Psyllid ID: psy17544

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTINKHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSRF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccccEEEEEEccEEEEEcccccccccEEEEEEccccEEEEEEcHHccccEEEEEEcccccccccccEEEEccccEEEcccccccccEEEccccccccccccccccccccccccccccccccccEEEEEccEEEEEcccccccccEEEEccccccHHHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHccccccccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHccccccccHHHcHcccccEEEEEEEccEEEEEEccccccccEEEEEcccccccEEEEEEEEEccEEEEEEcccccccEcccEEEEEEEEcEEEEcHHHcccEEcccccEccccccccccEEEEcccccccHHHccccccEEccccHHHHHHccEEcccEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEcccHHHHHHHHHHHHHccccccccccccEEEEEcccc
Coil and Loop (DISEMBL)
MLGAISRATAGALKavkptlnpallqgeaSKAVAGFTINKhyaakaapkgkgngRVVAVIGAVVdvqfdhdlppilnalevegrspRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVvadsgnpikipvgaeTLGRIINVigepidergpidtdksaaihadapefvEMSVEQEILVTGIKVVDllapyakggkiglfggagvgKTVLIMELINNVAkahggysvfagvgertregnDLYHEMIESGVIslkdksskvnflfnsrf
Flexible Loop (DISEMBL)
MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTINKHYAakaapkgkgnGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQvvadsgnpikipvgaetLGRIINVIGepidergpiDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESgvislkdksskvnflfnsrf
Low Complexity Region (SEG)
MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTINKHYaakaapkgkgngRvvavigavvdvQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAkggkiglfggagvgkTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSRF
Disordered region (IsUnstruct)
*********************PALLQGEASKAVAGFTINKHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI*****AAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISL***************
Disordered Region (DISOPRED)
*****************************************************GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSRF
Disordered Region (DISEMBL)
MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTINKHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSRF
Disordered Region (DISPRO)
MLGAISRATAGALKAVKPTLNPALLQGEASKAVA*FTI***********GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSRF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTINKHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q9PTY0	518	ATP synthase subunit beta	N/A	N/A	0.969	0.498	0.764	1e-106
Q25117	523	ATP synthase subunit beta	N/A	N/A	0.984	0.500	0.734	1e-106
Q05825	505	ATP synthase subunit beta	yes	N/A	0.789	0.415	0.9	1e-106
P06576	529	ATP synthase subunit beta	yes	N/A	0.973	0.489	0.753	1e-105
P00829	528	ATP synthase subunit beta	yes	N/A	0.984	0.496	0.750	1e-105
P10719	529	ATP synthase subunit beta	yes	N/A	0.977	0.491	0.757	1e-104
P56480	529	ATP synthase subunit beta	yes	N/A	0.984	0.495	0.748	1e-102
Q5ZLC5	533	ATP synthase subunit beta	yes	N/A	0.789	0.393	0.876	1e-101
P46561	538	ATP synthase subunit beta	yes	N/A	0.812	0.401	0.837	1e-100
Q24751	228	ATP synthase subunit beta	N/A	N/A	0.721	0.842	0.880	2e-93

>sp|Q9PTY0|ATPB_CYPCA ATP synthase subunit beta, mitochondrial OS=Cyprinus carpio GN=atp5b PE=2 SV=1

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/263 (76%), Positives = 220/263 (83%), Gaps = 5/263 (1%)

Query: 1   MLGAISRATAGALKAVKPTLNP-ALLQGEASKAVAGFTINKHYAAKAAPKGKGNGRVVAV 59
           MLGA+ R   GAL+A++P + P   L G    A A     + Y A AA     +GR+VAV
Sbjct: 1   MLGAVGRCCTGALQALRPGVTPLKALNG----APAALFSRRDYVAPAAAAAAASGRIVAV 56

Query: 60  IGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119
           IGAVVDVQFD DLPPILNALEV GR  RLVLEVAQHLGENTVRTIAMDGTEGLVRGQ V 
Sbjct: 57  IGAVVDVQFDEDLPPILNALEVAGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVL 116

Query: 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTG 179
           D+G PI+IPVG ETLGRI+NVIGEPIDERGPI T ++A IHA+APEF +MSVEQEILVTG
Sbjct: 117 DTGAPIRIPVGPETLGRIMNVIGEPIDERGPITTKQTAPIHAEAPEFTDMSVEQEILVTG 176

Query: 180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239
           IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL
Sbjct: 177 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 236

Query: 240 YHEMIESGVISLKDKSSKVNFLF 262
           YHEMIESGVI+LKD +SKV  ++
Sbjct: 237 YHEMIESGVINLKDTTSKVALVY 259

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
Cyprinus carpio (taxid: 7962)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 1EC: 4

>sp|Q25117|ATPB_HEMPU ATP synthase subunit beta, mitochondrial OS=Hemicentrotus pulcherrimus PE=2 SV=1

 Score =  384 bits (985), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/264 (73%), Positives = 220/264 (83%), Gaps = 2/264 (0%)

Query: 1   MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTINKH-YAAKAAPKGKG-NGRVVA 58
           M   +++ +  A++A K   + +L Q  +   V   T +K  YAA+A       +G++VA
Sbjct: 1   MFSRVAKTSFSAVRAAKSQFSHSLSQQTSKTWVPAATCSKRSYAAEAKTSAAPVSGQIVA 60

Query: 59  VIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVV 118
           VIGAVVDVQF+ DLPPILNALEV+GR+ RLVLEVAQHLGENTVRTIAMDGTEGL+RGQ  
Sbjct: 61  VIGAVVDVQFEDDLPPILNALEVQGRTSRLVLEVAQHLGENTVRTIAMDGTEGLIRGQKC 120

Query: 119 ADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVT 178
            D+G+PI IPVG ETLGRIINVIGEPIDERGPI TD+ +AIHA+APEFVEMSV QEILVT
Sbjct: 121 VDTGSPISIPVGPETLGRIINVIGEPIDERGPIGTDRRSAIHAEAPEFVEMSVNQEILVT 180

Query: 179 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND 238
           GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND
Sbjct: 181 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND 240

Query: 239 LYHEMIESGVISLKDKSSKVNFLF 262
           LYHEMIE GVISLKD +SKV  ++
Sbjct: 241 LYHEMIEGGVISLKDDTSKVALVY 264

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Hemicentrotus pulcherrimus (taxid: 7650)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|Q05825|ATPB_DROME ATP synthase subunit beta, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-beta PE=2 SV=3

 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/210 (90%), Positives = 202/210 (96%)

Query: 53  NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGL 112
           NG++VAVIGAVVDVQFD +LPPILNALEV+ RSPRLVLEVAQHLGENTVRTIAMDGTEGL
Sbjct: 37  NGKIVAVIGAVVDVQFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGL 96

Query: 113 VRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVE 172
           VRGQ V D+G PI+IPVGAETLGRIINVIGEPIDERGPIDTDK+AAIHA+APEFV+MSVE
Sbjct: 97  VRGQKVLDTGYPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEFVQMSVE 156

Query: 173 QEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 232
           QEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER
Sbjct: 157 QEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 216

Query: 233 TREGNDLYHEMIESGVISLKDKSSKVNFLF 262
           TREGNDLY+EMIE GVISLKDK+SKV  ++
Sbjct: 217 TREGNDLYNEMIEGGVISLKDKTSKVALVY 246

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|P06576|ATPB_HUMAN ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3

 Score =  380 bits (976), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/272 (75%), Positives = 223/272 (81%), Gaps = 13/272 (4%)

Query: 1   MLGAISRATA----GALKAVKPT--LNPA-LLQGEASKAVAGFTINKHYAAKAAPK---G 50
           MLG + R  A    GAL+ + P+  L PA LL   A  AV      + YAA+ +P    G
Sbjct: 1   MLGFVGRVAAAPASGALRRLTPSASLPPAQLLLRAAPTAVHPV---RDYAAQTSPSPKAG 57

Query: 51  KGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTE 110
              GR+VAVIGAVVDVQFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTE
Sbjct: 58  AATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTE 117

Query: 111 GLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMS 170
           GLVRGQ V DSG PIKIPVG ETLGRI+NVIGEPIDERGPI T + A IHA+APEF+EMS
Sbjct: 118 GLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMS 177

Query: 171 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 230
           VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG
Sbjct: 178 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 237

Query: 231 ERTREGNDLYHEMIESGVISLKDKSSKVNFLF 262
           ERTREGNDLYHEMIESGVI+LKD +SKV  ++
Sbjct: 238 ERTREGNDLYHEMIESGVINLKDATSKVALVY 269

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|P00829|ATPB_BOVIN ATP synthase subunit beta, mitochondrial OS=Bos taurus GN=ATP5B PE=1 SV=2

 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/269 (75%), Positives = 220/269 (81%), Gaps = 7/269 (2%)

Query: 1   MLGAISRATA----GALKAVKPTLNPALLQGEASKAVAGFTINKHYAAKAAPK---GKGN 53
           MLG + R  A    GAL+ + P+      Q     A A     + YAA+A+P    G   
Sbjct: 1   MLGLVGRVVAASASGALRGLSPSAPLPQAQLLLRAAPAALQPARDYAAQASPSPKAGATT 60

Query: 54  GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 113
           GR+VAVIGAVVDVQFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct: 61  GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120

Query: 114 RGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQ 173
           RGQ V DSG PI+IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQ
Sbjct: 121 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 180

Query: 174 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 233
           EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT
Sbjct: 181 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 240

Query: 234 REGNDLYHEMIESGVISLKDKSSKVNFLF 262
           REGNDLYHEMIESGVI+LKD +SKV  ++
Sbjct: 241 REGNDLYHEMIESGVINLKDATSKVALVY 269

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|P10719|ATPB_RAT ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/268 (75%), Positives = 224/268 (83%), Gaps = 8/268 (2%)

Query: 1   MLGAISRATA-GALKAVKPTLNPALLQGEA--SKAVAGFTINKHYAAK--AAPK-GKGNG 54
           ++G ++ A+A GAL+ + P    AL Q       A AG    + YAA+  AAPK G   G
Sbjct: 4   LVGRVASASASGALRGLNPL--AALPQAHLLLRTAPAGVHPARDYAAQSSAAPKAGTATG 61

Query: 55  RVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVR 114
           ++VAVIGAVVDVQFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLVR
Sbjct: 62  QIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVR 121

Query: 115 GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQE 174
           GQ V DSG PIKIPVG ETLGRI+NVIGEPIDERGPI T + A IHA+APEF+EMSVEQE
Sbjct: 122 GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQE 181

Query: 175 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 234
           ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR
Sbjct: 182 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 241

Query: 235 EGNDLYHEMIESGVISLKDKSSKVNFLF 262
           EGNDLYHEMIESGVI+LKD +SKV  ++
Sbjct: 242 EGNDLYHEMIESGVINLKDATSKVALVY 269

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|P56480|ATPB_MOUSE ATP synthase subunit beta, mitochondrial OS=Mus musculus GN=Atp5b PE=1 SV=2

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/266 (74%), Positives = 221/266 (83%), Gaps = 4/266 (1%)

Query: 1   MLGAISRATA-GALKAVKPTLNPALLQGEASKAVAGFTINKHYAAKAAPK---GKGNGRV 56
           ++G ++ A+A GAL+ + P+      Q     A AG    + YAA+A+     G   GR+
Sbjct: 4   LVGRVASASASGALRGLSPSAALPQAQLLLRAAPAGVHPARDYAAQASAAPKAGTATGRI 63

Query: 57  VAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ 116
           VAVIGAVVDVQFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ
Sbjct: 64  VAVIGAVVDVQFDEGLPPILNALEVQGRDSRLVLEVAQHLGESTVRTIAMDGTEGLVRGQ 123

Query: 117 VVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEIL 176
            V DSG PIKIPVG ETLGRI+NVIGEPIDERGPI T + A IHA+APEF+EMSVEQEIL
Sbjct: 124 KVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEIL 183

Query: 177 VTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 236
           VTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG
Sbjct: 184 VTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 243

Query: 237 NDLYHEMIESGVISLKDKSSKVNFLF 262
           NDLYHEMIESGVI+LKD +SKV  ++
Sbjct: 244 NDLYHEMIESGVINLKDATSKVALVY 269

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|Q5ZLC5|ATPB_CHICK ATP synthase subunit beta, mitochondrial OS=Gallus gallus GN=ATP5B PE=1 SV=1

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/210 (87%), Positives = 195/210 (92%)

Query: 53  NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGL 112
            GR+VAVIGAVVDVQFD  LPPILNALEV+GR  RLVLEVAQHLGENTVRTIAMDGTEGL
Sbjct: 65  TGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGENTVRTIAMDGTEGL 124

Query: 113 VRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVE 172
           VRGQ V DSG PI+IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVE
Sbjct: 125 VRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPITTKQFAAIHAEAPEFVEMSVE 184

Query: 173 QEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 232
           Q+ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER
Sbjct: 185 QKILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 244

Query: 233 TREGNDLYHEMIESGVISLKDKSSKVNFLF 262
           TREGNDLYHEMIESGVI+LKD +SKV  ++
Sbjct: 245 TREGNDLYHEMIESGVINLKDATSKVALVY 274

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|P46561|ATPB_CAEEL ATP synthase subunit beta, mitochondrial OS=Caenorhabditis elegans GN=atp-2 PE=1 SV=2

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/216 (83%), Positives = 196/216 (90%)

Query: 47  APKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAM 106
           A     +GR+VAVIGAVVDVQFD +LPPILN LEV GRSPRL+LEV+QHLG+N VR IAM
Sbjct: 63  ATAANASGRIVAVIGAVVDVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAM 122

Query: 107 DGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
           DGTEGLVRGQ VAD+G+PIKIPVG ETLGRI+NVIGEPIDERGPI +   AAIHA+APEF
Sbjct: 123 DGTEGLVRGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEF 182

Query: 167 VEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 226
           VEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF
Sbjct: 183 VEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 242

Query: 227 AGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLF 262
           AGVGERTREGNDLYHEMIE GVI LK K+SKV+ ++
Sbjct: 243 AGVGERTREGNDLYHEMIEGGVIDLKGKNSKVSLVY 278

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Required during male mating behavior for the response to hermaphrodite contact, acting with lov-1 and pkd-2. May be involved in polycystin signaling.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|Q24751|ATPB_DROVI ATP synthase subunit beta, mitochondrial (Fragment) OS=Drosophila virilis GN=ATPsyn-beta PE=3 SV=1

 Score =  342 bits (876), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 169/192 (88%), Positives = 184/192 (95%)

Query: 53  NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGL 112
           NG++VAVIGAVVDVQFD +LPPILNALEV+ RSPRLVLEVAQHLGENTVRTIAMDGTEGL
Sbjct: 37  NGKIVAVIGAVVDVQFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGL 96

Query: 113 VRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVE 172
           VRGQ V D+G+PI+IPVGAETLGRI+NVIGEPIDERGPI + K++ IHA+APEFV+MSVE
Sbjct: 97  VRGQKVLDTGSPIRIPVGAETLGRIMNVIGEPIDERGPIPSAKTSPIHAEAPEFVDMSVE 156

Query: 173 QEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 232
           QEILVTGIKVVDLLAPY KGGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGER
Sbjct: 157 QEILVTGIKVVDLLAPYCKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 216

Query: 233 TREGNDLYHEMI 244
           TREGNDLY+EMI
Sbjct: 217 TREGNDLYNEMI 228

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Drosophila virilis (taxid: 7244)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
89574469	521	putative ATP synthase beta subunit [Acyr	0.984	0.502	0.806	1e-114
209915626	521	ATP synthase subunit beta, mitochondrial	0.984	0.502	0.806	1e-114
229577383	517	ATP synthase subunit beta, mitochondrial	0.969	0.499	0.814	1e-114
340724488	515	PREDICTED: ATP synthase subunit beta, mi	0.969	0.500	0.821	1e-114
380021893	515	PREDICTED: ATP synthase subunit beta, mi	0.969	0.500	0.806	1e-113
350424996	515	PREDICTED: ATP synthase subunit beta, mi	0.969	0.500	0.817	1e-113
328785025	516	PREDICTED: ATP synthase subunit beta, mi	0.969	0.5	0.802	1e-113
383854658	516	PREDICTED: ATP synthase subunit beta, mi	0.969	0.5	0.821	1e-113
114052072	516	H+ transporting ATP synthase beta subuni	0.966	0.498	0.821	1e-111
359843290	524	ATP-synthase subunit beta [Schistocerca	0.981	0.498	0.781	1e-111

>gi|89574469|gb|ABD76365.1| putative ATP synthase beta subunit [Acyrthosiphon pisum]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/263 (80%), Positives = 228/263 (86%), Gaps = 1/263 (0%)

Query: 1   MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTINKHYAAKAAP-KGKGNGRVVAV 59
           ML A+SRA  GALKA K  L P ++Q E  KA+   + N +  A A P  G   GR+VAV
Sbjct: 1   MLNALSRAAIGALKAGKSNLTPKIVQNELPKAMVATSSNSNNKAAAKPMAGTSQGRIVAV 60

Query: 60  IGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119
           IGAVVDVQFD +LPPILNALEV+ RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ V 
Sbjct: 61  IGAVVDVQFDEELPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQEVL 120

Query: 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTG 179
           D G+PI+IPVGAETLGRIINVIGEPIDERGPIDTDK+A IHA+AP FVEMSVEQEILVTG
Sbjct: 121 DCGSPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAPIHAEAPPFVEMSVEQEILVTG 180

Query: 180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239
           IKVVDLLAPY KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL
Sbjct: 181 IKVVDLLAPYVKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 240

Query: 240 YHEMIESGVISLKDKSSKVNFLF 262
           YHEMIESGVISLKDK+SKV  ++
Sbjct: 241 YHEMIESGVISLKDKTSKVALVY 263

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209915626|ref|NP_001119645.2| ATP synthase subunit beta, mitochondrial [Acyrthosiphon pisum]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/263 (80%), Positives = 228/263 (86%), Gaps = 1/263 (0%)

Query: 1   MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTINKHYAAKAAP-KGKGNGRVVAV 59
           ML A+SRA  GALKA K  L P ++Q E  KA+   + N +  A A P  G   GR+VAV
Sbjct: 1   MLNALSRAAIGALKAGKSNLTPKIVQNELPKAMVATSSNSNNKAAAKPMAGTSQGRIVAV 60

Query: 60  IGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119
           IGAVVDVQFD +LPPILNALEV+ RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ V 
Sbjct: 61  IGAVVDVQFDEELPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQEVL 120

Query: 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTG 179
           D G+PI+IPVGAETLGRIINVIGEPIDERGPIDTDK+A IHA+AP FVEMSVEQEILVTG
Sbjct: 121 DCGSPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAPIHAEAPPFVEMSVEQEILVTG 180

Query: 180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239
           IKVVDLLAPY KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL
Sbjct: 181 IKVVDLLAPYVKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 240

Query: 240 YHEMIESGVISLKDKSSKVNFLF 262
           YHEMIESGVISLKDK+SKV  ++
Sbjct: 241 YHEMIESGVISLKDKTSKVALVY 263

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|229577383|ref|NP_001153366.1| ATP synthase subunit beta, mitochondrial [Nasonia vitripennis]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/264 (81%), Positives = 235/264 (89%), Gaps = 6/264 (2%)

Query: 1   MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTIN-KHYAAKAAPKGK-GNGRVVA 58
           ML A+S+A AGAL+AVKPTL    LQ E++K     ++N + YAAK A  GK   G+VVA
Sbjct: 1   MLSAVSKAAAGALRAVKPTL----LQQESAKIAGVLSVNSREYAAKPAAAGKVAQGKVVA 56

Query: 59  VIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVV 118
           VIGAVVDVQFD +LPPILNALEV+ RSPRLVLE+AQHLGENTVRTIAMDGTEGLVRGQ V
Sbjct: 57  VIGAVVDVQFDDELPPILNALEVQDRSPRLVLEIAQHLGENTVRTIAMDGTEGLVRGQNV 116

Query: 119 ADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVT 178
            D+G PI+IPVGAETLGRIINVIGEPIDERGPI TDK A+IHADAPEFV+MSVEQEILVT
Sbjct: 117 LDTGFPIRIPVGAETLGRIINVIGEPIDERGPIPTDKLASIHADAPEFVDMSVEQEILVT 176

Query: 179 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND 238
           GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND
Sbjct: 177 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND 236

Query: 239 LYHEMIESGVISLKDKSSKVNFLF 262
           LY EMIESGVISLKDK+SKV+ ++
Sbjct: 237 LYQEMIESGVISLKDKTSKVSLVY 260

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724488|ref|XP_003400614.1| PREDICTED: ATP synthase subunit beta, mitochondrial-like [Bombus terrestris]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/263 (82%), Positives = 231/263 (87%), Gaps = 5/263 (1%)

Query: 1   MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTIN-KHYAAKAAPKGKGNGRVVAV 59
           ML A+S+A AGAL+AVKPTL    LQ E ++     ++N + YA  A  K    G+VVAV
Sbjct: 1   MLNAVSKAAAGALRAVKPTL----LQNEVARISGSLSVNSRDYAKAAGSKAGAQGKVVAV 56

Query: 60  IGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119
           IGAVVDVQFD DLPPILNALEV+ R+PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ V 
Sbjct: 57  IGAVVDVQFDDDLPPILNALEVQNRTPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQTVL 116

Query: 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTG 179
           DSG PI+IPVGAETLGRIINVIGEPIDERGPI TDK AAIHADAPEFVEMSVEQEILVTG
Sbjct: 117 DSGYPIRIPVGAETLGRIINVIGEPIDERGPIPTDKLAAIHADAPEFVEMSVEQEILVTG 176

Query: 180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239
           IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL
Sbjct: 177 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 236

Query: 240 YHEMIESGVISLKDKSSKVNFLF 262
           YHEMIESGVISLKDK+SKV  ++
Sbjct: 237 YHEMIESGVISLKDKTSKVALVY 259

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021893|ref|XP_003694791.1| PREDICTED: ATP synthase subunit beta, mitochondrial-like [Apis florea]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/263 (80%), Positives = 230/263 (87%), Gaps = 5/263 (1%)

Query: 1   MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTIN-KHYAAKAAPKGKGNGRVVAV 59
           ML  +S+A AGAL+AVKP++    LQ E +K     ++N + YA  A+ KG   G++VAV
Sbjct: 1   MLNVVSKAAAGALRAVKPSI----LQNEITKISGALSVNSRDYAKAASSKGGAQGKIVAV 56

Query: 60  IGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119
           IGAVVDVQFD  LPPILNALEV+ R+PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ V 
Sbjct: 57  IGAVVDVQFDDALPPILNALEVQNRTPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQNVL 116

Query: 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTG 179
           DSG PI+IPVGAETLGRIINVIGEPIDERGPI TDK A IHADAPEFVEMSVEQEILVTG
Sbjct: 117 DSGYPIRIPVGAETLGRIINVIGEPIDERGPIPTDKLAPIHADAPEFVEMSVEQEILVTG 176

Query: 180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239
           IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL
Sbjct: 177 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 236

Query: 240 YHEMIESGVISLKDKSSKVNFLF 262
           YHEMIESGVISLKDK+SKV  ++
Sbjct: 237 YHEMIESGVISLKDKTSKVALVY 259

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424996|ref|XP_003493980.1| PREDICTED: ATP synthase subunit beta, mitochondrial-like [Bombus impatiens]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/263 (81%), Positives = 230/263 (87%), Gaps = 5/263 (1%)

Query: 1   MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTIN-KHYAAKAAPKGKGNGRVVAV 59
           ML  +S+A AGAL+AVKPTL    LQ E ++     ++N + YA  A  K    G+VVAV
Sbjct: 1   MLNVVSKAAAGALRAVKPTL----LQNEVARISGALSVNSRDYAKAAGSKAGAQGKVVAV 56

Query: 60  IGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119
           IGAVVDVQFD DLPPILNALEV+ R+PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ V 
Sbjct: 57  IGAVVDVQFDDDLPPILNALEVQNRTPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQTVL 116

Query: 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTG 179
           DSG PI+IPVGAETLGRIINVIGEPIDERGPI TDK AAIHADAPEFVEMSVEQEILVTG
Sbjct: 117 DSGYPIRIPVGAETLGRIINVIGEPIDERGPIPTDKLAAIHADAPEFVEMSVEQEILVTG 176

