned_cols=24  Identities=25%  Similarity=0.174  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -+.|+||+|+|||||+++|++.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcC
Confidence            478999999999999999998875

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.60  E-value=1.9e-05  Score=55.12  Aligned_cols=24  Identities=25%  Similarity=0.534  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|.|++||||||+++.|...+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999987764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.60  E-value=4.6e-05  Score=51.93  Aligned_cols=25  Identities=12%  Similarity=0.246  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .+++|+|++|||||||+..|...+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4689999999999999999987764

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.59  E-value=2.6e-05  Score=59.27  Aligned_cols=31  Identities=13%  Similarity=-0.014  Sum_probs=25.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQ   55 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~   55 (159)
                      ++++.|+||+|+|||||+..++....+..|.
T Consensus        61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~   91 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGV   91 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCe
Confidence            4689999999999999999998876554443

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.59  E-value=3.7e-05  Score=52.49  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +.+++|+|++||||||+.+.|+-.+
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999998544

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.58  E-value=3.1e-05  Score=60.15  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=29.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514         24 DREFNAITGLNGTGKSNILDGICFVLGIQVKQVRA   58 (159)
Q Consensus        24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~   58 (159)
                      .+.+++++|+||+||||++..|++.+.+..+.+.+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll  131 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL  131 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            36789999999999999999999999876555433

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.57  E-value=3.3e-05  Score=55.09  Aligned_cols=25  Identities=24%  Similarity=0.126  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      -++|+|++|+|||||+++|.+....
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~   55 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVF   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcC
Confidence            3689999999999999999976543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.56  E-value=5.3e-05  Score=54.25  Aligned_cols=25  Identities=40%  Similarity=0.597  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -+++|+||+||||||+.+.|+..+.
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4789999999999999999986654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.56  E-value=2.5e-05  Score=57.97  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=27.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQV   56 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i   56 (159)
                      +.+++++|+||+||||++..|++.+.+..+.+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v  129 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV  129 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            56899999999999999999999886654444

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.55  E-value=4.7e-05  Score=53.50  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      -+++|+|++||||||+.+.|+.
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999987

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.53  E-value=5.2e-05  Score=51.30  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +++|+|++||||||+.+.|+-
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            678999999999999999986

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.53  E-value=5.9e-05  Score=51.53  Aligned_cols=26  Identities=19%  Similarity=0.195  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +-+++|.|++||||||+.+.|+-.+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34789999999999999999976443

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.52  E-value=3.2e-05  Score=59.50  Aligned_cols=24  Identities=25%  Similarity=0.253  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      +..++|+|+||+|||||+++|++.
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            456899999999999999999987

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.51  E-value=4.2e-05  Score=55.71  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .++|+|++|||||||+++|++...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            368999999999999999987643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.49  E-value=4.5e-05  Score=55.06  Aligned_cols=26  Identities=19%  Similarity=0.070  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.++.|+|++||||||+.+.|+..+.
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56789999999999999999988764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.47  E-value=8.8e-05  Score=51.39  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+|++||||||+.+.|+..++
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            689999999999999999988665

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.46  E-value=7.1e-05  Score=51.28  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.+++|+|++||||||+.+.|+-.+.
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l~   30 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGLR   30 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            34789999999999999999976543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.46  E-value=7.3e-05  Score=51.08  Aligned_cols=24  Identities=33%  Similarity=0.599  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+|+.||||||+.+.|+-.+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999976554

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.45  E-value=8.3e-05  Score=50.59  Aligned_cols=26  Identities=23%  Similarity=0.254  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.+++|+|++||||||+.+.|+-.+.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999985543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.44  E-value=6.4e-05  Score=55.40  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +.++.|+||+||||||+.+.|.--+
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999997544

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.44  E-value=8.9e-05  Score=50.82  Aligned_cols=24  Identities=33%  Similarity=0.310  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      +..++|+|++||||||+.+.|+-.
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            567899999999999999999876

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.43  E-value=6.6e-05  Score=57.52  Aligned_cols=34  Identities=21%  Similarity=0.043  Sum_probs=26.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA   58 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~   58 (159)
                      ...++|+|++||||||+++.|........+.+.+
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~   68 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII   68 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence            4567999999999999999998876555555443

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.43  E-value=8.2e-05  Score=51.36  Aligned_cols=24  Identities=29%  Similarity=0.216  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ..+++|+|++||||||+.+.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            347899999999999999999864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.42  E-value=0.00013  Score=49.76  Aligned_cols=26  Identities=19%  Similarity=0.222  Sum_probs=22.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ...++|+|++||||||+.+.|+-.+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34678999999999999999986654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.41  E-value=4.7e-05  Score=59.27  Aligned_cols=32  Identities=16%  Similarity=0.293  Sum_probs=26.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQV   56 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i   56 (159)
                      +.+++++|++|+||||++..|+..+....+.+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV  128 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV  128 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            56899999999999999999998886554443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.41  E-value=9.3e-05  Score=50.54  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.40  E-value=9.1e-05  Score=58.70  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.|+||||+|||||+++|++...
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999999875

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.34  E-value=0.00013  Score=48.41  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         8 i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            8 MVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            589999999999999999864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.34  E-value=0.00011  Score=50.82  Aligned_cols=27  Identities=26%  Similarity=0.268  Sum_probs=23.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      ..+.|.||+|+|||||+++|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            567899999999999999998876543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.32  E-value=0.00014  Score=53.64  Aligned_cols=29  Identities=17%  Similarity=0.137  Sum_probs=24.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGIQVK   54 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~~~g   54 (159)
                      ..+.|+||+|+||||+.++|+..+....+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~   76 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEE   76 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence            46889999999999999999998755433

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.32  E-value=0.00014  Score=47.95  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++++|+.|+|||||++.+.+-.
T Consensus         6 i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            6 LVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            6899999999999999998643

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.32  E-value=0.00015  Score=50.14  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +-+++|+|+.||||||+.+.|+-.+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999998654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.32  E-value=0.00014  Score=47.88  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            4 VVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            589999999999999999864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.30  E-value=0.00015  Score=47.89  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         6 i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999998764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.30  E-value=0.00017  Score=54.76  Aligned_cols=26  Identities=27%  Similarity=0.528  Sum_probs=22.6

Q ss_pred             CCe--EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REF--NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~--~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++.  ++|+|++||||||+.++|+..+.
T Consensus        22 g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           22 NYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            445  88999999999999999998764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.30  E-value=0.00015  Score=48.11  Aligned_cols=21  Identities=29%  Similarity=0.249  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHhC
Confidence            589999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.29  E-value=0.00016  Score=48.14  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus         9 i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            9 VVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            5899999999999999998653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.29  E-value=0.00015  Score=49.70  Aligned_cols=21  Identities=24%  Similarity=0.294  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      -++|+|++|+|||||++.+.+
T Consensus        25 ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999986

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.29  E-value=0.00016  Score=47.82  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         7 i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            589999999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.29  E-value=0.00016  Score=48.06  Aligned_cols=22  Identities=27%  Similarity=0.231  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            9 VCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            5899999999999999998654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.28  E-value=0.00016  Score=47.91  Aligned_cols=22  Identities=23%  Similarity=0.128  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999997643

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.28  E-value=0.00016  Score=49.46  Aligned_cols=25  Identities=24%  Similarity=0.190  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -+++|+|+.||||||+.+.|+-.+.
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999998875443

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.28  E-value=0.00016  Score=48.55  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        11 i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           11 VIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            6899999999999999988643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.28  E-value=0.00011  Score=53.81  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++|+|++|+|||||++.+++.
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3689999999999999999875

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.28  E-value=0.00021  Score=49.55  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      -+++|.|+.||||||+.+.|+-.+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            46899999999999999999876543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.27  E-value=0.0002  Score=52.88  Aligned_cols=26  Identities=19%  Similarity=0.116  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +..+.|+||+|+|||||.++|+..+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCcCHHHHHHHHHHHhC
Confidence            45688999999999999999998765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.27  E-value=0.0002  Score=49.05  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=22.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +-+++|+|+.||||||+.+.|+-.+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999986543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.27  E-value=0.00017  Score=48.35  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        10 i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A           10 VILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            589999999999999999764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.27  E-value=0.00017  Score=47.69  Aligned_cols=21  Identities=24%  Similarity=0.237  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            589999999999999999863

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.26  E-value=0.00018  Score=49.97  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      +-+++|+|+.||||||+.+.|+-.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            567899999999999999999754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.26  E-value=0.00017  Score=48.37  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        12 i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           12 LVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.26  E-value=0.00021  Score=48.05  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+|+.||||||+.+.|+-.+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999986544

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.25  E-value=0.00022  Score=58.45  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=26.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC--cccch
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI--QVKQV   56 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~--~~g~i   56 (159)
                      +..++|+|++|+|||||++.|.+...+  ..|++
T Consensus         9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V   42 (665)
T 2dy1_A            9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV   42 (665)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred             CcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence            457899999999999999999988765  45665

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.25  E-value=0.00024  Score=53.77  Aligned_cols=26  Identities=23%  Similarity=0.240  Sum_probs=23.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      .+.|+||+|+|||||+++++..+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            78999999999999999999887543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.24  E-value=0.00015  Score=48.17  Aligned_cols=20  Identities=30%  Similarity=0.396  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+.+
T Consensus         6 i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            6 VAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            58999999999999999976

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.24  E-value=0.00014  Score=48.69  Aligned_cols=21  Identities=19%  Similarity=0.195  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         7 i~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            7 VVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCccHHHHHHHHhcC
Confidence            689999999999999998753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.23  E-value=0.00019  Score=49.02  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +++|+|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999997654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.23  E-value=0.0002  Score=48.94  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        28 i~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           28 VVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            6899999999999999998743

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.23  E-value=0.00021  Score=47.42  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         9 i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            589999999999999999863

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.22  E-value=0.0002  Score=50.08  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .++|+|+.||||||+.+.|+--+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            368999999999999999965443

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.22  E-value=0.00021  Score=47.51  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        10 i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A           10 ILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.22  E-value=0.00018  Score=48.89  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|++|+|||||++.+.+-
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.21  E-value=0.00016  Score=49.42  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      --++|+|+.|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999999753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.21  E-value=0.00023  Score=49.53  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      +-+++|+|+.||||||+.+.|+-.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.21  E-value=0.00021  Score=48.43  Aligned_cols=21  Identities=24%  Similarity=0.164  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        14 i~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           14 FLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            589999999999999999864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.21  E-value=0.00021  Score=48.30  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus         7 i~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            7 LVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            5899999999999999998643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.21  E-value=0.00016  Score=49.18  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            57899999999999999997653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.21  E-value=0.00026  Score=48.61  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +-+++|+|+.||||||+.+.|+-.+.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999986554

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.20  E-value=0.00017  Score=48.33  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -.++|+|+.|+|||||++.+.+-
T Consensus         9 ~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999999764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.20  E-value=0.00021  Score=50.54  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +-+++|+|+.||||||+.+.|+--+
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3578999999999999999998544

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.20  E-value=0.00022  Score=47.72  Aligned_cols=21  Identities=14%  Similarity=0.332  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        17 i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           17 LVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.20  E-value=0.00029  Score=49.59  Aligned_cols=26  Identities=12%  Similarity=0.236  Sum_probs=22.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +..+.|.||+|+|||||+++++..+.
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999987654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.20  E-value=0.00022  Score=48.67  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        10 i~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A           10 TVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            6899999999999999998763

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.19  E-value=0.00025  Score=49.85  Aligned_cols=25  Identities=20%  Similarity=0.068  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -+++|+|+.||||||+.+.|+--+.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999986554

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.19  E-value=0.00028  Score=48.09  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .+++|+|+.||||||+.+.|+-.+.
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999976543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.19  E-value=0.00023  Score=48.46  Aligned_cols=23  Identities=22%  Similarity=0.078  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++|+|+.|+|||||++.+.+...
T Consensus        17 i~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           17 IVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHHhhcc
Confidence            58999999999999998887543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.19  E-value=0.00018  Score=54.49  Aligned_cols=25  Identities=16%  Similarity=0.105  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++++.|.||+|+|||||+..++...
T Consensus        61 G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           61 GRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999987776543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.19  E-value=0.00017  Score=48.02  Aligned_cols=20  Identities=25%  Similarity=0.303  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+.+
T Consensus         5 i~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            58999999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.19  E-value=0.00024  Score=46.99  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            5899999999999999997643

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.19  E-value=0.00025  Score=53.41  Aligned_cols=26  Identities=31%  Similarity=0.322  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +..+.|+||+|+|||||++.++..+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            56889999999999999999988763

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.17  E-value=0.00025  Score=48.28  Aligned_cols=22  Identities=23%  Similarity=0.223  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++++|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4689999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.17  E-value=0.00025  Score=47.82  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            3689999999999999999864

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.17  E-value=0.00019  Score=54.67  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++|+|.+|+|||||+++|++.
T Consensus         4 kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            4 KCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999999983

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.17  E-value=0.00025  Score=47.61  Aligned_cols=22  Identities=23%  Similarity=0.178  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        13 i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           13 VMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHhCC
Confidence            5899999999999999997654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.17  E-value=0.00017  Score=48.88  Aligned_cols=21  Identities=19%  Similarity=0.214  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            589999999999999998764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.17  E-value=0.00018  Score=49.72  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      -++|+|++|+|||||++.+.+
T Consensus        27 ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           27 KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEETTSSHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.17  E-value=0.00025  Score=49.09  Aligned_cols=25  Identities=16%  Similarity=0.122  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..+++|+|+.||||||+.+.|+-.+
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3578999999999999999987544

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.16  E-value=0.00024  Score=49.63  Aligned_cols=23  Identities=26%  Similarity=0.257  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .++|+|+.||||||+.+.|+--+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36899999999999999996544

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.16  E-value=0.00032  Score=46.90  Aligned_cols=24  Identities=21%  Similarity=0.145  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .++|+|+.||||||+.+.|+-.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999987543

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.16  E-value=0.00023  Score=48.33  Aligned_cols=26  Identities=23%  Similarity=0.184  Sum_probs=17.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.+++|+|++||||||+.+.|+-.+.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45789999999999999999975543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.16  E-value=0.00018  Score=53.43  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++++|+|+.|+|||||++.|.+-
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            478999999999999999999874

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.16  E-value=0.00027  Score=47.34  Aligned_cols=22  Identities=32%  Similarity=0.265  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           18 YIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999998654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.15  E-value=0.00026  Score=47.85  Aligned_cols=22  Identities=32%  Similarity=0.293  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        13 i~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           13 FLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            5899999999999999997643

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.15  E-value=0.00025  Score=54.15  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|++|+|||||+++|++..
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999874

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.15  E-value=0.00023  Score=47.15  Aligned_cols=20  Identities=25%  Similarity=0.194  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+.+
T Consensus         5 i~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            58999999999999998853

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.15  E-value=0.00021  Score=52.99  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ..++|+|++|+|||||++.+.+-
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.15  E-value=0.00026  Score=49.31  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.15  E-value=0.00027  Score=48.18  Aligned_cols=22  Identities=23%  Similarity=0.146  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|++|+|||||++.+.+-
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999877654

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.14  E-value=0.00043  Score=54.98  Aligned_cols=30  Identities=17%  Similarity=0.293  Sum_probs=23.2

Q ss_pred             eeeecCC-CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514         18 VEINDFD-REFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        18 ~~l~~~~-~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++..++. +....|.|++||||||+|++|..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence            3333443 46789999999999999999865

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.14  E-value=0.00014  Score=55.07  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .-.++|+|++|+|||||++.+++..
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999998654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.13  E-value=0.00016  Score=48.81  Aligned_cols=20  Identities=40%  Similarity=0.532  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~   46 (159)
                      -++|+|++|+|||||++.+.
T Consensus        20 ~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           20 RILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            46899999999999999886

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.13  E-value=0.00029  Score=47.38  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        15 i~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           15 LVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            689999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.13  E-value=0.00028  Score=47.86  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        10 i~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A           10 IVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            589999999999999999864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.13  E-value=0.00034  Score=47.62  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+|+.||||||+-+.|+-.+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            578999999999999999976543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.13  E-value=0.00024  Score=47.60  Aligned_cols=21  Identities=14%  Similarity=0.205  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         9 i~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            9 IVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEECcCCCCHHHHHHHHHhC
Confidence            689999999999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.13  E-value=0.00029  Score=48.43  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999998764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.12  E-value=0.00028  Score=49.85  Aligned_cols=23  Identities=26%  Similarity=0.107  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +++|+|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.12  E-value=0.0003  Score=51.53  Aligned_cols=26  Identities=15%  Similarity=0.140  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..-+.|.||+|+||||+.++++..+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            45678999999999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.12  E-value=0.0003  Score=48.15  Aligned_cols=22  Identities=27%  Similarity=0.268  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        26 i~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           26 VCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            6899999999999999998643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.12  E-value=0.0003  Score=47.86  Aligned_cols=22  Identities=18%  Similarity=0.076  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        25 i~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           25 LLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999998653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.11  E-value=0.0003  Score=48.09  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        11 i~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           11 VVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCcHHHHHHHHHcC
Confidence            689999999999999999873

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.11  E-value=0.0003  Score=48.44  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        11 i~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           11 VIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            6899999999999999998653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.11  E-value=0.00027  Score=47.39  Aligned_cols=20  Identities=35%  Similarity=0.351  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+.+
T Consensus        12 i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           12 LLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEECCTTSCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            58999999999999999864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.11  E-value=0.00031  Score=47.87  Aligned_cols=22  Identities=27%  Similarity=0.197  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        19 i~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           19 LLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            6899999999999999998643

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.11  E-value=0.0003  Score=48.63  Aligned_cols=26  Identities=23%  Similarity=0.207  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +-+++|+|+.||||||+.+.|+-.+.
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999986543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.10  E-value=0.00034  Score=51.99  Aligned_cols=25  Identities=28%  Similarity=0.217  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..+.|.||+|+|||||+++|+..+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHH
Confidence            4688999999999999999998763

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.10  E-value=0.00024  Score=51.43  Aligned_cols=22  Identities=14%  Similarity=0.332  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++|+|..|||||||++.+.|.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3689999999999999999875

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.09  E-value=0.00038  Score=49.48  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~   46 (159)
                      ++.+++.||+||||||++..+.
T Consensus        76 g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHhHHHHH
Confidence            6889999999999999887664