Query: 180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239
           IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL
Sbjct: 177 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 236

Query: 240 YHEMIESGVISLKDKSSKVNFLF 262
           YHEMIESGVISLKDK+SKV  ++
Sbjct: 237 YHEMIESGVISLKDKTSKVALVY 259

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785025|ref|XP_624156.3| PREDICTED: ATP synthase subunit beta, mitochondrial [Apis mellifera]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/263 (80%), Positives = 230/263 (87%), Gaps = 5/263 (1%)

Query: 1   MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTIN-KHYAAKAAPKGKGNGRVVAV 59
           ML  +S+A AGAL+AVKP++    LQ E +K     ++N + YA  A+ KG   G++VAV
Sbjct: 1   MLNVVSKAAAGALRAVKPSI----LQNEITKISGALSVNSRDYAKAASSKGGAQGKIVAV 56

Query: 60  IGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119
           IGAVVDVQFD  LPPILNALEV+ R+PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ V 
Sbjct: 57  IGAVVDVQFDDALPPILNALEVQNRTPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQSVL 116

Query: 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTG 179
           DSG PI+IPVGAETLGRIINVIGEPIDERGPI TDK A IHADAPEFV+MSVEQEILVTG
Sbjct: 117 DSGYPIRIPVGAETLGRIINVIGEPIDERGPIPTDKLAPIHADAPEFVDMSVEQEILVTG 176

Query: 180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239
           IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL
Sbjct: 177 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 236

Query: 240 YHEMIESGVISLKDKSSKVNFLF 262
           YHEMIESGVISLKDK+SKV  ++
Sbjct: 237 YHEMIESGVISLKDKTSKVALVY 259

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854658|ref|XP_003702837.1| PREDICTED: ATP synthase subunit beta, mitochondrial-like [Megachile rotundata]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/263 (82%), Positives = 230/263 (87%), Gaps = 5/263 (1%)

Query: 1   MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTIN-KHYAAKAAPKGKGNGRVVAV 59
           ML A+S+A AGAL+AVKPTL    LQ E +K     ++N + YA  AA K    G++VAV
Sbjct: 1   MLSAVSKAAAGALRAVKPTL----LQNEVAKISGALSVNSRDYAKAAASKAGAQGKIVAV 56

Query: 60  IGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119
           IGAVVDVQFD  LPPILNALEV+ RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ V 
Sbjct: 57  IGAVVDVQFDDALPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQTVL 116

Query: 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTG 179
           DSG PI+IPVGAETLGRIINVIGEPIDERGPI TDK A IHADAPEFVEMSVEQEILVTG
Sbjct: 117 DSGYPIRIPVGAETLGRIINVIGEPIDERGPIPTDKLAPIHADAPEFVEMSVEQEILVTG 176

Query: 180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239
           IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL
Sbjct: 177 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 236

Query: 240 YHEMIESGVISLKDKSSKVNFLF 262
           YHEMIESGVISLKDK+SKV  ++
Sbjct: 237 YHEMIESGVISLKDKTSKVALVY 259

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052072|ref|NP_001040450.1| H+ transporting ATP synthase beta subunit isoform 1 [Bombyx mori] gi|95102938|gb|ABF51410.1| H+ transporting ATP synthase beta subunit isoform 1 [Bombyx mori]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/263 (82%), Positives = 233/263 (88%), Gaps = 6/263 (2%)

Query: 1   MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTINKH-YAAKAAPKGKGNGRVVAV 59
           MLGAISR  +G L AVK     +L   E  K VA   +NK  YAAK+A  GKG G+VVAV
Sbjct: 1   MLGAISRVGSGIL-AVKSVAEKSL--SECGKIVAVNAVNKRDYAAKSA--GKGQGKVVAV 55

Query: 60  IGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119
           IGAVVDVQF+ +LPPILNALEV+ RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ V 
Sbjct: 56  IGAVVDVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVL 115

Query: 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTG 179
           DSG+PI+IPVGAETLGRIINVIGEPIDERGPI TDK+AAIHA+APEFV+MSV+QEILVTG
Sbjct: 116 DSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTG 175

Query: 180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239
           IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL
Sbjct: 176 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 235

Query: 240 YHEMIESGVISLKDKSSKVNFLF 262
           YHEMIESGVISLKDK+SKV  ++
Sbjct: 236 YHEMIESGVISLKDKTSKVALVY 258

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|359843290|gb|AEV89780.1| ATP-synthase subunit beta [Schistocerca gregaria]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/266 (78%), Positives = 228/266 (85%), Gaps = 5/266 (1%)

Query: 2   LGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTINKHYAAKAA--PKGK---GNGRV 56
           + ++ RATAG LK  KP+     LQ ++  A++  + N      AA  PK K     G+V
Sbjct: 1   MASVVRATAGLLKGFKPSFLANKLQNDSVNALSALSTNSQQRRWAATQPKAKSAGAQGKV 60

Query: 57  VAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ 116
           VAVIGAVVDVQF+  LPPILNALEV+ R+PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ
Sbjct: 61  VAVIGAVVDVQFEDSLPPILNALEVQNRTPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ 120

Query: 117 VVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEIL 176
            V DSG+PI+IPVGAETLGRIINVIGEPIDERGPI+TDK AAIHADAPEFV+MSVEQEIL
Sbjct: 121 AVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPINTDKYAAIHADAPEFVDMSVEQEIL 180

Query: 177 VTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 236
           VTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG
Sbjct: 181 VTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 240

Query: 237 NDLYHEMIESGVISLKDKSSKVNFLF 262
           NDLYHEMIESGVISLKDK+SKV  ++
Sbjct: 241 NDLYHEMIESGVISLKDKTSKVALVY 266

Source: Schistocerca gregaria

Species: Schistocerca gregaria

Genus: Schistocerca

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
ZFIN|ZDB-GENE-030131-124	517	atp5b "ATP synthase, H+ transp	0.969	0.499	0.645	1.4e-80
FB|FBgn0010217	505	ATPsyn-beta "ATP synthase-beta	0.736	0.388	0.826	4.7e-80
UNIPROTKB|Q5ZLC5	533	ATP5B "ATP synthase subunit be	0.984	0.491	0.635	3.8e-78
MGI|MGI:107801	529	Atp5b "ATP synthase, H+ transp	0.977	0.491	0.638	1e-77
UNIPROTKB|P00829	528	ATP5B "ATP synthase subunit be	0.984	0.496	0.635	2.1e-77
UNIPROTKB|F8VPV9	518	ATP5B "ATP synthase subunit be	0.984	0.505	0.646	2.1e-77
UNIPROTKB|P06576	529	ATP5B "ATP synthase subunit be	0.984	0.495	0.646	2.1e-77
UNIPROTKB|F1PDB4	527	ATP5B "ATP synthase subunit be	0.981	0.495	0.635	4.3e-77
UNIPROTKB|G3V6D3	529	Atp5b "ATP synthase subunit be	0.977	0.491	0.634	4.3e-77
UNIPROTKB|F1SLA0	528	ATP5B "ATP synthase subunit be	0.981	0.494	0.637	5.5e-77

ZFIN|ZDB-GENE-030131-124 atp5b "ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit" [Danio rerio (taxid:7955)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 169/262 (64%), Positives = 187/262 (71%)

Query:     1 MLGAISRATAGALKAVKPTLNPALLQGEASKAVAGFTINKHYXXXXXXXXXXXXRXXXXX 60
             MLGA+ R   GAL+A+KP ++P     +A          + Y            R     
Sbjct:     1 MLGAVGRCCTGALQALKPGVHPL----KALNGAPSLFSRRGYAAPAAAAAAASGRIVAVI 56

Query:    61 XXXXXXQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVAD 120
                   QFD  LPPILNALEV GR  RLVLEVAQHLGENTVRTIAMDGTEGLVRGQ V D
Sbjct:    57 GAVVDVQFDEGLPPILNALEVAGRDSRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLD 116

Query:   121 SGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGI 180
             +G PI+IPVG ETLGRI+NVIGEPIDERGPI T ++A IHA+APEF +MSVEQEILVTGI
Sbjct:   117 TGAPIRIPVGPETLGRIMNVIGEPIDERGPISTKQTAPIHAEAPEFTDMSVEQEILVTGI 176

Query:   181 KVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 240
             KVVDLLAPYA               TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY
Sbjct:   177 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 236

Query:   241 HEMIESGVISLKDKSSKVNFLF 262
             HEMIESGVI+LKD +SKV  ++
Sbjct:   237 HEMIESGVINLKDTTSKVALVY 258

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

FB|FBgn0010217 ATPsyn-beta "ATP synthase-beta" [Drosophila melanogaster (taxid:7227)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 162/196 (82%), Positives = 173/196 (88%)

Query:    67 QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
             QFD +LPPILNALEV+ RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ V D+G PI+
Sbjct:    51 QFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPIR 110

Query:   127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
             IPVGAETLGRIINVIGEPIDERGPIDTDK+AAIHA+APEFV+MSVEQEILVTGIKVVDLL
Sbjct:   111 IPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEFVQMSVEQEILVTGIKVVDLL 170

Query:   187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
             APYA               TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY+EMIE 
Sbjct:   171 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYNEMIEG 230

Query:   247 GVISLKDKSSKVNFLF 262
             GVISLKDK+SKV  ++
Sbjct:   231 GVISLKDKTSKVALVY 246

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0015992 "proton transport" evidence=ISS;NAS

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|Q5ZLC5 ATP5B "ATP synthase subunit beta, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 174/274 (63%), Positives = 186/274 (67%)

Query:     1 MLGAISRATAGALKAVKPTLN----------PALLQGEASKAVAGFTINKHYXXXX--XX 48
             MLG   R +A A  A +P L           P LL   A  A A      H         
Sbjct:     1 MLGLAGRCSAAAASAARPALRRAAGPSHGFLPLLLSRGAGPAAAVGARRDHAAQAAPAAK 60

Query:    49 XXXXXXRXXXXXXXXXXXQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDG 108
                   R           QFD  LPPILNALEV+GR  RLVLEVAQHLGENTVRTIAMDG
Sbjct:    61 AGSATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGENTVRTIAMDG 120

Query:   109 TEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVE 168
             TEGLVRGQ V DSG PI+IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVE
Sbjct:   121 TEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPITTKQFAAIHAEAPEFVE 180

Query:   169 MSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAG 228
             MSVEQ+ILVTGIKVVDLLAPYA               TVLIMELINNVAKAHGGYSVFAG
Sbjct:   181 MSVEQKILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 240

Query:   229 VGERTREGNDLYHEMIESGVISLKDKSSKVNFLF 262
             VGERTREGNDLYHEMIESGVI+LKD +SKV  ++
Sbjct:   241 VGERTREGNDLYHEMIESGVINLKDATSKVALVY 274

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006933 "negative regulation of cell adhesion involved in substrate-bound cell migration" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0043499 "eukaryotic cell surface binding" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0051453 "regulation of intracellular pH" evidence=IEA

GO:0001525 "angiogenesis" evidence=IMP

MGI|MGI:107801 Atp5b "ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit" [Mus musculus (taxid:10090)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 171/268 (63%), Positives = 191/268 (71%)

Query:     1 MLGAISRATA-GALKAVKPTLNPALLQGEA--SKAVAGFTINKHYXXXXXXX---XXXXX 54
             ++G ++ A+A GAL+ + P+   AL Q +     A AG    + Y               
Sbjct:     4 LVGRVASASASGALRGLSPSA--ALPQAQLLLRAAPAGVHPARDYAAQASAAPKAGTATG 61

Query:    55 RXXXXXXXXXXXQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVR 114
             R           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLVR
Sbjct:    62 RIVAVIGAVVDVQFDEGLPPILNALEVQGRDSRLVLEVAQHLGESTVRTIAMDGTEGLVR 121

Query:   115 GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQE 174
             GQ V DSG PIKIPVG ETLGRI+NVIGEPIDERGPI T + A IHA+APEF+EMSVEQE
Sbjct:   122 GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQE 181

Query:   175 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTR 234
             ILVTGIKVVDLLAPYA               TVLIMELINNVAKAHGGYSVFAGVGERTR
Sbjct:   182 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 241

Query:   235 EGNDLYHEMIESGVISLKDKSSKVNFLF 262
             EGNDLYHEMIESGVI+LKD +SKV  ++
Sbjct:   242 EGNDLYHEMIESGVINLKDATSKVALVY 269

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISO

GO:0001525 "angiogenesis" evidence=ISO

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006172 "ADP biosynthetic process" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0006754 "ATP biosynthetic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO

GO:0006933 "negative regulation of cell adhesion involved in substrate-bound cell migration" evidence=IMP

GO:0009986 "cell surface" evidence=ISO

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030228 "lipoprotein particle receptor activity" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0042288 "MHC class I protein binding" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0043499 "eukaryotic cell surface binding" evidence=ISO

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISO

GO:0051453 "regulation of intracellular pH" evidence=ISO

UNIPROTKB|P00829 ATP5B "ATP synthase subunit beta, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 171/269 (63%), Positives = 186/269 (69%)

Query:     1 MLGAISRATA----GALKAVKPTLNPALLQGEASKAVAGFTINKHYXXXXX---XXXXXX 53
             MLG + R  A    GAL+ + P+      Q     A A     + Y              
Sbjct:     1 MLGLVGRVVAASASGALRGLSPSAPLPQAQLLLRAAPAALQPARDYAAQASPSPKAGATT 60

Query:    54 XRXXXXXXXXXXXQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 113
              R           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct:    61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120

Query:   114 RGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQ 173
             RGQ V DSG PI+IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQ
Sbjct:   121 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 180

Query:   174 EILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERT 233
             EILVTGIKVVDLLAPYA               TVLIMELINNVAKAHGGYSVFAGVGERT
Sbjct:   181 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 240

Query:   234 REGNDLYHEMIESGVISLKDKSSKVNFLF 262
             REGNDLYHEMIESGVI+LKD +SKV  ++
Sbjct:   241 REGNDLYHEMIESGVINLKDATSKVALVY 269

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0051453 "regulation of intracellular pH" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0043499 "eukaryotic cell surface binding" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0006933 "negative regulation of cell adhesion involved in substrate-bound cell migration" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|F8VPV9 ATP5B "ATP synthase subunit beta" [Homo sapiens (taxid:9606)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 174/269 (64%), Positives = 188/269 (69%)

Query:     1 MLGAISRATA----GALKAVKPT--LNPA-LLQGEASKAVAGFTINKHYXXXXXXXXXXX 53
             MLG + R  A    GAL+ + P+  L PA LL   A  AV                    
Sbjct:     1 MLGFVGRVAAAPASGALRRLTPSASLPPAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAAT 60

Query:    54 XRXXXXXXXXXXXQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 113
              R           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct:    61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120

Query:   114 RGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQ 173
             RGQ V DSG PIKIPVG ETLGRI+NVIGEPIDERGPI T + A IHA+APEF+EMSVEQ
Sbjct:   121 RGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQ 180

Query:   174 EILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERT 233
             EILVTGIKVVDLLAPYA               TVLIMELINNVAKAHGGYSVFAGVGERT
Sbjct:   181 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 240

Query:   234 REGNDLYHEMIESGVISLKDKSSKVNFLF 262
             REGNDLYHEMIESGVI+LKD +SKV  ++
Sbjct:   241 REGNDLYHEMIESGVINLKDATSKVALVY 269

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|P06576 ATP5B "ATP synthase subunit beta, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 174/269 (64%), Positives = 188/269 (69%)

Query:     1 MLGAISRATA----GALKAVKPT--LNPA-LLQGEASKAVAGFTINKHYXXXXXXXXXXX 53
             MLG + R  A    GAL+ + P+  L PA LL   A  AV                    
Sbjct:     1 MLGFVGRVAAAPASGALRRLTPSASLPPAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAAT 60

Query:    54 XRXXXXXXXXXXXQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 113
              R           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct:    61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120

Query:   114 RGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQ 173
             RGQ V DSG PIKIPVG ETLGRI+NVIGEPIDERGPI T + A IHA+APEF+EMSVEQ
Sbjct:   121 RGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQ 180

Query:   174 EILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERT 233
             EILVTGIKVVDLLAPYA               TVLIMELINNVAKAHGGYSVFAGVGERT
Sbjct:   181 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 240

Query:   234 REGNDLYHEMIESGVISLKDKSSKVNFLF 262
             REGNDLYHEMIESGVI+LKD +SKV  ++
Sbjct:   241 REGNDLYHEMIESGVINLKDATSKVALVY 269

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006933 "negative regulation of cell adhesion involved in substrate-bound cell migration" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0043499 "eukaryotic cell surface binding" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005215 "transporter activity" evidence=NAS

GO:0005759 "mitochondrial matrix" evidence=NAS;TAS

GO:0005754 "mitochondrial proton-transporting ATP synthase, catalytic core" evidence=NAS

GO:0006091 "generation of precursor metabolites and energy" evidence=NAS

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0042288 "MHC class I protein binding" evidence=IDA

GO:0006754 "ATP biosynthetic process" evidence=IMP

GO:0009986 "cell surface" evidence=IDA

GO:0015992 "proton transport" evidence=IMP

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IMP

GO:0051453 "regulation of intracellular pH" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IC;TAS

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

UNIPROTKB|F1PDB4 ATP5B "ATP synthase subunit beta" [Canis lupus familiaris (taxid:9615)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 171/269 (63%), Positives = 188/269 (69%)

Query:     1 MLGAISRATA----GALKAVKPTLNPALLQGEASKAVAGFTINKHYXXXXX---XXXXXX 53
             MLG + R  A    GAL+ + P+  P + +     + A     + Y              
Sbjct:     1 MLGFVGRVAATSASGALRGLGPSPLPQV-KVLLRASPAALQSARDYATQTSPSPKAGAAT 59

Query:    54 XRXXXXXXXXXXXQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 113
              R           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct:    60 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 119

Query:   114 RGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQ 173
             RGQ V DSG PIKIPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQ
Sbjct:   120 RGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 179

Query:   174 EILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERT 233
             EILVTGIKVVDLLAPYA               TVLIMELINNVAKAHGGYSVFAGVGERT
Sbjct:   180 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 239

Query:   234 REGNDLYHEMIESGVISLKDKSSKVNFLF 262
             REGNDLYHEMIESGVI+LKD +SKV  ++
Sbjct:   240 REGNDLYHEMIESGVINLKDATSKVALVY 268

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|G3V6D3 Atp5b "ATP synthase subunit beta" [Rattus norvegicus (taxid:10116)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 170/268 (63%), Positives = 190/268 (70%)

Query:     1 MLGAISRATA-GALKAVKPTLNPALLQGEA--SKAVAGFTINKHYXXXXXXX---XXXXX 54
             ++G ++ A+A GAL+ + P    AL Q +     A AG    + Y               
Sbjct:     4 LVGRVASASASGALRGLNPLA--ALPQAQLLLRTAPAGVHPARDYAAQSSAAPKAGTATG 61

Query:    55 RXXXXXXXXXXXQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVR 114
             +           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLVR
Sbjct:    62 QIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVR 121

Query:   115 GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQE 174
             GQ V DSG PIKIPVG ETLGRI+NVIGEPIDERGPI T + A IHA+APEF+EMSVEQE
Sbjct:   122 GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQE 181

Query:   175 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTR 234
             ILVTGIKVVDLLAPYA               TVLIMELINNVAKAHGGYSVFAGVGERTR
Sbjct:   182 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 241

Query:   235 EGNDLYHEMIESGVISLKDKSSKVNFLF 262
             EGNDLYHEMIESGVI+LKD +SKV  ++
Sbjct:   242 EGNDLYHEMIESGVINLKDATSKVALVY 269

GO:0001525 "angiogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006933 "negative regulation of cell adhesion involved in substrate-bound cell migration" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0043499 "eukaryotic cell surface binding" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0051453 "regulation of intracellular pH" evidence=IEA

UNIPROTKB|F1SLA0 ATP5B "ATP synthase subunit beta" [Sus scrofa (taxid:9823)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 169/265 (63%), Positives = 187/265 (70%)

Query:     2 LGAISRATA-GALKAVKPTLNPALLQGEASKAVAGFTINKHYXXXXX---XXXXXXXRXX 57
             +G ++ A+A GAL+ + P+      Q     A A     + Y               R  
Sbjct:     5 VGRVASASASGALRGLSPSAPLPQAQLLLRAAPAALQPARDYATQPSPSPKAGAATGRIV 64

Query:    58 XXXXXXXXXQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQV 117
                      QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ 
Sbjct:    65 AVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQK 124

Query:   118 VADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILV 177
             V DSG PIKIPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEF+EMSVEQEILV
Sbjct:   125 VLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFMEMSVEQEILV 184

Query:   178 TGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGN 237
             TGIKVVDLLAPYA               TVLIMELINNVAKAHGGYSVFAGVGERTREGN
Sbjct:   185 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN 244

Query:   238 DLYHEMIESGVISLKDKSSKVNFLF 262
             DLYHEMIESGVI+LKD +SKV  ++
Sbjct:   245 DLYHEMIESGVINLKDATSKVALVY 269