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.09  E-value=0.00034  Score=47.23  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        21 i~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           21 LVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            589999999999999999854

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.09  E-value=0.00033  Score=48.12  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|++|+|||||++.+.+.
T Consensus         9 v~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            9 VVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.08  E-value=0.00031  Score=50.80  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .+++|+|++||||||+.+.|+-.
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            46889999999999999999865

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.08  E-value=0.0004  Score=49.95  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -+++|+|+.||||||+-+.|+-.+.
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3689999999999999999987544

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.08  E-value=0.00034  Score=48.53  Aligned_cols=24  Identities=29%  Similarity=0.275  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -+++|+|+.||||||+.+.|.-.+
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            467999999999999999998663

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.08  E-value=0.00034  Score=48.22  Aligned_cols=22  Identities=18%  Similarity=0.149  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        27 i~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           27 VVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999998754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.08  E-value=0.00035  Score=47.11  Aligned_cols=21  Identities=19%  Similarity=0.196  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         8 i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            8 CVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            589999999999999998754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.08  E-value=0.00032  Score=54.68  Aligned_cols=24  Identities=29%  Similarity=0.271  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..+.|.||+|+|||||+++|+..+
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999876

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.07  E-value=0.00034  Score=48.51  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        29 i~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           29 IVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHHhCC
Confidence            6899999999999999987643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.07  E-value=0.00036  Score=48.75  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -.++|+|+.|+|||||++.+..-.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            467899999999999999998764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.07  E-value=0.00026  Score=50.95  Aligned_cols=22  Identities=32%  Similarity=0.256  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++|+|+.|+|||||++.|.+-
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.07  E-value=0.00036  Score=47.01  Aligned_cols=21  Identities=29%  Similarity=0.208  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         9 i~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            9 IAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            689999999999999998743

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.07  E-value=0.00036  Score=47.51  Aligned_cols=21  Identities=19%  Similarity=0.270  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        23 i~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           23 IIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999998764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.06  E-value=0.00037  Score=47.59  Aligned_cols=21  Identities=33%  Similarity=0.275  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        24 i~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           24 YIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            689999999999999999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.05  E-value=0.00019  Score=52.33  Aligned_cols=20  Identities=25%  Similarity=0.569  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|++|+|||||+++|.+
T Consensus        11 I~vvG~~g~GKSTLin~L~~   30 (274)
T 3t5d_A           11 LMVVGESGLGKSTLINSLFL   30 (274)
T ss_dssp             EEEEECTTSSHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.05  E-value=0.00038  Score=47.54  Aligned_cols=22  Identities=23%  Similarity=0.107  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        26 i~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            6899999999999999998765

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.05  E-value=0.00034  Score=51.28  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      -+++|+|+.||||||+.+.|.-
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999873

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.05  E-value=0.00038  Score=48.07  Aligned_cols=22  Identities=27%  Similarity=0.206  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        11 i~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           11 LLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999998643

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.04  E-value=0.00021  Score=52.78  Aligned_cols=25  Identities=20%  Similarity=0.348  Sum_probs=18.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -+++|.|++||||||+.+.|.-.++
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3689999999999999999876543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.03  E-value=0.00053  Score=46.22  Aligned_cols=25  Identities=24%  Similarity=0.521  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ...+.|+||.|+||||+++.++..+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999998765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.03  E-value=0.00042  Score=46.61  Aligned_cols=21  Identities=19%  Similarity=0.128  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        11 i~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           11 CVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.03  E-value=0.00041  Score=47.26  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        25 i~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           25 LTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999998643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.03  E-value=0.00041  Score=47.39  Aligned_cols=23  Identities=17%  Similarity=0.076  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            36899999999999999998753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.03  E-value=0.0005  Score=48.27  Aligned_cols=25  Identities=16%  Similarity=0.098  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -+++|+|+.||||||+.+.|+-.+.
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4678999999999999999976554

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.02  E-value=0.00041  Score=47.98  Aligned_cols=23  Identities=26%  Similarity=0.150  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            36899999999999999998643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.02  E-value=0.00042  Score=47.67  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.|+|||||++.+.+-
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            3689999999999999999764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.02  E-value=0.00042  Score=47.51  Aligned_cols=21  Identities=33%  Similarity=0.317  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        31 i~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           31 LAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.02  E-value=0.00042  Score=47.10  Aligned_cols=23  Identities=30%  Similarity=0.203  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            36899999999999999998653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.01  E-value=0.00037  Score=54.92  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.|+||+|+|||||+++|++...
T Consensus        52 vLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           52 ILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            67999999999999999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.01  E-value=0.00032  Score=51.23  Aligned_cols=23  Identities=13%  Similarity=0.205  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .++|+|..|||||||++++.+..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.01  E-value=0.0004  Score=51.03  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++.|+|++||||||+.+.|+-
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999985

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.01  E-value=0.00033  Score=50.73  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+++..
T Consensus         8 I~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            8 VALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            6899999999999999998743

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.01  E-value=0.00044  Score=48.30  Aligned_cols=26  Identities=31%  Similarity=0.176  Sum_probs=21.5

Q ss_pred             cCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy17514         22 DFDREFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        22 ~~~~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      .+.+..++|+||+|+|||||...|.-
T Consensus        31 ~~~g~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           31 DIYGLGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             EETTEEEEEECCCTTTTHHHHHHHHT
T ss_pred             EECCEEEEEECCCCCCHHHHHHHHHH
Confidence            34467789999999999999888763

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.00  E-value=0.00049  Score=51.88  Aligned_cols=24  Identities=17%  Similarity=0.271  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+||+|||||||...|+-.+.
T Consensus         9 lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCcCcHHHHHHHHHHHcC
Confidence            689999999999999999987765

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.00  E-value=0.0006  Score=45.70  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..+++|+|+.||||||+-+.|+-.+.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999986543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.99  E-value=0.00045  Score=48.02  Aligned_cols=23  Identities=17%  Similarity=0.115  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.99  E-value=0.00053  Score=47.90  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..+.|.||.|+|||||++.++..+.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3688999999999999999986653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.99  E-value=0.00045  Score=47.84  Aligned_cols=22  Identities=18%  Similarity=0.063  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3689999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.98  E-value=0.00046  Score=48.29  Aligned_cols=23  Identities=22%  Similarity=0.105  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++|+|+.||||||+.+.|+-.+.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~g   25 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKYG   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            68999999999999999976543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.98  E-value=0.00034  Score=51.70  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=22.3

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         24 DREFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        24 ~~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +.-.++|+|+.|+|||||+++|.|..
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence            34568999999999999999998764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.98  E-value=0.00038  Score=47.87  Aligned_cols=21  Identities=24%  Similarity=0.135  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        11 i~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           11 ILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            589999999999999998754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.97  E-value=0.00046  Score=49.44  Aligned_cols=25  Identities=16%  Similarity=0.038  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +-+++|+|+.||||||+.+.|+--+
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999997543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.97  E-value=0.00031  Score=47.57  Aligned_cols=22  Identities=27%  Similarity=0.288  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.|+|||||++.+.+-
T Consensus        20 ~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           20 RLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999998753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.96  E-value=0.0004  Score=47.15  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      -++|+|+.|+|||||++.+.+
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            468999999999999999984

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.96  E-value=0.00051  Score=46.82  Aligned_cols=23  Identities=30%  Similarity=0.198  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Confidence            36899999999999999987643

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.95  E-value=0.00036  Score=46.84  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        10 i~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A           10 LGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999864

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.95  E-value=0.00053  Score=47.61  Aligned_cols=23  Identities=17%  Similarity=0.134  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.94  E-value=0.00037  Score=47.98  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|++|+|||||++.+.+.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4689999999999999998643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.93  E-value=0.00037  Score=47.14  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999854

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.93  E-value=0.00055  Score=47.15  Aligned_cols=22  Identities=23%  Similarity=0.102  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        28 i~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           28 LVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            6899999999999999998643

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.93  E-value=0.00052  Score=47.31  Aligned_cols=20  Identities=35%  Similarity=0.400  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+.+
T Consensus        28 i~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           28 FLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHh
Confidence            58999999999999999864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.92  E-value=0.00019  Score=50.15  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -.++|+|+.|+|||||++.|.+-
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            35789999999999999999765

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.92  E-value=0.00063  Score=49.47  Aligned_cols=26  Identities=19%  Similarity=0.183  Sum_probs=22.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      .-+.|.||+|+|||||.++++..+..
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~~~~   77 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATETNA   77 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            45789999999999999999987643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.91  E-value=0.00037  Score=49.10  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.|+|||||++.+.+-
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.90  E-value=0.00044  Score=50.62  Aligned_cols=24  Identities=25%  Similarity=0.230  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      --++|+|..|+|||||+++|.+..
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCCC
Confidence            468999999999999999998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.89  E-value=0.00062  Score=46.42  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999865

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.89  E-value=0.00064  Score=50.79  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .+.|.||+|+||||++++++..+
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998775

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.89  E-value=0.00074  Score=51.92  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      |+..+|+||+|+|||||+..|+...
T Consensus       174 GQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          174 GQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEecCCCCChhHHHHHHHHHH
Confidence            6889999999999999999998765

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.88  E-value=0.0007  Score=50.73  Aligned_cols=24  Identities=17%  Similarity=0.205  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+||+|||||||-..|+.-+.
T Consensus         7 ~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            678999999999999999987654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.88  E-value=0.00056  Score=46.78  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+.+
T Consensus        29 i~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           29 VIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68999999999999999864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.87  E-value=0.00061  Score=50.86  Aligned_cols=25  Identities=24%  Similarity=0.243  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .+++|+||+|||||||...|+--+.
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCc
Confidence            3678999999999999999876543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.87  E-value=0.0005  Score=49.74  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .++|+|+.|+|||||++++.+-.
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998643

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.87  E-value=0.00049  Score=47.23  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      -++|+|+.|+|||||++.+.+
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            468999999999999997765

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.87  E-value=0.00052  Score=46.20  Aligned_cols=25  Identities=24%  Similarity=0.535  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ...+.|+||.|+||||+++.++..+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3456899999999999999998765

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.85  E-value=0.00074  Score=47.29  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -.++|+|..|+|||||+..+..-.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            357899999999999999988664

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.84  E-value=0.0007  Score=47.49  Aligned_cols=25  Identities=24%  Similarity=0.211  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -.++|+|+.||||||+.+.|+--+.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4678999999999999999976553

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.84  E-value=0.00035  Score=47.14  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=8.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        11 i~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           11 LLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999998753

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.84  E-value=0.00083  Score=46.93  Aligned_cols=25  Identities=28%  Similarity=0.266  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -+++|+|+.||||||+.+.|+..++
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g   28 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELS   28 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4689999999999999999987654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.84  E-value=0.00066  Score=47.31  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      -++|+|+.|+|||||++.+.+
T Consensus        36 ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            368999999999999999874

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.83  E-value=0.00056  Score=49.64  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .++++|+.|+|||||++.|.+-.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.83  E-value=0.00068  Score=47.12  Aligned_cols=21  Identities=24%  Similarity=0.143  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        28 i~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           28 LLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            689999999999999998753

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.83  E-value=0.00074  Score=46.59  Aligned_cols=21  Identities=14%  Similarity=0.154  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        32 i~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           32 LVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhhC
Confidence            689999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.82  E-value=0.00086  Score=48.00  Aligned_cols=25  Identities=16%  Similarity=0.185  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .-+.|.||.|+||||+.++++..+.
T Consensus        40 ~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3467999999999999999988764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.81  E-value=0.00074  Score=46.33  Aligned_cols=21  Identities=14%  Similarity=0.196  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      -++|+|+.|+|||||++.+.+
T Consensus        22 ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            368999999999999999874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.81  E-value=0.00063  Score=52.66  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..+++|+|++||||||+.+.|+--+
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhc
Confidence            4789999999999999999986433

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.00078  Score=47.22  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        16 i~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           16 IVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            589999999999999999864

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.80  E-value=0.00055  Score=46.61  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999987654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.80  E-value=0.0008  Score=44.19  Aligned_cols=25  Identities=16%  Similarity=-0.045  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..-+.|.||.|+|||++.++|+...
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3457899999999999999998754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.79  E-value=0.00072  Score=46.15  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      -++|+|+.|+|||||++.+.+
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999864

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.79  E-value=0.00078  Score=50.20  Aligned_cols=26  Identities=15%  Similarity=0.165  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..+++|+||+|||||||...|+--+.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCC
Confidence            34789999999999999999986654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.79  E-value=0.00084  Score=46.44  Aligned_cols=22  Identities=18%  Similarity=0.137  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.|+|||||++.+..-
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            3689999999999999988753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.78  E-value=0.0011  Score=47.46  Aligned_cols=25  Identities=36%  Similarity=0.571  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +-+++|.|++||||||+.+.|.-.+
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l   51 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETL   51 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999987654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.78  E-value=0.00075  Score=46.24  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      -++|+|+.|+|||||++.+.+
T Consensus        31 ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            468999999999999999853

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.77  E-value=0.00083  Score=47.32  Aligned_cols=25  Identities=32%  Similarity=0.352  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +-+++|.|+.||||||+.+.|.-.+
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l   30 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERL   30 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence            5578999999999999999987654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.77  E-value=0.00063  Score=49.43  Aligned_cols=24  Identities=29%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .++++|.+|+|||||++.|.+-..
T Consensus       101 ~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          101 RVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             heEEeCCCCCCHHHHHHHHhcccc
Confidence            678999999999999999986543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.76  E-value=0.00087  Score=47.53  Aligned_cols=26  Identities=15%  Similarity=0.123  Sum_probs=22.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +-.++|+|+.||||||+.+.|+--+.
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999986554

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.76  E-value=0.00091  Score=46.67  Aligned_cols=22  Identities=18%  Similarity=0.119  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.|+|||||++.+.+-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3689999999999999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.75  E-value=0.00066  Score=47.63  Aligned_cols=20  Identities=25%  Similarity=0.323  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|++|+|||||++.+.+
T Consensus        40 VvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           40 VVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999999874

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.74  E-value=0.00073  Score=52.84  Aligned_cols=27  Identities=11%  Similarity=0.138  Sum_probs=23.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      ++++.|.|++|+|||||+..++....+
T Consensus       203 G~liiI~G~pG~GKTtl~l~ia~~~~~  229 (454)
T 2r6a_A          203 SDLIIVAARPSVGKTAFALNIAQNVAT  229 (454)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999998876544

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.73  E-value=0.0011  Score=46.76  Aligned_cols=25  Identities=28%  Similarity=0.493  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +-+++|.|+.||||||+.+.|.-.+
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l   27 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETL   27 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5578999999999999999987655

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.73  E-value=0.00081  Score=47.88  Aligned_cols=25  Identities=32%  Similarity=0.603  Sum_probs=18.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +-+++|.|+.||||||+.+.|.-.+
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5688999999999999999986544

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.72  E-value=0.0011  Score=50.24  Aligned_cols=24  Identities=33%  Similarity=0.531  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -+++|+|+.|+|||||+..|+..+
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            368999999999999999998765

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.71  E-value=0.001  Score=46.03  Aligned_cols=21  Identities=19%  Similarity=0.085  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus        12 i~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           12 CVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999998754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.69  E-value=0.001  Score=50.11  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .+++|+||.|||||||-..|+--+.
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCC
Confidence            3789999999999999999886554

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.68  E-value=0.001  Score=45.83  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .+.|.||.|+||||+++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999998654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.66  E-value=0.00054  Score=49.43  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.|.||+|+|||+|.++|+....
T Consensus        47 vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC
Confidence            56899999999999999998654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.65  E-value=0.00069  Score=46.00  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~   46 (159)
                      -++|+|+.|+|||||++.+.
T Consensus        24 ~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36899999999999999884

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.64  E-value=0.0011  Score=49.92  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++++.|.||+|+|||||+..++..
T Consensus       122 G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          122 MAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999988875

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.64  E-value=0.00035  Score=48.01  Aligned_cols=22  Identities=23%  Similarity=0.194  Sum_probs=3.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999998765

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.62  E-value=0.0016  Score=44.69  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=19.2

Q ss_pred             CCeEEEEcCCCCcHHHHH-HHHHHH
Q psy17514         25 REFNAITGLNGTGKSNIL-DGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl-~~i~~~   48 (159)
                      +.+.+++||.|+||||++ +.+..+
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            568899999999999997 554433

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.59  E-value=0.0016  Score=44.51  Aligned_cols=25  Identities=28%  Similarity=0.222  Sum_probs=20.3

Q ss_pred             cCCCCeEEEEcCCCCcHHHHHHHHH
Q psy17514         22 DFDREFNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        22 ~~~~~~~~liG~NGaGKSTLl~~i~   46 (159)
                      .+.+.-+.|.|++|+||||+...+.
T Consensus        13 ~v~G~gvli~G~SGaGKStlal~L~   37 (181)
T 3tqf_A           13 VIDKMGVLITGEANIGKSELSLALI   37 (181)
T ss_dssp             EETTEEEEEEESSSSSHHHHHHHHH
T ss_pred             EECCEEEEEEcCCCCCHHHHHHHHH
Confidence            3456678899999999999977765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.59  E-value=0.0012  Score=51.37  Aligned_cols=25  Identities=16%  Similarity=0.367  Sum_probs=22.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .+++|+|++|+||||+...|++.+.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999988754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.58  E-value=0.0014  Score=46.73  Aligned_cols=24  Identities=21%  Similarity=0.153  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -+++|.|+.||||||+.+.|+-.+
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHc
Confidence            367899999999999999998665

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.58  E-value=0.0014  Score=46.34  Aligned_cols=26  Identities=15%  Similarity=0.192  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..++.|+||.||||+|.-+.|+--+.
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            35789999999999999998875543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.58  E-value=0.0015  Score=50.95  Aligned_cols=26  Identities=15%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.+++++|++|+||||++..|+..+.
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            46889999999999999999987654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.57  E-value=0.0021  Score=45.35  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=23.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +-+++|.|+.||||||+.+.|.-.+.
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            56889999999999999999987765

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.56  E-value=0.0013  Score=50.71  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+||+|+|||||...|+--+.
T Consensus         4 ~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             EEEEECcchhhHHHHHHHHHHHCC
Confidence            678999999999999999876554

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.56  E-value=0.00033  Score=48.80  Aligned_cols=20  Identities=20%  Similarity=0.363  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+.+
T Consensus        14 i~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A           14 ICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             EEEECCTTSSHHHHHCBCTT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            58999999999999998864

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.56  E-value=0.0015  Score=47.90  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .-+.|.||.|+|||++.++++..+
T Consensus        68 ~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999988766

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.54  E-value=0.0016  Score=45.62  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +++|+||.||||+|.-+.|+--+..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~   26 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGF   26 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            4679999999999999998866543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.53  E-value=0.0014  Score=47.38  Aligned_cols=24  Identities=17%  Similarity=0.116  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -+.|.||.|+|||+|.++++....
T Consensus        66 ~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           66 SVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhC
Confidence            467899999999999999987654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.53  E-value=0.0017  Score=47.73  Aligned_cols=26  Identities=31%  Similarity=0.263  Sum_probs=21.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      -.+.|.||.|+|||+|.++|+..+..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~l~~   62 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRKMGI   62 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            35667799999999999999987753

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.51  E-value=0.0016  Score=46.24  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +-+++|.|+.||||||+.+.|.-.+
T Consensus        21 ~~~i~~~G~~g~GKst~~~~l~~~l   45 (223)
T 3ld9_A           21 SMFITFEGIDGSGKTTQSHLLAEYL   45 (223)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5688999999999999999987544

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.51  E-value=0.0017  Score=47.45  Aligned_cols=27  Identities=19%  Similarity=0.254  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.-+.|.||.|+|||++.++++..+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~   76 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANA   76 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345789999999999999999987743

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.49  E-value=0.0016  Score=49.01  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=22.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +..+.|.||.|+||||+++.++..+
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999998765

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.49  E-value=0.002  Score=48.14  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++++.|.||+|+|||||...++..
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHH
Confidence            578999999999999999988765

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.49  E-value=0.002  Score=48.09  Aligned_cols=25  Identities=28%  Similarity=0.089  Sum_probs=21.4

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHH
Q psy17514         23 FDREFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        23 ~~~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +.+.-+.|+|++|+||||+...+..
T Consensus       142 ~~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          142 VYGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHh
Confidence            4466789999999999999888875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.49  E-value=0.00079  Score=52.65  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .-.++|+|++|+|||||++.|.+-
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            357899999999999999999763

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.48  E-value=0.0015  Score=55.24  Aligned_cols=34  Identities=26%  Similarity=0.553  Sum_probs=25.1

Q ss_pred             EEEEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHH
Q psy17514          4 KSMVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNI   41 (159)
Q Consensus         4 ~~l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTL   41 (159)
                      ..|++++-+.++=    ++++     ..+++|+|.||||||||
T Consensus         2 ~~i~i~gar~hNL----kni~~~ip~~~l~v~tG~SGSGKSsL   40 (916)
T 3pih_A            2 NEIVVKGARVHNL----KNITVRIPKNRLVVITGVSGSGKSSL   40 (916)
T ss_dssp             CEEEEESBCSTTC----CSBCCEEETTSEEEEEESTTSSSHHH
T ss_pred             CcEEEeCcccccc----CcceeccCCCcEEEEECCCCCcHHHH
Confidence            3467777654432    3343     68999999999999998

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.44  E-value=0.0021  Score=50.20  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=22.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      -+.|.||+|+|||||.++|+..+...
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~~~~   77 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYANAD   77 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            37899999999999999999887654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=96.41  E-value=0.0018  Score=50.79  Aligned_cols=22  Identities=32%  Similarity=0.323  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.|.+-.
T Consensus       227 V~ivG~~nvGKSSLln~L~~~~  248 (462)
T 3geh_A          227 VAIVGRPNVGKSSLLNAWSQSD  248 (462)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998864

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.41  E-value=0.0013  Score=45.87  Aligned_cols=21  Identities=24%  Similarity=0.340  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHH-HHHH
Q psy17514         28 NAITGLNGTGKSNILDG-ICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~-i~~~   48 (159)
                      ++|+|+.|+|||||++. +.+-
T Consensus        18 i~v~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           18 LVLVGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EEEEECTTSSHHHHHTTBHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            68999999999999998 5544

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.40  E-value=0.0022  Score=47.88  Aligned_cols=24  Identities=25%  Similarity=0.221  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .-+.|.||.|+|||+|.++++..+
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             ceEEEECCCCccHHHHHHHHHHHc
Confidence            457899999999999999999876

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.39  E-value=0.0022  Score=48.48  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=22.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..-+.|.||+|+|||++.++|+..+.
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            45678999999999999999998764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.38  E-value=0.0024  Score=47.52  Aligned_cols=25  Identities=24%  Similarity=0.193  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      -+.|.||.|+|||+|.++++.....
T Consensus        53 ~vLl~GppGtGKT~la~aia~~~~~   77 (322)
T 3eie_A           53 GILLYGPPGTGKSYLAKAVATEANS   77 (322)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHCC
Confidence            4789999999999999999877643

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.38  E-value=0.0028  Score=47.04  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .-+.|.||.|+|||+|+.+|+..+.
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999987655

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.37  E-value=0.0015  Score=50.28  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|..++|||||+++|++..
T Consensus         3 I~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            3 IGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            6899999999999999998653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.36  E-value=0.0029  Score=47.57  Aligned_cols=26  Identities=38%  Similarity=0.493  Sum_probs=22.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      ..+.|.||.|+|||++.++++..+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46789999999999999999988763

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.35  E-value=0.0028  Score=47.19  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      .+.|.||.|+|||++.++|+.....
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~~~~   81 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYEMSA   81 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhCC
Confidence            5789999999999999999877643

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.34  E-value=0.0024  Score=48.23  Aligned_cols=25  Identities=32%  Similarity=0.218  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .-+.|.||.|+|||||.++|+..+.
T Consensus       118 ~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          118 KGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcC
Confidence            4578999999999999999987764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.34  E-value=0.0019  Score=47.42  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .++|+|.+|+|||||+++|.+..
T Consensus       122 ~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          122 RALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             eEEEEecCCCchHHHHHHHhcCc
Confidence            47899999999999999998643

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=95.33  E-value=0.00061  Score=46.95  Aligned_cols=20  Identities=20%  Similarity=0.242  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+.+
T Consensus        33 i~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           33 CVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            68999999999999988864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.32  E-value=0.0011  Score=47.97  Aligned_cols=25  Identities=20%  Similarity=0.139  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +-+++|.|+.||||||+.+.|+-.+
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4578999999999999999887554

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.31  E-value=0.0025  Score=44.56  Aligned_cols=24  Identities=25%  Similarity=0.592  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .+++|-|+-||||||+.+.|.-.+
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L   26 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRL   26 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHH
Confidence            467899999999999999998665

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.29  E-value=0.0024  Score=47.49  Aligned_cols=28  Identities=11%  Similarity=0.234  Sum_probs=23.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      +.-+.|.||.|+|||+|.++++..+...
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~   73 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLD   73 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            4567899999999999999999877543

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.28  E-value=0.0029  Score=49.73  Aligned_cols=26  Identities=15%  Similarity=0.248  Sum_probs=22.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +...+|+|++|+|||||++.|..-..
T Consensus       151 Gq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          151 GGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             TCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCccHHHHHHHhhhh
Confidence            57889999999999999998876543

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.0029  Score=49.19  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.|.||.|+|||+|.++|+.-+..
T Consensus       209 iLL~GPPGtGKT~lakAiA~~~~~  232 (428)
T 4b4t_K          209 VLLYGPPGTGKTMLVKAVANSTKA  232 (428)
T ss_dssp             EEEESCTTTTHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            689999999999999999987653

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.27  E-value=0.0025  Score=45.83  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=22.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..-+.|.||.|+|||++.++|+....
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            45678999999999999999987754

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.27  E-value=0.0027  Score=53.34  Aligned_cols=18  Identities=33%  Similarity=0.648  Sum_probs=16.9

Q ss_pred             CCeEEEEcCCCCcHHHHH
Q psy17514         25 REFNAITGLNGTGKSNIL   42 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl   42 (159)
                      +.+++|+|.||||||||.
T Consensus        36 ~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           36 DALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             SSEEEEESSTTSSHHHHH
T ss_pred             CCEEEEECCCCCCHHHHH
Confidence            689999999999999995

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.25  E-value=0.0029  Score=47.99  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=22.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ...+.|+||.|+||||+.++|+..+.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            34578999999999999999998764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.25  E-value=0.0011  Score=50.07  Aligned_cols=25  Identities=24%  Similarity=0.191  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .-.++|+|..++|||||+++|.|..
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCC
Confidence            4468999999999999999998754

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.24  E-value=0.0032  Score=49.15  Aligned_cols=27  Identities=19%  Similarity=0.254  Sum_probs=23.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      ..-+.|+||.|+||||+.++|+..+..
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            345789999999999999999988754

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.22  E-value=0.0033  Score=47.49  Aligned_cols=25  Identities=24%  Similarity=0.193  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      -+.|.||.|+|||+|.++++..+..
T Consensus        86 ~iLL~GppGtGKT~la~ala~~~~~  110 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVATEANS  110 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCC
Confidence            3689999999999999999987653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.21  E-value=0.0037  Score=47.12  Aligned_cols=25  Identities=32%  Similarity=0.337  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +..+.|.||.|+|||||++.++..+
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999998765

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.18  E-value=0.0029  Score=49.63  Aligned_cols=24  Identities=25%  Similarity=0.471  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .-+.|+||+|+|||++.++|+..+
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHH
Confidence            346899999999999999999876

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.18  E-value=0.0014  Score=42.91  Aligned_cols=25  Identities=12%  Similarity=-0.118  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .-+.|.||.|+|||++.++|+....
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CcEEEECCCCccHHHHHHHHHHhCC
Confidence            4477999999999999999875443

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.17  E-value=0.0035  Score=52.26  Aligned_cols=27  Identities=15%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      ++.++|+||+||||||++.++.+....
T Consensus       109 ~~~vii~gpTGSGKTtllp~ll~~~~~  135 (773)
T 2xau_A          109 NQIMVFVGETGSGKTTQIPQFVLFDEM  135 (773)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence            578999999999999998888655433

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.16  E-value=0.0025  Score=51.12  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -.++|+|..|+|||||+++|.+..
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            468999999999999999998753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.15  E-value=0.0042  Score=44.39  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .-+++++|+-|+||||++..|+..+
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999998554

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0037  Score=48.70  Aligned_cols=24  Identities=21%  Similarity=0.219  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.|.||.|+|||+|.++|++-...
T Consensus       218 vLLyGPPGTGKTllAkAiA~e~~~  241 (434)
T 4b4t_M          218 ALMYGPPGTGKTLLARACAAQTNA  241 (434)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             eEEECcCCCCHHHHHHHHHHHhCC
Confidence            578999999999999999987653

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0037  Score=48.72  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.|.||.|+|||+|.++|+.-...
T Consensus       218 vLL~GPPGtGKTllAkAiA~e~~~  241 (437)
T 4b4t_L          218 VLLYGPPGTGKTLLAKAVAATIGA  241 (437)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCC
Confidence            578999999999999999987654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=96.14  E-value=0.0025  Score=47.17  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         6 I~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            6 LLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEECCTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            589999999999999997653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.13  E-value=0.0038  Score=49.54  Aligned_cols=24  Identities=21%  Similarity=0.477  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .+++|+|++|+||||++..|+..+
T Consensus       102 ~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W          102 NVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999998554

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.09  E-value=0.0036  Score=47.66  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ..++++|.+|+|||||+++|.+.
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhh
Confidence            35899999999999999999987

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.09  E-value=0.003  Score=46.61  Aligned_cols=25  Identities=32%  Similarity=0.430  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..+.|.||.|+||||+.++++..+.
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~~   63 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHELG   63 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhC
Confidence            4578999999999999999987653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.06  E-value=0.0034  Score=44.04  Aligned_cols=24  Identities=21%  Similarity=0.141  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .+.|.||.|+||||+..+|+..+.
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999987764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=96.06  E-value=0.0028  Score=48.68  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++++|+.|+|||||+++|.+.
T Consensus        10 ~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A           10 NIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4689999999999999999874

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.04  E-value=0.0025  Score=47.55  Aligned_cols=25  Identities=28%  Similarity=0.300  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .-+.|.||.|+|||++.++++..+.
T Consensus        46 ~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           46 GGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             ceEEEECCCCccHHHHHHHHHHhCc
Confidence            3478999999999999999998775

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.04  E-value=0.0019  Score=50.13  Aligned_cols=21  Identities=38%  Similarity=0.433  Sum_probs=0.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      .++|+|++|+|||||++.|.+
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~   25 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAG   25 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEE
T ss_pred             EEEEECCCCCCHHHHHHHHhC

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.04  E-value=0.0038  Score=46.41  Aligned_cols=24  Identities=25%  Similarity=0.599  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++++.|.|++|+|||||...++.-
T Consensus        98 g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           98 QSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999888753

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.99  E-value=0.0048  Score=42.79  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +++|-|.-||||||..+.|+--+
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L   24 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYL   24 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46788999999999999987554

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.0048  Score=47.54  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=21.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      +.|.||.|+|||.|.+++++-....
T Consensus       185 vLL~GPPGTGKTllAkAiA~e~~~~  209 (405)
T 4b4t_J          185 VILYGPPGTGKTLLARAVAHHTDCK  209 (405)
T ss_dssp             EEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred             eEEeCCCCCCHHHHHHHHHHhhCCC
Confidence            5789999999999999999877543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=95.99  E-value=0.00063  Score=46.76  Aligned_cols=19  Identities=32%  Similarity=0.380  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~   46 (159)
                      ++|+|+.|+|||||++.+.
T Consensus        36 i~vvG~~~~GKSsli~~l~   54 (199)
T 3l0i_B           36 LLLIGDSGVGKSCLLLRFA   54 (199)
T ss_dssp             EEEECCTTSCCTTTTTSSB
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            5899999999999998875

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.97  E-value=0.0059  Score=45.83  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      ..+.|.||.|+||||++++++..+..
T Consensus        39 ~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            35789999999999999999877643

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.97  E-value=0.0044  Score=48.26  Aligned_cols=24  Identities=25%  Similarity=0.221  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .-+.|.||.|+|||+|.++|+..+
T Consensus       168 ~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHc
Confidence            346799999999999999999876

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.96  E-value=0.0048  Score=45.72  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      +.++.|.||.|+|||||++.+..-
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHH
Confidence            468899999999999999988654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=95.96  E-value=0.0034  Score=51.71  Aligned_cols=23  Identities=22%  Similarity=0.079  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .++|+|+.|+|||||+++|.|-.
T Consensus        71 ~V~VvG~~naGKSSLlNaLlg~~   93 (695)
T 2j69_A           71 RLLVLGDMKRGKSTFLNALIGEN   93 (695)
T ss_dssp             EEEEECCTTSCHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=95.94  E-value=0.0048  Score=52.44  Aligned_cols=37  Identities=22%  Similarity=0.438  Sum_probs=23.5

Q ss_pred             EEEEeCeeeecCCeeeecCC-CCeEEEEcCCCCcHHHH
Q psy17514          5 SMVLDGFKSYGTRVEINDFD-REFNAITGLNGTGKSNI   41 (159)
Q Consensus         5 ~l~l~~~~~~~~~~~l~~~~-~~~~~liG~NGaGKSTL   41 (159)
                      .|.+++-+.++=+.+=.++. ..+++|+|.||||||||
T Consensus        23 ~I~i~gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSL   60 (972)
T 2r6f_A           23 KIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSL   60 (972)
T ss_dssp             EEEEEEECSSSCCSEEEEEETTSEEEEEESTTSSHHHH
T ss_pred             eEEEeccccccCCceeeeccCCcEEEEECCCCCCHHHH
Confidence            45666554433222111111 68999999999999999

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.94  E-value=0.0056  Score=45.50  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=20.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++++.|.|++|+|||||+..++.-
T Consensus        68 G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           68 RNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            689999999999999998877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	2e-31
g1xew.1	329	c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furi	8e-26
d1e69a_	308	c.37.1.12 (A:) Smc head domain {Thermotoga maritim	2e-25
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-15
d1qhla_	222	c.37.1.12 (A:) Cell division protein MukB {Escheri	8e-14
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-10

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (285), Expect = 2e-31
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 3   IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ 62
           +  + L  FKSY    ++   +  F +I G NG+GKSN++D I FVLG++   +R+N L+
Sbjct: 3   LVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILK 62

Query: 63  ELIYKNGQAGVTKASVTLTFDNSDKKNCP--------IGYENDNTIVICRQISIPSNTRY 114
           +LIY     GV     +  +DN    +             + +  + + R IS   +T Y
Sbjct: 63  DLIY----RGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSY 118

Query: 115 MINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPH 158
            I+G +V+ K  S    + N+ +   +FL+ QG V ++    P 
Sbjct: 119 KIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPV 162

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 96.6 bits (239), Expect = 2e-25
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQV-KQVRAN 59
           M +K + L GFKS+G    I  F     AI G NG+GKSNI+D I +V G Q  K++RA+
Sbjct: 1   MRLKKLYLKGFKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRAS 59

Query: 60  TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
              ++I+   +                     +  EN   I + R++       Y +NGS
Sbjct: 60  EKFDMIFAGSEN---------LPPAGSAYVELVFEENGEEITVARELKRTGENTYYLNGS 110

Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPH 158
            V  K + D F+   L V+  + ++ QG++ +++N  P 
Sbjct: 111 PVRLKDIRDRFAGTGLGVDF-YSIVGQGQIDRIVNASPE 148

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

 Score = 64.3 bits (155), Expect = 8e-14
 Identities = 19/154 (12%), Positives = 41/154 (26%), Gaps = 20/154 (12%)

Query: 1   MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVL-GIQVKQVRAN 59
              +S+ L  +  +       D D     ++G NG GKS  +      L          N
Sbjct: 2   GKFRSLTLINWNGF-FARTF-DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 59

Query: 60  TLQELI-------YKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNT 112
           T +            +G+         L   NS  +           +V+  ++   +  
Sbjct: 60  TTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQ----------RVVVGVRLQQVAGR 109