GO:0051453 "regulation of intracellular pH" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0043499 "eukaryotic cell surface binding" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0006933 "negative regulation of cell adhesion involved in substrate-bound cell migration" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1QQS8	ATPB_NITHX	3, ., 6, ., 3, ., 1, 4	0.7536	0.7593	0.4243	yes	N/A
Q0C100	ATPB_HYPNA	3, ., 6, ., 3, ., 1, 4	0.7512	0.7706	0.4315	yes	N/A
A9WWS2	ATPB_BRUSI	3, ., 6, ., 3, ., 1, 4	0.7918	0.7368	0.3761	yes	N/A
P00830	ATPB_YEAST	3, ., 6, ., 3, ., 1, 4	0.6349	0.9248	0.4814	yes	N/A
P10719	ATPB_RAT	3, ., 6, ., 3, ., 1, 4	0.7574	0.9774	0.4914	yes	N/A
Q1GQS5	ATPB_SPHAL	3, ., 6, ., 3, ., 1, 4	0.7045	0.7969	0.4132	yes	N/A
A8LJR4	ATPB2_DINSH	3, ., 6, ., 3, ., 1, 4	0.7380	0.7857	0.4409	yes	N/A
C3M9S1	ATPB_RHISN	3, ., 6, ., 3, ., 1, 4	0.8010	0.7330	0.3861	yes	N/A
P00829	ATPB_BOVIN	3, ., 6, ., 3, ., 1, 4	0.7509	0.9849	0.4962	yes	N/A
Q3SVJ1	ATPB_NITWN	3, ., 6, ., 3, ., 1, 4	0.7794	0.7330	0.4096	yes	N/A
Q8FYR5	ATPB_BRUSU	3, ., 6, ., 3, ., 1, 4	0.7918	0.7368	0.3761	yes	N/A
Q6NDD2	ATPB_RHOPA	3, ., 6, ., 3, ., 1, 4	0.7704	0.7368	0.4117	yes	N/A
Q01859	ATPBM_ORYSJ	3, ., 6, ., 3, ., 1, 4	0.7745	0.7669	0.3695	yes	N/A
Q05825	ATPB_DROME	3, ., 6, ., 3, ., 1, 4	0.9	0.7894	0.4158	yes	N/A
Q5LNP1	ATPB_RUEPO	3, ., 6, ., 3, ., 1, 4	0.7333	0.7857	0.4409	yes	N/A
A3PIB9	ATPB1_RHOS1	3, ., 6, ., 3, ., 1, 4	0.7393	0.7894	0.4421	yes	N/A
B6JD09	ATPB_OLICO	3, ., 6, ., 3, ., 1, 4	0.7794	0.7330	0.4096	yes	N/A
Q2YLE6	ATPB_BRUA2	3, ., 6, ., 3, ., 1, 4	0.7918	0.7368	0.3761	yes	N/A
A8HS10	ATPB_AZOC5	3, ., 6, ., 3, ., 1, 4	0.7704	0.7368	0.4100	yes	N/A
A6UDM1	ATPB_SINMW	3, ., 6, ., 3, ., 1, 4	0.7959	0.7330	0.3831	yes	N/A
P46561	ATPB_CAEEL	3, ., 6, ., 3, ., 1, 4	0.8379	0.8120	0.4014	yes	N/A
Q57B88	ATPB_BRUAB	3, ., 6, ., 3, ., 1, 4	0.7918	0.7368	0.3761	yes	N/A
Q92LK8	ATPB_RHIME	3, ., 6, ., 3, ., 1, 4	0.7959	0.7330	0.3869	yes	N/A
Q8YJ35	ATPB_BRUME	3, ., 6, ., 3, ., 1, 4	0.7918	0.7368	0.3761	yes	N/A
A9M837	ATPB_BRUC2	3, ., 6, ., 3, ., 1, 4	0.7918	0.7368	0.3761	yes	N/A
A5VSE1	ATPB_BRUO2	3, ., 6, ., 3, ., 1, 4	0.7918	0.7368	0.3761	yes	N/A
Q3J431	ATPB1_RHOS4	3, ., 6, ., 3, ., 1, 4	0.7393	0.7894	0.4421	yes	N/A
P72247	ATPB_RHOCA	3, ., 6, ., 3, ., 1, 4	0.7251	0.7894	0.4449	yes	N/A
Q5ZLC5	ATPB_CHICK	3, ., 6, ., 3, ., 1, 4	0.8761	0.7894	0.3939	yes	N/A
Q8UC76	ATPB_AGRT5	3, ., 6, ., 3, ., 1, 4	0.7793	0.7819	0.4297	yes	N/A
Q2VZN2	ATPB_MAGSA	3, ., 6, ., 3, ., 1, 4	0.7358	0.7969	0.4472	yes	N/A
P56480	ATPB_MOUSE	3, ., 6, ., 3, ., 1, 4	0.7481	0.9849	0.4952	yes	N/A
Q1MAZ2	ATPB_RHIL3	3, ., 6, ., 3, ., 1, 4	0.7718	0.7744	0.4309	yes	N/A
A1B8P0	ATPB_PARDP	3, ., 6, ., 3, ., 1, 4	0.7136	0.7969	0.4472	yes	N/A
P06576	ATPB_HUMAN	3, ., 6, ., 3, ., 1, 4	0.7536	0.9736	0.4896	yes	N/A
P49376	ATPB_KLULA	3, ., 6, ., 3, ., 1, 4	0.7105	0.8345	0.4396	yes	N/A
Q2K3H0	ATPB_RHIEC	3, ., 6, ., 3, ., 1, 4	0.7948	0.7330	0.4105	yes	N/A
B5ZSN7	ATPB_RHILW	3, ., 6, ., 3, ., 1, 4	0.7669	0.7744	0.4309	yes	N/A
A7IH31	ATPB_XANP2	3, ., 6, ., 3, ., 1, 4	0.7743	0.7330	0.4079	yes	N/A
B3PQ68	ATPB_RHIE6	3, ., 6, ., 3, ., 1, 4	0.7897	0.7330	0.4105	yes	N/A
A4WUM7	ATPB_RHOS5	3, ., 6, ., 3, ., 1, 4	0.7393	0.7894	0.4421	yes	N/A
Q24751	ATPB_DROVI	3, ., 6, ., 3, ., 1, 4	0.8802	0.7218	0.8421	N/A	N/A
A6WXX1	ATPB_OCHA4	3, ., 6, ., 3, ., 1, 4	0.7809	0.7857	0.4042	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	266
PRK09280	463	PRK09280, PRK09280, F0F1 ATP synthase subunit beta	1e-132
COG0055	468	COG0055, AtpD, F0F1-type ATP synthase, beta subuni	1e-116
TIGR01039	461	TIGR01039, atpD, ATP synthase, F1 beta subunit	1e-111
CHL00060	494	CHL00060, atpB, ATP synthase CF1 beta subunit	5e-99
PRK12597	461	PRK12597, PRK12597, F0F1 ATP synthase subunit beta	2e-90
cd01133	274	cd01133, F1-ATPase_beta, F1 ATP synthase beta subu	5e-84
TIGR03305	449	TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase,	5e-68
COG1157	441	COG1157, FliI, Flagellar biosynthesis/type III sec	5e-24
PRK09099	441	PRK09099, PRK09099, type III secretion system ATPa	3e-22
TIGR01026	440	TIGR01026, fliI_yscN, ATPase FliI/YscN family	5e-22
pfam00006	213	pfam00006, ATP-synt_ab, ATP synthase alpha/beta fa	3e-21
TIGR02546	422	TIGR02546, III_secr_ATP, type III secretion appara	3e-21
TIGR03498	418	TIGR03498, FliI_clade3, flagellar protein export A	5e-21
TIGR03496	411	TIGR03496, FliI_clade1, flagellar protein export A	2e-20
TIGR03497	413	TIGR03497, FliI_clade2, flagellar protein export A	4e-20
TIGR00962	501	TIGR00962, atpA, proton translocating ATP synthase	2e-19
PRK13343	502	PRK13343, PRK13343, F0F1 ATP synthase subunit alph	2e-18
PRK08472	434	PRK08472, fliI, flagellum-specific ATP synthase; V	7e-18
cd01136	326	cd01136, ATPase_flagellum-secretory_path_III, Flag	8e-18
COG0056	504	COG0056, AtpA, F0F1-type ATP synthase, alpha subun	9e-17
pfam02874	69	pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta	3e-16
PRK06315	442	PRK06315, PRK06315, type III secretion system ATPa	2e-15
PRK09281	502	PRK09281, PRK09281, F0F1 ATP synthase subunit alph	5e-15
PRK08927	442	PRK08927, fliI, flagellum-specific ATP synthase; V	6e-15
PRK06002	450	PRK06002, fliI, flagellum-specific ATP synthase; V	2e-14
cd01132	274	cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, c	3e-14
PRK06820	440	PRK06820, PRK06820, type III secretion system ATPa	6e-14
PRK08149	428	PRK08149, PRK08149, ATP synthase SpaL; Validated	9e-14
PRK08972	444	PRK08972, fliI, flagellum-specific ATP synthase; V	1e-13
TIGR03324	497	TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase,	2e-13
PRK07721	438	PRK07721, fliI, flagellum-specific ATP synthase; V	7e-13
PRK06936	439	PRK06936, PRK06936, type III secretion system ATPa	3e-12
TIGR01041	458	TIGR01041, ATP_syn_B_arch, ATP synthase archaeal,	3e-11
PRK07594	433	PRK07594, PRK07594, type III secretion system ATPa	4e-11
PRK06793	432	PRK06793, fliI, flagellum-specific ATP synthase; V	6e-11
PRK04196	460	PRK04196, PRK04196, V-type ATP synthase subunit B;	4e-10
COG1156	463	COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase su	8e-10
PRK05922	434	PRK05922, PRK05922, type III secretion system ATPa	9e-10
PRK07196	434	PRK07196, fliI, flagellum-specific ATP synthase; V	1e-09
PRK05688	451	PRK05688, fliI, flagellum-specific ATP synthase; V	5e-09
CHL00059	485	CHL00059, atpA, ATP synthase CF1 alpha subunit	1e-08
cd01135	276	cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-	3e-08
PTZ00185	574	PTZ00185, PTZ00185, ATPase alpha subunit; Provisio	4e-08
TIGR01040	466	TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B	1e-07
PRK07960	455	PRK07960, fliI, flagellum-specific ATP synthase; V	1e-07
cd01120	165	cd01120, RecA-like_NTPases, RecA-like NTPases	3e-06
PRK02118	436	PRK02118, PRK02118, V-type ATP synthase subunit B;	2e-05
COG1155	588	COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase su	1e-04
PRK04192	586	PRK04192, PRK04192, V-type ATP synthase subunit A;	1e-04
cd01134	369	cd01134, V_A-ATPase_A, V/A-type ATP synthase catal	1e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	6e-04
TIGR01043	578	TIGR01043, ATP_syn_A_arch, ATP synthase archaeal,	6e-04
PRK14698	1017	PRK14698, PRK14698, V-type ATP synthase subunit A;	0.002

>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated

 Score =  380 bits (979), Expect = e-132
 Identities = 142/201 (70%), Positives = 159/201 (79%), Gaps = 2/201 (0%)

Query: 51  KGNGRVVAVIGAVVDVQFDHD-LPPILNALEVE-GRSPRLVLEVAQHLGENTVRTIAMDG 108
              G++V VIG VVDV+F    LP I NALEVE G   +LVLEVAQHLG+  VRTIAM  
Sbjct: 1   MNTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGS 60

Query: 109 TEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVE 168
           T+GLVRG  V D+G PI +PVG  TLGRI NV+GEPIDE+GPI  ++   IH  AP F E
Sbjct: 61  TDGLVRGMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEE 120

Query: 169 MSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228
           +S + EIL TGIKV+DLLAPYAKGGKIGLFGGAGVGKTVLI ELINN+AK HGGYSVFAG
Sbjct: 121 LSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG 180

Query: 229 VGERTREGNDLYHEMIESGVI 249
           VGERTREGNDLYHEM ESGV+
Sbjct: 181 VGERTREGNDLYHEMKESGVL 201

Length = 463

>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy production and conversion]

 Score =  341 bits (878), Expect = e-116
 Identities = 142/203 (69%), Positives = 160/203 (78%), Gaps = 5/203 (2%)

Query: 53  NGRVVAVIGAVVDVQFDHD--LPPILNALEVEGRSPR-LVLEVAQHLGENTVRTIAMDGT 109
            G+VV VIG VVDV+F  +  LP I NALEV+  +   LVLEVAQHLG+N VRTIAM  T
Sbjct: 3   KGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGST 62

Query: 110 EGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI--DTDKSAAIHADAPEFV 167
           +GLVRG  V D+G PI +PVG  TLGRI NV+GEPIDE+GPI  +  +   IH  AP F 
Sbjct: 63  DGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFE 122

Query: 168 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 227
           E+S + EIL TGIKV+DLLAPYAKGGKIGLFGGAGVGKTVLI ELINN+AK HGGYSVFA
Sbjct: 123 ELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFA 182

Query: 228 GVGERTREGNDLYHEMIESGVIS 250
           GVGERTREGNDLYHEM ESGV+ 
Sbjct: 183 GVGERTREGNDLYHEMKESGVLD 205

Length = 468

>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit

 Score =  328 bits (842), Expect = e-111
 Identities = 143/199 (71%), Positives = 159/199 (79%), Gaps = 2/199 (1%)

Query: 54  GRVVAVIGAVVDVQFDHD-LPPILNALEVEGR-SPRLVLEVAQHLGENTVRTIAMDGTEG 111
           G+VV VIG VVDV+F+   LP I NAL+V+ R    L LEVAQHLG++TVRTIAM  T+G
Sbjct: 3   GKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDG 62

Query: 112 LVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSV 171
           LVRG  V D+G PI +PVG ETLGRI NV+GEPIDE+GPI   +   IH  AP F E S 
Sbjct: 63  LVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQST 122

Query: 172 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 231
           + EIL TGIKV+DLLAPYAKGGKIGLFGGAGVGKTVLI ELINN+AK HGGYSVFAGVGE
Sbjct: 123 KVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE 182

Query: 232 RTREGNDLYHEMIESGVIS 250
           RTREGNDLYHEM ESGVI 
Sbjct: 183 RTREGNDLYHEMKESGVID 201

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit [Energy metabolism, ATP-proton motive force interconversion]. Length = 461

>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit

 Score =  297 bits (763), Expect = 5e-99
 Identities = 128/220 (58%), Positives = 157/220 (71%), Gaps = 7/220 (3%)

Query: 46  AAPKGKGNGRVVAVIGAVVDVQF-DHDLPPILNALEVEGRSP-----RLVLEVAQHLGEN 99
           +  + K  GR+  +IG V+DV F    +P I NAL V+GR        +  EV Q LG N
Sbjct: 9   STLEEKNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNN 68

Query: 100 TVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAI 159
            VR +AM  T+GL+RG  V D+G P+ +PVG  TLGRI NV+GEP+D  GP+DT  ++ I
Sbjct: 69  RVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPI 128

Query: 160 HADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 219
           H  AP F+++  +  I  TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AKA
Sbjct: 129 HRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKA 188

Query: 220 HGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKS-SKV 258
           HGG SVF GVGERTREGNDLY EM ESGVI+ ++ + SKV
Sbjct: 189 HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 228

Length = 494

>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional

 Score =  274 bits (704), Expect = 2e-90
 Identities = 111/201 (55%), Positives = 139/201 (69%), Gaps = 1/201 (0%)

Query: 51  KGNGRVVAVIGAVVDVQFD-HDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGT 109
              GR++ + G VVDV+F+   LPPI  AL V       +LEV QHL E TVR IA+  T
Sbjct: 1   MMIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGST 60

Query: 110 EGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEM 169
            GL RG  V ++G PI++PVG   LGR+++V+GEP+D   P+  ++   IH+  P   E 
Sbjct: 61  SGLARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQ 120

Query: 170 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 229
               EIL TGIKV+DLL P AKGGK GLFGGAGVGKTVL+MELI N++K H G SVFAGV
Sbjct: 121 DTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGV 180

Query: 230 GERTREGNDLYHEMIESGVIS 250
           GER+REG++LYHEM ESGV+ 
Sbjct: 181 GERSREGHELYHEMKESGVLD 201

Length = 461

>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit, nucleotide-binding domain

 Score =  252 bits (645), Expect = 5e-84
 Identities = 106/127 (83%), Positives = 114/127 (89%)

Query: 124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVV 183
           PI +PVG ETLGRI NV+GEPIDERGPI T K+  IH +APEFVE S + EIL TGIKV+
Sbjct: 1   PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVI 60

Query: 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 243
           DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN+AKAHGGYSVFAGVGERTREGNDLYHEM
Sbjct: 61  DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEM 120

Query: 244 IESGVIS 250
            ESGV+S
Sbjct: 121 KESGVLS 127

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. Length = 274

>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta

 Score =  216 bits (552), Expect = 5e-68
 Identities = 96/196 (48%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 54  GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 113
           G VVAV G++VDV+FD +LP I + L   GR   +V+EV   L  + VR IA+  T+GL 
Sbjct: 1   GHVVAVRGSIVDVRFDGELPAIHSVLRA-GREGEVVVEVLSQLDAHHVRGIALTPTQGLA 59

Query: 114 RGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQ 173
           RG  V DSG P+K PVG  TL R+ +V G  ID R P    +  ++H   P     S + 
Sbjct: 60  RGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKS 119

Query: 174 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 233
           E+  TGIK +D+L P  +GGK GLFGGAGVGKTVL+ E+I+N+   H G S+F G+GER 
Sbjct: 120 EVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERC 179

Query: 234 REGNDLYHEMIESGVI 249
           REG +LY EM E+GV+
Sbjct: 180 REGEELYREMKEAGVL 195

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase. Length = 449

>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 99.6 bits (249), Expect = 5e-24
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 12/196 (6%)

Query: 53  NGRVVAVIGAVVDVQFDHDLPPI--LNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTE 110
            GR+  V G +++         I  L  +E    S +++ EV     E  +  +  +  E
Sbjct: 25  RGRLTRVTGLLLEAVGPQ--ARIGELCKIERSRGSEKVLAEVVGFNEERVL-LMPFEPVE 81

Query: 111 GLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMS 170
           G+  G  V  +G P+ +PVG   LGR+++ +G P+D  G  D  +   + A  P  ++  
Sbjct: 82  GVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRR 141

Query: 171 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 230
             +E L TG++ +D L    KG +IG+F G+GVGK+ L + +I    +A    +V A +G
Sbjct: 142 PIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTL-LGMIARNTEAD--VNVIALIG 198

Query: 231 ERTREGNDLYHEMIES 246
           ER RE      E IE 
Sbjct: 199 ERGREVR----EFIEK 210

Length = 441

>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional

 Score = 94.8 bits (236), Expect = 3e-22
 Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 10/196 (5%)

Query: 43  AAKAAPKGKGNGRVVAVIGAVVDVQ-FDHDLPPILNALEVEGRSPRLVLEVAQHLG-ENT 100
              A P  +  G+VV VIG ++ V   D  L  +    + +G     +L+ A+ +G    
Sbjct: 15  ELAALPAVRRTGKVVEVIGTLLRVSGLDVTLGELCELRQRDGT----LLQRAEVVGFSRD 70

Query: 101 VRTIAMDGT-EGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAI 159
           V  ++  G   GL RG  V   G P+ +PVG   LGR+I+ +GEPID  GP+D D+   +
Sbjct: 71  VALLSPFGELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPV 130

Query: 160 HADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 219
            A  P+ +   + +  L TG+++VD L    +G ++G+F  AGVGK+ L+          
Sbjct: 131 IAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARG---T 187

Query: 220 HGGYSVFAGVGERTRE 235
               +V A +GER RE
Sbjct: 188 QCDVNVIALIGERGRE 203

Length = 441

>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family

 Score = 94.0 bits (234), Expect = 5e-22
 Identities = 65/213 (30%), Positives = 109/213 (51%), Gaps = 16/213 (7%)

Query: 54  GRVVAVIGAVVDVQFDHDLPPILNALEVE--GRSPRLVLEVAQHLGENTVRTIAMDGTEG 111
           GRV  V G +++         + +   +E  G   RLV EV    GE  V  +  +  EG
Sbjct: 25  GRVTKVKGLLIEAVGPQ--ASVGDLCLIERRGSEGRLVAEVVGFNGEF-VFLMPYEEVEG 81

Query: 112 LVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERG-PIDTDKSAAIHADAPEFVEMS 170
           +  G  V  +G  + I VG   LGR+++ +G+PID +G  +D  ++  +       ++ +
Sbjct: 82  VRPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRA 141

Query: 171 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 230
             +EIL TG++ +D L    KG +IG+F G+GVGK+ L + +I    +A    +V A +G
Sbjct: 142 PIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTL-LGMIARNTEAD--VNVIALIG 198

Query: 231 ERTREGND-LYHEMIESG------VISLKDKSS 256
           ER RE  + + H++ E G      V++  D+S 
Sbjct: 199 ERGREVREFIEHDLGEEGLKRSVVVVATSDQSP 231

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins [Energy metabolism, ATP-proton motive force interconversion]. Length = 440

>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding domain

 Score = 88.3 bits (220), Expect = 3e-21
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 178 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN 237
           TGI+ +DLL P  KG +IG+FGG+G GKTVL+  +  N         V+  +GER RE  
Sbjct: 1   TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAKA--DVVEVYVLIGERGREVA 58

Query: 238 DLYHEMIESGVIS 250
           +   E++  G + 
Sbjct: 59  EFIEELLGEGALK 71

This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Length = 213

>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus H+-transporting two-sector ATPase

 Score = 91.6 bits (228), Expect = 3e-21
 Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 20/215 (9%)

Query: 54  GRVVAVIGAVVDVQFDHDLPPI-LNAL-EVEGRSP-RLVLEVAQHLGENTVRTIAMDGTE 110
           GRV  V G ++       LP   +  L  +  R P +L+ EV    G+  + +  +    
Sbjct: 7   GRVTEVSGTLLKAV----LPGARVGELCLIRRRDPSQLLAEVVGFTGDEALLS-PLGELH 61

Query: 111 GLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAA--IHADAPEFVE 168
           G+  G  V  +G P+ I VG   LGR+++  G P+D +G +   +     + AD P  + 
Sbjct: 62  GISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMS 121

Query: 169 MSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228
                + L TG++ +D L    +G +IG+F GAGVGK+ L+  +    A A    +V A 
Sbjct: 122 RQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARG-ASAD--VNVIAL 178

Query: 229 VGERTREGND-LYHEMIESG------VISLKDKSS 256
           +GER RE  + + H + E G      V+S  D+ S
Sbjct: 179 IGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPS 213

[Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 422

>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI

 Score = 90.8 bits (226), Expect = 5e-21
 Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 11/210 (5%)

Query: 54  GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 113
           GRV AV G +++V+       + +   +  R  R VL        + V  +  +  EG+ 
Sbjct: 1   GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVG 60

Query: 114 RGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI-DTDKSAAIHADAPEFVEMSVE 172
            G  V     P+ +      LGR+IN +GEPID +GP+   ++   + A  P  +  +  
Sbjct: 61  LGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARV 120

Query: 173 QEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 232
            E L TG++V+D   P  +G ++G+F G+GVGK+ L+  L  N         V A VGER
Sbjct: 121 GEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARN---TDADVVVIALVGER 177

Query: 233 TREGND-LYHEMIESG------VISLKDKS 255
            RE  + L  ++ E G      V++  D+S
Sbjct: 178 GREVREFLEDDLGEEGLKRSVVVVATSDES 207

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. Length = 418

>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 102 RTIAM--DGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAI 159
           R + M  +  EGL  G  V     P+++PVG   LGR+I+ +G P+D +GP+D  +   +
Sbjct: 45  RVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPL 104

Query: 160 HADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 219
           +A     ++ +   E L  G++ ++ L    +G ++G+F G+GVGK+ L + ++    +A
Sbjct: 105 YAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTL-LGMMARYTEA 163

Query: 220 HGGYSVFAGVGERTRE 235
                V   +GER RE
Sbjct: 164 D--VVVVGLIGERGRE 177

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively [Cellular processes, Chemotaxis and motility]. Length = 411

>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI

 Score = 88.5 bits (220), Expect = 4e-20
 Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 3/130 (2%)

Query: 109 TEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVE 168
            EG+  G +V  +G P+ I VG   LGR+++ +G P+D  GPI  ++   +    P  ++
Sbjct: 54  VEGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLK 113

Query: 169 MSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228
               ++ L TGIK +D L    KG ++G+F G+GVGK+ L + +I   AKA    +V A 
Sbjct: 114 RPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTL-LGMIARNAKA--DINVIAL 170

Query: 229 VGERTREGND 238
           +GER RE  D
Sbjct: 171 IGERGREVRD 180

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively [Cellular processes, Chemotaxis and motility]. Length = 413

>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha subunit

 Score = 86.7 bits (215), Expect = 2e-19
 Identities = 47/144 (32%), Positives = 79/144 (54%), Gaps = 1/144 (0%)

Query: 89  VLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDER 148
           V  +A +L E++V  + M     +  G  V  +G  +++PVG   LGR++N +GEPID +
Sbjct: 58  VQGIALNLEEDSVGAVIMGDYSDIREGSTVKRTGRILEVPVGDGLLGRVVNALGEPIDGK 117

Query: 149 GPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 208
           GPID+D+ + +   AP  +E     E L TGIK +D + P  +G +  + G    GKT +
Sbjct: 118 GPIDSDEFSPVEKIAPGVIERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAV 177

Query: 209 IMELINNVAKAHGGYSVFAGVGER 232
            ++ I N  K    Y ++  +G++
Sbjct: 178 AIDTIIN-QKDSDVYCIYVAIGQK 200

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit [Energy metabolism, ATP-proton motive force interconversion]. Length = 501

>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 78  ALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRI 137
            L  EG S       A +L E  V  + +D T  ++ G  V  +G  +++PVG   LGR+
Sbjct: 52  LLRFEGGS----RGFAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRV 107

Query: 138 INVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGL 197
           I+ +G P+D  GP+       +   AP  +E     E L TGIKVVD L P  +G +  +
Sbjct: 108 IDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELI 167

Query: 198 FGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 233
            G    GKT + ++ I N  K      V+  +G++ 
Sbjct: 168 IGDRQTGKTAIAIDAIIN-QKDSDVICVYVAIGQKA 202

Length = 502

>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated

 Score = 82.0 bits (203), Expect = 7e-18
 Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 3/126 (2%)

Query: 110 EGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEM 169
           EG   G  V  S   + IPVG   LGR+++ +G PID +G ID ++ A I       ++ 
Sbjct: 75  EGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKR 134

Query: 170 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 229
            +  E+   G+K +D L    KG K+G+F G+GVGK+ L M +I     A     V A +
Sbjct: 135 GLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL-MGMIVKGCLAP--IKVVALI 191

Query: 230 GERTRE 235
           GER RE
Sbjct: 192 GERGRE 197

Length = 434

>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific ATPase/type III secretory pathway virulence-related protein

 Score = 81.2 bits (201), Expect = 8e-18
 Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 3/112 (2%)

Query: 124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVV 183
           P+ +PVG   LGR+++  GEP+D +GP+  +    +    P  ++     E+L TG++ +
Sbjct: 1   PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAI 60