Query: 113 RYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQ 146
              ++      + +        L     +    +
Sbjct: 110 DRKVDIKPFAIQGLPMSVQPTQLVTETLNERQAR 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.97
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.97
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.95
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.95
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.94
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.94
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.94
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.92
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.91
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.89
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.89
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.89
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.87
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.86
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.8
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.75
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.72
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.7
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.69
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.41
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.39
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	99.21
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.96
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.18
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.11
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.06
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.06
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.97
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.96
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.88
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.87
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.86
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.83
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.82
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.81
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.8
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.77
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.75
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.75
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.74
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.73
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.73
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.71
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.7
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.69
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.67
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.66
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.6
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.59
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.57
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.56
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.56
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.55
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.55
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.55
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.54
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.54
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.54
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.52
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.52
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.5
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.5
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.49
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.47
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.47
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.46
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.45
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.42
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.42
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.41
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.39
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.38
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.36
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.36
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.36
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.35
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.35
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.33
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.31
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.29
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.28
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.28
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.27
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.27
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.27
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.24
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.23
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.22
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.21
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.2
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.2
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.19
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.18
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.17
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.15
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.15
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.14
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.13
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.12
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.12
d1okkd2	207	GTPase domain of the signal recognition particle r	97.12
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.1
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.09
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.08
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.08
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.08
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.07
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.07
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.07
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.07
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.06
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.06
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.04
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.03
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.03
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.03
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.03
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.02
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.02
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.99
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.99
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.98
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.97
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.96
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.96
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.95
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.94
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.94
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.94
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.93
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.92
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.91
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.91
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.9
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.88
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.88
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.87
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.87
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.86
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.85
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.85
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.85
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.83
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.82
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.82
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.81
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.8
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.8
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.8
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.76
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.76
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.76
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.75
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.75
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.75
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.75
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.75
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.75
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.74
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.73
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.7
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.69
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.64
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.64
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.64
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.63
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.63
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.62
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.61
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.58
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.58
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.58
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.58
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.56
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.55
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.51
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.5
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.49
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.49
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.46
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	96.45
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.45
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.43
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.4
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.39
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.36
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.3
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.28
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.27
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.27
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.23
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.21
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.15
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.14
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.14
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.12
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.1
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.09
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.07
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.05
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.04
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.03
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.0
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.99
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.97
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.91
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.89
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.87
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.82
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.8
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	95.7
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.69
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.65
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	95.61
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.59
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.58
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.52
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.38
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	95.28
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.24
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.23
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.05
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.03
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	94.86
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.79
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.64
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	94.59
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.45
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	94.42
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.4
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.35
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.16
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.1
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.09
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.06
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.97
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.91
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.77
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.69
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.54
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.42
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.83
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	92.73
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.58
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.56
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.14
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.03
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	91.56
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.31
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	89.95
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	88.94
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	88.8
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	88.79
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.35
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	87.97
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	87.9
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	87.81
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	87.79
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	87.66
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.13
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	86.96
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	86.53
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	86.31
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	85.75
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	84.55
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	84.16
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	83.57
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.47
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.39
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	81.69
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	80.54

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=5.6e-34  Score=203.00  Aligned_cols=137  Identities=20%  Similarity=0.248  Sum_probs=87.8

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ ++|++.++|+++|     |++++|+|||||||||||++|+|+++|++|+|.++| +++..    ....++.|+
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g-~~i~~----~~~~~r~ig   75 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE-KRMND----TPPAERGVG   75 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESS-SCCTT----SCGGGTCEE
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECC-EECCC----Cchhhceee
Confidence            689999 9999999999998     799999999999999999999999999999999998 44321    112346799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h-hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G-RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~-~ia~~  152 (159)
                      |+||++         .+++++||++|+.++..  +....+.+..+++.++++.++|..   .+|..||+ |  + +|||+
T Consensus        76 ~v~Q~~---------~l~~~~tv~eni~~~~~--~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAra  144 (232)
T d2awna2          76 MVFQSY---------ALYPHLSVAENMSFGLK--LAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT  144 (232)
T ss_dssp             EECSSC---------CC-----------------------CHHHHHHHHHHHHC---------------------CHHHH
T ss_pred             eecccc---------ccccchhHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence            999995         68999999999999854  222233444678999999999976   57889998 3  3 99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      |+.+|+
T Consensus       145 L~~~P~  150 (232)
T d2awna2         145 LVAEPS  150 (232)
T ss_dssp             HHTCCS
T ss_pred             HhcCCC
Confidence            999996

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=6.3e-35  Score=208.64  Aligned_cols=142  Identities=17%  Similarity=0.243  Sum_probs=112.0

Q ss_pred             CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514          1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT   74 (159)
Q Consensus         1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~   74 (159)
                      |+|..|+++|+ ++|++..+|+++|     +++++|+||||||||||+++|+|+++|++|+|.++| +++... +   ..
T Consensus         2 ~~M~~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g-~~i~~~-~---~~   76 (239)
T d1v43a3           2 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD-RDVTYL-P---PK   76 (239)
T ss_dssp             CCCCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTTS-C---GG
T ss_pred             cccCeEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcc-eecccC-C---cc
Confidence            45777999999 9999999999998     799999999999999999999999999999999998 443221 1   13


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---  147 (159)
                      ++.|+|+||++         .+|+++||.+|+.++..  .+...+....+++.++++.++|..   .+|.+||+ |+   
T Consensus        77 ~r~ig~v~Q~~---------~l~~~ltv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv  145 (239)
T d1v43a3          77 DRNISMVFQSY---------AVWPHMTVYENIAFPLK--IKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV  145 (239)
T ss_dssp             GGTEEEEEC---------------CCCHHHHHHTTCC----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH
T ss_pred             cceEEEEeech---------hhcccchHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence            45799999985         68999999999998764  222233444678899999999976   67889998 44   


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      +|||+|+.+|+
T Consensus       146 aiAraL~~~P~  156 (239)
T d1v43a3         146 AVARAIVVEPD  156 (239)
T ss_dssp             HHHHHHTTCCS
T ss_pred             HHHhhhccCCC
Confidence            99999999996

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.97  E-value=5.9e-34  Score=203.82  Aligned_cols=143  Identities=16%  Similarity=0.200  Sum_probs=113.9

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--CceeE
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--AGVTK   75 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~   75 (159)
                      ..|+++|+ |+|++..+|+++|     |++++|+||||||||||+++|+|++.|++|+|+++| +++......  ....+
T Consensus         2 ~~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g-~~i~~~~~~~~~~~~~   80 (240)
T d1g2912           2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD-KLVADPEKGIFVPPKD   80 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT-EEEEEGGGTEECCGGG
T ss_pred             CcEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECC-EEecccchhhhccccc
Confidence            45999999 9999999999998     799999999999999999999999999999999988 333211111  11124


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h-h
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G-R  148 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~-~  148 (159)
                      +.|+++||++         .+++++||.+|+.++..  ..........+++.++++.++|..   .+|..||+ |  + +
T Consensus        81 r~ig~v~Q~~---------~L~~~ltV~eni~~~~~--~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~  149 (240)
T d1g2912          81 RDIAMVFQSY---------ALYPHMTVYDNIAFPLK--LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVA  149 (240)
T ss_dssp             SSEEEECSCC---------CCCTTSCHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHH
T ss_pred             ccceecccch---------hhcchhhhhHhhhhhHH--HcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence            6799999995         68899999999988743  111123344567999999999976   57889998 3  3 9


Q ss_pred             HhHhhcCCCC
Q psy17514        149 VTKVLNMKPH  158 (159)
Q Consensus       149 ia~~l~~~p~  158 (159)
                      |||+|+.+|+
T Consensus       150 IAraL~~~P~  159 (240)
T d1g2912         150 LGRAIVRKPQ  159 (240)
T ss_dssp             HHHHHHTCCS
T ss_pred             HHHHHhcCCC
Confidence            9999999996

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=6.6e-34  Score=203.51  Aligned_cols=143  Identities=15%  Similarity=0.190  Sum_probs=113.3

Q ss_pred             EEEEEeCe-eee--cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh-CCCcee
Q psy17514          4 KSMVLDGF-KSY--GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN-GQAGVT   74 (159)
Q Consensus         4 ~~l~l~~~-~~~--~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~   74 (159)
                      ..|+++|+ |+|  ++..+|+++|     ||+++|+||||||||||+++|+|+++|++|+|.++| +++.... ......
T Consensus         2 ~~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g-~~i~~~~~~~~~~~   80 (242)
T d1oxxk2           2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD-RLVASNGKLIVPPE   80 (242)
T ss_dssp             CCEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETT-EEEEETTEESSCGG
T ss_pred             CEEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECC-EEeecCchhhcchh
Confidence            34899999 999  5567899988     799999999999999999999999999999999988 4432111 111223


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h-
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G-  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~-  147 (159)
                      +++|++|||++         .+||++||++|+.++..  .....+....+++.++++.++|..   .+|.+||+ |  + 
T Consensus        81 rr~ig~vfQ~~---------~L~p~ltv~eni~~~l~--~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRv  149 (242)
T d1oxxk2          81 DRKIGMVFQTW---------ALYPNLTAFENIAFPLT--NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRV  149 (242)
T ss_dssp             GSCEEEEETTS---------CCCTTSCHHHHHHGGGT--TSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred             hccceEEeccc---------cccccccHHHHhhhhhH--hhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHH
Confidence            56799999985         68999999999998754  111123334578999999999975   67899998 3  3 


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      +|||+|+.+|+
T Consensus       150 aiARaL~~~P~  160 (242)
T d1oxxk2         150 ALARALVKDPS  160 (242)
T ss_dssp             HHHHHHTTCCS
T ss_pred             HHHhHHhhccc
Confidence            99999999996

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.95  E-value=3.4e-32  Score=193.29  Aligned_cols=133  Identities=16%  Similarity=0.257  Sum_probs=108.9

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ |+|++. +|+++|     +|+++|+||||||||||+++|+|++.|++|+|.++| +++..    ....++.|+
T Consensus         2 i~v~nlsk~y~~~-aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G-~~i~~----~~~~~r~ig   75 (229)
T d3d31a2           2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG-KDVTD----LSPEKHDIA   75 (229)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETT-EECTT----SCHHHHTCE
T ss_pred             EEEEEEEEEeCCE-EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEcc-Eeccc----cchhHhcce
Confidence            799999 999874 788887     799999999999999999999999999999999998 44321    111345799


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia~~  152 (159)
                      |+||++         .+|+++||.+|+.++..  .  .+. ...+++.++++.++|..   ..|..||+   |+ +|||+
T Consensus        76 ~v~Q~~---------~l~~~~tV~enl~~~~~--~--~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAra  141 (229)
T d3d31a2          76 FVYQNY---------SLFPHMNVKKNLEFGMR--M--KKI-KDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARA  141 (229)
T ss_dssp             EECTTC---------CCCTTSCHHHHHHHHHH--H--HCC-CCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHH
T ss_pred             eecccc---------ccCccccHHHHHHHHHh--h--ccc-cHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhh
Confidence            999995         68999999999988643  1  122 24578999999999976   57888888   33 99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      |+.+|+
T Consensus       142 L~~~P~  147 (229)
T d3d31a2         142 LVTNPK  147 (229)
T ss_dssp             TTSCCS
T ss_pred             hhccCC
Confidence            999996

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.1e-32  Score=197.30  Aligned_cols=141  Identities=18%  Similarity=0.270  Sum_probs=108.9

Q ss_pred             EEEeCe-eeecCC----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC-CCcee
Q psy17514          6 MVLDGF-KSYGTR----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG-QAGVT   74 (159)
Q Consensus         6 l~l~~~-~~~~~~----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~   74 (159)
                      |+++|+ +.|+..    ++|+++|     |++++|+||||||||||+++|+|+.+|++|+|.++| +++..... .....
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g-~~i~~~~~~~~~~~   80 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG-QELTTLSESELTKA   80 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETT-EEECTTCHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcC-eEeeeCChhhhhhh
Confidence            899999 999754    5788888     799999999999999999999999999999999987 33321110 00112


Q ss_pred             EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-
Q psy17514         75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-  147 (159)
Q Consensus        75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-  147 (159)
                      ++.|++|||++         .+++++||.+|+.++..  .....+....+++.++++.++|..   .+|.+||+   |+ 
T Consensus        81 rr~ig~VfQ~~---------~l~~~~tv~eni~~~l~--~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRv  149 (240)
T d3dhwc1          81 RRQIGMIFQHF---------NLLSSRTVFGNVALPLE--LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRV  149 (240)
T ss_dssp             HHHEEECCSSC---------CCCTTSBHHHHHHHHHH--TTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHH
T ss_pred             hcccccccccc---------ccCCCccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence            35799999985         58888999999988643  110122233578899999999976   57889888   33 


Q ss_pred             hHhHhhcCCCC
Q psy17514        148 RVTKVLNMKPH  158 (159)
Q Consensus       148 ~ia~~l~~~p~  158 (159)
                      +|||+|+.+|+
T Consensus       150 aiAraL~~~P~  160 (240)
T d3dhwc1         150 AIARALASNPK  160 (240)
T ss_dssp             HHHHHHHTCCS
T ss_pred             HHhhhhccCCC
Confidence            99999999996

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=1.5e-31  Score=190.26  Aligned_cols=143  Identities=17%  Similarity=0.253  Sum_probs=106.6

Q ss_pred             EEEeCe-eeecCC----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--Cce
Q psy17514          6 MVLDGF-KSYGTR----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--AGV   73 (159)
Q Consensus         6 l~l~~~-~~~~~~----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~~~   73 (159)
                      |+++|+ ++|+..    .+|+++|     ||+++|+|||||||||||++|+|++.|++|+|+++| .++...+..  ...
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g-~~i~~~~~~~~~~~   80 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN-IKTNDLDDDELTKI   80 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EECTTCCHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECC-EEcCcCChhhcchh
Confidence            799999 999642    3688887     799999999999999999999999999999999988 332110100  011


Q ss_pred             eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE-EECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-C-
Q psy17514         74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY-MINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-Q-  146 (159)
Q Consensus        74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q-  146 (159)
                      +++.|++|||++         .+++++||.+|+.++..... .........+++.++++.++|..    .+|.+||+ | 
T Consensus        81 r~~~ig~v~Q~~---------~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqk  151 (230)
T d1l2ta_          81 RRDKIGFVFQQF---------NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQ  151 (230)
T ss_dssp             HHHHEEEECTTC---------CCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHH
T ss_pred             hcceEEEEecch---------hhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHH
Confidence            235699999995         58889999999987543100 00112233457888999999964    46889998 3 


Q ss_pred             -h-hHhHhhcCCCC
Q psy17514        147 -G-RVTKVLNMKPH  158 (159)
Q Consensus       147 -~-~ia~~l~~~p~  158 (159)
                       + +|||||+.+|+
T Consensus       152 QRvaIAraL~~~P~  165 (230)
T d1l2ta_         152 QRVAIARALANNPP  165 (230)
T ss_dssp             HHHHHHHHHTTCCS
T ss_pred             HHHHHHhhhhcCCC
Confidence             3 99999999996

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=5e-31  Score=190.95  Aligned_cols=143  Identities=17%  Similarity=0.245  Sum_probs=110.5

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC-------
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA-------   71 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~-------   71 (159)
                      .|+++|+ ++|++.++|+++|     ||+++|+||||||||||+++|+|+++|++|+|.++| +++.......       
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G-~~i~~~~~~~~~~~~~~   80 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG-QNINLVRDKDGQLKVAD   80 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EECCEEECTTSSEEESC
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECC-EEeccCCccchhccccc
Confidence            5899999 9999999999998     799999999999999999999999999999999987 3321100000       


Q ss_pred             ----ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeE
Q psy17514         72 ----GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFL  143 (159)
Q Consensus        72 ----~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l  143 (159)
                          ...+++|++|||++         .+++.+||.+|+.++... ..........+++.++++.++|..    .+|.+|
T Consensus        81 ~~~~~~~r~~ig~vfQ~~---------~l~~~~tv~env~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~L  150 (258)
T d1b0ua_          81 KNQLRLLRTRLTMVFQHF---------NLWSHMTVLENVMEAPIQ-VLGLSKHDARERALKYLAKVGIDERAQGKYPVHL  150 (258)
T ss_dssp             HHHHHHHHHHEEEECSSC---------CCCTTSCHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred             HhHHHHHhcceEEEEech---------hhccchhcchhhhhhHHH-hcCCCHHHHHHHHHHHHHHcCCchhhhccCcccc
Confidence                11346799999996         578889999998765210 111122334577899999999964    468899


Q ss_pred             Ee---Ch-hHhHhhcCCCC
Q psy17514        144 IM---QG-RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~---q~-~ia~~l~~~p~  158 (159)
                      |+   |+ +|||+|+.+|+
T Consensus       151 SGG~~QRv~iAraL~~~P~  169 (258)
T d1b0ua_         151 SGGQQQRVSIARALAMEPD  169 (258)
T ss_dssp             CHHHHHHHHHHHHHHTCCS
T ss_pred             cHHHHHHHHHHHHHhcCCC
Confidence            88   33 99999999996

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=1.1e-30  Score=189.11  Aligned_cols=145  Identities=15%  Similarity=0.204  Sum_probs=109.8

Q ss_pred             EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      |+.|+++|+ ++|++.++|+++|     ||+++|+||||||||||+++|+|+++|++|+|.++| +++.. .......+.
T Consensus         2 M~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g-~~i~~-~~~~~~~~~   79 (254)
T d1g6ha_           2 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN-KDITN-KEPAELYHY   79 (254)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EECTT-CCHHHHHHH
T ss_pred             cceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECC-Eeccc-hhHHHHHHh
Confidence            456999999 9999999999999     799999999999999999999999999999999998 44321 111111244


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-----------EEECCEEeCHHHHHHHHHhcCccc---CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-----------YMINGSSVNPKRVSDLFSSVNLNV---NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~  142 (159)
                      .|+++||++         .+++++||.+|+.++....           ..........+++.++++.+++..   ..+..
T Consensus        80 gi~~v~Q~~---------~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  150 (254)
T d1g6ha_          80 GIVRTFQTP---------QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE  150 (254)
T ss_dssp             TEEECCCCC---------GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred             cCCccCCcc---------ccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhh
Confidence            699999986         5788899999998752100           000111122356778899999875   45678


Q ss_pred             EEe-C--h-hHhHhhcCCCC
Q psy17514        143 LIM-Q--G-RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q--~-~ia~~l~~~p~  158 (159)
                      ||+ |  + +|||+|+.+|+
T Consensus       151 LSgG~~Qrv~iAraL~~~P~  170 (254)
T d1g6ha_         151 LSGGQMKLVEIGRALMTNPK  170 (254)
T ss_dssp             SCHHHHHHHHHHHHHHTCCS
T ss_pred             CCcHHHHHHHHHHHHHhCcC
Confidence            888 3  3 99999999996