Query: 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE 235
           D L    KG ++G+F G+GVGK+ L + +I     A    +V A +GER RE
Sbjct: 61  DGLLTVGKGQRLGIFAGSGVGKSTL-LGMIARGTTAD--VNVIALIGERGRE 109

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. Length = 326

>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy production and conversion]

 Score = 79.2 bits (196), Expect = 9e-17
 Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 12/183 (6%)

Query: 53  NGRVVAVIGAVVDVQFDHDLPPILN--ALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTE 110
            G V++V   +  V     L  ++    +E  G     V  +A +L E++V  + +    
Sbjct: 28  VGTVISVGDGIARV---SGLENVMAGELVEFPGG----VKGMALNLEEDSVGAVILGDYS 80

Query: 111 GLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVE-M 169
            +  G  V  +G  +++PVG E LGR+++ +G PID +GPID  K+  +   AP  ++  
Sbjct: 81  DIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRK 140

Query: 170 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 229
           SV +  L TGIK +D L P  +G +  + G    GKT + ++ I N  K  G   ++  +
Sbjct: 141 SVNEP-LQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAIDTIIN-QKGSGVKCIYVAI 198

Query: 230 GER 232
           G++
Sbjct: 199 GQK 201

Length = 504

>gnl|CDD|217261 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family, beta-barrel domain

 Score = 71.0 bits (175), Expect = 3e-16
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 56  VVAVIGAVVDVQFDHD-LPPILNALEVEGRS-PRLVLEVAQHLGENTVRTIAMDGTEGLV 113
           +V VIG VVDV+F    LP + NALEVE       +L    +LG + VR + M GT+GL 
Sbjct: 1   IVQVIGPVVDVEFGIGRLPGLYNALEVELVEFGNGLLGEVLNLGGDKVRVVVMGGTDGLS 60

Query: 114 RGQVVADSG 122
           RG  V  +G
Sbjct: 61  RGDEVKRTG 69

This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Length = 69

>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 12/151 (7%)

Query: 118 VADSGNPIKIPVGAETLGRIINVIGEPIDE--RGP-IDTDKSAAIHADAPEFVEMSVEQE 174
           V  +G P+ I  G   LGR++N +GEPID   +GP  + D++  I    P+ +  +  + 
Sbjct: 87  VIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRT 146

Query: 175 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 234
           IL TG++ +D +   A+G +IG+F GAGVGK+ L+  +  N  +A    +V A +GER R
Sbjct: 147 ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD--VNVIALIGERGR 204

Query: 235 E-----GNDLYHEMIESGVI--SLKDKSSKV 258
           E       DL  E ++  VI  S  D+SS++
Sbjct: 205 EVREFIEGDLGEEGMKRSVIVVSTSDQSSQL 235

Length = 442

>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated

 Score = 73.9 bits (183), Expect = 5e-15
 Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 2/105 (1%)

Query: 89  VLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDER 148
           V  +A +L E+ V  + +   E +  G  V  +G  +++PVG   LGR++N +G+PID +
Sbjct: 59  VYGIALNLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGK 118

Query: 149 GPIDTDKSAAIHADAPEFVE-MSVEQEILVTGIKVVDLLAPYAKG 192
           GPI+  ++  +   AP  ++  SV  E L TGIK +D + P  +G
Sbjct: 119 GPIEATETRPVERKAPGVIDRKSVH-EPLQTGIKAIDAMIPIGRG 162

Length = 502

>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated

 Score = 73.5 bits (181), Expect = 6e-15
 Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 54  GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVL-EVAQHLGENTVRTIAM--DGTE 110
           GRVVAV G +V+V        +   + VE R  R V  EV   +G    R + M     E
Sbjct: 19  GRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEV---VGFRGDRALLMPFGPLE 75

Query: 111 GLVRG--QVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSA-AIHADAPEFV 167
           G+ RG   V+A++   ++       LGR++N +GEPID +GP+        + A  P   
Sbjct: 76  GVRRGCRAVIANAAAAVR--PSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAH 133

Query: 168 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 227
             +   E L  G++ ++      +G ++G+F G+GVGK+VL+  L  N        SV  
Sbjct: 134 SRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADAD---VSVIG 190

Query: 228 GVGERTRE 235
            +GER RE
Sbjct: 191 LIGERGRE 198

Length = 442

>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 37/189 (19%)

Query: 95  HLGENTVRTIAMDGTEGLVRGQVVA-----------DSGNPIKI-----PVGAETL---- 134
            LG+     +A+    G   G+VV            +    I +       G   +    
Sbjct: 48  RLGD----FVAIRADGGTHLGEVVRVDPDGVTVKPFEPRIEIGLGDAVFRKGPLRIRPDP 103

Query: 135 ---GRIINVIGEPIDERGPIDT-DKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
              GR+IN +GEPID  GP+    +  +I A AP  +  +  +  L TG++V+D+  P  
Sbjct: 104 SWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLC 163

Query: 191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV-FAGVGERTREGNDLYHEMIESGVI 249
            G +IG+F G+GVGK+ L+  L    A+A    +V  A VGER RE      E +E  + 
Sbjct: 164 AGQRIGIFAGSGVGKSTLLAML----ARADAFDTVVIALVGERGRE----VREFLEDTLA 215

Query: 250 SLKDKSSKV 258
               K+  V
Sbjct: 216 DNLKKAVAV 224

Length = 450

>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 1/108 (0%)

Query: 125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVD 184
             +PVG   LGR+++ +G PID +GPI+T +   I + AP  +      E L TGIK +D
Sbjct: 2   ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAID 61

Query: 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 232
            + P  +G +  + G    GKT + ++ I N  K    Y ++  +G++
Sbjct: 62  AMIPIGRGQRELIIGDRQTGKTAIAIDTIIN-QKGKKVYCIYVAIGQK 108

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Length = 274

>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated

 Score = 70.6 bits (173), Expect = 6e-14
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 4/129 (3%)

Query: 107 DGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
             ++GL  GQ V   G+  ++ VGA+  GRI++ +G PID  GP  T +   +    P  
Sbjct: 79  ASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDG-GPPLTGQWRELDCPPPSP 137

Query: 167 VEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 226
           +     +++L TGI+ +D +    +G +IG+F  AGVGK+ L+  L    A +     V 
Sbjct: 138 LTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGML---CADSAADVMVL 194

Query: 227 AGVGERTRE 235
           A +GER RE
Sbjct: 195 ALIGERGRE 203

Length = 440

>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated

 Score = 70.0 bits (172), Expect = 9e-14
 Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 16/181 (8%)

Query: 89  VLEVAQHLGENTVRTI--AMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPID 146
           V+  AQ +G    RTI   +   +GL R  V+  +G P+ + VG   LG +++  G+ ++
Sbjct: 42  VIARAQVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSVWVGEALLGAVLDPTGKIVE 101

Query: 147 ERGPIDTDKSA----AIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 202
                 T         I    P + E    +E L+TG++ +D L     G ++G+F  AG
Sbjct: 102 RFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAG 161

Query: 203 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG-------VISLKDKS 255
            GKT L+  LI +   +     V   +GER RE  +    +  S        V +  D S
Sbjct: 162 CGKTSLMNMLIEH---SEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFS 218

Query: 256 S 256
           S
Sbjct: 219 S 219

Length = 428

>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 5/135 (3%)

Query: 111 GLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMS 170
           G++ G  V   G    +PVG   LGR+I+ +G P+D  GPI TD+ A+ H+     +   
Sbjct: 81  GVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRR 140

Query: 171 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI-MELINNVAKAHGGYSVFAGV 229
              E L  G++ ++ +    KG ++GLF G+GVGK+VL+ M      A       V   V
Sbjct: 141 PITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADV----IVVGLV 196

Query: 230 GERTREGNDLYHEMI 244
           GER RE  +   E++
Sbjct: 197 GERGREVKEFIEEIL 211

Length = 444

>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 11/162 (6%)

Query: 54  GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 113
              +A +  +  V F+  L           R P  +L +A ++ E+ V  + +     L 
Sbjct: 35  STGIARVHGLPGVGFEELL-----------RFPGGLLGIAFNVDEDEVGVVLLGEYSHLQ 83

Query: 114 RGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQ 173
            G  V  +G  + +PVG   LGR+++ +G P+D  GP+ +     I   AP  ++ +   
Sbjct: 84  AGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVT 143

Query: 174 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215
             L TG+KV+D L P  +G +  + G    GKT + ++ I N
Sbjct: 144 VPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILN 185

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase. Length = 497

>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 115 GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQE 174
           G +V  +G P+++ VG+  +G++++ +GEP+D           +   D P  ++    +E
Sbjct: 81  GCLVEATGKPLEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIRE 140

Query: 175 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 234
            +  G++ +D L    KG ++G+F G+GVGK+ L M +I     A    +V A +GER R
Sbjct: 141 PMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTL-MGMIARNTSAD--LNVIALIGERGR 197

Query: 235 E 235
           E
Sbjct: 198 E 198

Length = 438

>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 10/146 (6%)

Query: 118 VADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILV 177
           V+ +G   ++ VG   LGR+++ +G+P D   P +      ++ADAP  +   + +  L 
Sbjct: 88  VSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLS 147

Query: 178 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN 237
            G++V+D L    +G ++G+F  AG GK+ L+  LI +   A    +V A +GER RE  
Sbjct: 148 LGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRS---AEVDVTVLALIGERGREVR 204

Query: 238 D-LYHEMIESG------VISLKDKSS 256
           + +  ++ E G      V++  D+ S
Sbjct: 205 EFIESDLGEEGLRKAVLVVATSDRPS 230

Length = 439

>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 6/148 (4%)

Query: 107 DGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPE 165
           +GT GL   G  V  +G  +K+PV  + LGRI+N  GEPID    I  D+   I+     
Sbjct: 55  EGTTGLDPTGTKVRFTGETLKLPVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPIN 114

Query: 166 FVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS- 224
                  +E + TGI  +D +    +G K+ +F G+G+    L  + I   A   G  S 
Sbjct: 115 PYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQ-IARQATVRGEESE 173

Query: 225 ---VFAGVGERTREGNDLYHEMIESGVI 249
              VFA +G    E N    +  E+G +
Sbjct: 174 FAVVFAAMGITYEEANFFMKDFEETGAL 201

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases [Energy metabolism, ATP-proton motive force interconversion]. Length = 458

>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN; Validated

 Score = 62.3 bits (151), Expect = 4e-11
 Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 109 TEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVE 168
           T GL  GQ V       ++PVG   LGR+I+  G P+D R   D           P  V 
Sbjct: 73  TIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWKDYDAMPPPAMVR 132

Query: 169 MSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228
             + Q  L+TGI+ +D +A   +G ++G+F   GVGK+ L+  L N         +V   
Sbjct: 133 QPITQP-LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN---APDADSNVLVL 188

Query: 229 VGERTRE 235
           +GER RE
Sbjct: 189 IGERGRE 195

Length = 433

>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated

 Score = 61.5 bits (149), Expect = 6e-11
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 8/143 (5%)

Query: 109 TEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVE 168
           TE +  G  V      + IP G   LG++++  GE ++E    +      I  DAP    
Sbjct: 73  TEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNE--EAENIPLQKIKLDAPPIHA 130

Query: 169 MSVEQ--EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 226
              E+  ++  TGIK +D +     G KIG+F G+GVGK+ L+  +  N   A    +V 
Sbjct: 131 FEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKN---AKADINVI 187

Query: 227 AGVGERTREGND-LYHEMIESGV 248
           + VGER RE  D +  E+ E G+
Sbjct: 188 SLVGERGREVKDFIRKELGEEGM 210

Length = 432

>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 108 GTEGL-VRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
           GT GL ++   V  +G P+K+PV  + LGRI + +G PID    I  +K   I+      
Sbjct: 58  GTTGLDLKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINP 117

Query: 167 VEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-- 224
           V     +E + TGI  +D L    +G K+ +F G+G+    L  ++    AK  G     
Sbjct: 118 VAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIARQ-AKVLGEEENF 176

Query: 225 --VFAGVGERTREGNDLYHEMIESGVIS 250
             VFA +G    E N    +  E+G + 
Sbjct: 177 AVVFAAMGITFEEANFFMEDFEETGALE 204

Length = 460

>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 6/148 (4%)

Query: 108 GTEGL-VRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
           GT GL  +G  V  +G  +KIPV  + LGRI N  G+PID    I  +    I+      
Sbjct: 61  GTSGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINP 120

Query: 167 VEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-- 224
                 +E + TGI  +D +    +G K+ +F G+G+    L  + I   A   G     
Sbjct: 121 YARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQ-IARQATVDGEEEEF 179

Query: 225 --VFAGVGERTREGNDLYHEMIESGVIS 250
             VFA +G    E      E  E+G + 
Sbjct: 180 AVVFAAMGITHEEALFFMDEFEETGALD 207

Length = 463

>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated

 Score = 58.4 bits (141), Expect = 9e-10
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 84  RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGE 143
           +SP ++ EV       T+  +++     +  G  V     P  + +    LGR+++  G 
Sbjct: 50  KSPPILAEVIGFHNRTTL-LMSLSPIHYVALGAEVLPLRRPPSLHLSDHLLGRVLDGFGN 108

Query: 144 PIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV 203
           P+D +  +       + +  P  +     QEI  TGIK +D      KG +IG+F   G 
Sbjct: 109 PLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGS 168

Query: 204 GKTVLIMELINNVAK-AHGGYSVFAGVGERTREGND 238
           GK+     L++ +AK +    +V A +GER RE  +
Sbjct: 169 GKS----SLLSTIAKGSKSTINVIALIGERGREVRE 200

Length = 434

>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 111 GLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMS 170
           G++ G  V  S    ++ +G   LGR+IN +GEP+D +G +               ++  
Sbjct: 74  GVLGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRR 133

Query: 171 VEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 230
                L  G+  ++ L    KG ++GL  G+GVGK+VL + +I    +A     V   +G
Sbjct: 134 AVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVL-LGMITRYTQAD--VVVVGLIG 190

Query: 231 ERTRE 235
           ER RE
Sbjct: 191 ERGRE 195

Length = 434

>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 3/126 (2%)

Query: 110 EGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEM 169
            G+  G  V    +  ++P+G   LGR+++  G  +D +GP+  +    +       +  
Sbjct: 86  AGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNR 145

Query: 170 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 229
               E L  GI+ ++ L    +G ++GLF G GVGK+VL + ++    +A     V   +
Sbjct: 146 HPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVL-LGMMTRFTEAD--IIVVGLI 202

Query: 230 GERTRE 235
           GER RE
Sbjct: 203 GERGRE 208

Length = 451

>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 1/141 (0%)

Query: 92  VAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI 151
           +A +L  N V  + M     +  G  V  +G   +IPV    LGR++N + +PID +G I
Sbjct: 41  IALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEI 100

Query: 152 DTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 211
              +S  I + AP  +      E L TG+  +D + P  +G +  + G    GKT +  +
Sbjct: 101 SASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATD 160

Query: 212 LINNVAKAHGGYSVFAGVGER 232
            I N  K      V+  +G++
Sbjct: 161 TILN-QKGQNVICVYVAIGQK 180

Length = 485

>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic) subunit B

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVV 183
            +K+PV  + LGRI N  G+PID    I  ++   I+      V     +E++ TGI  +
Sbjct: 1   TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAI 60

Query: 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS----VFAGVGERTREGNDL 239
           D +    +G KI +F G+G+    L  ++    A   G       VFA +G    +    
Sbjct: 61  DGMNTLVRGQKIPIFSGSGLPHNELAAQIARQ-AGVVGEEENFAVVFAAMGITMEDARFF 119

Query: 240 YHEMIESGVIS 250
             +  E+G + 
Sbjct: 120 KDDFEETGALE 130

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit. Length = 276

>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional

 Score = 53.5 bits (128), Expect = 4e-08
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 14/143 (9%)

Query: 104 IAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPID------ERGPIDTDKS- 156
           I MD    +  GQ V  +G  + IPVGA  LG+++N +G  +        R  ++++++ 
Sbjct: 94  ILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTL 153

Query: 157 AAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN- 215
             + A AP  V  S     L+TG K VD + P  +G +  + G    GKT + +  I N 
Sbjct: 154 GKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQ 213

Query: 216 ------VAKAHGGYSVFAGVGER 232
                 +   +   S++  +G+R
Sbjct: 214 VRINQQILSKNAVISIYVSIGQR 236

Length = 574

>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 89  VLEVAQHLGENTVRTIAMDGTEGL-VRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDE 147
           VLEV+   G   V  +  +GT G+  +      +G+ ++ PV  + LGR+ N  G+PID+
Sbjct: 41  VLEVS---GNKAVVQV-FEGTSGIDAKKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 96

Query: 148 RGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV 203
             P+  +    I+            +E++ TGI  +D++   A+G KI +F  AG+
Sbjct: 97  GPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 152

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 466

>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 12/141 (8%)

Query: 106 MDGTEGLVRGQVV-------ADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAA 158
           ++  EG++ G  V           +  ++P+G   LGR+++  G+P+D     DT ++ A
Sbjct: 82  LEEVEGILPGARVYARNISGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGA 141

Query: 159 IHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK 218
           +       ++ +  + +L TG++ ++ L    +G ++GLF G+GVGK+V    L+  +A+
Sbjct: 142 LITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSV----LLGMMAR 197

Query: 219 AHGGYSVFAG-VGERTREGND 238
                 +  G +GER RE  D
Sbjct: 198 YTQADVIVVGLIGERGREVKD 218

Length = 455

>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 240
            I +FG  G GKT L ++L  N+A   GG  V+  + E   E  +  
Sbjct: 1   LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERL 46

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Length = 165

>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 108 GTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFV 167
           GT G+  G  V   G P+++      LGR  N  G+PID  GP    +   I   +   V
Sbjct: 57  GTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPID-GGPELEGEPIEIGGPSVNPV 115

Query: 168 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 202
           +  V +E++ TGI ++D+     +  KI +F  +G
Sbjct: 116 KRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSG 150

Length = 436

>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 173 QEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 232
           +  LVTG +V+D L P AKGG   + G  G GKTV    L      A G   ++ G GER
Sbjct: 205 EIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTVSQHTLSKL---ADGDIVIYVGCGER 261

Query: 233 TREGNDLYHEMIESGVISLKD 253
             E  ++  E  E     LKD
Sbjct: 262 GNEMTEVLQEFPE-----LKD 277

Length = 588

>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 20/77 (25%)

Query: 174 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAG 228
           E L+TG +V+D   P AKGG   + G  G GKTV   +L    AK    ++     ++ G
Sbjct: 209 EPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQHQL----AK----WADADIVIYVG 260

Query: 229 VGERTREGNDLYHEMIE 245
            GER   GN    EM E
Sbjct: 261 CGER---GN----EMTE 270

Length = 586

>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 20/77 (25%)

Query: 174 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAG 228
           E L+TG +V+D L P  KGG   + G  G GKTV+   L    +K    YS     ++ G
Sbjct: 139 EPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSL----SK----YSNSDIVIYVG 190

Query: 229 VGERTREGNDLYHEMIE 245
            GER   GN    EM E
Sbjct: 191 CGER---GN----EMTE 200

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. Length = 369

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 14/61 (22%), Positives = 19/61 (31%)

Query: 191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
            G  I + G  G GKT L   L   +    GG     G        + L   ++     S
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60

Query: 251 L 251
            
Sbjct: 61  G 61

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 166 FVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYS 224
           + E    +  L+TG +++D   P AKGG   + G  G GKTV   +L    AK +     
Sbjct: 196 YKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVTQHQL----AKWSDADIV 251

Query: 225 VFAGVGERTREGNDLYHE 242
           V+ G GER  E  D+  E
Sbjct: 252 VYIGCGERGNEMTDVLEE 269

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases [Energy metabolism, ATP-proton motive force interconversion]. Length = 578

>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 176 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV----LIMELINNVAKAHGGYSVFAGVGE 231
           L+TG +V+D   P AKGG   + G  G GK V    LI+     + K    Y +  G G+
Sbjct: 211 LITGQRVIDTFFPQAKGGTAAIPGPFGSGKCVDGDTLILTKEFGLIKIKDLYEILDGKGK 270