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=2.7e-30  Score=184.28  Aligned_cols=132  Identities=17%  Similarity=0.234  Sum_probs=104.9

Q ss_pred             EEEeCe-eeecCCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL   80 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~   80 (159)
                      |++ +. |+|++..+  +++    +|+++|+||||||||||+++|+|+++|++|+|.++| +++....+    .++.|+|
T Consensus         3 l~v-~~~k~~g~~~~--~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G-~~i~~~~~----~~r~ig~   74 (240)
T d2onka1           3 LKV-RAEKRLGNFRL--NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG-ADITPLPP----ERRGIGF   74 (240)
T ss_dssp             EEE-EEEEEETTEEE--EEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTTSCT----TTSCCBC
T ss_pred             EEE-EEEEEECCEEE--EEEEEeCCEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECC-EECCcCCH----HHcCcee
Confidence            466 45 88888663  454    589999999999999999999999999999999998 55432111    3467999


Q ss_pred             EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h-hHhHhh
Q psy17514         81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G-RVTKVL  153 (159)
Q Consensus        81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~-~ia~~l  153 (159)
                      +||++         .++|++||.||+.++.+.    ..+....+++.++++.++|..   .+|.+||+ |  + +|||||
T Consensus        75 v~Q~~---------~l~~~ltV~enl~~~l~~----~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral  141 (240)
T d2onka1          75 VPQDY---------ALFPHLSVYRNIAYGLRN----VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL  141 (240)
T ss_dssp             CCSSC---------CCCTTSCHHHHHHTTCTT----SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             eccch---------hhcccchhhHhhhhhhcc----cCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHH
Confidence            99985         689999999999997541    123334568999999999976   67889998 3  3 999999


Q ss_pred             cCCCC
Q psy17514        154 NMKPH  158 (159)
Q Consensus       154 ~~~p~  158 (159)
                      +.+|+
T Consensus       142 ~~~P~  146 (240)
T d2onka1         142 VIQPR  146 (240)
T ss_dssp             TTCCS
T ss_pred             hccCC
Confidence            99996

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.94  E-value=4.2e-30  Score=184.42  Aligned_cols=140  Identities=16%  Similarity=0.234  Sum_probs=104.6

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++|+ ++|++..+|+++|     |++++|+||||||||||+++|+|+++|++|+|+++| +++... +.....+..|
T Consensus         6 ~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G-~~i~~~-~~~~~~r~gi   83 (240)
T d1ji0a_           6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG-QDITNK-PAHVINRMGI   83 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EECTTC-CHHHHHHTTE
T ss_pred             EEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecc-cccccc-cHHHHHHhcc
Confidence            6999999 9999999999998     799999999999999999999999999999999998 443211 1111123458


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhc-Cccc---CCCeeEEe-Ch---hHh
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSV-NLNV---NNPHFLIM-QG---RVT  150 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~---~~~~~l~~-q~---~ia  150 (159)
                      ++++|++         .+|+++||.+|+.++....   .......+.+.++++.+ ++..   ..+..||+ |+   +||
T Consensus        84 ~~~~q~~---------~l~~~ltv~en~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iA  151 (240)
T d1ji0a_          84 ALVPEGR---------RIFPELTVYENLMMGAYNR---KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG  151 (240)
T ss_dssp             EEECSSC---------CCCTTSBHHHHHHGGGTTC---CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHH
T ss_pred             cccCccc---------ccCCcccHHHHHHHHHHhc---CCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHH
Confidence            8888874         5888999999987754311   11222234455666655 4543   45778888 33   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      |+|+.+|+
T Consensus       152 raL~~~P~  159 (240)
T d1ji0a_         152 RALMSRPK  159 (240)
T ss_dssp             HHHTTCCS
T ss_pred             HHHHhCCC
Confidence            99999996

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=3.8e-29  Score=179.14  Aligned_cols=138  Identities=13%  Similarity=0.154  Sum_probs=107.1

Q ss_pred             EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514          6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT   79 (159)
Q Consensus         6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~   79 (159)
                      |+++|+ |+|+++.+|+++|     |++++|+||||||||||+++|+|++.|++|+|.+.| +++.. .  ....++.++
T Consensus         3 I~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G-~~i~~-~--~~~~~~~i~   78 (238)
T d1vpla_           3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG-KNVVE-E--PHEVRKLIS   78 (238)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EETTT-C--HHHHHTTEE
T ss_pred             EEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECc-Eeccc-C--hHHHHhhEe
Confidence            789999 9999999999998     789999999999999999999999999999999988 33221 1  111345699


Q ss_pred             EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514         80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV  152 (159)
Q Consensus        80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~  152 (159)
                      ++||.+         .+++++|+.+|+.+...  ++........+.+..+++.++|..   ..+..+|+ |+   +||++
T Consensus        79 ~vpq~~---------~~~~~ltv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~a  147 (238)
T d1vpla_          79 YLPEEA---------GAYRNMQGIEYLRFVAG--FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA  147 (238)
T ss_dssp             EECTTC---------CCCTTSBHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred             Eeeecc---------ccCCCccHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHH
Confidence            999974         57888999999876432  111122223456778888889876   45777877 33   99999


Q ss_pred             hcCCCC
Q psy17514        153 LNMKPH  158 (159)
Q Consensus       153 l~~~p~  158 (159)
                      |+.+|+
T Consensus       148 l~~~p~  153 (238)
T d1vpla_         148 LMVNPR  153 (238)
T ss_dssp             HTTCCS
T ss_pred             HhcCCC
Confidence            999996

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.91  E-value=5.2e-27  Score=168.43  Aligned_cols=133  Identities=11%  Similarity=0.084  Sum_probs=98.5

Q ss_pred             EEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          6 MVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         6 l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      |+++|+ ++|++ ..+|+++|     +++++|+||||||||||+++|+|++.|++|+|.++| .++.....  ...++.|
T Consensus         2 le~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g-~~i~~~~~--~~~r~~i   78 (242)
T d1mv5a_           2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG-QPIDNISL--ENWRSQI   78 (242)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETT-EESTTTSC--SCCTTTC
T ss_pred             EEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECC-EEeccccH--HHHHhhe
Confidence            899999 99954 67899998     789999999999999999999999999999999998 44322111  2245679


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeEE
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFLI  144 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l~  144 (159)
                      ++|||++         .+|+. |+++|+.++..       .......+.+.++..++..              ..+..||
T Consensus        79 ~~v~Q~~---------~lf~~-ti~eNi~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LS  141 (242)
T d1mv5a_          79 GFVSQDS---------AIMAG-TIRENLTYGLE-------GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS  141 (242)
T ss_dssp             CEECCSS---------CCCCE-EHHHHTTSCTT-------SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCC
T ss_pred             EEEcccc---------ccCCc-chhhheecccc-------cccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCC
Confidence            9999996         46665 99999977633       1123344455554443321              2345677


Q ss_pred             e-Ch---hHhHhhcCCCC
Q psy17514        145 M-QG---RVTKVLNMKPH  158 (159)
Q Consensus       145 ~-q~---~ia~~l~~~p~  158 (159)
                      + |+   +|||||+.+|+
T Consensus       142 GGqkQRv~iARal~~~p~  159 (242)
T d1mv5a_         142 GGQRQRLAIARAFLRNPK  159 (242)
T ss_dssp             HHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            7 43   99999999996

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.89  E-value=2.5e-26  Score=160.78  Aligned_cols=133  Identities=15%  Similarity=0.174  Sum_probs=100.2

Q ss_pred             EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      +.|+++|+ ++|+ +++|+++|     |++++|+||||||||||+++|+|+++|++|+|.++| .++..       .+..
T Consensus         1 s~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g-~~i~~-------~~~~   71 (200)
T d1sgwa_           1 SKLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG-VPITK-------VKGK   71 (200)
T ss_dssp             CEEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EEGGG-------GGGG
T ss_pred             CeEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECC-EehhH-------hcCc
Confidence            36899999 9995 57899998     799999999999999999999999999999999988 33211       2345


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--CCCeeEEe-Ch---hHhH
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--NNPHFLIM-QG---RVTK  151 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~l~~-q~---~ia~  151 (159)
                      +++++|+.         .+++.+++.+++.+...    ..+.....+++.+.++.+++..  ..+.++|+ |+   +||+
T Consensus        72 i~~~~~~~---------~~~~~~t~~~~l~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~  138 (200)
T d1sgwa_          72 IFFLPEEI---------IVPRKISVEDYLKAVAS----LYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLAS  138 (200)
T ss_dssp             EEEECSSC---------CCCTTSBHHHHHHHHHH----HTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHH
T ss_pred             EEEEeecc---------cCCCCcCHHHHHHHHHH----hcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHH
Confidence            88888764         34456777777654321    1233344567788888888743  44567777 33   9999


Q ss_pred             hhcCCCC
Q psy17514        152 VLNMKPH  158 (159)
Q Consensus       152 ~l~~~p~  158 (159)
                      +++.+|+
T Consensus       139 al~~~~~  145 (200)
T d1sgwa_         139 TLLVNAE  145 (200)
T ss_dssp             HTTSCCS
T ss_pred             HHhcCCC
Confidence            9999996

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.4e-26  Score=163.31  Aligned_cols=132  Identities=17%  Similarity=0.184  Sum_probs=97.0

Q ss_pred             EEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514          6 MVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS   77 (159)
Q Consensus         6 l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   77 (159)
                      |+++|+ .+|+  ...+|+++|     |++++|+||||||||||+++|+|++.|++|+|+++| .++....  ....++.
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g-~~i~~~~--~~~lr~~   78 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG-HDLALAD--PNWLRRQ   78 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EETTTSC--HHHHHHH
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECC-EEecccc--hhhhhce
Confidence            789999 9994  456899998     799999999999999999999999999999999998 3432111  1123567


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-----------c---CCCeeE
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-----------V---NNPHFL  143 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~---~~~~~l  143 (159)
                      |++|+|++         .+|+ .||++|+.++..        ....+++.+.++..++.           .   .++..|
T Consensus        79 i~~v~Q~~---------~lf~-~Ti~eNi~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~L  140 (241)
T d2pmka1          79 VGVVLQDN---------VLLN-RSIIDNISLANP--------GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGL  140 (241)
T ss_dssp             EEEECSSC---------CCTT-SBHHHHHCTTST--------TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCC
T ss_pred             EEEEeccc---------ccCC-ccccccccccCc--------cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCcc
Confidence            99999996         3454 499999988642        11234444444433331           1   356788


Q ss_pred             Ee-Ch---hHhHhhcCCCC
Q psy17514        144 IM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       144 ~~-q~---~ia~~l~~~p~  158 (159)
                      |+ |+   +|||+|+.+|+
T Consensus       141 SGGq~QRvalARal~~~p~  159 (241)
T d2pmka1         141 SGGQRQRIAIARALVNNPK  159 (241)
T ss_dssp             CHHHHHHHHHHHHHTTCCS
T ss_pred             CHHHHHHHhhhhhhhcccc
Confidence            88 43   99999999996

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.3e-26  Score=163.19  Aligned_cols=134  Identities=15%  Similarity=0.139  Sum_probs=96.7

Q ss_pred             EEEEeCe-eeecCC---eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514          5 SMVLDGF-KSYGTR---VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK   75 (159)
Q Consensus         5 ~l~l~~~-~~~~~~---~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   75 (159)
                      .|+++|+ ++|++.   .+|+++|     |++++|+||||||||||+++|+|++.|++|+|.++| .++...+  ....+
T Consensus        11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g-~~i~~~~--~~~~r   87 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDG-KPLPQYE--HRYLH   87 (251)
T ss_dssp             CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EEGGGBC--HHHHH
T ss_pred             eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECC-Eecchhh--hHHHH
Confidence            4899999 999653   4789888     799999999999999999999999999999999998 4432111  11245


Q ss_pred             EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHH---------HHHHHhc--Cccc---CCCe
Q psy17514         76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRV---------SDLFSSV--NLNV---NNPH  141 (159)
Q Consensus        76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~---~~~~  141 (159)
                      +.|++|+|++         .+|+ .||++|+.++...       .......         .+.++.+  ++..   +.+.
T Consensus        88 ~~i~~v~Q~~---------~lf~-~tv~eni~~g~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~  150 (251)
T d1jj7a_          88 RQVAAVGQEP---------QVFG-RSLQENIAYGLTQ-------KPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGS  150 (251)
T ss_dssp             HHEEEECSSC---------CCCS-SBHHHHHHCSCSS-------CCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCS
T ss_pred             HHhhhccccc---------cccC-cchhhhhhhhhcc-------cchHHHHHHHHHHHHHHHHHHhccccchhhHhccCc
Confidence            6799999996         3554 4899999887431       1111121         2233333  2322   4577


Q ss_pred             eEEe-Ch---hHhHhhcCCCC
Q psy17514        142 FLIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       142 ~l~~-q~---~ia~~l~~~p~  158 (159)
                      .||+ |+   +|||+|+.+|+
T Consensus       151 ~LSGGqkQRvaiARal~~~p~  171 (251)
T d1jj7a_         151 QLSGGQRQAVALARALIRKPC  171 (251)
T ss_dssp             SSCHHHHHHHHHHHHHTTCCS
T ss_pred             cCChhHceEEEEeeccccCCc
Confidence            8888 44   99999999996

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.87  E-value=1.2e-25  Score=162.15  Aligned_cols=133  Identities=15%  Similarity=0.163  Sum_probs=100.0

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ ++|++  ..+|+++|     +++++|+||||||||||+++|.|++.|++|+|.++| .++....  ....++
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g-~~i~~~~--~~~lr~   92 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG-HNIKDFL--TGSLRN   92 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT-EEGGGSC--HHHHHH
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCC-EEcccCC--HHHhhh
Confidence            4899999 99965  46889887     799999999999999999999999999999999988 3332111  112467


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~  142 (159)
                      .|++|+|++         .+|+ .||++||.++..        ....+++.++++.+++..              +.+..
T Consensus        93 ~i~~v~Q~~---------~lf~-~Ti~eNi~~g~~--------~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~  154 (255)
T d2hyda1          93 QIGLVQQDN---------ILFS-DTVKENILLGRP--------TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK  154 (255)
T ss_dssp             TEEEECSSC---------CCCS-SBHHHHHGGGCS--------SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred             eeeeeeccc---------cCCC-CCHHHHHhccCc--------CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCC
Confidence            799999986         3454 599999988632        123456667777666532              23456


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      ||+ |+   +|||||+.+|+
T Consensus       155 LSgGq~QRi~iARal~~~p~  174 (255)
T d2hyda1         155 LSGGQKQRLSIARIFLNNPP  174 (255)
T ss_dssp             SCHHHHHHHHHHHHHHHCCS
T ss_pred             cCHHHHHHHHHHHHHhcCCC
Confidence            777 33   99999999986

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.86  E-value=6e-25  Score=158.54  Aligned_cols=134  Identities=16%  Similarity=0.174  Sum_probs=96.7

Q ss_pred             EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514          5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA   76 (159)
Q Consensus         5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   76 (159)
                      .|+++|+ ++|++  ..+|+++|     +++++|+||||||||||+++|+|++.|++|+|+++| .++... . ....+.
T Consensus        13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g-~~i~~~-~-~~~~r~   89 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG-HDLREY-T-LASLRN   89 (253)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT-EETTTB-C-HHHHHH
T ss_pred             EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECC-cccchh-h-hhhhhh
Confidence            4899999 99965  35789888     799999999999999999999999999999999988 332110 1 112356


Q ss_pred             EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcC-----------ccc---CCCee
Q psy17514         77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVN-----------LNV---NNPHF  142 (159)
Q Consensus        77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~---~~~~~  142 (159)
                      .|++++|++         .++. .|+.+|+.++..       .....+++.+.++..+           ++.   +++..
T Consensus        90 ~i~~v~Q~~---------~l~~-~ti~~n~~~~~~-------~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~  152 (253)
T d3b60a1          90 QVALVSQNV---------HLFN-DTVANNIAYART-------EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL  152 (253)
T ss_dssp             TEEEECSSC---------CCCS-SBHHHHHHTTTT-------SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCS
T ss_pred             eEEEEeecc---------ccCC-cchhhhhhhcCc-------ccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCC
Confidence            799999986         2343 378888877632       1123345555444433           322   46778


Q ss_pred             EEe-Ch---hHhHhhcCCCC
Q psy17514        143 LIM-QG---RVTKVLNMKPH  158 (159)
Q Consensus       143 l~~-q~---~ia~~l~~~p~  158 (159)
                      ||+ |+   +|||||+.+|+
T Consensus       153 LSGGqkQRvaiARal~~~p~  172 (253)
T d3b60a1         153 LSGGQRQRIAIARALLRDSP  172 (253)
T ss_dssp             SCHHHHHHHHHHHHHHHCCS
T ss_pred             cCHHHHHHHHHHHHHhcCCC
Confidence            888 43   99999999986

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.5e-21  Score=141.32  Aligned_cols=110  Identities=17%  Similarity=0.112  Sum_probs=82.3

Q ss_pred             ecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCC
Q psy17514         14 YGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKK   88 (159)
Q Consensus        14 ~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~   88 (159)
                      |.+.++|+++|     |++++|+||||||||||+++|+|++.|++|.|.++|                +|+|++|.+   
T Consensus        46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g----------------~i~~v~Q~~---  106 (281)
T d1r0wa_          46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG----------------RVSFCSQFS---  106 (281)
T ss_dssp             HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS----------------CEEEECSSC---
T ss_pred             CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC----------------EEEEEeccc---
Confidence            45678999998     799999999999999999999999999999998765                389999985   


Q ss_pred             CCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeEEe-Ch---hHh
Q psy17514         89 NCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFLIM-QG---RVT  150 (159)
Q Consensus        89 ~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l~~-q~---~ia  150 (159)
                            .+++ .||.+|+.++..         ....++.++++...+..              ..+..||+ |+   +||
T Consensus       107 ------~l~~-~tv~eni~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lA  170 (281)
T d1r0wa_         107 ------WIMP-GTIKENIIFGVS---------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA  170 (281)
T ss_dssp             ------CCCS-EEHHHHHTTTSC---------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHH
T ss_pred             ------cccC-ceeecccccccc---------ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHH
Confidence                  3555 499999987642         12233444444333211              23445777 43   999