Query: 232 RTREGNDLYHEMIE 245
           +T EGN+ + E+ E
Sbjct: 271 KTVEGNEEWTELEE 284

Length = 1017

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
KOG1350|consensus	521		100.0
COG0055	468	AtpD F0F1-type ATP synthase, beta subunit [Energy	100.0
CHL00060	494	atpB ATP synthase CF1 beta subunit	100.0
TIGR03305	449	alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit	100.0
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	100.0
COG1157	441	FliI Flagellar biosynthesis/type III secretory pat	100.0
PRK09280	463	F0F1 ATP synthase subunit beta; Validated	100.0
PRK02118	436	V-type ATP synthase subunit B; Provisional	100.0
TIGR01039	461	atpD ATP synthase, F1 beta subunit. The sequences	100.0
PRK04196	460	V-type ATP synthase subunit B; Provisional	100.0
TIGR01041	458	ATP_syn_B_arch ATP synthase archaeal, B subunit. A	100.0
TIGR03324	497	alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a	100.0
PRK09281	502	F0F1 ATP synthase subunit alpha; Validated	100.0
CHL00059	485	atpA ATP synthase CF1 alpha subunit	100.0
TIGR00962	501	atpA proton translocating ATP synthase, F1 alpha s	100.0
PRK13343	502	F0F1 ATP synthase subunit alpha; Provisional	100.0
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	100.0
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	100.0
PRK07165	507	F0F1 ATP synthase subunit alpha; Validated	100.0
TIGR01040	466	V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th	100.0
PRK06936	439	type III secretion system ATPase; Provisional	100.0
TIGR01042	591	V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. Th	100.0
TIGR01043	578	ATP_syn_A_arch ATP synthase archaeal, A subunit. A	100.0
PTZ00185	574	ATPase alpha subunit; Provisional	100.0
PRK04192	586	V-type ATP synthase subunit A; Provisional	100.0
PRK05922	434	type III secretion system ATPase; Validated	100.0
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	100.0
PRK09099	441	type III secretion system ATPase; Provisional	100.0
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	100.0
PRK06820	440	type III secretion system ATPase; Validated	100.0
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	100.0
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	100.0
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	100.0
PRK08149	428	ATP synthase SpaL; Validated	100.0
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	100.0
PRK07594	433	type III secretion system ATPase SsaN; Validated	100.0
PRK06315	442	type III secretion system ATPase; Provisional	100.0
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	100.0
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	100.0
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	100.0
cd01135	276	V_A-ATPase_B V/A-type ATP synthase (non-catalytic)	100.0
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	100.0
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	100.0
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	100.0
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	100.0
COG0056	504	AtpA F0F1-type ATP synthase, alpha subunit [Energy	100.0
cd01132	274	F1_ATPase_alpha F1 ATP synthase alpha, central dom	100.0
COG1156	463	NtpB Archaeal/vacuolar-type H+-ATPase subunit B [E	100.0
COG1155	588	NtpA Archaeal/vacuolar-type H+-ATPase subunit A [E	100.0
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	99.96
cd01134	369	V_A-ATPase_A V/A-type ATP synthase catalytic subun	99.96
KOG1351|consensus	489		99.96
PRK14698	1017	V-type ATP synthase subunit A; Provisional	99.96
KOG1352|consensus	618		99.96
PRK12608	380	transcription termination factor Rho; Provisional	99.94
KOG1353|consensus	340		99.9
PF00006	215	ATP-synt_ab: ATP synthase alpha/beta family, nucle	99.86
PRK12678	672	transcription termination factor Rho; Provisional	99.84
PRK09376	416	rho transcription termination factor Rho; Provisio	99.82
COG1158	422	Rho Transcription termination factor [Transcriptio	99.55
TIGR00767	415	rho transcription termination factor Rho. Members	99.54
cd01128	249	rho_factor Transcription termination factor rho is	99.47
PF02874	69	ATP-synt_ab_N: ATP synthase alpha/beta family, bet	98.8
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.71
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.65
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.65
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.65
PRK04328	249	hypothetical protein; Provisional	97.54
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.51
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.46
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.45
PRK06067	234	flagellar accessory protein FlaH; Validated	97.4
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	97.38
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.38
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.35
PRK09302	509	circadian clock protein KaiC; Reviewed	97.31
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.25
PRK09302	509	circadian clock protein KaiC; Reviewed	97.03
smart00382	148	AAA ATPases associated with a variety of cellular	97.01
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.96
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.9
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.88
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.88
PRK09354	349	recA recombinase A; Provisional	96.87
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.83
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.81
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.76
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	96.75
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.7
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.7
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.61
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.56
PTZ00035	337	Rad51 protein; Provisional	96.55
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.54
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	96.49
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.48
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.48
PRK11823	446	DNA repair protein RadA; Provisional	96.47
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.44
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.42
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.41
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.39
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.36
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.35
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.34
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.34
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	96.33
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.33
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.32
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.32
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.31
PRK04301	317	radA DNA repair and recombination protein RadA; Va	96.31
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.31
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.3
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.3
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.29
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.29
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.29
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	96.29
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.27
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.26
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.26
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.23
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.23
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.23
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.23
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.23
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.22
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	96.21
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	96.21
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.2
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.19
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.18
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.18
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.18
TIGR00665	434	DnaB replicative DNA helicase. This model describe	96.18
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	96.17
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	96.17
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.17
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.17
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.17
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.16
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.15
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.15
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.15
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.15
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	96.14
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.14
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	96.13
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.12
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	96.11
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	96.11
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.1
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.1
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.09
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	96.09
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.08
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	96.08
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.08
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.07
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.07
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	96.06
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.06
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.06
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.06
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.06
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.05
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.04
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.03
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.03
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	96.02
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.01
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.01
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	96.01
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	95.99
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	95.98
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	95.97
cd03246	173	ABCC_Protease_Secretion This family represents the	95.97
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	95.97
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.96
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	95.96
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	95.96
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	95.96
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.95
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	95.95
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	95.94
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	95.94
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	95.94
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	95.93
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	95.93
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.93
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	95.93
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	95.93
PRK10908	222	cell division protein FtsE; Provisional	95.93
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	95.93
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	95.92
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	95.92
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	95.92
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	95.92
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	95.92
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	95.9
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	95.9
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	95.9
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	95.9
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.9
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	95.9
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	95.9
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	95.88
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	95.88
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	95.87
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	95.87
TIGR02237	209	recomb_radB DNA repair and recombination protein R	95.87
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	95.86
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	95.85
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	95.85
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	95.85
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	95.85
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	95.84
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	95.84
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	95.84
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	95.84
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	95.83
COG1127	263	Ttg2A ABC-type transport system involved in resist	95.83
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	95.83
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	95.82
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	95.82
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	95.82
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.82
KOG0057|consensus	591		95.82
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	95.81
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	95.81
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	95.81
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	95.8
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	95.8
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	95.8
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	95.8
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.8
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	95.79
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	95.79
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	95.78
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	95.78
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	95.78
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	95.78
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	95.78
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	95.78
PRK08118	167	topology modulation protein; Reviewed	95.77
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.77
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	95.76
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	95.76
PRK07261	171	topology modulation protein; Provisional	95.76
PRK09519	790	recA DNA recombination protein RecA; Reviewed	95.76
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	95.76
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	95.75
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.75
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	95.75
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	95.74
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	95.74
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	95.74
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	95.74
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	95.74
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	95.72
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	95.71
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.71
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	95.71
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	95.7
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	95.7
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	95.7
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	95.7
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	95.7
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	95.69
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	95.68
cd03234	226	ABCG_White The White subfamily represents ABC tran	95.67
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	95.67
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	95.67
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	95.66
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	95.66
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.66
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	95.66
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	95.66
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	95.65
PRK09984	262	phosphonate/organophosphate ester transporter subu	95.64
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	95.63
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	95.63
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	95.62
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	95.62
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	95.62
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.61
cd03299	235	ABC_ModC_like Archeal protein closely related to M	95.61
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	95.61
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	95.6
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	95.59
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	95.59
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	95.59
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	95.58
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	95.57
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	95.56
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.56
PRK13546	264	teichoic acids export protein ATP-binding subunit;	95.55
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	95.55
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	95.55
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.55
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	95.55
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	95.55
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	95.55
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	95.53
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	95.53
COG4172	534	ABC-type uncharacterized transport system, duplica	95.52
PRK05748	448	replicative DNA helicase; Provisional	95.52
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.52
COG4987	573	CydC ABC-type transport system involved in cytochr	95.52
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	95.51
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	95.51
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	95.51
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	95.5
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	95.49
COG4181	228	Predicted ABC-type transport system involved in ly	95.48
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	95.48
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	95.47
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	95.47
PRK05973	237	replicative DNA helicase; Provisional	95.47
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	95.45
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	95.45
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	95.44
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	95.43
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	95.4
PRK03695	248	vitamin B12-transporter ATPase; Provisional	95.4
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	95.4
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	95.4
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	95.4
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	95.39
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	95.39
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	95.38
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	95.37
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	95.36
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	95.35
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	95.35
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	95.34
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	95.3
PRK13536	340	nodulation factor exporter subunit NodI; Provision	95.3
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	95.3
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	95.29
PRK13537	306	nodulation ABC transporter NodI; Provisional	95.29
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	95.28
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	95.28
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	95.28
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	95.27
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.26
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	95.23
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	95.22
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	95.21
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.18
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	95.18
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.17
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	95.17
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	95.17
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	95.16
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	95.16
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	95.16
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.16
PLN03073	718	ABC transporter F family; Provisional	95.14
PRK08084	235	DNA replication initiation factor; Provisional	95.1
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	95.07
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	95.07
PF13245	76	AAA_19: Part of AAA domain	95.06
PRK11147	635	ABC transporter ATPase component; Reviewed	95.05
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	95.04
TIGR00235	207	udk uridine kinase. Model contains a number of lon	95.04
PRK00300	205	gmk guanylate kinase; Provisional	95.03
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	95.01
PRK08727	233	hypothetical protein; Validated	95.01
PRK15064	530	ABC transporter ATP-binding protein; Provisional	95.01
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	94.99
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	94.97
COG1123	539	ATPase components of various ABC-type transport sy	94.97
PHA02542	473	41 41 helicase; Provisional	94.96
PRK10522	547	multidrug transporter membrane component/ATP-bindi	94.94
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	94.93
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	94.92
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	94.92
PF05729	166	NACHT: NACHT domain	94.92
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	94.91
PRK10938	490	putative molybdenum transport ATP-binding protein	94.91
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	94.89
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	94.88
PRK08233	182	hypothetical protein; Provisional	94.87
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	94.87
PF12846	304	AAA_10: AAA-like domain	94.84
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	94.84
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	94.83
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	94.82
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	94.8
PRK08506	472	replicative DNA helicase; Provisional	94.79
COG4525	259	TauB ABC-type taurine transport system, ATPase com	94.78
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	94.77
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	94.76
PRK15064	530	ABC transporter ATP-binding protein; Provisional	94.75
PRK10261	623	glutathione transporter ATP-binding protein; Provi	94.73
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	94.71
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	94.7
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	94.7
PRK09165	497	replicative DNA helicase; Provisional	94.7
PRK05595	444	replicative DNA helicase; Provisional	94.69
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	94.68
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	94.68
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	94.68
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	94.67
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	94.65
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	94.65
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	94.64
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	94.64
PF00154	322	RecA: recA bacterial DNA recombination protein; In	94.64
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	94.61
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	94.61
PRK06217	183	hypothetical protein; Validated	94.6
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	94.6
PRK08760	476	replicative DNA helicase; Provisional	94.6
PRK05480	209	uridine/cytidine kinase; Provisional	94.59
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	94.59
COG4136	213	ABC-type uncharacterized transport system, ATPase	94.58
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	94.58
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	94.57
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	94.57
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	94.56
PF00004	132	AAA: ATPase family associated with various cellula	94.51
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	94.5
PTZ00243	1560	ABC transporter; Provisional	94.49
COG0488	530	Uup ATPase components of ABC transporters with dup	94.48
PRK14531	183	adenylate kinase; Provisional	94.47
PRK11147	635	ABC transporter ATPase component; Reviewed	94.46
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	94.44
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	94.43
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	94.43
PRK09183	259	transposase/IS protein; Provisional	94.42
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	94.41
PRK06893	229	DNA replication initiation factor; Validated	94.41
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	94.39
PRK14530	215	adenylate kinase; Provisional	94.38
PRK05642	234	DNA replication initiation factor; Validated	94.37
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	94.36
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	94.35
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	94.35
COG4988	559	CydD ABC-type transport system involved in cytochr	94.34
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	94.31
PRK10938	490	putative molybdenum transport ATP-binding protein	94.3
PRK08840	464	replicative DNA helicase; Provisional	94.3
PRK10416	318	signal recognition particle-docking protein FtsY;	94.28
COG0488	530	Uup ATPase components of ABC transporters with dup	94.28
PRK07004	460	replicative DNA helicase; Provisional	94.27
PRK13409	590	putative ATPase RIL; Provisional	94.26
PRK10261	623	glutathione transporter ATP-binding protein; Provi	94.25
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	94.23
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	94.23
COG4586	325	ABC-type uncharacterized transport system, ATPase	94.23
PF13173	128	AAA_14: AAA domain	94.23
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	94.22
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	94.22
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	94.2
PRK09825	176	idnK D-gluconate kinase; Provisional	94.16
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	94.15
PRK07773	886	replicative DNA helicase; Validated	94.09
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	94.07
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	94.06
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	94.05
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	94.04
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	93.99
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	93.99
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	93.97
PLN03232	1495	ABC transporter C family member; Provisional	93.97
PHA00729	226	NTP-binding motif containing protein	93.95
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	93.93
PRK05636	505	replicative DNA helicase; Provisional	93.93
PLN03073	718	ABC transporter F family; Provisional	93.91
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	93.88
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	93.88
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	93.86
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	93.83
PRK06904	472	replicative DNA helicase; Validated	93.82
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	93.79
PLN03130	1622	ABC transporter C family member; Provisional	93.76
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	93.74
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	93.73
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	93.72
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	93.71
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	93.71
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	93.64
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	93.64
COG0411	250	LivG ABC-type branched-chain amino acid transport	93.63
PF14516	331	AAA_35: AAA-like domain	93.61
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	93.61
PRK08006	471	replicative DNA helicase; Provisional	93.57
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	93.56
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	93.55
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	93.55
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	93.52
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	93.52
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	93.52
PTZ00301	210	uridine kinase; Provisional	93.51
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	93.49

>KOG1350|consensus

Probab=100.00  E-value=1.2e-58  Score=426.85  Aligned_cols=216  Identities=83%  Similarity=1.251  Sum_probs=212.5

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccC
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPV  129 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vpv  129 (266)
                      ....|+|++|+|.+++|+|+++.|+|+|.+++.+++.++.+||.+|+|+|+++++.|++|+||.+|++|.++|.|++|||
T Consensus        49 ~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipV  128 (521)
T KOG1350|consen   49 KKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISIPV  128 (521)
T ss_pred             cccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCceeeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCceeeec
Confidence            44689999999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             ChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHH
Q psy17544        130 GAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI  209 (266)
Q Consensus       130 G~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~  209 (266)
                      |++.||||+|.+|+|+|+++|+....+.|||+++|.+.+.....|.|.||||++|+|.|+.||+|||+|||+|+|||+|+
T Consensus       129 G~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlI  208 (521)
T KOG1350|consen  129 GPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI  208 (521)
T ss_pred             CHHHHhhHHHhcCCcccccCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccceeeH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        210 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       210 ~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +++|+|.+++|++++||+++|||.||.+|+|+||+|+|||+|++.+||++||||||
T Consensus       209 mELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~l~~~~SKvaLV~GQM  264 (521)
T KOG1350|consen  209 MELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLEGETSKVALVYGQM  264 (521)
T ss_pred             HHHHHHHHHhcCCeEEeeccccccccccHHHHHHHhcCeeeccCCcceEEEEeecc
Confidence            99999999999999999999999999999999999999999999999999999999

>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]

Probab=100.00  E-value=3.1e-54  Score=403.74  Aligned_cols=208  Identities=69%  Similarity=1.098  Sum_probs=199.8

Q ss_pred             cccEEEEEECcEEEEEecC--CCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcccc
Q psy17544         52 GNGRVVAVIGAVVDVQFDH--DLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIP  128 (266)
Q Consensus        52 ~~GrV~~I~G~vV~v~~~~--~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vp  128 (266)
                      ..|+|++|.|+||+|+|+.  .+|.|++.++++.... .+.+||.+++|++.|++++|+.++||.+|+.|..||+|++||
T Consensus         2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP   81 (468)
T COG0055           2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP   81 (468)
T ss_pred             CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEe
Confidence            3699999999999999973  5999999999987532 589999999999999999999999999999999999999999


Q ss_pred             CChhhhhhhhcccCccccCCCCCCCC--CccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHH
Q psy17544        129 VGAETLGRIINVIGEPIDERGPIDTD--KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT  206 (266)
Q Consensus       129 vG~~lLGRViD~~G~PlD~~~~~~~~--~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT  206 (266)
                      ||+.+||||+|++|+|||+.+|+...  .+||||.++|...+...-.|.|+||||+||+|.|+.||+|+|+|||+|+|||
T Consensus        82 VG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKT  161 (468)
T COG0055          82 VGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT  161 (468)
T ss_pred             cchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccce
Confidence            99999999999999999999998866  8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        207 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       207 ~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +|+++||+|.++.|++++||+++|||.||.+|||+||+++|+++      ||+||||||
T Consensus       162 Vl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~------ktalv~gQM  214 (468)
T COG0055         162 VLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLD------KTALVFGQM  214 (468)
T ss_pred             eeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCCC------ceeEEEeec
Confidence            99999999999999999999999999999999999999999998      999999999

>CHL00060 atpB ATP synthase CF1 beta subunit

Probab=100.00  E-value=2.4e-52  Score=406.50  Aligned_cols=216  Identities=59%  Similarity=0.970  Sum_probs=198.5

Q ss_pred             CccccEEEEEECcEEEEEecC-CCcccccEEEEecCC--C---ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCC
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDH-DLPPILNALEVEGRS--P---RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGN  123 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~-~~p~ig~~~~v~~~~--~---~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~  123 (266)
                      .+..|+|++|.|.++++.|+. .+|.+++.|++...+  +   .+.+||++|.+++.+++++|++++||+.|++|.++++
T Consensus        13 ~~~~G~V~~v~G~viev~~~~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~tg~   92 (494)
T CHL00060         13 EKNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGA   92 (494)
T ss_pred             cccceEEEEEEccEEEEEecCCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeCCC
Confidence            456899999999999999984 578889999995422  2   4789999999879999999999999999999999999


Q ss_pred             CccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544        124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV  203 (266)
Q Consensus       124 ~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~  203 (266)
                      +++||+|++|||||+|++|+|||+.+++...+++|++..||+|++|.++++||+||||+||+|+|||||||+||||++|+
T Consensus        93 ~~~vpvg~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~Gv  172 (494)
T CHL00060         93 PLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGV  172 (494)
T ss_pred             cceeecchhhcCCEEeecCcccCCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeeecCCCC
Confidence            99999999999999999999999998877777889999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcccc-CCCCCceEEEeecc
Q psy17544        204 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISL-KDKSSKVNFLFNSR  265 (266)
Q Consensus       204 GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~-~~~~~~~~~v~~q~  265 (266)
                      |||+|+.|+++|+++++++++||++||||+||++||++++.++++++- ....+|+++|++|+
T Consensus       173 GKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~ats  235 (494)
T CHL00060        173 GKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQM  235 (494)
T ss_pred             ChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECC
Confidence            999999999999877766799999999999999999999999998862 23477999999986

>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta

Probab=100.00  E-value=2.9e-52  Score=403.11  Aligned_cols=205  Identities=46%  Similarity=0.798  Sum_probs=194.1

Q ss_pred             cEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChhh
Q psy17544         54 GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAET  133 (266)
Q Consensus        54 GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~l  133 (266)
                      |+|++|+|+||+|+|+..+|.+++.+.+.. +..+.+||+++++++.+++++|++++||+.|++|.+++++++||+|++|
T Consensus         1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~-~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~l   79 (449)
T TIGR03305         1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGR-EGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPT   79 (449)
T ss_pred             CeEEEEEcCEEEEEeCCCCcchhheEEecC-CCcEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhh
Confidence            899999999999999877999999999864 4568899999889999999999999999999999999999999999999


Q ss_pred             hhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544        134 LGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       134 LGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii  213 (266)
                      ||||+|++|+|||+.+++...+++|++++||||++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++++
T Consensus        80 LGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~  159 (449)
T TIGR03305        80 LSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMI  159 (449)
T ss_pred             cCCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHHHH
Confidence            99999999999999988777778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        214 NNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       214 ~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +|+++.|.+++||++||||+||++||++++.+.++++      |+++|++++
T Consensus       160 ~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~------rtvvv~~ts  205 (449)
T TIGR03305       160 HNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLD------NTVMVFGQM  205 (449)
T ss_pred             HHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccc------eEEEEEeCC
Confidence            9976555679999999999999999999999999998      999999986

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=100.00  E-value=1.4e-51  Score=399.89  Aligned_cols=208  Identities=54%  Similarity=0.907  Sum_probs=194.2

Q ss_pred             cccEEEEEECcEEEEEecCC-CcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCC
Q psy17544         52 GNGRVVAVIGAVVDVQFDHD-LPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG  130 (266)
Q Consensus        52 ~~GrV~~I~G~vV~v~~~~~-~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG  130 (266)
                      +.|+|++|.|.+++++++.+ .+++++.|++...++.+.+||+++++++.+.+++++++.||++|+.|.+|+++++||+|
T Consensus         2 ~~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg   81 (461)
T PRK12597          2 MIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVG   81 (461)
T ss_pred             CccEEEEEECcEEEEEECCCCCcCccCEEEEecCCCcEEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEcC
Confidence            47999999999999999863 24899999996533457899999988899999999999999999999999999999999


Q ss_pred             hhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHH
Q psy17544        131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM  210 (266)
Q Consensus       131 ~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~  210 (266)
                      ++|||||+|++|+|||+.+++...+++|++++||||++|.++++||+||||+||+|+|||||||+||||++|+|||||+.
T Consensus        82 ~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~Ll~  161 (461)
T PRK12597         82 EAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMM  161 (461)
T ss_pred             hhhcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHHHH
Confidence            99999999999999999988877778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        211 ELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       211 ~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +|++|+++.+.+++||++||||+|||+||++++.+.++++      |+++|++++
T Consensus       162 ~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~------rsvvv~ats  210 (461)
T PRK12597        162 ELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLD------KTVMVYGQM  210 (461)
T ss_pred             HHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcc------eeEEEecCC
Confidence            9999987666679999999999999999999999999998      999999875

>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=100.00  E-value=1.3e-51  Score=391.10  Aligned_cols=201  Identities=29%  Similarity=0.488  Sum_probs=182.6

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecCC--CceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccc
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRS--PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKI  127 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~--~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~V  127 (266)
                      ...+|+|++|.|.++++.++..  ++|+.|++....  ....+||++|. ++++.+++|++..|+.+|++|.++++++++
T Consensus        22 ~~~~G~v~~v~G~~lea~g~~~--~iGelc~i~~~~~~~~~~aEVvgf~-~~~~~L~p~~~~~gv~~g~~V~~~~~~~~v   98 (441)
T COG1157          22 YKRRGRLTRVTGLLLEAVGPQA--RIGELCKIERSRGSEKVLAEVVGFN-EERVLLMPFEPVEGVSPGAEVVPTGRPLSV   98 (441)
T ss_pred             ceEEEEEEEEeeeEEEEecCCC--cccceEEEEecCCCCceeEEEEEEc-CCeEEEeccCccccCCCCCEEEecCCcccc
Confidence            5668999999999999999976  789999888642  23399999975 578889999999999999999999999999


Q ss_pred             cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544        128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV  207 (266)
Q Consensus       128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~  207 (266)
                      ++|++|||||+|++|+|||+.+.+....+.|++.+||||+.|.+++++|.||||+||+|+|||+|||+|||++||+||||
T Consensus        99 ~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKSt  178 (441)
T COG1157          99 PVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKST  178 (441)
T ss_pred             ccChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEecCCCcHHH
Confidence            99999999999999999999888888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhH-hcCccccCCCCCceEEEee
Q psy17544        208 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI-ESGVISLKDKSSKVNFLFN  263 (266)
Q Consensus       208 L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~-~~gvl~~~~~~~~~~~v~~  263 (266)
                      ||.||++| +++|  ++|+||||||||||+||+++.. +.| ++      |+++|+.
T Consensus       179 LLgMiar~-t~aD--v~ViaLIGERGREVrEFIE~~Lg~eg-l~------rsViVvA  225 (441)
T COG1157         179 LLGMIARN-TEAD--VNVIALIGERGREVREFIEKDLGEEG-LK------RSVVVVA  225 (441)
T ss_pred             HHHHHhcc-ccCC--EEEEEEeeccchhHHHHHHHhcchhh-cc------ceEEEEE
Confidence            99999997 5776  9999999999999999998654 444 44      8888764

>PRK09280 F0F1 ATP synthase subunit beta; Validated

Probab=100.00  E-value=3.5e-51  Score=396.59  Aligned_cols=208  Identities=69%  Similarity=1.108  Sum_probs=194.1

Q ss_pred             cccEEEEEECcEEEEEecC-CCcccccEEEEe-cCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccC
Q psy17544         52 GNGRVVAVIGAVVDVQFDH-DLPPILNALEVE-GRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPV  129 (266)
Q Consensus        52 ~~GrV~~I~G~vV~v~~~~-~~p~ig~~~~v~-~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vpv  129 (266)
                      .+|||++|.|.++++.++. ..|++|+.|++. ..+..+.+||+++++++.+.++++++++||+.|+.|.++++++++|+
T Consensus         2 ~~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~v   81 (463)
T PRK09280          2 NTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVPV   81 (463)
T ss_pred             CccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEEc
Confidence            3699999999999999985 367999999994 22446899999988889999999999999999999999999999999


Q ss_pred             ChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHH
Q psy17544        130 GAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI  209 (266)
Q Consensus       130 G~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~  209 (266)
                      |++|||||+|++|+|||+.+++...++||+++++|+|++|.++++||.||||+||+|+|||||||+||||++|+|||||+
T Consensus        82 g~~lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~Ll  161 (463)
T PRK09280         82 GKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI  161 (463)
T ss_pred             ChhhcCCEEeeeccccCCCCCcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHHH
Confidence            99999999999999999998887778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        210 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       210 ~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      .|+++|+++++++++||++||||+|||+||++++.+.+.++      |+++|++++
T Consensus       162 ~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~------rsvvV~ats  211 (463)
T PRK09280        162 QELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLD------KTALVFGQM  211 (463)
T ss_pred             HHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcc------eeEEEEECC
Confidence            99999986655679999999999999999999999999988      999999875

>PRK02118 V-type ATP synthase subunit B; Provisional

Probab=100.00  E-value=2.4e-50  Score=388.08  Aligned_cols=202  Identities=20%  Similarity=0.314  Sum_probs=186.4

Q ss_pred             ccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCC
Q psy17544         51 KGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG  130 (266)
Q Consensus        51 ~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG  130 (266)
                      +.+|+|++|.|++++++++.  +++++.|++...++.+.+||+++ +++.+++++|++++||++|++|.++|++++||+|
T Consensus         3 ~~~g~v~~i~G~~v~v~~~~--~~~ge~~~i~~~~~~~~geVi~~-~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg   79 (436)
T PRK02118          3 KIYTKITDITGNVITVEAEG--VGYGELATVERKDGSSLAQVIRL-DGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYS   79 (436)
T ss_pred             ceeEEEEEEECcEEEEEeCC--CCCCCEEEEEcCCCCEEEEEEEE-cCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcC
Confidence            46899999999999999975  38999999964334578999875 7789999999999999999999999999999999


Q ss_pred             hhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHH
Q psy17544        131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM  210 (266)
Q Consensus       131 ~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~  210 (266)
                      ++|||||+|++|+|||+.+++.. +.+|++++||||++|.++++||+||||+||+|+||+||||+||||++|+|||+|+.
T Consensus        80 ~~lLGRV~d~~G~PiD~~~~~~~-~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L~~  158 (436)
T PRK02118         80 ESLLGRRFNGSGKPIDGGPELEG-EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLA  158 (436)
T ss_pred             ccccCCEEccCCcccCCCCCCCc-ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHHHH
Confidence            99999999999999999877754 45899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        211 ELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       211 ~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +|+++ ++++  ++||++||||+||++||+++|.++|+++      |++||++||
T Consensus       159 ~ia~~-~~~~--v~Vfa~iGeR~rE~~ef~~~~~~~~~l~------rtvlv~~~a  204 (436)
T PRK02118        159 RIALQ-AEAD--IIILGGMGLTFDDYLFFKDTFENAGALD------RTVMFIHTA  204 (436)
T ss_pred             HHHHh-hCCC--eEEEEEeccchhHHHHHHHHHhhCCCcc------eEEEEEECC
Confidence            99884 4544  9999999999999999999999999998      999999997

>TIGR01039 atpD ATP synthase, F1 beta subunit

Probab=100.00  E-value=2.5e-50  Score=389.95  Aligned_cols=205  Identities=67%  Similarity=1.065  Sum_probs=190.1

Q ss_pred             ccEEEEEECcEEEEEecCCCcccccEE---EEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcccc
Q psy17544         53 NGRVVAVIGAVVDVQFDHDLPPILNAL---EVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIP  128 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~---~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vp  128 (266)
                      +|+|++|.|.++++.++..  .+++.|   ++...++ .+.+||+++++++.+.+++|+++.||+.|+.|.++++++++|
T Consensus         2 ~G~v~~v~g~~ie~~~~~~--~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~   79 (461)
T TIGR01039         2 KGKVVQVIGPVVDVEFEQG--ELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVP   79 (461)
T ss_pred             ccEEEEEEeeEEEEEECCC--CCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEE
Confidence            5999999999999999964  577777   8843233 488999997888999999999999999999999999999999


Q ss_pred             CChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHH
Q psy17544        129 VGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL  208 (266)
Q Consensus       129 vG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L  208 (266)
                      +|++|||||+|++|+|||+.+++....+||++.+||+|++|.++++||+||||+||+|+|||||||+||||++|+|||||
T Consensus        80 vg~~lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L  159 (461)
T TIGR01039        80 VGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL  159 (461)
T ss_pred             cChhhcCCEEccCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHH
Confidence            99999999999999999999887766788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        209 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       209 ~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +.++++|+++++++++||++||||+|||+||++++.+.++++      |+++|++++
T Consensus       160 ~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~------rtvvV~ats  210 (461)
T TIGR01039       160 IQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVID------KTALVYGQM  210 (461)
T ss_pred             HHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcc------eeEEEEECC
Confidence            999999986666679999999999999999999999999988      999999986

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.

>PRK04196 V-type ATP synthase subunit B; Provisional

Probab=100.00  E-value=6.6e-49  Score=381.77  Aligned_cols=206  Identities=26%  Similarity=0.368  Sum_probs=188.5

Q ss_pred             ccccEEEEEECcEEEEEecCCCcccccEEEEec-CCCceEEEEeeeeCCceeEEEeccCCCCCC-CCCEEEecCCCcccc
Q psy17544         51 KGNGRVVAVIGAVVDVQFDHDLPPILNALEVEG-RSPRLVLEVAQHLGENTVRTIAMDGTEGLV-RGQVVADSGNPIKIP  128 (266)
Q Consensus        51 ~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~-~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~-~G~~V~~tg~~~~Vp  128 (266)
                      ..||+|++|.|.+++++++..+ .+++.|++.. .+..+.+||+++. ++.+.+++|+++.||+ .|++|.+||++++||
T Consensus         2 ~~yg~V~~i~g~~v~v~g~~~~-~~ge~~~i~~~~~~~~~geVi~~~-~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~   79 (460)
T PRK04196          2 KEYRTVSEIKGPLLFVEGVEGV-AYGEIVEIELPNGEKRRGQVLEVS-EDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLP   79 (460)
T ss_pred             ceeEEEEEEECcEEEEeccCCC-CCCCEEEEEcCCCCEEEEEEEEEe-CCeEEEEEccCCCCCCCCCCEEEeCCCccEEE
Confidence            3589999999999999998654 8999999953 2334789999975 5788899999999999 899999999999999


Q ss_pred             CChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHH
Q psy17544        129 VGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL  208 (266)
Q Consensus       129 vG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L  208 (266)
                      +|++|||||+|++|+|||+.+++....++|+++.||+|++|.++++||.||||+||+|+|||||||+||||++|+|||+|
T Consensus        80 vg~~lLGRVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L  159 (460)
T PRK04196         80 VSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNEL  159 (460)
T ss_pred             cCcccccCEECccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCccHH
Confidence            99999999999999999999888777788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC----CcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        209 IMELINNVAKAH----GGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       209 ~~~ii~~~a~~~----~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +.+|+++ +++|    +.+|||++||||+||++||+++|.+.++|+      ||++|+++.
T Consensus       160 ~~~ia~~-~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~------rtvvV~ats  213 (460)
T PRK04196        160 AAQIARQ-AKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALE------RSVVFLNLA  213 (460)
T ss_pred             HHHHHHh-hhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcc------eEEEEEEcC
Confidence            9998885 5554    349999999999999999999999999988      999999874

>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit

Probab=100.00  E-value=1.3e-48  Score=379.21  Aligned_cols=204  Identities=25%  Similarity=0.355  Sum_probs=186.7

Q ss_pred             ccEEEEEECcEEEEEecCCCcccccEEEEec-CCCceEEEEeeeeCCceeEEEeccCCCCCCCCCE-EEecCCCccccCC
Q psy17544         53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEG-RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQV-VADSGNPIKIPVG  130 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~-~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~-V~~tg~~~~VpvG  130 (266)
                      |++|++|.|.+++++++..+ .+++.|++.. .+..+.+||+++. ++.+.+++|+++.||++|+. |.+|+++++||+|
T Consensus         2 y~~v~~i~g~iv~v~g~~~~-~~ge~~~i~~~~~~~~~geVv~~~-~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg   79 (458)
T TIGR01041         2 YSTITEIAGPLVFVEGVEPV-AYNEIVEIETPDGEKRRGQVLDSS-EGLAVVQVFEGTTGLDPTGTKVRFTGETLKLPVS   79 (458)
T ss_pred             ccEEEEEEccEEEEEccCCC-CcCCEEEEEcCCCcEEEEEEEEEE-CCEEEEEEecCCcCcCCCCcEEEECCCceEEEcC
Confidence            78999999999999998554 8999999953 2334789999975 57899999999999999987 9999999999999


Q ss_pred             hhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHH
Q psy17544        131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM  210 (266)
Q Consensus       131 ~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~  210 (266)
                      ++|||||+|++|+|||+.+++....++|+++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|+.
T Consensus        80 ~~lLGRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~  159 (458)
T TIGR01041        80 EDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAA  159 (458)
T ss_pred             hhhccCEEccCCcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHHHHH
Confidence            99999999999999999988877778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC----CcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        211 ELINNVAKAH----GGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       211 ~ii~~~a~~~----~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ||+++ +++|    +.++||++||||+||++||++++.+.++++      |+++|++++
T Consensus       160 ~ia~~-~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~------rtvvv~ats  211 (458)
T TIGR01041       160 QIARQ-ATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALE------RAVVFLNLA  211 (458)
T ss_pred             HHHHh-hcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcc------eEEEEEECC
Confidence            98885 5554    239999999999999999999999999988      999999875

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha

Probab=100.00  E-value=1.3e-48  Score=380.78  Aligned_cols=211  Identities=21%  Similarity=0.357  Sum_probs=188.4

Q ss_pred             ccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEe
Q psy17544         41 HYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVAD  120 (266)
Q Consensus        41 ~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~  120 (266)
                      +|..+  +..+.+|+|++|.|.++++++...+ .+++.|++.  + .+.+||+++ +++.+.+++|+++.||+.|+.|.+
T Consensus        18 ~~~~~--~~~~~~G~V~~v~g~ii~v~gl~~~-~~gEl~~i~--~-~~~g~Vi~l-~~~~v~~~~l~~~~gi~~G~~V~~   90 (497)
T TIGR03324        18 SFQPQ--LTVQEVGTVESVSTGIARVHGLPGV-GFEELLRFP--G-GLLGIAFNV-DEDEVGVVLLGEYSHLQAGDEVER   90 (497)
T ss_pred             hcCCC--cceeEEEEEEEEeceEEEEEccCCC-CcCCEEEEC--C-CcEEEEEEE-cCCeEEEEEecCCcCCcCCCEEEE
Confidence            55553  3356689999999999999995544 899999994  2 378999995 668999999999999999999999


Q ss_pred             cCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecC
Q psy17544        121 SGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG  200 (266)
Q Consensus       121 tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg  200 (266)
                      ||++++||+|++|||||+|++|+|||+.+++....++|++.+||++++|.++++||+||||+||+|+|||||||+||||+
T Consensus        91 tg~~~~vpvg~~llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQR~~Ifg~  170 (497)
T TIGR03324        91 TGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGD  170 (497)
T ss_pred             CCCCCeEECCHhhCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCCEEEeecC
Confidence            99999999999999999999999999999888778899999999999999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        201 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       201 ~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +|+|||+|+.+++.|++++| .+|||++||||+||++||++++.+.|+++      ||++|++++
T Consensus       171 ~g~GKT~Lal~~I~~q~~~d-v~~V~~~IGeR~rev~e~i~~l~~~~~l~------~tvvV~ats  228 (497)
T TIGR03324       171 RQTGKTAIAIDTILNQKGRN-VLCIYCAIGQRASAVAKVVANLREHGAMD------YTIVVVTEG  228 (497)
T ss_pred             CCCCHHHHHHHHHHHhcCCC-cEEEEEEeccCcHHHHHHHHHhhhcCCcc------eeEEEEeCC
Confidence            99999999544444454432 35999999999999999999999999998      999999875

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.

>PRK09281 F0F1 ATP synthase subunit alpha; Validated

Probab=100.00  E-value=4.4e-48  Score=379.07  Aligned_cols=211  Identities=22%  Similarity=0.401  Sum_probs=189.6

Q ss_pred             ccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEe
Q psy17544         41 HYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVAD  120 (266)
Q Consensus        41 ~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~  120 (266)
                      +|-.+  +..+.+|+|++|.|.+++++++..+ .+++.|++.  ++ +.+||+++ +++.+.+++|+++.||+.|++|.+
T Consensus        18 ~~~~~--~~~~~~G~V~~v~g~~v~v~g~~~~-~~ge~~~i~--~~-~~g~Vi~~-~~~~~~~~~~~~~~gi~~g~~V~~   90 (502)
T PRK09281         18 NFDAE--AEVEEVGTVISVGDGIARVYGLDNV-MAGELLEFP--GG-VYGIALNL-EEDNVGAVILGDYEDIKEGDTVKR   90 (502)
T ss_pred             hcCCc--ceeEEEEEEEEEeCCEEEEECcccc-ccCCEEEEC--CC-cEEEEEEE-cCCeEEEEEecCcccccCCCeeee
Confidence            55543  3355689999999999999998655 899999995  23 78999995 567999999999999999999999


Q ss_pred             cCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecC
Q psy17544        121 SGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG  200 (266)
Q Consensus       121 tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg  200 (266)
                      ++++++||+|++|||||+|++|+|||+.+++....++|++.+||+|++|.++++||+||||+||+|+|||||||++|||+
T Consensus        91 ~~~~~~v~vg~~llGrv~d~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~  170 (502)
T PRK09281         91 TGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGD  170 (502)
T ss_pred             cCCceEEecCHHhcCCEEccCCCCcCCCCCCCCCceecccCCCcCccccCCccceeecCCeeeecccccccCcEEEeecC
Confidence            99999999999999999999999999999888778899999999999999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        201 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       201 ~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +|+|||+|+.+++.|++++ +.+|||++||||+||++||+++|.+.++++      ||++|+++.
T Consensus       171 ~g~GKt~lal~~i~~~~~~-dv~~V~~~IGer~~ev~e~~~~~~~~~~l~------~tvvv~ats  228 (502)
T PRK09281        171 RQTGKTAIAIDTIINQKGK-DVICIYVAIGQKASTVAQVVRKLEEHGAME------YTIVVAATA  228 (502)
T ss_pred             CCCCchHHHHHHHHHhcCC-CeEEEEEEecCChHHHHHHHHHHhhcCCcc------ceEEEEeCC
Confidence            9999999955566556543 345799999999999999999999999998      999999875

>CHL00059 atpA ATP synthase CF1 alpha subunit

Probab=100.00  E-value=7.5e-48  Score=374.28  Aligned_cols=204  Identities=22%  Similarity=0.318  Sum_probs=185.4

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccC
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPV  129 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vpv  129 (266)
                      ....|+|++|.|.+++|+++..+ .+++.|++.  ++ ..+||+++ +++.+.+++|+++.||+.|++|.+|+++++||+
T Consensus         4 ~~~~G~V~~v~~~ii~v~Gl~~~-~~ge~~~i~--~~-~~g~vi~~-~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpv   78 (485)
T CHL00059          4 IVNTGTVLQVGDGIARIYGLDEV-MAGELVEFE--DG-TIGIALNL-ESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPV   78 (485)
T ss_pred             eeeeEEEEEEeccEEEEeccccC-CcCCEEEEC--CC-CEEEEEEE-cCCEEEEEEeeCCCCCCCCCEEEECCCcceEEc
Confidence            34579999999999999999655 899999995  22 68999995 568999999999999999999999999999999


Q ss_pred             ChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHH
Q psy17544        130 GAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI  209 (266)
Q Consensus       130 G~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~  209 (266)
                      |++|||||+|++|+|||+.+++....++|++.+||++++|.++++||+||||+||+|+|||||||++|||++|+|||+|+
T Consensus        79 g~~llGRVvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~La  158 (485)
T CHL00059         79 SEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA  158 (485)
T ss_pred             CHhhcCCEECCCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHH
Confidence            99999999999999999999887777889999999999999999999999999999999999999999999999999995


Q ss_pred             HHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        210 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       210 ~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      .+++.|+++ ++.+|||++||||+|||+||++++.+.++++      +|++|+++.
T Consensus       159 l~~I~~q~~-~dv~cV~~~IGer~rev~e~~~~l~~~~~l~------~tvvV~ata  207 (485)
T CHL00059        159 TDTILNQKG-QNVICVYVAIGQKASSVAQVVTTLQERGAME------YTIVVAETA  207 (485)
T ss_pred             HHHHHhccc-CCeEEEEEEecCCchHHHHHHHHhhcccchh------ceEEEEeCC
Confidence            555555643 3357799999999999999999999999998      999998864

>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit

Probab=100.00  E-value=8.4e-48  Score=377.00  Aligned_cols=211  Identities=26%  Similarity=0.413  Sum_probs=188.4

Q ss_pred             ccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEe
Q psy17544         41 HYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVAD  120 (266)
Q Consensus        41 ~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~  120 (266)
                      +|..+  +..+.+|+|++|.|.+++++++..+ ++++.|++.  ++ +.+||+++ +++.+.+++++++.|++.|+.|.+
T Consensus        17 ~~~~~--~~~~~~G~V~~v~g~ii~v~g~~~~-~~ge~~~i~--~~-~~g~Vi~~-~~~~~~~~~~~~~~gi~~G~~V~~   89 (501)
T TIGR00962        17 NFEKD--IEMEEVGTVVSVGDGIARVYGLENV-MSGELIEFE--GG-VQGIALNL-EEDSVGAVIMGDYSNIREGSTVKR   89 (501)
T ss_pred             hcCCc--ceeEEEEEEEEEeCCEEEEECCcCC-CCCCEEEEC--CC-eEEEEEEe-cCCeEEEEEecCCcCCCCCCeeEe
Confidence            55553  3355689999999999999998655 899999994  23 78999995 568999999999999999999999


Q ss_pred             cCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecC
Q psy17544        121 SGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG  200 (266)
Q Consensus       121 tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg  200 (266)
                      ||++++||+|++|||||+|++|+|||+.+++....++|++..||++++|.++++||.||||+||+|+|||||||++|||+
T Consensus        90 tg~~~~v~vg~~llGRV~d~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr~~I~g~  169 (501)
T TIGR00962        90 TGRILKVPVGDGLLGRVVNALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGD  169 (501)
T ss_pred             cCCccEEecChHhcCCEeCCCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCEEEeecC
Confidence            99999999999999999999999999998887777889999999999999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        201 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       201 ~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +|+|||+|+.+++.|++++| .+|||++||||+||++||++++.+.++++      ||++|++++
T Consensus       170 ~g~GKt~Lal~~i~~~~~~d-v~~V~~~IGer~rev~e~~~~~~~~~~l~------~tvvV~ats  227 (501)
T TIGR00962       170 RQTGKTAVAIDTIINQKDSD-VYCVYVAIGQKASTVAQVVRKLEEHGAMD------YTIVVAATA  227 (501)
T ss_pred             CCCCccHHHHHHHHhhcCCC-eEEEEEEccCChHHHHHHHHHHHhcCccc------eeEEEEecC
Confidence            99999999544455565432 45799999999999999999999999998      999999875

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.

>PRK13343 F0F1 ATP synthase subunit alpha; Provisional

Probab=100.00  E-value=1.4e-47  Score=374.51  Aligned_cols=212  Identities=26%  Similarity=0.422  Sum_probs=189.5

Q ss_pred             cccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544         40 KHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA  119 (266)
Q Consensus        40 ~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~  119 (266)
                      ++|..+  +..+.+|+|++|.|.++++.+...+ .+++.|++.+  + +.+||+++ +++.+.+++|+++.||+.|+.|.
T Consensus        17 ~~~~~~--~~~~~~G~V~~v~g~i~~v~gl~~~-~~ge~~~i~~--~-~~g~V~~l-~~~~v~~~~l~~~~gi~~G~~V~   89 (502)
T PRK13343         17 ARYEPQ--PDAREIGRVESVGDGIAFVSGLPDA-ALDELLRFEG--G-SRGFAFNL-EEELVGAVLLDDTADILAGTEVR   89 (502)
T ss_pred             hcCCCc--ceeEEeeEEEEEeCCEEEEeCCCCC-CCCCEEEECC--C-cEEEEEEe-cCCeEEEEEeeCCCCCCCCCEeE
Confidence            567654  3356789999999999999995444 7999999942  2 78999995 67899999999999999999999


Q ss_pred             ecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544        120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG  199 (266)
Q Consensus       120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg  199 (266)
                      +||++++||+|++|||||+|++|+|||+.+++....++|++..+|++++|.++++||.||||+||+|+|||||||++|||
T Consensus        90 ~tg~~~~vpvg~~llGRVid~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR~~I~g  169 (502)
T PRK13343         90 RTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIG  169 (502)
T ss_pred             ecCCcceeecCHHhcCCEECCCCCcccCCCCCCCCceecccCCCcChhhcCCCCcccccCCceeccccccccCCEEEeeC
Confidence            99999999999999999999999999999998888889999999999999999999999999999999999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        200 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       200 g~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ++|+|||+|+.+++.|++++| .+|||++||||+|||+||++++.+.++++      ||++|+++.
T Consensus       170 ~~g~GKt~Lal~~i~~~~~~d-v~~V~~~IGer~rev~e~~~~l~~~~~l~------~tvvV~ats  228 (502)
T PRK13343        170 DRQTGKTAIAIDAIINQKDSD-VICVYVAIGQKASAVARVIETLREHGALE------YTTVVVAEA  228 (502)
T ss_pred             CCCCCccHHHHHHHHhhcCCC-EEEEEEEeccChHHHHHHHHHHHhcCccc------eeEEEEecc
Confidence            999999999544555554332 45799999999999999999999999998      999999864

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=2.3e-46  Score=361.52  Aligned_cols=208  Identities=27%  Similarity=0.393  Sum_probs=184.9

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcc
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK  126 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~  126 (266)
                      +..+.+|+|++|.|.++++++++...++++.|++...++ .+.+||++|.+ +++.+++|+++.|++.|++|.+++++++
T Consensus        13 ~~~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~tg~~~~   91 (442)
T PRK08927         13 DTLVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRG-DRALLMPFGPLEGVRRGCRAVIANAAAA   91 (442)
T ss_pred             CcceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcC-CeEEEEEccCccCCCCCCEEEeCCCccE
Confidence            346789999999999999999852338999999965334 58999999876 5789999999999999999999999999


Q ss_pred             ccCChhhhhhhhcccCccccCCCCCCCC-CccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccH
Q psy17544        127 IPVGAETLGRIINVIGEPIDERGPIDTD-KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK  205 (266)
Q Consensus       127 VpvG~~lLGRViD~~G~PlD~~~~~~~~-~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GK  205 (266)
                      ||+|++|||||+|++|+|||+.+++... .++|++++||||++|.++++||+||||+||+|+||++|||++|||++|+||
T Consensus        92 v~vg~~llGRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GK  171 (442)
T PRK08927         92 VRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGK  171 (442)
T ss_pred             EECChhhCCCEEccCCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCH
Confidence            9999999999999999999999887664 578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        206 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       206 T~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |||+.+|+++ .+.  +++||++||||+||++||+++..+...++      |+++|++++
T Consensus       172 TtLL~~I~~~-~~~--d~~v~~~iGER~rEv~ef~~~~l~~~~l~------rsvvv~ats  222 (442)
T PRK08927        172 SVLLSMLARN-ADA--DVSVIGLIGERGREVQEFLQDDLGPEGLA------RSVVVVATS  222 (442)
T ss_pred             HHHHHHHHhc-cCC--CEEEEEEEecCcHHHHHHHHHHhhccCce------eEEEEEECC
Confidence            9999988874 344  48999999999999999997554433366      999999985

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=1.8e-46  Score=361.73  Aligned_cols=206  Identities=26%  Similarity=0.420  Sum_probs=188.4

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccc
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKI  127 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~V  127 (266)
                      +..+.+|+|++|.|.++++.++..  ++|+.|+|...++.+.+||++|. ++.+.+++|++++||+.|++|.++|++++|
T Consensus        21 ~~~~~~G~v~~v~g~~i~~~g~~~--~ige~~~i~~~~~~~~~EVv~~~-~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v   97 (444)
T PRK08972         21 FRAVASGKLVRVVGLTLEATGCRA--PVGSLCSIETMAGELEAEVVGFD-GDLLYLMPIEELRGVLPGARVTPLGEQSGL   97 (444)
T ss_pred             CCcceeeEEEEEEcCEEEEeeCCC--CCCCEEEEecCCCcEEEEEEEec-CCEEEEEECCCcCCCCCCCEEEECCCccEE
Confidence            336778999999999999999863  89999999532445899999976 568999999999999999999999999999


Q ss_pred             cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544        128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV  207 (266)
Q Consensus       128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~  207 (266)
                      |+|++|||||+|++|+|||+.+++...+++|++.+||||++|.++++||.||+++||.++|+++|||++|||++|+||||
T Consensus        98 ~vg~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~sG~GKST  177 (444)
T PRK08972         98 PVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSV  177 (444)
T ss_pred             EcChhhcCCeECCCCCCcCCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEECCCCCChhH
Confidence            99999999999999999999998877778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        208 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       208 L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |+.+++++ ...  +++||++||||+|||+||++++.+.+.++      |+++|++++
T Consensus       178 LL~~I~~~-~~~--dv~Vi~lIGER~rEv~efi~~~l~~~~l~------rtvvv~ats  226 (444)
T PRK08972        178 LLGMMTRG-TTA--DVIVVGLVGERGREVKEFIEEILGEEGRA------RSVVVAAPA  226 (444)
T ss_pred             HHHHhccC-CCC--CEEEEEEEcCChHHHHHHHHHhhccCCcc------cEEEEEECC
Confidence            99988874 333  49999999999999999999988877777      999999875

>PRK07165 F0F1 ATP synthase subunit alpha; Validated

Probab=100.00  E-value=1.5e-46  Score=366.43  Aligned_cols=201  Identities=18%  Similarity=0.272  Sum_probs=180.5