Q ss_pred             HhhcCCCC
Q psy17514        151 KVLNMKPH  158 (159)
Q Consensus       151 ~~l~~~p~  158 (159)
                      |+|+.+|+
T Consensus       171 RaL~~~p~  178 (281)
T d1r0wa_         171 RAVYKDAD  178 (281)
T ss_dssp             HHHHSCCS
T ss_pred             HHHHhCcc
Confidence            99999996

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=5.1e-18  Score=129.11  Aligned_cols=145  Identities=31%  Similarity=0.534  Sum_probs=96.1

Q ss_pred             eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-----------
Q psy17514          2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-----------   70 (159)
Q Consensus         2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-----------   70 (159)
                      ++..|+++||++|.+.+.+.-.++++++|+|||||||||+|+||+++++.....+|...+.++++.+..           
T Consensus         2 ki~~l~l~NFks~~~~~~i~f~~~~l~~i~G~NGsGKS~ileAi~~~lg~~~~~~R~~~~~dli~~g~~~~~~~~~~~~~   81 (427)
T d1w1wa_           2 RLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYRGVLNDENSDDYDNE   81 (427)
T ss_dssp             CEEEEEEESCSSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---------CGGGSCCC-------------
T ss_pred             eEEEEEEeCeeeeCCCEEEeCCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccccccchhheecCCcCCcceEEEEee
Confidence            477899999999987654432236899999999999999999999987544333333322222221100           


Q ss_pred             ----CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeC
Q psy17514         71 ----AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQ  146 (159)
Q Consensus        71 ----~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q  146 (159)
                          .......+...+++.           ....++.+.+...+...|++|++.+..+++.+++..+++...++..++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~-----------~~~i~i~r~i~~~~~~~~~in~~~~~~~~i~~~~~~~~~~~~~~~~~i~q  150 (427)
T d1w1wa_          82 GAASSNPQSAYVKAFYQKG-----------NKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQ  150 (427)
T ss_dssp             ------CCEEEEEEEEEET-----------TEEEEEEEEEETTSCEEEEETTEEECHHHHHHHHHHTTCCTTTCTTEECT
T ss_pred             ccccccccccceeeeeccC-----------CcEEEEEEEEccCCceeEecCcccccHHHHHHHHHHcCCCCCCccceech
Confidence                001122233333331           22356777777766677889999998889999999999998888888889


Q ss_pred             hhHhHhhcCCC
Q psy17514        147 GRVTKVLNMKP  157 (159)
Q Consensus       147 ~~ia~~l~~~p  157 (159)
                      |.+..++.+.|
T Consensus       151 ~~~~~~~~~~~  161 (427)
T d1w1wa_         151 GDVEQIAAQSP  161 (427)
T ss_dssp             TCTTHHHHSCH
T ss_pred             hhhhhhhhccc
Confidence            97777776655

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1e-20  Score=134.61  Aligned_cols=127  Identities=14%  Similarity=0.143  Sum_probs=83.4

Q ss_pred             EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514          5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV   78 (159)
Q Consensus         5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i   78 (159)
                      .|+++++ ++|.    |.++|     |++++|+||||||||||+++|+|+. +++|+|++.| +++.....  .......
T Consensus         3 il~~~dv~~~~~----l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g-~~i~~~~~--~~~~~~~   74 (231)
T d1l7vc_           3 VMQLQDVAESTR----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAG-QPLEAWSA--TKLALHR   74 (231)
T ss_dssp             EEEEEEECCTTT----SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESS-SBGGGSCH--HHHHHHE
T ss_pred             EEEEECcccCce----ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECC-EECCcCCH--HHHHhhc
Confidence            4788998 6652    44554     8999999999999999999999975 5789999988 44321110  1123346


Q ss_pred             EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h-hHhH
Q psy17514         79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G-RVTK  151 (159)
Q Consensus        79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~-~ia~  151 (159)
                      ++++|...         .....++.+++.+...       .....+.+.++++.+++..   .++..||+ |  + +||+
T Consensus        75 ~~~~~~~~---------~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~  138 (231)
T d1l7vc_          75 AYLSQQQT---------PPFATPVWHYLTLHQH-------DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAA  138 (231)
T ss_dssp             EEECSCCC---------CCSSCBHHHHHHHHCS-------CTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHH
T ss_pred             eeeecccc---------CCccccHHHHhhhccc-------hhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHH
Confidence            77777632         1112244444433221       1233567888999999876   45678887 3  3 8999


Q ss_pred             hhcC
Q psy17514        152 VLNM  155 (159)
Q Consensus       152 ~l~~  155 (159)
                      +++.
T Consensus       139 al~~  142 (231)
T d1l7vc_         139 VVLQ  142 (231)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9875

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=1.7e-16  Score=116.36  Aligned_cols=145  Identities=33%  Similarity=0.570  Sum_probs=94.6

Q ss_pred             CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcc-cchhhhhHHHHHHhh--CCCceeEEE
Q psy17514          1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQV-KQVRANTLQELIYKN--GQAGVTKAS   77 (159)
Q Consensus         1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~-g~i~~~~~~~~~~~~--~~~~~~~~~   77 (159)
                      |++++|+++||++|.+.+. .+++..+++|+|||||||||+|+||++++.... ..++.....+.+...  .........
T Consensus         1 M~I~~i~I~NFksf~~~~~-i~f~~~lnvlvG~NgsGKS~iL~Ai~~~lg~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~   79 (308)
T d1e69a_           1 MRLKKLYLKGFKSFGRPSL-IGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAY   79 (308)
T ss_dssp             CEEEEEEEESBTTBCSCEE-EECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEE
T ss_pred             CeEEEEEEECeEEECCCEE-EeCCCCeEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccccceecccccccchhhhhh
Confidence            8999999999999977653 357778999999999999999999999875431 112211111111000  111223455


Q ss_pred             EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514         78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP  157 (159)
Q Consensus        78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p  157 (159)
                      +...|++.           ..+.++.+.+.......|.+++.....+.+.+.+...++..+.+ .+..++.+..++...|
T Consensus        80 v~l~~~~~-----------~~e~~i~r~i~~~~~~~~~~n~~~~~~~~i~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~  147 (308)
T d1e69a_          80 VELVFEEN-----------GEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFY-SIVGQGQIDRIVNASP  147 (308)
T ss_dssp             EEEEEESS-----------SCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCC-SEEEHHHHHHHHTC--
T ss_pred             hheeeecc-----------CCcceEEEEEeccCCceEEECCcEeeHHHHHHHHHHhCCCCCCe-EEeccchhhhHhhCCc
Confidence            77777653           23467888888777777888998888888888888777765444 3556666666665555


Q ss_pred             C
Q psy17514        158 H  158 (159)
Q Consensus       158 ~  158 (159)
                      +
T Consensus       148 ~  148 (308)
T d1e69a_         148 E  148 (308)
T ss_dssp             -
T ss_pred             h
Confidence            4

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=2.3e-13  Score=93.13  Aligned_cols=49  Identities=24%  Similarity=0.365  Sum_probs=42.4

Q ss_pred             eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514          2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus         2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      ++.+|+|.||++|.+.+  .+++..+++|+|||||||||+|+||..++.+.
T Consensus         3 kl~~l~l~Nf~~~~~~~--i~f~~~~tvi~G~NGsGKStil~Ai~~~L~g~   51 (222)
T d1qhla_           3 KFRSLTLINWNGFFART--FDLDELVTTLSGGNGAGKSTTMAAFVTALIPD   51 (222)
T ss_dssp             EEEEEEEEEETTEEEEE--ECHHHHHHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred             eeeEEEEECccCEeeEE--EEcCCCeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            47789999998887765  46777899999999999999999999988654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.96  E-value=1.1e-10  Score=78.25  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGIQVKQVRANT   60 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~   60 (159)
                      ++|+||||||||||+++|++.++++.|.+...+
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~   35 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE   35 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEEECC
Confidence            589999999999999999999999988887765

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=5.1e-07  Score=59.16  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+|++|||||||++.|..-+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999986543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=8.4e-07  Score=59.34  Aligned_cols=25  Identities=16%  Similarity=0.268  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      |.+++|+||+|||||||.+.|.--.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            5788999999999999999987554

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.06  E-value=1.1e-06  Score=57.73  Aligned_cols=28  Identities=25%  Similarity=0.475  Sum_probs=23.8

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         23 FDREFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        23 ~~~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..|.+++|+||+||||||+.+.|+-.++
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4578899999999999999999976543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=8.8e-07  Score=58.46  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=23.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCcc
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQV   53 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~~   53 (159)
                      .+.|+||+|+|||||++.++..+....
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~   29 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            468999999999999999998775543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.97  E-value=1.3e-06  Score=60.43  Aligned_cols=33  Identities=33%  Similarity=0.576  Sum_probs=23.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVR   57 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~   57 (159)
                      +..++++|+||+|||||+++|.+-.....|+++
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            678999999999999999999765544455554

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.96  E-value=1.8e-06  Score=56.73  Aligned_cols=26  Identities=12%  Similarity=0.206  Sum_probs=21.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      .+++|+|++|||||||++.|...+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            36799999999999999988766543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.88  E-value=3.1e-06  Score=55.75  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..++|+||.|||||||.++|+--++
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4579999999999999999987654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=4.7e-06  Score=54.47  Aligned_cols=26  Identities=23%  Similarity=0.491  Sum_probs=23.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..+++|+|++||||||+.+.|+--+.
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            56789999999999999999987764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.86  E-value=9.3e-07  Score=61.48  Aligned_cols=35  Identities=26%  Similarity=0.528  Sum_probs=21.8

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514         24 DREFNAITGLNGTGKSNILDGICFVLGIQVKQVRA   58 (159)
Q Consensus        24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~   58 (159)
                      .+..++++|+||+|||||+++|.+-.....|+|+-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence            46789999999999999999997655444555553

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.83  E-value=5e-06  Score=53.38  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=18.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      .+++|.|++||||||+.+.|.-
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999998753

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=5.4e-06  Score=56.61  Aligned_cols=24  Identities=17%  Similarity=0.383  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      |.+++|+||+|+|||||.+.|.--
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            567899999999999999988644

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.81  E-value=8.3e-06  Score=53.29  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=23.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      ..++.|.|++||||||+.+.|+-.++.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~   29 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            457889999999999999999988763

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.80  E-value=7e-06  Score=53.41  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+||+||||||+.+.|+-.++
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            578999999999999999987654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=6.5e-06  Score=53.02  Aligned_cols=24  Identities=29%  Similarity=0.256  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .++|+||+||||||+-+.|+-.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            468999999999999999987664

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=7e-06  Score=54.99  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+||+|||||||++.|.--.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6899999999999999986543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.75  E-value=7.2e-06  Score=53.45  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++|+||.||||||+.+.|+--+.
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            57999999999999999976554

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.74  E-value=9.4e-06  Score=54.06  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|.|++|||||||.+.|.-.+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            678999999999999999976543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.73  E-value=9.6e-06  Score=53.39  Aligned_cols=25  Identities=20%  Similarity=0.199  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .+++|.|+.||||||+.+.|+-.+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999976654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.73  E-value=8.3e-06  Score=56.25  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      +++|+|+.|||||||++.|..-
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            5789999999999999999753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=9.5e-06  Score=54.09  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .+++|+||+|+|||||++.|.--
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            46799999999999999988743

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.70  E-value=9.5e-06  Score=53.02  Aligned_cols=24  Identities=38%  Similarity=0.418  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .++|+||+||||||+.+.|+--+.
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999986553

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=9.9e-06  Score=54.46  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+||+|||||||.+.|.--
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            689999999999999998654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.67  E-value=8.9e-06  Score=54.56  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++|+|+.|+|||||+++|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4899999999999999999864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.66  E-value=1.2e-05  Score=52.58  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      |-++.|+|++||||||+-++|+-.+
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567799999999999999998554

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.3e-05  Score=52.74  Aligned_cols=23  Identities=35%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++++|+|..++|||||+++|.+.
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.59  E-value=1.3e-05  Score=53.05  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++|+|+.++|||||+++|.+-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=2.1e-05  Score=52.93  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++|+|+.+||||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.56  E-value=1.6e-05  Score=52.10  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++|+|+.|+|||||++.|++-
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999763

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.56  E-value=1.6e-05  Score=52.47  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++++|+|+.|+|||||++.|.+.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.55  E-value=2.3e-05  Score=50.60  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|..|||||||++.+.+-
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.55  E-value=2.4e-05  Score=50.21  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||++.+.+-.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5799999999999999997654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.55  E-value=2.5e-05  Score=53.98  Aligned_cols=24  Identities=38%  Similarity=0.497  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ..+..|+|||.+||||+|+.+...
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhHHH
Confidence            568999999999999999998654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=2.4e-05  Score=50.14  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|++++|||||++.+.+-
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999998874

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.54  E-value=2.7e-05  Score=51.33  Aligned_cols=24  Identities=33%  Similarity=0.599  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|.|++||||||+.+.|+-.+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999987663

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.8e-05  Score=52.77  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|.|++||||||+-+.|.-.+.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            679999999999999999876653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.52  E-value=2.5e-05  Score=52.21  Aligned_cols=26  Identities=23%  Similarity=0.267  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +-+++|+||.||||||+-+.|+--+.
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            34789999999999999999876543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=2.1e-05  Score=52.16  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||+++|.+-
T Consensus        11 V~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            689999999999999999864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.50  E-value=3.4e-05  Score=50.28  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      ++|+|+.||||||+-++|+-.+..
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            578999999999999999877643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.3e-05  Score=50.67  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.++|||||+++|++.
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            589999999999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.49  E-value=2.2e-05  Score=51.56  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      -++|+|++|||||||++.+.+
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            368999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=1.7e-05  Score=52.79  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      |-++.|+|++||||||+-+.|+-.+
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999997654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.47  E-value=3.5e-05  Score=53.79  Aligned_cols=27  Identities=19%  Similarity=0.134  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +..+.|.||+|||||||.++|+.-+..
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            345789999999999999999988754

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3.7e-05  Score=53.38  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ..+..|+|||.+||||+|+.++..
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHH
Confidence            357899999999999999998654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=3.5e-05  Score=51.60  Aligned_cols=26  Identities=15%  Similarity=0.123  Sum_probs=22.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..+++|+||.||||||+-+.|+--+.
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999987654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.42  E-value=5.1e-05  Score=49.71  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      .++|+|++||||||+-+.|+--+..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~   28 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGY   28 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4578999999999999999866543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.42  E-value=3.8e-05  Score=51.17  Aligned_cols=24  Identities=21%  Similarity=0.109  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .++|+||.||||||+.+.|+--+.
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999976554

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=4.5e-05  Score=50.37  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~   46 (159)
                      +.++.++|++||||||+.+.+.
T Consensus        14 p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            6899999999999999988774

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=5e-05  Score=55.27  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -.++|+||.|||||||++.|...+
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHH
Confidence            468999999999999999997554

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=5.9e-05  Score=49.14  Aligned_cols=24  Identities=38%  Similarity=0.625  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      ++|+|+.||||||+-+.|+--+..
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~   27 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGV   27 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            568899999999999999876643

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=5.2e-05  Score=50.92  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -+++++|.+|+||||+.+.|+--+
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999998544

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.36  E-value=3.4e-05  Score=51.13  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.++|||||+++|++.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999998653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.36  E-value=3.9e-05  Score=55.79  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=22.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      +.|.|+.||||||+|++|...+++.
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~~~  193 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIPKE  193 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             EEEEeeccccchHHHHHHhhhcccc
Confidence            6899999999999999999887765

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.35  E-value=2e-05  Score=52.12  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|..++|||||+++|++.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999754

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.35  E-value=5.4e-05  Score=49.83  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++|+||.||||||+-+.|+--+.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            57999999999999999976554

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=6e-05  Score=50.25  Aligned_cols=24  Identities=25%  Similarity=0.236  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|+||.||||||.-+.|+--+.
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999976543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=7.7e-05  Score=51.65  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=23.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      ....|.||+|+||||+.++|+..+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~~~   79 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELGYD   79 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            467899999999999999999876543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.29  E-value=2e-05  Score=50.90  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.++|||||+++|+|-.
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5899999999999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.28  E-value=4.9e-05  Score=49.32  Aligned_cols=20  Identities=30%  Similarity=0.401  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+.+
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            57999999999999999865

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.28  E-value=6.9e-05  Score=49.89  Aligned_cols=21  Identities=33%  Similarity=0.344  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +++|+|+.||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            679999999999999998853

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.27  E-value=6.2e-05  Score=49.20  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|..|||||||++.|.+-
T Consensus        18 I~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          18 VIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999998764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=7.6e-05  Score=50.26  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.|+|||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3689999999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.27  E-value=8.3e-05  Score=49.69  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.++.|+||.||||||+-+.|+--+.
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999999976554

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.24  E-value=8e-05  Score=51.03  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ....|.||+|+||||+.++|+-.+
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            346899999999999999998654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.23  E-value=4.8e-05  Score=50.82  Aligned_cols=24  Identities=25%  Similarity=0.151  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -+++|-|+.||||||+++.|+--+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999997554

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.22  E-value=9.9e-05  Score=47.85  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+..-
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            579999999999999988653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.21  E-value=9.2e-05  Score=48.90  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      ++|+||.||||||+-+.|+--+..
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g~   26 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYGT   26 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Confidence            679999999999999999866643

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=9.3e-05  Score=50.66  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ...|.||+|+||||+.++++--+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            36899999999999999998653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.20  E-value=7.9e-05  Score=52.29  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .++|+|.+|+|||||+++|.|-
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4689999999999999999874

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.19  E-value=8.6e-05  Score=49.07  Aligned_cols=21  Identities=19%  Similarity=0.196  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+..||||||+++|.+.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            699999999999999999853

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.00011  Score=47.83  Aligned_cols=21  Identities=24%  Similarity=0.135  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++++|+.|+|||||++.+..-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            589999999999999988754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00011  Score=48.39  Aligned_cols=23  Identities=22%  Similarity=0.105  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++|+||.||||||..+.|+--+.
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999975543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00013  Score=47.71  Aligned_cols=21  Identities=24%  Similarity=0.324  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            589999999999999998753