Q ss_pred             cEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChhh
Q psy17544         54 GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAET  133 (266)
Q Consensus        54 GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~l  133 (266)
                      -+|++|.|.++++.|+..+ .+++.|++.++ +...+||+++ +++.+.+++|+++.|++.|++|.+||++++||||++|
T Consensus         3 ~~V~~v~~~i~~v~Gl~~~-~~ge~~~~~~~-~~~~g~V~~~-~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~l   79 (507)
T PRK07165          3 PKIKSIFDYIVEVKGEYDY-QQNQFFTLKNN-PNVKAFVISA-TEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEY   79 (507)
T ss_pred             CEEEEEeceEEEEEcccCC-CcCCEEEECCC-CeEEEEEEEE-eCCeEEEEEccCccCCCCCCEEEECCCccEEECCccc
Confidence            4899999999999999655 89999999543 3478999996 5678999999999999999999999999999999999


Q ss_pred             hhhhhcccCccccCCCCCCC-----CCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHH
Q psy17544        134 LGRIINVIGEPIDERGPIDT-----DKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL  208 (266)
Q Consensus       134 LGRViD~~G~PlD~~~~~~~-----~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L  208 (266)
                      ||||+|++|+|||+.+++..     +..+|++.+||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus        80 LGRVvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~l  159 (507)
T PRK07165         80 FGKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHI  159 (507)
T ss_pred             cCCEECCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHH
Confidence            99999999999999987655     4567999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeec
Q psy17544        209 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNS  264 (266)
Q Consensus       209 ~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q  264 (266)
                      +.+++.|+++ ++.+|||++||||+||+++|+++|.+.|+|+      +|++|..+
T Consensus       160 al~~I~~q~~-~dv~~V~~~IGer~~ev~~~~~~l~~~gal~------~tvvV~at  208 (507)
T PRK07165        160 ALNTIINQKN-TNVKCIYVAIGQKRENLSRIYETLKEHDALK------NTIIIDAP  208 (507)
T ss_pred             HHHHHHHhcC-CCeEEEEEEccCChHHHHHHHHHhhhcCcee------eeEEEEeC
Confidence            5444455643 3356899999999999999999999999998      99988754

>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit

Probab=100.00  E-value=5.4e-46  Score=359.23  Aligned_cols=203  Identities=22%  Similarity=0.307  Sum_probs=182.2

Q ss_pred             ccEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCC-CCEEEecCCCccccCC
Q psy17544         53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVR-GQVVADSGNPIKIPVG  130 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~-G~~V~~tg~~~~VpvG  130 (266)
                      |++|++|.|.++++++++.+ ++|+.|++...++ ...+||+++. ++.+.+++|++++||+. |++|.+++++++||+|
T Consensus         2 y~~v~~i~G~~i~~~g~~~~-~~Ge~~~i~~~~~~~~~geVi~~~-~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~vg   79 (466)
T TIGR01040         2 YRTVSGVNGPLVILDNVKFP-RFAEIVNLTLPDGTVRSGQVLEVS-GNKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVS   79 (466)
T ss_pred             CccceEEEccEEEEECCCCC-CcCCEEEEEeCCCCEEEEEEEEEe-CCeEEEEEcCCCCCcccCCCEEEECCCccEEEcC
Confidence            67899999999999998544 8999999952233 3789999975 57888999999999996 9999999999999999


Q ss_pred             hhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHH
Q psy17544        131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM  210 (266)
Q Consensus       131 ~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~  210 (266)
                      ++|||||+|++|+|||+.+++....++|++++||||++|.++++||+||||+||+|+|||+|||+||||++|+|||+|+.
T Consensus        80 ~~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~L~~  159 (466)
T TIGR01040        80 EDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAA  159 (466)
T ss_pred             cccccCEECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHHHHH
Confidence            99999999999999999988777777899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh------cC-------CcEEEEEeecCCchHHHHH-HHHhHhcCccccCCCCCceEEEeecc
Q psy17544        211 ELINNVAK------AH-------GGYSVFAGVGERTREGNDL-YHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       211 ~ii~~~a~------~~-------~~v~V~alIGER~rEv~ef-~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ||+++ ++      +|       +.++||++|||| ||+.|| +++|.+.|+++      |+++|++++
T Consensus       160 ~i~~~-~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~l~~~g~l~------rtvvv~ats  220 (466)
T TIGR01040       160 QICRQ-AGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQDFEENGSME------RVCLFLNLA  220 (466)
T ss_pred             HHHHh-hccccccccccccccCCceEEEEEEeeee-hHHHHHHHHHHHhcCCcc------eEEEEEECC
Confidence            99886 33      22       238999999999 888886 56799999998      999999986

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>PRK06936 type III secretion system ATPase; Provisional

Probab=100.00  E-value=1.3e-45  Score=356.09  Aligned_cols=204  Identities=24%  Similarity=0.360  Sum_probs=183.6

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecC-CC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccc
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGR-SP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKI  127 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~-~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~V  127 (266)
                      .+.+|+|++|.|.++++.++..  .+++.|++... .. .+.+||+++.+ +.+.+++|++++||+.|++|.+||++++|
T Consensus        21 ~~~~G~V~~v~g~~v~~~~~~~--~~ge~~~i~~~~~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~tg~~~~v   97 (439)
T PRK06936         21 IQIRGRVTQVTGTILKAVVPGV--RIGELCYLRNPDNSLSLQAEVIGFAQ-HQALLTPLGEMYGISSNTEVSPTGTMHQV   97 (439)
T ss_pred             cceeeEEEEEECcEEEEEeCCC--CCCCEEEEecCCCCcceEEEEEEEEC-CeEEEEecCCCCCCCCCCEEEeCCCceEE
Confidence            6678999999999999998764  79999999642 23 58999999876 57779999999999999999999999999


Q ss_pred             cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544        128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV  207 (266)
Q Consensus       128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~  207 (266)
                      |+|++|||||+|++|+|||+.+++...+++|++++||||++|.++++||+||+++||.++|+++|||++|||++|+||||
T Consensus        98 ~vg~~lLGRV~d~~G~plD~~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKSt  177 (439)
T PRK06936         98 GVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKST  177 (439)
T ss_pred             EeCccccCCEECCCCCccCCCCCCCccceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCChHH
Confidence            99999999999999999999988877778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        208 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       208 L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |+.+|+++ ++.  +++||++||||+||++||+++..+...++      |+++|++++
T Consensus       178 Ll~~Ia~~-~~~--dv~V~~liGERgrEv~ef~~~~l~~~~l~------rtvvv~ats  226 (439)
T PRK06936        178 LLASLIRS-AEV--DVTVLALIGERGREVREFIESDLGEEGLR------KAVLVVATS  226 (439)
T ss_pred             HHHHHhcC-CCC--CEEEEEEEccCcHHHHHHHHHHhcccccc------eeEEEEECC
Confidence            99999885 344  49999999999999999997744433365      999999875

>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit

Probab=100.00  E-value=1.1e-45  Score=363.68  Aligned_cols=205  Identities=24%  Similarity=0.380  Sum_probs=179.4

Q ss_pred             ccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544         53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE  132 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~  132 (266)
                      +|+|++|.|++|+++++..+ .+++.|+|.  +..+.+||+++ +++.+.+++|+++.||++|++|..||++++|++||+
T Consensus         2 ~G~V~~v~G~vV~a~g~~~~-~~gE~v~v~--~~~l~gEVI~l-~~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lGpg   77 (591)
T TIGR01042         2 YGYIYKVSGPVVVAENMAGA-AMYELVRVG--HDELVGEIIRL-EGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPG   77 (591)
T ss_pred             ceEEEEEECCEEEEecCCCC-CcCCEEEEC--CCceEEEEEEE-cCCeEEEEEccCccCCCCCCEEEeCCCccEEEcCHH
Confidence            69999999999999998655 899999994  44589999996 557899999999999999999999999999999999


Q ss_pred             hhhhhhcccCccccCCC----C-----------CCCC-------------------------------------------
Q psy17544        133 TLGRIINVIGEPIDERG----P-----------IDTD-------------------------------------------  154 (266)
Q Consensus       133 lLGRViD~~G~PlD~~~----~-----------~~~~-------------------------------------------  154 (266)
                      |||||+|++|||||+.+    +           ++.+                                           
T Consensus        78 lLG~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g  157 (591)
T TIGR01042        78 ILGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARG  157 (591)
T ss_pred             HhhcccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCce
Confidence            99999999999999753    2           2111                                           


Q ss_pred             --------------------------------CccccccCcccccccccccccccccceEeecccccccCceeeeecCCC
Q psy17544        155 --------------------------------KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG  202 (266)
Q Consensus       155 --------------------------------~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G  202 (266)
                                                      +.||+.. ||++++|.++++||.||+|+||+|+||+||||++||||+|
T Consensus       158 ~v~~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~G  236 (591)
T TIGR01042       158 TITYIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFG  236 (591)
T ss_pred             EEEEEccCCCceeeeEEEEEeeCCceeeeccceeeeccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCCC
Confidence                                            1578887 8999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCc-ccc--CCCCCceEEEeecc
Q psy17544        203 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGV-ISL--KDKSSKVNFLFNSR  265 (266)
Q Consensus       203 ~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gv-l~~--~~~~~~~~~v~~q~  265 (266)
                      +|||+|+++|++ ++++|  ++||++||||+||++||+++|++... ...  ++.++||++|++..
T Consensus       237 ~GKT~l~~~lak-~s~aD--viVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~ts  299 (591)
T TIGR01042       237 CGKTVISQSLSK-YSNSD--AIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTS  299 (591)
T ss_pred             cCHHHHHHHHHh-ccCcC--EEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcC
Confidence            999999999987 45665  99999999999999999999987642 111  35577999999864

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit

Probab=100.00  E-value=2.4e-45  Score=362.29  Aligned_cols=205  Identities=25%  Similarity=0.367  Sum_probs=177.5

Q ss_pred             ccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544         53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE  132 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~  132 (266)
                      .|+|++|.|++++++++... .+++.|+|.  +..+.+||+++. ++.+.+++|++|.||++|++|..||++++|++|++
T Consensus         1 ~G~I~~V~Gpvv~a~g~~~~-~~gE~v~v~--~~~l~gEVi~~~-~d~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpg   76 (578)
T TIGR01043         1 KGRIIRVSGPLVVADGMKGA-QMYEVVKVG--EEGLIGEIIRIE-GDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPG   76 (578)
T ss_pred             CCEEEEEECCEEEEecCCCC-CcCCEEEEC--CCcEEEEEEEEc-CCeEEEEECCCCCCCCCCCEEEECCCccEEEcCHH
Confidence            49999999999999998744 899999994  345899999975 57888999999999999999999999999999999


Q ss_pred             hhhhhhcccCccccCCCC--------------CCCC--------------------------------------------
Q psy17544        133 TLGRIINVIGEPIDERGP--------------IDTD--------------------------------------------  154 (266)
Q Consensus       133 lLGRViD~~G~PlD~~~~--------------~~~~--------------------------------------------  154 (266)
                      |||||+|++|||||+.++              ++.+                                            
T Consensus        77 lLGrV~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v  156 (578)
T TIGR01043        77 LLGSIYDGVQRPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEI  156 (578)
T ss_pred             HhcceeccCCccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCCCCcceE
Confidence            999999999999997631              1111                                            


Q ss_pred             -----------------------------CccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccH
Q psy17544        155 -----------------------------KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK  205 (266)
Q Consensus       155 -----------------------------~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GK  205 (266)
                                                   +.||+.. |+++++|.++++||.||+|+||+|+||+||||++|||++|+||
T Consensus       157 ~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~-p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GK  235 (578)
T TIGR01043       157 VEIAEEGDYTVEDTIAVVDTDGDEEIKMYQKWPVRI-PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGK  235 (578)
T ss_pred             EEeccCCCceeeeeEEEEecCCceeeeeeeeccccc-CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCH
Confidence                                         1568877 8889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcc-ccCCCCCceEEEeecc
Q psy17544        206 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI-SLKDKSSKVNFLFNSR  265 (266)
Q Consensus       206 T~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl-~~~~~~~~~~~v~~q~  265 (266)
                      |+|+++++++ +++  +++||++||||+||++||+++|++..=- ..++.++||+||+++.
T Consensus       236 T~l~~~lak~-~~a--divVyvg~GERG~E~~e~le~f~~l~dp~~g~~~m~RTvlVanTS  293 (578)
T TIGR01043       236 TVTQHQLAKW-SDA--DIVVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTS  293 (578)
T ss_pred             HHHHHHHHhc-CCC--CEEEEEEeccChHHHHHHHHHhHhhcccccccccccceEEEEECC
Confidence            9999999985 445  4999999999999999999999873211 1134566999999864

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>PTZ00185 ATPase alpha subunit; Provisional

Probab=100.00  E-value=6e-45  Score=354.87  Aligned_cols=207  Identities=21%  Similarity=0.320  Sum_probs=179.4

Q ss_pred             ccccEEEEEECcEEEE---EecCCCcccccEEEEecCC-CceEEEEeeeeCCc-eeEEEeccCCCCCCCCCEEEecCCCc
Q psy17544         51 KGNGRVVAVIGAVVDV---QFDHDLPPILNALEVEGRS-PRLVLEVAQHLGEN-TVRTIAMDGTEGLVRGQVVADSGNPI  125 (266)
Q Consensus        51 ~~~GrV~~I~G~vV~v---~~~~~~p~ig~~~~v~~~~-~~l~~EVv~~l~~~-~v~l~~~~~t~Gl~~G~~V~~tg~~~  125 (266)
                      ...|+|++|.|.+++|   ++.+++ ..+|.+++...+ +...+.|... +++ ++.+++|++++||+.|++|.+||+++
T Consensus        38 ~~~G~V~~v~~gia~v~~v~Gl~~~-~~gElv~f~~~~~~~~~G~vlnl-~~d~~v~~v~lg~~~gI~~G~~V~~tg~~~  115 (574)
T PTZ00185         38 EMIGYVHSIDGTIATLIPAPGNPGV-AYNTIIMIQVSPTTFAAGLVFNL-EKDGRIGIILMDNITEVQSGQKVMATGKLL  115 (574)
T ss_pred             eeeEEEEEEcCeEEEEeecCCCccc-ccCceEEEEcCCCCeEEEEEEEe-cCCCeEEEEEecCccCCCCCCEEEECCCcc
Confidence            3579999998879997   566554 678888885333 2347888875 556 79999999999999999999999999


Q ss_pred             cccCChhhhhhhhcccCccccCC------CCCCCC-CccccccCcccccccccccccccccceEeecccccccCceeeee
Q psy17544        126 KIPVGAETLGRIINVIGEPIDER------GPIDTD-KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLF  198 (266)
Q Consensus       126 ~VpvG~~lLGRViD~~G~PlD~~------~~~~~~-~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIf  198 (266)
                      +||||++|||||+|++|+|||+.      +++... .++|++.+||+|++|.++++||+||||+||+|+|||||||++||
T Consensus       116 ~VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR~lIf  195 (574)
T PTZ00185        116 YIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIV  195 (574)
T ss_pred             EEECCcccccCEECCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCEEEee
Confidence            99999999999999999999987      445544 46799999999999999999999999999999999999999999


Q ss_pred             cCCCccHHHHHHHHHHHHHh-------cCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        199 GGAGVGKTVLIMELINNVAK-------AHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       199 gg~G~GKT~L~~~ii~~~a~-------~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |++|+|||+|+.+++.||+.       .++++|||++||||+||++|++++|.+.|+|+      +|++|++++
T Consensus       196 Gd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~------~TvVV~AtA  263 (574)
T PTZ00185        196 GDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALR------YTTVMAATA  263 (574)
T ss_pred             cCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCcc------ceEEEEECC
Confidence            99999999996555445541       24469999999999999999999999999998      999999875

>PRK04192 V-type ATP synthase subunit A; Provisional

Probab=100.00  E-value=4.3e-45  Score=360.91  Aligned_cols=206  Identities=26%  Similarity=0.369  Sum_probs=179.8

Q ss_pred             cccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCCh
Q psy17544         52 GNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGA  131 (266)
Q Consensus        52 ~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~  131 (266)
                      ..|+|++|.|++|++++.... .+++.|++.  +..+.+||+++.+ +.+.+++|++|.||++|++|++||++++|++||
T Consensus         3 ~~G~I~~V~Gpvv~~~~~~~~-~~~E~v~v~--~~~l~gEVi~~~~-d~a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGp   78 (586)
T PRK04192          3 TKGKIVRVSGPLVVAEGMGGA-RMYEVVRVG--EEGLIGEIIRIEG-DKATIQVYEETSGIKPGEPVEFTGEPLSVELGP   78 (586)
T ss_pred             ceeEEEEEECcEEEEEeCCCC-CccCEEEEC--CCcEEEEEEEEeC-CceEEEEecCCcCCCCCCEEEeCCCccEEEcCH
Confidence            479999999999999998754 899999994  3568999999765 677899999999999999999999999999999


Q ss_pred             hhhhhhhcccCccccCCCC--------------CCC--------------------------------------------
Q psy17544        132 ETLGRIINVIGEPIDERGP--------------IDT--------------------------------------------  153 (266)
Q Consensus       132 ~lLGRViD~~G~PlD~~~~--------------~~~--------------------------------------------  153 (266)
                      +|||||+|++|||||+.++              ++.                                            
T Consensus        79 glLGrv~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~  158 (586)
T PRK04192         79 GLLGSIFDGIQRPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGT  158 (586)
T ss_pred             HhcCCeecCCCCcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCceE
Confidence            9999999999999997641              111                                            


Q ss_pred             -------------------------------CCccccccCcccccccccccccccccceEeecccccccCceeeeecCCC
Q psy17544        154 -------------------------------DKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG  202 (266)
Q Consensus       154 -------------------------------~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G  202 (266)
                                                     .++||++.++|+ .+|.++++||.||+|+||+|+||+||||++|||++|
T Consensus       159 ~~~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G  237 (586)
T PRK04192        159 VKEIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFG  237 (586)
T ss_pred             EEEEccCCCceeeeEEEEEEccCCceeeeccccccccccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCCC
Confidence                                           134799998888 999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcc-ccCCCCCceEEEeecc
Q psy17544        203 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI-SLKDKSSKVNFLFNSR  265 (266)
Q Consensus       203 ~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl-~~~~~~~~~~~v~~q~  265 (266)
                      +|||+|+++|+++ +++  +++||++||||+||++||+++|+++--- ..++.++||+||+++.
T Consensus       238 ~GKTvl~~~iak~-a~a--divVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTS  298 (586)
T PRK04192        238 SGKTVTQHQLAKW-ADA--DIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTS  298 (586)
T ss_pred             CCHHHHHHHHHhc-CCC--CEEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECC
Confidence            9999999999985 555  4999999999999999999999975210 1244566999999875

>PRK05922 type III secretion system ATPase; Validated

Probab=100.00  E-value=8.2e-43  Score=336.41  Aligned_cols=205  Identities=22%  Similarity=0.326  Sum_probs=186.2

Q ss_pred             CCccccEEEEEECcEEEEEecCCCcccccEEEEecC-CCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccc
Q psy17544         49 KGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGR-SPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKI  127 (266)
Q Consensus        49 ~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~-~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~V  127 (266)
                      ..+.+|+|++|.|.+++++++..  ++++.|++... +..+.+||+++. ++++.+++|+++.|++.|++|.++++++++
T Consensus        16 ~~~~~g~v~~v~g~~i~~~g~~~--~~ge~~~i~~~~~~~~~~eVv~~~-~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v   92 (434)
T PRK05922         16 PYRECGLLSRVSGNLLEAQGLSA--CLGELCQISLSKSPPILAEVIGFH-NRTTLLMSLSPIHYVALGAEVLPLRRPPSL   92 (434)
T ss_pred             cceeeeEEEEEEccEEEEEeCCC--CCCCEEEEecCCCCeeEEEEEEEe-CCeEEEEEccCCCCCCCCCEEEeCCCCcEE
Confidence            35678999999999999999874  69999999532 335889999975 578999999999999999999999999999


Q ss_pred             cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544        128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV  207 (266)
Q Consensus       128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~  207 (266)
                      |+|++|||||+|++|+|||+.+++....++|++.+||+|++|.++++||+||||+||+|+|+++|||++|||++|+||||
T Consensus        93 ~vg~~llGrv~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKST  172 (434)
T PRK05922         93 HLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSS  172 (434)
T ss_pred             EcChhhcCCEeCCCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChHH
Confidence            99999999999999999999988777777899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        208 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       208 L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |+.+|+++ .+.  +.++|++||||++|+.+|++++.+...++      ++++|++++
T Consensus       173 LL~~Ia~~-~~~--d~gvi~liGerg~ev~eyl~q~~~~~~~~------rTVlv~ats  221 (434)
T PRK05922        173 LLSTIAKG-SKS--TINVIALIGERGREVREYIEQHKEGLAAQ------RTIIIASPA  221 (434)
T ss_pred             HHHHHhcc-CCC--CceEEEEeCCCCchHHHHHHHHHhhcccc------ceEEEEECC
Confidence            99988874 333  48999999999999999999998877766      999999875

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=6.7e-43  Score=338.21  Aligned_cols=206  Identities=20%  Similarity=0.354  Sum_probs=188.7

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCC----ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCC
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP----RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGN  123 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~----~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~  123 (266)
                      +..+.+|+|++|.|.++++.++..  ++|+.|+|...++    .+.+||+++ +++.+.+++|+++.||+.|+.|+++++
T Consensus        23 ~~~~~~g~v~~v~g~~~~~~g~~~--~~ge~c~i~~~~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~V~~tg~   99 (451)
T PRK05688         23 AQPVVEGRLLRMVGLTLEAEGLRA--AVGSRCLVINDDSYHPVQVEAEVMGF-SGDKVFLMPVGSVAGIAPGARVVPLAD   99 (451)
T ss_pred             CccceeeEEEEEEecEEEEecCCC--CCCCEEEEecCCCccccceEEEEEEE-cCCEEEEEEccCccCCCCCCEEEECCC
Confidence            446788999999999999999864  8999999953223    489999996 668999999999999999999999999


Q ss_pred             CccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544        124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV  203 (266)
Q Consensus       124 ~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~  203 (266)
                      +++||+|++|||||+|++|+|||+.+++...+++|++++||||++|.++++||+|||++||.|+|+++|||++|||++|+
T Consensus       100 ~~~v~vg~~llGRV~d~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~  179 (451)
T PRK05688        100 TGRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGV  179 (451)
T ss_pred             ccEEEecccccCCEEeccCceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECCCCC
Confidence            99999999999999999999999998887777889999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        204 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       204 GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |||||+.++++. .  +.+++|+++||||++|+++|++++.+.+.++      ++++|++++
T Consensus       180 GKSTLl~~I~g~-~--~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~------rsvvv~ats  232 (451)
T PRK05688        180 GKSVLLGMMTRF-T--EADIIVVGLIGERGREVKEFIEHILGEEGLK------RSVVVASPA  232 (451)
T ss_pred             CHHHHHHHHhCC-C--CCCEEEEEEeCcCcHhHHHHHHHHhhcCCcc------EEEEEEECC
Confidence            999999888763 3  3358899999999999999999999999988      999999875

>PRK09099 type III secretion system ATPase; Provisional

Probab=100.00  E-value=1e-42  Score=336.65  Aligned_cols=206  Identities=29%  Similarity=0.476  Sum_probs=187.5

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCc--eEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCc
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPR--LVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPI  125 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~--l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~  125 (266)
                      +..+.+|+|++|.|.+++++++. + ++|+.|++...++.  +.+||+++. ++.+.+++|+++.||+.|++|.++++++
T Consensus        20 ~~~~~~G~V~~v~g~~i~~~g~~-~-~~ge~~~i~~~~g~~~~~~eVv~~~-~~~~~l~~~~~t~gi~~g~~V~~tg~~~   96 (441)
T PRK09099         20 PAVRRTGKVVEVIGTLLRVSGLD-V-TLGELCELRQRDGTLLQRAEVVGFS-RDVALLSPFGELGGLSRGTRVIGLGRPL   96 (441)
T ss_pred             CcceEeeEEEEEECCEEEEeccC-C-CCCCEEEEecCCCCeeeEEEEEEEE-CCEEEEEEccCCcCCCCCCEEEeCCCcc
Confidence            34677899999999999999986 3 89999999532232  789999975 5789999999999999999999999999