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00013  Score=47.38  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+.+-
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999988753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.00012  Score=48.24  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++|+||.||||||+-+.|+--+.
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            57999999999999999976654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=5.6e-05  Score=49.61  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -++|+|+.++|||||+++|.+.
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999998653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.12  E-value=0.00013  Score=49.35  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~   46 (159)
                      +++|+|+.||||||+.+.+.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999998874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00014  Score=47.14  Aligned_cols=21  Identities=29%  Similarity=0.249  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++++|++|+|||||++.++.-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999999988753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.12  E-value=0.00018  Score=48.85  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=19.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +.+++++||+|+||||.+-=|+..+
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5788999999999999966555433

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.10  E-value=0.00018  Score=49.33  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=22.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      -..|.||.|+||||+.++|+.-+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~   62 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTN   62 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCC
Confidence            36799999999999999999877654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.09  E-value=0.00017  Score=52.32  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -.++|+|+.|||||||++.+...
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHH
Confidence            46899999999999999999754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.00015  Score=47.83  Aligned_cols=23  Identities=17%  Similarity=0.192  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++|+||.||||||+.+.|+--+.
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56889999999999999976543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00017  Score=47.29  Aligned_cols=20  Identities=35%  Similarity=0.494  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            58999999999999998865

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.08  E-value=0.00016  Score=49.38  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=19.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      +.+++++||+|+||||.+-=|+..
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999986655433

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.07  E-value=0.00017  Score=49.50  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +++|+|+..||||||+++|.+..
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc
Confidence            58999999999999999998764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00019  Score=48.85  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=20.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +.+++++||+|+||||.+-=|+..+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999877666444

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00016  Score=48.82  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +++|.||.||||||+-+.|+--+..
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl   29 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQW   29 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            7889999999999999999866653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.07  E-value=0.00019  Score=49.35  Aligned_cols=26  Identities=31%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      .-+.|.||.|+||||+.++++.-+..
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~   61 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGV   61 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34679999999999999999987654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00018  Score=51.78  Aligned_cols=25  Identities=24%  Similarity=0.207  Sum_probs=22.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -+++|.|++||||||+-+.|.-++.
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            4789999999999999999988774

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.06  E-value=0.0002  Score=48.62  Aligned_cols=25  Identities=24%  Similarity=0.490  Sum_probs=20.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..+++++||+|+||||.+-=|+..+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999877776544

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.04  E-value=0.00018  Score=48.76  Aligned_cols=25  Identities=32%  Similarity=0.337  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +++|-||.||||||+-+.|+--+..
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~   29 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGF   29 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3578899999999999999876654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00019  Score=46.85  Aligned_cols=21  Identities=33%  Similarity=0.275  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+..-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            579999999999999987643

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.03  E-value=0.00018  Score=47.77  Aligned_cols=23  Identities=17%  Similarity=0.226  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++|+||.||||||+-+.|+--+.
T Consensus         6 iil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56899999999999999984443

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00019  Score=46.74  Aligned_cols=20  Identities=25%  Similarity=0.253  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999998765

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.03  E-value=0.0001  Score=52.58  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +++|.|++||||||+.++|.-.+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            789999999999999998876653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00014  Score=54.31  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+.|+|||||+++|.|.-
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998853

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.0002  Score=46.30  Aligned_cols=20  Identities=25%  Similarity=0.519  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57999999999999998764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00022  Score=46.21  Aligned_cols=20  Identities=30%  Similarity=0.273  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+..
T Consensus         7 v~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            58999999999999998765

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.99  E-value=0.0002  Score=47.75  Aligned_cols=24  Identities=29%  Similarity=0.355  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -++|+||.||||||+-+.|+--+.
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHC
Confidence            367999999999999999986543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.98  E-value=0.00034  Score=48.33  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..+.|.||.|+||||++++|+-.+.
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHh
Confidence            5678999999999999999987764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00024  Score=46.28  Aligned_cols=20  Identities=20%  Similarity=0.337  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            58999999999999999875

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.97  E-value=0.00018  Score=49.07  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=15.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +.+++++||+|+||||.+-=|+..+
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5678999999999999866555433

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00024  Score=46.01  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|+.|+|||||++.+..-
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            589999999999999988653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.96  E-value=0.00021  Score=46.62  Aligned_cols=20  Identities=25%  Similarity=0.499  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++++|+.|+|||||++.+.+
T Consensus        19 I~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68999999999999998854

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.96  E-value=0.00027  Score=49.20  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.|.||.|+|||++.++|+.....
T Consensus        43 vLL~GppGtGKT~la~alA~~~~~   66 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEESNF   66 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECcCCCCHHHHHHHHhhcccc
Confidence            579999999999999999987643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.95  E-value=0.00025  Score=49.08  Aligned_cols=25  Identities=32%  Similarity=0.302  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +.++.|+||.|+|||||++.++--.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            5688899999999999999876443

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00025  Score=47.98  Aligned_cols=20  Identities=35%  Similarity=0.544  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~   46 (159)
                      +++|+|..||||||+.+.+.
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            68999999999999999876

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00028  Score=47.59  Aligned_cols=25  Identities=28%  Similarity=0.493  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      |.+++|-|+-||||||+.+.|.-.+
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999987543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00027  Score=45.64  Aligned_cols=21  Identities=14%  Similarity=0.332  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|..|+|||||++.+..-
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            589999999999999988653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.93  E-value=0.00027  Score=50.76  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.-+.++||+|+|||.|.++|+..+.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccc
Confidence            34567899999999999999998864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0003  Score=49.26  Aligned_cols=26  Identities=23%  Similarity=0.216  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      .-+.|.||.|+|||++.++|+..+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~~   71 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAKV   71 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcCC
Confidence            34679999999999999999987754

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.91  E-value=0.00028  Score=46.50  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            58999999999999998875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00029  Score=45.61  Aligned_cols=21  Identities=33%  Similarity=0.311  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|..|+|||||++.+..-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            589999999999999988653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.90  E-value=0.00028  Score=47.25  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +++|-|.-||||||+++.|.--+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999987544

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0003  Score=46.06  Aligned_cols=21  Identities=24%  Similarity=0.072  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|.+|+|||||+..+..-
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999999887653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.88  E-value=0.00034  Score=48.73  Aligned_cols=26  Identities=15%  Similarity=0.203  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      -+.|.||.|+|||++.++|+..+...
T Consensus        44 giLl~GppGtGKT~la~aia~~~~~~   69 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEARVP   69 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             eEEEecCCCCChhHHHHHHHHHcCCC
Confidence            36899999999999999999877543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00032  Score=45.47  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            58999999999999998864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00029  Score=45.74  Aligned_cols=20  Identities=30%  Similarity=0.396  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            57999999999999988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00029  Score=46.43  Aligned_cols=20  Identities=25%  Similarity=0.187  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            57999999999999998763

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00039  Score=46.20  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +.++.|.||+|+|||||.-.++.
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999999776654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00036  Score=47.47  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..|.||.|+||||+.++++..+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            57899999999999999876553

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00034  Score=45.08  Aligned_cols=21  Identities=19%  Similarity=0.270  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|..|+|||||++.+..-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999999988653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.85  E-value=0.00032  Score=47.58  Aligned_cols=23  Identities=26%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +-++-|+|.+|||||||-+.|.-
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00025  Score=48.83  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -..|.||.|+||||+.++++--+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            35799999999999999997654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.82  E-value=0.00021  Score=47.02  Aligned_cols=19  Identities=42%  Similarity=0.616  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~   46 (159)
                      ++|+|+.|+|||||++.+.
T Consensus        20 I~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            5799999999999999874

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0004  Score=47.02  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      |-+++|-|+-||||||+.+.|.--+
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578889999999999999887654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00038  Score=45.53  Aligned_cols=21  Identities=33%  Similarity=0.295  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++++|..|+|||||++.+.+-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998763

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00039  Score=45.04  Aligned_cols=20  Identities=20%  Similarity=0.340  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            47999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00031  Score=45.66  Aligned_cols=20  Identities=25%  Similarity=0.194  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+.+
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            57999999999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00039  Score=45.34  Aligned_cols=20  Identities=25%  Similarity=0.416  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            58999999999999988764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.80  E-value=0.00043  Score=51.56  Aligned_cols=25  Identities=32%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .+++.|.||.||||||+|.++...+
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhh
Confidence            4789999999999999999986554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.00046  Score=46.84  Aligned_cols=25  Identities=28%  Similarity=0.319  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      |-+++|-|+-||||||+.+.|.--+
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L   27 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKL   27 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHH
Confidence            5688999999999999999997554

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00044  Score=45.05  Aligned_cols=20  Identities=35%  Similarity=0.385  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00038  Score=48.93  Aligned_cols=25  Identities=20%  Similarity=0.097  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      -+.|.||+|+|||+|.++|+..+..
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~~~~   67 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANECQA   67 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCcchhHHHHHHHHhCC
Confidence            4669999999999999999987643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00045  Score=44.84  Aligned_cols=20  Identities=35%  Similarity=0.361  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+..
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            57999999999999998875

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00044  Score=46.02  Aligned_cols=20  Identities=30%  Similarity=0.296  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            58999999999999998864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00039  Score=47.25  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..|.||.|+||||+.++|+.-+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            5799999999999999998654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00048  Score=48.13  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      +.|.||.|+|||++.++++.....
T Consensus        41 iLL~GppGtGKT~l~~ala~~~~~   64 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANETGA   64 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             eEEecCCCCCchHHHHHHHHHhCC
Confidence            578999999999999999987644

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00046  Score=45.40  Aligned_cols=20  Identities=20%  Similarity=0.242  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+..
T Consensus         8 ivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999998764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00018  Score=49.21  Aligned_cols=24  Identities=21%  Similarity=0.178  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .+++|-|+-||||||+++.|+-.+
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999997654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00046  Score=45.03  Aligned_cols=20  Identities=25%  Similarity=0.253  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+..
T Consensus         9 v~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.00048  Score=44.67  Aligned_cols=21  Identities=24%  Similarity=0.197  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|..|+|||||++.+..-
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999999987653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00053  Score=44.51  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++++|..|+|||||+..+..-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            589999999999999987643

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.69  E-value=0.0003  Score=45.89  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|++|+|||||++.+..
T Consensus        15 IvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            57999999999999998753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.64  E-value=0.00053  Score=46.62  Aligned_cols=22  Identities=32%  Similarity=0.306  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +.|.||+|+|||.|+.+++--.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6899999999999999997654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00042  Score=45.19  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|..|+|||||++.+.+.
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999999988754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00062  Score=44.02  Aligned_cols=21  Identities=24%  Similarity=0.237  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|..|+|||||++.+..-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            589999999999999987643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.63  E-value=0.00036  Score=50.44  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=22.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGI   51 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~   51 (159)
                      .-+.|+|+.|+|||||.++++.++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            44688999999999999999999854

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.00063  Score=44.19  Aligned_cols=20  Identities=25%  Similarity=0.265  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++++|..|+|||||++.+..
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57899999999999998765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00065  Score=44.04  Aligned_cols=20  Identities=25%  Similarity=0.270  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|+.|+|||||++.+..
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.00031  Score=45.85  Aligned_cols=20  Identities=25%  Similarity=0.275  Sum_probs=8.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            58999999999999998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00036  Score=45.42  Aligned_cols=20  Identities=25%  Similarity=0.338  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++++|+.|+|||||++.+..
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            58999999999999987643

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.58  E-value=0.00038  Score=48.33  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +.|.||.|+||||++++++-.+
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            3456999999999999998654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.58  E-value=0.00064  Score=44.64  Aligned_cols=20  Identities=20%  Similarity=0.260  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+..
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57999999999999987754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.58  E-value=0.00072  Score=43.85  Aligned_cols=20  Identities=25%  Similarity=0.408  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            58999999999999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00072  Score=44.56  Aligned_cols=20  Identities=20%  Similarity=0.257  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            58999999999999988754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00076  Score=44.23  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++++|..|+|||||++.+..-
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            589999999999999987653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.51  E-value=0.0011  Score=42.82  Aligned_cols=28  Identities=25%  Similarity=0.342  Sum_probs=24.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      +.+++|.|+=||||||+.+.++-.++..
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            5689999999999999999998777543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.50  E-value=0.0012  Score=43.29  Aligned_cols=27  Identities=19%  Similarity=0.246  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514         28 NAITGLNGTGKSNILDGICFVLGIQVK   54 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~~~~g   54 (159)
                      ++|+|..|+|||||++-+..-..|+.|
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence            589999999999999987655555543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.49  E-value=0.00077  Score=45.86  Aligned_cols=19  Identities=26%  Similarity=0.385  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~   46 (159)
                      +.|+|.+|+|||||++-+.
T Consensus         9 illlG~~~vGKTsll~~~~   27 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            5899999999999999874

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.00073  Score=44.68  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|..|+|||||++-+....
T Consensus         5 ivllG~~~vGKTsll~r~~f~~   26 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMRIIH   26 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5799999999999999986544

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.001  Score=47.29  Aligned_cols=23  Identities=30%  Similarity=0.212  Sum_probs=19.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      =+++|-|+.|||||||-..|.-.
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeECCCCCCHHHHHHHHHHH
Confidence            47899999999999998877433

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=96.45  E-value=0.001  Score=46.82  Aligned_cols=23  Identities=26%  Similarity=0.609  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++|+|+.|+|||||.++|.....
T Consensus         5 v~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           5 VALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Confidence            58999999999999999965543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00093  Score=44.19  Aligned_cols=20  Identities=20%  Similarity=0.242  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++|+|..|+|||||++.+..
T Consensus         6 vvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            58999999999999988764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.43  E-value=0.00077  Score=44.87  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|.-.+|||||+++|.+..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            5899999999999999998643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.40  E-value=0.0011  Score=44.54  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+-++|||||+++|.+..
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHh
Confidence            5899999999999999996554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.39  E-value=0.001  Score=50.05  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.-+.++||+|+|||-|.+.|+.++.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhC
Confidence            45578999999999999999999873

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.001  Score=45.48  Aligned_cols=26  Identities=19%  Similarity=0.110  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.+++|-|+-||||||+++.|.--+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            35789999999999999999986543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.30  E-value=0.0013  Score=44.82  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +.++.|.|++|+|||+|..-++.
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            57899999999999999776643

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.28  E-value=0.0014  Score=45.78  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      |++++|.|++|+|||||+.-++.
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            68999999999999999877764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.27  E-value=0.0015  Score=43.00  Aligned_cols=25  Identities=32%  Similarity=0.218  Sum_probs=19.5

Q ss_pred             cCCCCeEEEEcCCCCcHHHHHHHHH
Q psy17514         22 DFDREFNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        22 ~~~~~~~~liG~NGaGKSTLl~~i~   46 (159)
                      .+.+.=+.|.|++|+||||+.-.+.
T Consensus        11 ~~~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          11 DIYGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHH
Confidence            3456667899999999999876543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.27  E-value=0.0015  Score=46.17  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++|+|+.|||||||.++|.....
T Consensus         9 i~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           9 IGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcC
Confidence            59999999999999999965544

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.0012  Score=44.67  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=18.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~   46 (159)
                      +.++.|.||.|+|||||.--++
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Confidence            5789999999999999976553

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0019  Score=44.89  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      +.++.|.|+.|+|||||+-.|+..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            688999999999999999887654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.15  E-value=0.0019  Score=42.58  Aligned_cols=23  Identities=26%  Similarity=0.150  Sum_probs=18.5

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHH
Q psy17514         23 FDREFNAITGLNGTGKSNILDGI   45 (159)
Q Consensus        23 ~~~~~~~liG~NGaGKSTLl~~i   45 (159)
                      +.+.=+.|.|++|+||||+.-.+
T Consensus        13 ~~g~gvli~G~sG~GKS~lal~l   35 (177)
T d1knxa2          13 VFGVGVLLTGRSGIGKSECALDL   35 (177)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHH
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHH
Confidence            44666789999999999997554

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.14  E-value=0.0015  Score=46.36  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|..-+|||||+++|++.-
T Consensus        13 iGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          13 TGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             EEEEECSSSSHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            7999999999999999999764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.14  E-value=0.0019  Score=43.49  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=18.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGI   45 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i   45 (159)
                      ++++.|.|++|+|||+|.--+
T Consensus        26 G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHH
Confidence            689999999999999997543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0013  Score=44.84  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++.|.|.=||||||||+-+.-
T Consensus         5 v~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEeeCCCCCHHHHHHHHHh
Confidence            578999999999999887643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0021  Score=46.12  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ..+.++||+|+|||.|.++|+-.+.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCcchhHHHHHHHHhhcc
Confidence            3678999999999999999998874

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.0017  Score=42.60  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|..|+|||||+..+..-
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            579999999999999988544

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.07  E-value=0.0014  Score=46.59  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -++++|.-.||||||+++|.|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.05  E-value=0.0023  Score=41.81  Aligned_cols=24  Identities=33%  Similarity=0.219  Sum_probs=18.8

Q ss_pred             cCCCCeEEEEcCCCCcHHHHHHHH
Q psy17514         22 DFDREFNAITGLNGTGKSNILDGI   45 (159)
Q Consensus        22 ~~~~~~~~liG~NGaGKSTLl~~i   45 (159)
                      .+++.=+.|.|++|+||||+.-.+
T Consensus        12 ~~~g~gvli~G~sg~GKS~la~~l   35 (169)
T d1ko7a2          12 DVYGVGVLITGDSGIGKSETALEL   35 (169)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHH
Confidence            345666789999999999986444

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.04  E-value=0.0019  Score=43.75  Aligned_cols=23  Identities=26%  Similarity=0.657  Sum_probs=20.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      ++++.|.|++|+|||||.--++.
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            57899999999999999777754

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.03  E-value=0.0015  Score=46.23  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -++++|.-.||||||+++|.|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999865

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.00  E-value=0.0021  Score=43.89  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +++|+|+-||||||+.+.|.-
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.99  E-value=0.002  Score=43.96  Aligned_cols=21  Identities=19%  Similarity=0.452  Sum_probs=17.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGI   45 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i   45 (159)
                      +.++.|.||+|+|||||.--+
T Consensus        36 G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHH
Confidence            468999999999999996544

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.97  E-value=0.0026  Score=42.51  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++++|.-++|||||+++|.+.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~~   28 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKILA   28 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHH
Confidence            58999999999999999987653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.91  E-value=0.0028  Score=46.37  Aligned_cols=28  Identities=14%  Similarity=0.269  Sum_probs=24.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      ...+++.||.|+|||++..+|+..+...
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~~~~~  181 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLELCGGK  181 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            4578999999999999999999988754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0023  Score=43.52  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=18.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~   46 (159)
                      +.++.|.|++|+|||+|.-.++
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999976654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0026  Score=42.55  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .-..|+||.|.|||++++.++.-+
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            346899999999999999998654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0031  Score=44.25  Aligned_cols=23  Identities=26%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      .-..|+||.|+|||++++.++..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            44679999999999999999864

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.80  E-value=0.002  Score=46.10  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|..-+|||||+++|++..
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            6899999999999999999763

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.70  E-value=0.0026  Score=42.59  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|.=.+|||||++.|.+..
T Consensus        11 i~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          11 IGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEccCCcHHHHHHHHHhhh
Confidence            6899999999999999997643

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0022  Score=45.26  Aligned_cols=24  Identities=33%  Similarity=0.344  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      -+++|+||-++||||||+.|.+..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            367899999999999999987643

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.65  E-value=0.0035  Score=43.98  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|||-.-+|||||+++|+..-
T Consensus         5 ~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           5 CGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            6899999999999999999764

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.61  E-value=0.0043  Score=42.11  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++++|.-++|||||+..|....
T Consensus         6 i~viGHVd~GKTTL~~~Ll~~~   27 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLLMDR   27 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHHHHc
Confidence            5899999999999999986543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.59  E-value=0.0036  Score=45.04  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++..++||.|+|||.|.++|++-+.
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhc
Confidence            4455689999999999999998753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0044  Score=42.37  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ...|.||+|+||||+.++++..+
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            35688999999999999987655

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.0049  Score=41.34  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .-..|.||.|+||||+.++++..+
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhc
Confidence            347889999999999999998765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0043  Score=45.86  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=17.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~   46 (159)
                      .-+.|+|++|||||+++..+.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            347999999999999987543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=95.28  E-value=0.0067  Score=41.22  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++++|.-.+|||||++.|....
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            5899999999999999996544

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.24  E-value=0.007  Score=42.31  Aligned_cols=25  Identities=28%  Similarity=0.321  Sum_probs=22.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -++.|+||-++|||+++++|..+++
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4678999999999999999999984

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.0068  Score=42.31  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=18.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICF   47 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~   47 (159)
                      +.++-|.||+|+|||||.-.++.
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHH
Confidence            46899999999999999655543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.0078  Score=42.57  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      |.-.+|+|+.|+|||||+..|+.-.
T Consensus        43 GQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          43 GQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             TCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            6788999999999999999887644

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.03  E-value=0.0081  Score=43.89  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..-+.++||+|+|||-|.++|+-++
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhc
Confidence            3457889999999999999999876

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.86  E-value=0.01  Score=40.68  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++++|.-++|||||...|....+
T Consensus         9 i~iiGHvD~GKsTl~~~ll~~~g   31 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLIYKCG   31 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHS
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcC
Confidence            48999999999999999976544

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.79  E-value=0.0093  Score=41.71  Aligned_cols=24  Identities=29%  Similarity=0.246  Sum_probs=20.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ..+++|+|.-|.|||||.+.++.-
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            357899999999999999988643

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.64  E-value=0.0086  Score=44.12  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      -..||||.|+|||++++.++.-
T Consensus        45 n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHH
Confidence            3589999999999999987753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.59  E-value=0.0091  Score=41.12  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+-++|||||+..|....
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~~~   48 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILFLT   48 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHHHT
T ss_pred             EEEEeeCCCCHHHHHHHHHHHc
Confidence            6899999999999999996543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.45  E-value=0.014  Score=40.83  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=18.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~   46 (159)
                      +.++-|.||+|+|||||.-.++
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHH
T ss_pred             ceeEEEecCCCcHHHHHHHHHH
Confidence            5789999999999999964444

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=0.0077  Score=43.61  Aligned_cols=22  Identities=18%  Similarity=0.210  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy17514         28 NAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ++|+|+-|+|||||+++|....
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~   41 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRA   41 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHC
Confidence            6999999999999999996443

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.40  E-value=0.012  Score=42.07  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      +..++||+|+|||.+.+.|+-.+
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            56788999999999999999776

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.014  Score=42.55  Aligned_cols=21  Identities=33%  Similarity=0.594  Sum_probs=17.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGI   45 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i   45 (159)
                      ..+.+|.||-|+||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            578999999999999987543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=94.16  E-value=0.017  Score=41.21  Aligned_cols=18  Identities=33%  Similarity=0.709  Sum_probs=16.2

Q ss_pred             CCCeEEEEcCCCCcHHHH
Q psy17514         24 DREFNAITGLNGTGKSNI   41 (159)
Q Consensus        24 ~~~~~~liG~NGaGKSTL   41 (159)
                      ++++..+.|.||+|||||
T Consensus        13 ~~~valffGLSGTGKTTL   30 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTL   30 (318)
T ss_dssp             TCCEEEEEECTTSCHHHH
T ss_pred             CCCEEEEEccCCCCcccc
Confidence            468889999999999996

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.10  E-value=0.019  Score=40.12  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      +.++-|.||+|+|||||.-.++..
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEecCCccchHHHHHHHHHH
Confidence            468999999999999997666544

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.013  Score=41.80  Aligned_cols=18  Identities=33%  Similarity=0.669  Sum_probs=16.2

Q ss_pred             CCCeEEEEcCCCCcHHHH
Q psy17514         24 DREFNAITGLNGTGKSNI   41 (159)
Q Consensus        24 ~~~~~~liG~NGaGKSTL   41 (159)
                      ++++..+.|.||+|||||
T Consensus        13 ~~~~alfFGLSGTGKTTL   30 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTL   30 (313)
T ss_dssp             TSCEEEEECSTTSSHHHH
T ss_pred             CCCEEEEEccCCCCcccc
Confidence            478889999999999996

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.06  E-value=0.013  Score=42.24  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      ++|-|+=||||||+++.|.--+.
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            67889999999999999986543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.97  E-value=0.018  Score=41.50  Aligned_cols=23  Identities=22%  Similarity=0.208  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         28 NAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      +.|=|+=|+||||+++.|.--+.
T Consensus         9 I~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           9 IYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEECCccCCHHHHHHHHHHHhc
Confidence            57889999999999999986553

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.91  E-value=0.019  Score=38.40  Aligned_cols=27  Identities=19%  Similarity=0.079  Sum_probs=23.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      ...+|.||.++|||++..+|..++...
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~l~G~   80 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHFIQGA   80 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             eEEEEECCCCccHHHHHHHHHHHhCCE
Confidence            578899999999999999998888643

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.77  E-value=0.016  Score=40.83  Aligned_cols=17  Identities=29%  Similarity=0.339  Sum_probs=14.0

Q ss_pred             CeEEEEcCCCCcHHHHH
Q psy17514         26 EFNAITGLNGTGKSNIL   42 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl   42 (159)
                      +.+.|.|+-||||||.|
T Consensus        25 g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SCEEEEECTTSCHHHHH
T ss_pred             CCEEEEecCCccHHHHH
Confidence            45678899999999765

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.69  E-value=0.012  Score=41.09  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=16.3

Q ss_pred             CeEEEEcCCCCcHHHHH-HHHHHH
Q psy17514         26 EFNAITGLNGTGKSNIL-DGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl-~~i~~~   48 (159)
                      +-..|+|+-|+||||.| ..+..+
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~l   38 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAHL   38 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHHH
Confidence            44678899999999764 444444

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.54  E-value=0.016  Score=41.70  Aligned_cols=21  Identities=24%  Similarity=0.316  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|-|+=|+||||+++.|.-.
T Consensus         7 I~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC-
T ss_pred             EEEECCcCCCHHHHHHHHHHH
Confidence            578899999999999999643

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.42  E-value=0.02  Score=40.95  Aligned_cols=19  Identities=32%  Similarity=0.618  Sum_probs=16.7

Q ss_pred             CCCeEEEEcCCCCcHHHHH
Q psy17514         24 DREFNAITGLNGTGKSNIL   42 (159)
Q Consensus        24 ~~~~~~liG~NGaGKSTLl   42 (159)
                      ++++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4678899999999999983

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.83  E-value=0.044  Score=37.55  Aligned_cols=28  Identities=25%  Similarity=0.121  Sum_probs=22.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVLGIQ   52 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~   52 (159)
                      ..-+.|.|+.|+||+++-++|.......
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~~~   50 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLSDRS   50 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHSTTT
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcCCc
Confidence            3457889999999999999998665443

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=92.73  E-value=0.049  Score=34.02  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=19.1

Q ss_pred             CCeEEEEcCCCCcHHH-HHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSN-ILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKST-Ll~~i~~~   48 (159)
                      |.+..++||=.||||| |++.+...
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            4578899999999999 66766544

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.58  E-value=0.028  Score=34.48  Aligned_cols=19  Identities=21%  Similarity=0.387  Sum_probs=15.3

Q ss_pred             CeEEEEcCCCCcHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDG   44 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~   44 (159)
                      ....|.+|.|||||+++-.
T Consensus         9 ~~~ll~apTGsGKT~~~~~   27 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPA   27 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHH
Confidence            4567899999999998643

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.56  E-value=0.038  Score=36.57  Aligned_cols=24  Identities=8%  Similarity=-0.179  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .-+.+.||+|+||||+...++...
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999887654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.14  E-value=0.055  Score=37.80  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=20.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      |.-.+|+|+.|+|||+|+..|+--
T Consensus        68 GQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          68 GGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCHHHHHHHHHHH
Confidence            577899999999999997776543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.03  E-value=0.059  Score=32.82  Aligned_cols=23  Identities=0%  Similarity=-0.109  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         27 FNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      .+.+.|-+|||||||-++|.-.+
T Consensus         8 ~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           8 SIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             EEEECTTCCSCHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            45788999999999999995544

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=91.56  E-value=0.05  Score=37.72  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ++|+|-.-+|||||+++|.+-
T Consensus       115 v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         115 ALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEecCccchhhhhhhhhcc
Confidence            689999999999999999864

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.31  E-value=0.11  Score=33.90  Aligned_cols=24  Identities=17%  Similarity=0.077  Sum_probs=19.5

Q ss_pred             eEEEEcCC-CCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLN-GTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~N-GaGKSTLl~~i~~~~~   50 (159)
                      .+.|.|-+ |+||||+--.|+..+.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHH
Confidence            46799997 9999999887776663

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=89.95  E-value=0.064  Score=32.36  Aligned_cols=18  Identities=17%  Similarity=0.161  Sum_probs=14.2

Q ss_pred             CCeEEEEcCCCCcHHHHH
Q psy17514         25 REFNAITGLNGTGKSNIL   42 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl   42 (159)
                      +..+.|..|.|||||...
T Consensus         7 ~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TCEEEECCCTTSSTTTTH
T ss_pred             CCcEEEEcCCCCChhHHH
Confidence            456778899999999553

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.94  E-value=0.15  Score=40.27  Aligned_cols=24  Identities=29%  Similarity=0.320  Sum_probs=19.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..+.|.|++|||||.-.+.|..-+
T Consensus       126 QsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         126 QSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHH
Confidence            477899999999999887775443

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.80  E-value=0.12  Score=31.90  Aligned_cols=20  Identities=30%  Similarity=0.225  Sum_probs=16.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDG   44 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~   44 (159)
                      |.+..|+||=.|||||-|=.
T Consensus         2 G~L~li~GpMfsGKTt~Li~   21 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMR   21 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHH
T ss_pred             cEEEEEEecccCHHHHHHHH
Confidence            56789999999999996443

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=88.79  E-value=0.15  Score=39.97  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=18.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ..+.|.|++|||||+-.+.|.--
T Consensus        87 QsIiisGeSGsGKTe~~k~il~y  109 (684)
T d1lkxa_          87 QCVIISGESGAGKTEASKKIMQF  109 (684)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56789999999999988876443

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.35  E-value=0.15  Score=35.69  Aligned_cols=22  Identities=27%  Similarity=0.223  Sum_probs=18.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~   46 (159)
                      |.-.+|+|+.|+|||+|+..+.
T Consensus        68 GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          68 GQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEeecCCCCChHHHHHHHH
Confidence            5678999999999999976554

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=87.97  E-value=0.18  Score=39.80  Aligned_cols=24  Identities=25%  Similarity=0.252  Sum_probs=19.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..+.|.|++|||||+-.+.|.--+
T Consensus        92 Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          92 QSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            568899999999999877764433

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=87.90  E-value=0.12  Score=35.70  Aligned_cols=16  Identities=19%  Similarity=0.405  Sum_probs=14.1

Q ss_pred             CCeEEEEcCCCCcHHH
Q psy17514         25 REFNAITGLNGTGKSN   40 (159)
Q Consensus        25 ~~~~~liG~NGaGKST   40 (159)
                      +..+.|.+|.|||||+
T Consensus         9 ~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           9 KRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             TCEEEECCCTTSSTTT
T ss_pred             CCcEEEEECCCCCHHH
Confidence            5678889999999996

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=87.81  E-value=0.18  Score=40.31  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=18.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ..+.|.|++|||||.-.+.|.--
T Consensus       124 QsIiisGeSGaGKTe~~K~il~y  146 (794)
T d2mysa2         124 QSILITGESGAGKTVNTKRVIQY  146 (794)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            46789999999999877765433

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.79  E-value=0.18  Score=32.50  Aligned_cols=17  Identities=29%  Similarity=0.094  Sum_probs=12.9

Q ss_pred             EEEEcCCCCcHHHHHHH
Q psy17514         28 NAITGLNGTGKSNILDG   44 (159)
Q Consensus        28 ~~liG~NGaGKSTLl~~   44 (159)
                      ..|.+|.|+|||.+.-.
T Consensus        26 ~lv~~pTGsGKT~i~~~   42 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMM   42 (200)
T ss_dssp             EEEECCTTSCHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHH
Confidence            45779999999975433

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=87.66  E-value=0.14  Score=35.69  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=19.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      |.-.+|+|+.|+|||+|+..+...
T Consensus        67 GQr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          67 GQRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHHHT
T ss_pred             CceEeeccCCCCChHHHHHHHHhh
Confidence            567899999999999998765443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.13  E-value=0.29  Score=33.47  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..++.+.|+=|.||||+--.++..+
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHH
Confidence            4577899999999999988877665

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=86.96  E-value=0.23  Score=39.62  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=18.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514         26 EFNAITGLNGTGKSNILDGICFV   48 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~   48 (159)
                      ..+.|.|++|||||.-.+.|...
T Consensus       122 Q~IiisGESGaGKTe~~K~il~y  144 (789)
T d1kk8a2         122 QSCLITGESGAGKTENTKKVIMY  144 (789)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            56789999999999886655433

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=86.53  E-value=0.24  Score=39.15  Aligned_cols=24  Identities=17%  Similarity=0.146  Sum_probs=19.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         26 EFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        26 ~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..+.|.|++|||||.-.+.|...+
T Consensus        95 Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          95 QSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            567899999999999888775443

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.31  E-value=0.22  Score=32.35  Aligned_cols=17  Identities=12%  Similarity=0.065  Sum_probs=14.1

Q ss_pred             CCeEEEEcCCCCcHHHH
Q psy17514         25 REFNAITGLNGTGKSNI   41 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTL   41 (159)
                      +.-..|..|.|+|||+.
T Consensus        40 ~~~~il~apTGsGKT~~   56 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLL   56 (202)
T ss_dssp             CSCEEEECSSHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHH
Confidence            45567889999999986

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.75  E-value=0.22  Score=30.92  Aligned_cols=21  Identities=29%  Similarity=0.104  Sum_probs=17.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDGI   45 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i   45 (159)
                      |.+..|+||=-|||||-|=-.
T Consensus         7 G~l~lI~GpMfSGKTteLi~~   27 (141)
T d1xx6a1           7 GWVEVIVGPMYSGKSEELIRR   27 (141)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             eeEEEEEeccccHHHHHHHHH
Confidence            778999999999999965433

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.55  E-value=0.17  Score=33.85  Aligned_cols=20  Identities=30%  Similarity=0.253  Sum_probs=15.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHH
Q psy17514         25 REFNAITGLNGTGKSNILDG   44 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~   44 (159)
                      ++-+.++.|.|+|||+..-.
T Consensus        58 g~~~~i~apTGsGKT~~~~~   77 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLA   77 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHH
Confidence            56678889999999976443

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=84.16  E-value=0.49  Score=30.70  Aligned_cols=26  Identities=31%  Similarity=0.351  Sum_probs=22.4

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         23 FDREFNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        23 ~~~~~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      -+..+++|.|-|  ||||.-.+|..++.
T Consensus        12 ~~~~~iAITGTn--GKTTt~~~l~~iL~   37 (207)
T d1j6ua3          12 EKKEEFAVTGTD--GKTTTTAMVAHVLK   37 (207)
T ss_dssp             HCCCEEEEECSS--SHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC--CHHHHHHHHHHHHH
Confidence            346789999999  99999999988875

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.57  E-value=0.47  Score=32.09  Aligned_cols=24  Identities=33%  Similarity=0.297  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514         27 FNAITGLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~~~~~   50 (159)
                      .++|.|.=|+||||+---|+..+.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA   26 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHH
Confidence            468899999999999877776653

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.39  E-value=0.57  Score=31.73  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=20.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514         25 REFNAITGLNGTGKSNILDGICFVL   49 (159)
Q Consensus        25 ~~~~~liG~NGaGKSTLl~~i~~~~   49 (159)
                      ..++++.|.=|+||||+--.|+..+
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3577888999999999977776554

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.69  E-value=0.53  Score=30.41  Aligned_cols=20  Identities=25%  Similarity=0.325  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q psy17514         27 FNAITGLNGTGKSNILDGIC   46 (159)
Q Consensus        27 ~~~liG~NGaGKSTLl~~i~   46 (159)
                      ++.|+|+..||||.+-+.+.
T Consensus         1 iiLVtGGarSGKS~~AE~l~   20 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALI   20 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEECCCCccHHHHHHHHH
Confidence            46899999999999998875

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.54  E-value=0.71  Score=30.17  Aligned_cols=25  Identities=32%  Similarity=0.602  Sum_probs=19.2

Q ss_pred             CeEEEE-cCCCCcHHHHHHHHHHHhC
Q psy17514         26 EFNAIT-GLNGTGKSNILDGICFVLG   50 (159)
Q Consensus        26 ~~~~li-G~NGaGKSTLl~~i~~~~~   50 (159)
                      .++++. +.-|+||||+--.|+..+.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la   28 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALG   28 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            356777 6779999999887776653