Q ss_pred             cccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccH
Q psy17544        126 KIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK  205 (266)
Q Consensus       126 ~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GK  205 (266)
                      +||+|++|||||+|++|+|||+.+++...+++|++..||||++|.++++||+||+++||.++|+++|||++|||++|+||
T Consensus        97 ~v~vg~~lLGrV~d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GK  176 (441)
T PRK09099         97 SVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGK  176 (441)
T ss_pred             EEEeccccccCEEcccCCccCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCH
Confidence            99999999999999999999999888777788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        206 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       206 T~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |+|+.+++++ .+.  +.+||++||||+||++||++++.+.+.++      |+++|++++
T Consensus       177 TtLl~~ia~~-~~~--d~~vi~~iGer~~ev~ef~~~~~~~~~l~------rtvvv~~ts  227 (441)
T PRK09099        177 STLMGMFARG-TQC--DVNVIALIGERGREVREFIELILGEDGMA------RSVVVCATS  227 (441)
T ss_pred             HHHHHHHhCC-CCC--CeEEEEEEccChHHHHHHHHHHhhcCCcc------eEEEEEECC
Confidence            9999988875 334  38999999999999999999999888877      999999875

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=8.7e-43  Score=337.01  Aligned_cols=206  Identities=23%  Similarity=0.377  Sum_probs=186.2

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCC----ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEec--
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP----RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADS--  121 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~----~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~t--  121 (266)
                      +..+.+|||++|.|.++++.++..  ++|+.|.+...++    .+.+||++|. ++.+.+++|++++|++.|++|.++  
T Consensus        23 ~~~~~~G~v~~v~g~~v~~~g~~~--~iG~~c~i~~~~~~~~~~~~~eVvg~~-~~~~~l~~~~~~~gi~~g~~v~~~~~   99 (455)
T PRK07960         23 PAVRRYGRLTRATGLVLEATGLQL--PLGATCVIERQNGSETHEVESEVVGFN-GQRLFLMPLEEVEGILPGARVYARNI   99 (455)
T ss_pred             CccccccEEEEEEEEEEEEeCCCC--CCCCEEEEEeCCCccccceeeeEEEec-CCEEEEEECCCccCCCCCCEEEECCc
Confidence            446779999999999999999864  7999999843223    4789999975 578889999999999999999999  


Q ss_pred             -----CCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceee
Q psy17544        122 -----GNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIG  196 (266)
Q Consensus       122 -----g~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~g  196 (266)
                           ++++++|+|++|||||+|++|+|||+++++....++|++++||||++|.++++||+||||+||+|+|+++|||++
T Consensus       100 ~~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqri~  179 (455)
T PRK07960        100 SGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMG  179 (455)
T ss_pred             ccccCCCceEEECCcccccCEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCCcEEE
Confidence                 999999999999999999999999999887777778999999999999999999999999999999999999999


Q ss_pred             eecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        197 LFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       197 Ifgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |||++|+|||||+.+++++ .+.  +++|+++||||++|+++|++++.+.+.++      ++++|++++
T Consensus       180 I~G~sG~GKTTLL~~Ia~~-~~~--d~iv~g~Igerg~ev~e~~~~~~~~~~~~------~tvVv~~~a  239 (455)
T PRK07960        180 LFAGSGVGKSVLLGMMARY-TQA--DVIVVGLIGERGREVKDFIENILGAEGRA------RSVVIAAPA  239 (455)
T ss_pred             EECCCCCCccHHHHHHhCC-CCC--CEEEEEEEEECCeEHHHHHHhhcCcCCCc------eEEEEEECC
Confidence            9999999999999888764 333  48999999999999999999998888877      999998864

>PRK06820 type III secretion system ATPase; Validated

Probab=100.00  E-value=2.9e-42  Score=333.32  Aligned_cols=210  Identities=23%  Similarity=0.357  Sum_probs=187.5

Q ss_pred             cccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544         40 KHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA  119 (266)
Q Consensus        40 ~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~  119 (266)
                      ++|.++.. ..+.+|+|++|.|.++++.++..  .+|+.|++.. + .+.+||+++.+ +.+.+++|++++||+.|++|+
T Consensus        18 ~~~~~~~~-~~~~~G~v~~v~g~~~~~~~~~~--~~ge~~~i~~-~-~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~v~   91 (440)
T PRK06820         18 TRPSAPPE-GLRYRGPIVEIGPTLLRASLPGV--AQGELCRIEP-Q-GMLAEVVSIEQ-EMALLSPFASSDGLRCGQWVT   91 (440)
T ss_pred             HhcCCCCC-ceeEeeEEEEEECcEEEEEECCC--CcCCEEEEec-C-CeEEEEEEEeC-CeEEEEEccCccCCCCCCEEE
Confidence            46665422 36778999999999999998754  7999999953 2 37899999765 679999999999999999999


Q ss_pred             ecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544        120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG  199 (266)
Q Consensus       120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg  199 (266)
                      ++|+++++|+|++|||||+|++|+|||+.+++ ..+++|+++.||||++|.+++++|.||+++||.|+|+++|||++|||
T Consensus        92 ~tg~~~~v~vg~~llGrv~d~~G~pld~~~~~-~~~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G  170 (440)
T PRK06820         92 PLGHMHQVQVGADLAGRILDGLGAPIDGGPPL-TGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFA  170 (440)
T ss_pred             ECCCCcEEEechhhcCCEECccCCccCCCCCC-CcccccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEEC
Confidence            99999999999999999999999999998766 45678999999999999999999999999999999999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        200 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       200 g~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ++|+|||+|+.+|+++ .  +.+++||++||||+||+++|++++...+.++      +++++++++
T Consensus       171 ~sG~GKStLl~~I~~~-~--~~dv~V~~~iGergrEv~ef~e~~l~~~~~~------rtvvv~ats  227 (440)
T PRK06820        171 AAGVGKSTLLGMLCAD-S--AADVMVLALIGERGREVREFLEQVLTPEARA------RTVVVVATS  227 (440)
T ss_pred             CCCCChHHHHHHHhcc-C--CCCEEEEEEEccChHHHHHHHHHhhccCCce------eEEEEEeCC
Confidence            9999999999877763 3  3459999999999999999999999988877      999999875

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=100.00  E-value=2.7e-42  Score=331.88  Aligned_cols=200  Identities=29%  Similarity=0.472  Sum_probs=180.5

Q ss_pred             cEEEEEECcEEEEEecCCCcccccEEEEec-CCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544         54 GRVVAVIGAVVDVQFDHDLPPILNALEVEG-RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE  132 (266)
Q Consensus        54 GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~-~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~  132 (266)
                      |+|++|.|.+++|+++..  .+++.|++.. .+..+.+||+++. ++.+.+++|+++.||++|++|.++|+++++|+|++
T Consensus         1 G~V~~i~G~~i~v~~~~~--~ige~~~i~~~~~~~~~~eVi~~~-~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~~   77 (413)
T TIGR03497         1 GKVTRVIGLTIESKGPKA--KIGELCSILTKGGKPVLAEVVGFK-EENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKG   77 (413)
T ss_pred             CeEEEEECCEEEEEeCCC--CcCCEEEEEeCCCCeEEEEEEEEc-CCeEEEEEccCccCCCCCCEEEEcCCeeEEEcchh
Confidence            899999999999999853  7999999963 2345899999987 57899999999999999999999999999999999


Q ss_pred             hhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHHHH
Q psy17544        133 TLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL  212 (266)
Q Consensus       133 lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~i  212 (266)
                      |||||+|++|+|||+.+++...+++|++++||+|++|.+++++|.||+++||.++|+++|||++|||++|+|||+|+.+|
T Consensus        78 lLGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i  157 (413)
T TIGR03497        78 LLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMI  157 (413)
T ss_pred             hcCCEEcCCCCcccCCCCCCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            99999999999999998877777899999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        213 INNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       213 i~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +++ .+  .+..||+++|||+||++||+++..+...++      |+++|++++
T Consensus       158 ~~~-~~--~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~------~~v~v~~ts  201 (413)
T TIGR03497       158 ARN-AK--ADINVIALIGERGREVRDFIEKDLGEEGLK------RSVVVVATS  201 (413)
T ss_pred             hCC-CC--CCeEEEEEEccchHHHHHHHHHHhcccccc------eEEEEEECC
Confidence            764 33  358899999999999999998854433355      999999986

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=100.00  E-value=3.9e-42  Score=330.63  Aligned_cols=200  Identities=26%  Similarity=0.470  Sum_probs=184.4

Q ss_pred             cEEEEEECcEEEEEecCCCcccccEEEEec-CCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544         54 GRVVAVIGAVVDVQFDHDLPPILNALEVEG-RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE  132 (266)
Q Consensus        54 GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~-~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~  132 (266)
                      |+|++|.|.+++++++.  +.+++.|++.. .+..+.+||+++ .++.+.+++|++++||++|+.|.++|+++++|+|++
T Consensus         1 G~v~~v~g~~v~v~g~~--~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~   77 (411)
T TIGR03496         1 GRVTRVVGLVLEAVGLR--APVGSRCEIESSDGDPIEAEVVGF-RGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDS   77 (411)
T ss_pred             CEEEEEECcEEEEEeCC--CCcCCEEEEEcCCCCeEEEEEEEe-cCCEEEEEEccCccCCCCCCEEEECCCccEEEcchh
Confidence            89999999999999983  38999999953 222578999997 568999999999999999999999999999999999


Q ss_pred             hhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHHHH
Q psy17544        133 TLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL  212 (266)
Q Consensus       133 lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~i  212 (266)
                      |||||+|++|+|||+.+++...++||++++||||++|.++++++.||+++||.++|+++|||++|||++|+|||+|+.+|
T Consensus        78 llGrVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I  157 (411)
T TIGR03496        78 LLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMM  157 (411)
T ss_pred             hcCCEECCCCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHHH
Confidence            99999999999999998877778899999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        213 INNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       213 i~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +++ .+.  ++.||++||||+||++||++++.+.++++      |+++|++++
T Consensus       158 ~~~-~~~--~~~vi~~iGer~~ev~e~~~~~~~~~~~~------~tvvv~~ts  201 (411)
T TIGR03496       158 ARY-TEA--DVVVVGLIGERGREVKEFIEDILGEEGLA------RSVVVAATA  201 (411)
T ss_pred             hcC-CCC--CEEEEEEEecChHHHHHHHHHHhhCCCcc------eEEEEEECC
Confidence            764 343  48899999999999999999999999988      999999986

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=100.00  E-value=5.2e-42  Score=330.14  Aligned_cols=202  Identities=28%  Similarity=0.469  Sum_probs=181.8

Q ss_pred             cEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544         54 GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE  132 (266)
Q Consensus        54 GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~  132 (266)
                      |+|++|.|.+++++++...+++++.|++...++ .+.+||+++ +++.+.++++++++||+.|++|++|+++++||+|++
T Consensus         1 G~v~~v~g~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~vg~~   79 (418)
T TIGR03498         1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGF-NGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPS   79 (418)
T ss_pred             CEEEEEECcEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEE-cCCeEEEEEccCCcCCCCCCEEEECCCccEEEeChh
Confidence            899999999999999976558999999964333 578999996 567999999999999999999999999999999999


Q ss_pred             hhhhhhcccCccccCCCCCCCC-CccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHHH
Q psy17544        133 TLGRIINVIGEPIDERGPIDTD-KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME  211 (266)
Q Consensus       133 lLGRViD~~G~PlD~~~~~~~~-~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~  211 (266)
                      |||||+|++|+|||+.+++... .++|++.+||+|++|.++++||.||+++||.++|+++|||++|||++|+|||+|+.+
T Consensus        80 lLGRViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtLl~~  159 (418)
T TIGR03498        80 WLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSM  159 (418)
T ss_pred             hcCCEECCCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChHHHHHH
Confidence            9999999999999999887555 468999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        212 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       212 ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |+++ .+.  +..+|+++|||+||++||++++.+.+.++      |+++|++++
T Consensus       160 I~~~-~~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~------~tvvv~ats  204 (418)
T TIGR03498       160 LARN-TDA--DVVVIALVGERGREVREFLEDDLGEEGLK------RSVVVVATS  204 (418)
T ss_pred             HhCC-CCC--CEEEEEEEeeechHHHHHHHHhhhccccc------eeEEEEECC
Confidence            7764 333  48899999999999999999766555577      999999875

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08149 ATP synthase SpaL; Validated

Probab=100.00  E-value=3.3e-41  Score=325.00  Aligned_cols=204  Identities=23%  Similarity=0.389  Sum_probs=182.7

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecC--CCceE--EEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCc
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGR--SPRLV--LEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPI  125 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~--~~~l~--~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~  125 (266)
                      .+.+|+|++|.|.+++++++..  ++|+.|++...  ++.+.  +||+++. ++.+.+++|+++.|++.|++|..+++++
T Consensus         4 ~~~~g~v~~i~g~~i~~~~~~~--~~ge~~~i~~~~~~~~~~~~~evv~~~-~~~~~l~~~~~~~gi~~g~~v~~~~~~~   80 (428)
T PRK08149          4 LQRLAHPLRIQGPIIEAELPDV--AIGEICEIRAGWHSNEVIARAQVVGFQ-RERTILSLIGNAQGLSRQVVLKPTGKPL   80 (428)
T ss_pred             eeeeeEEEEEEeeEEEEEECCC--CcCCEEEEeecCCCCceeeEEEEEEee-CcEEEEEECCCccCCCCCCEEEEcCCcC
Confidence            5678999999999999998865  79999999431  23355  8999964 5788899999999999999999999999


Q ss_pred             cccCChhhhhhhhcccCccccCCC--CCC--CCCccccccCcccccccccccccccccceEeecccccccCceeeeecCC
Q psy17544        126 KIPVGAETLGRIINVIGEPIDERG--PID--TDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGA  201 (266)
Q Consensus       126 ~VpvG~~lLGRViD~~G~PlD~~~--~~~--~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~  201 (266)
                      ++|+|++|||||+|++|+|+|+.+  +..  ...++|++++||||++|.++++||.||+++||.++|+++|||++|||++
T Consensus        81 ~v~vg~~llGrv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~s  160 (428)
T PRK08149         81 SVWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASA  160 (428)
T ss_pred             EEEeChhhcCCeeCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCC
Confidence            999999999999999999999886  332  2457899999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        202 GVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       202 G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |+|||||+.+|+++ .+.  +++||++||||++|++||++++.+.+.++      |+++|++++
T Consensus       161 G~GKTTLl~~i~~~-~~~--dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~------~~~vV~~~s  215 (428)
T PRK08149        161 GCGKTSLMNMLIEH-SEA--DVFVIGLIGERGREVTEFVESLRASSRRE------KCVLVYATS  215 (428)
T ss_pred             CCChhHHHHHHhcC-CCC--CeEEEEEEeeCCccHHHHHHHHhhccccc------ceEEEEECC
Confidence            99999999988874 333  48899999999999999999999999988      999999875

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=100.00  E-value=8.2e-41  Score=323.85  Aligned_cols=206  Identities=28%  Similarity=0.426  Sum_probs=185.1

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEec--CCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCc
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEG--RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPI  125 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~--~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~  125 (266)
                      +..+.+|+|++|.|.++++.++.  +.+++.|++..  +++.+.+||+++.+ +.+.+++|++++||++|++|+++|+++
T Consensus        19 ~~~~~~G~v~~i~G~~v~~~~~~--~~~ge~~~i~~~~~~~~~~~eVi~~~~-~~v~l~~~~~t~gl~~G~~V~~tg~~~   95 (440)
T TIGR01026        19 RLVKRVGRVTKVKGLLIEAVGPQ--ASVGDLCLIERRGSEGRLVAEVVGFNG-EFVFLMPYEEVEGVRPGSKVLATGEGL   95 (440)
T ss_pred             CccceeeEEEEEEeeEEEEEcCC--CCcCCEEEEeecCCCCcEEEEEEEecC-CEEEEEEccCCcCCCCCCEEEeCCCcc
Confidence            34678999999999999999975  37999999953  13348999999865 799999999999999999999999999


Q ss_pred             cccCChhhhhhhhcccCccccCCC-CCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCcc
Q psy17544        126 KIPVGAETLGRIINVIGEPIDERG-PIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG  204 (266)
Q Consensus       126 ~VpvG~~lLGRViD~~G~PlD~~~-~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~G  204 (266)
                      ++|+|++|||||+|++|+|||+.+ ++.....+|++++||||++|.+++++|.||+++||.++|+++|||++|||++|+|
T Consensus        96 ~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G~sG~G  175 (440)
T TIGR01026        96 SIKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVG  175 (440)
T ss_pred             EEEcChhhhhceecCCCcccCCCCCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEECCCCCC
Confidence            999999999999999999999988 6665567799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        205 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       205 KT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ||||+.+|++. .+  .++.+|+++|||++|+++|++++...+.++      |+++|++++
T Consensus       176 KStLl~~I~~~-~~--~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~------~tvvv~~~~  227 (440)
T TIGR01026       176 KSTLLGMIARN-TE--ADVNVIALIGERGREVREFIEHDLGEEGLK------RSVVVVATS  227 (440)
T ss_pred             HHHHHHHHhCC-CC--CCEEEEEEEeecchHHHHHHHHHhcccccc------eEEEEEECC
Confidence            99999877764 33  348899999999999999999887777777      999999875

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=100.00  E-value=6.8e-41  Score=323.20  Aligned_cols=205  Identities=23%  Similarity=0.301  Sum_probs=183.9

Q ss_pred             cCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCc
Q psy17544         46 AAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPI  125 (266)
Q Consensus        46 ~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~  125 (266)
                      |++..+.+|+|++|.|.++++.++..  ++|+.|++.. + ...+||+++.+ +.+.+++|+++.||+.|++|.++|+++
T Consensus        15 ~~~~~~~~G~v~~v~g~~~~~~~~~~--~~ge~~~i~~-~-~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~tg~~~   89 (433)
T PRK07594         15 PPDGYCRWGRIQDVSATLLNAWLPGV--FMGELCCIKP-G-EELAEVVGING-SKALLSPFTSTIGLHCGQQVMALRRRH   89 (433)
T ss_pred             CCCccceeeEEEEEECCEEEEEECCc--CCCCEEEEec-C-CeEEEEEEEcC-CeEEEEEccCCcCCCCCCEEEeCCCcc
Confidence            34557788999999999999998764  7999999943 2 37899999765 677899999999999999999999999


Q ss_pred             cccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccH
Q psy17544        126 KIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK  205 (266)
Q Consensus       126 ~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GK  205 (266)
                      ++|+|++|||||+|++|+|||+.++. ...++|++..+|||++|..++++|.||+++||.++|+++|||++|||++|+||
T Consensus        90 ~v~vg~~llGrVid~~G~pld~~~~~-~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GK  168 (433)
T PRK07594         90 QVPVGEALLGRVIDGFGRPLDGRELP-DVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGK  168 (433)
T ss_pred             EEEeChhhccCEEcccCCCcCCCCCC-cccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCc
Confidence            99999999999999999999998763 45678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        206 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       206 T~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |||+.+|+++ .+.  +.+||+++|||++|++||++++.+.+.++      ++++|+++.
T Consensus       169 STLL~~I~~~-~~~--d~~vi~~iGeRgrEv~efl~~~~~~~~~~------rtv~vv~ts  219 (433)
T PRK07594        169 STLLAMLCNA-PDA--DSNVLVLIGERGREVREFIDFTLSEETRK------RCVIVVATS  219 (433)
T ss_pred             cHHHHHhcCC-CCC--CEEEEEEECCCchHHHHHHHHhhccCCcc------eEEEEEECC
Confidence            9999888764 344  47999999999999999999998888777      999998864

>PRK06315 type III secretion system ATPase; Provisional

Probab=100.00  E-value=7e-41  Score=323.83  Aligned_cols=207  Identities=29%  Similarity=0.446  Sum_probs=181.4

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcc
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK  126 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~  126 (266)
                      +..+.+|||++|.|.++++.++..  ++|+.|+|...++ .+.+||+++.+ +.+.+++++++.|++.|++|.++|++++
T Consensus        19 ~~~~~~G~v~~i~g~~~~~~~~~~--~~ge~~~i~~~~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~~g~~~~   95 (442)
T PRK06315         19 QLTTVVGRITEVVGMLIKAVVPDV--RVGEVCLVKRHGMEPLVTEVVGFTQ-NFVFLSPLGELTGVSPSSEVIPTGLPLH   95 (442)
T ss_pred             CcceeccEEEEEECCEEEEEECCc--ccCCEEEEecCCCCEEEEEEEEEcC-CeEEEEEccCCcCCCCCCEEEeCCCccE
Confidence            447789999999999999999864  8999999954221 48999999765 7899999999999999999999999999


Q ss_pred             ccCChhhhhhhhcccCccccC--CCCCC-CCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544        127 IPVGAETLGRIINVIGEPIDE--RGPID-TDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV  203 (266)
Q Consensus       127 VpvG~~lLGRViD~~G~PlD~--~~~~~-~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~  203 (266)
                      ||+|++|||||+|++|+|||+  .+++. ..+++|++.+||+|++|.++++||+||||+||.++|+++|||++|||++|+
T Consensus        96 v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~sG~  175 (442)
T PRK06315         96 IRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGV  175 (442)
T ss_pred             EEecccccCCEEeccCcccccccCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCCCC
Confidence            999999999999999999998  76654 335789999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHh-HhcCccccCCCCCceEEEeeccC
Q psy17544        204 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM-IESGVISLKDKSSKVNFLFNSRF  266 (266)
Q Consensus       204 GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l-~~~gvl~~~~~~~~~~~v~~q~~  266 (266)
                      |||+|+.+|+++...+  +..||+++|||++|+.+|+++. .+.+ ++      ++++|++++|
T Consensus       176 GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g-~~------~svvvvats~  230 (442)
T PRK06315        176 GKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEG-MK------RSVIVVSTSD  230 (442)
T ss_pred             CcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcC-Cc------eEEEEEeCCC
Confidence            9999999888754223  3688999999999999999874 4433 44      8888887664

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=7.6e-41  Score=322.94  Aligned_cols=204  Identities=23%  Similarity=0.332  Sum_probs=180.3

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcc
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK  126 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~  126 (266)
                      +..+.+|+|++|.|.++++.++..  ++|+.|+|...++ .+.+||++|. ++.+.+++|++++|++.|++|.+++++++
T Consensus        13 ~~~~~~G~v~~v~g~~~~~~~~~~--~~ge~~~i~~~~~~~~~~eVv~~~-~~~~~l~~~~~~~gi~~g~~v~~~~~~~~   89 (434)
T PRK07196         13 HLARVAGRLVRVTGLLLESVGCRL--AIGQRCRIESVDETFIEAQVVGFD-RDITYLMPFKHPGGVLGGARVFPSEQDGE   89 (434)
T ss_pred             CccceeeEEEEEEcCEEEEecCCC--CcCCEEEEEeCCCceEEEEEEEec-CCEEEEEECCCccCCCCCCEEEECCCccE
Confidence            346778999999999999999974  8999999954233 5899999975 57888999999999999999999999999


Q ss_pred             ccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHH
Q psy17544        127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT  206 (266)
Q Consensus       127 VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT  206 (266)
                      +|+|++|||||+|++|+|||+.+++..+..++++++||||++|.++++||+||+++||.++|+++|||++|||++|+|||
T Consensus        90 v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKS  169 (434)
T PRK07196         90 LLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKS  169 (434)
T ss_pred             EEcCccccCCeeCcCCCCcCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEEECCCCCCcc
Confidence            99999999999999999999998876666779999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHH-hHhcCccccCCCCCceEEEeec
Q psy17544        207 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE-MIESGVISLKDKSSKVNFLFNS  264 (266)
Q Consensus       207 ~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~-l~~~gvl~~~~~~~~~~~v~~q  264 (266)
                      ||+.+|++. .+.  +++|+++||||++|+++|+++ +.+.+ +.      |+.++|..
T Consensus       170 TLl~~I~g~-~~~--dv~vig~IGerg~ev~ef~~~~l~~~g-l~------rsvvv~~~  218 (434)
T PRK07196        170 VLLGMITRY-TQA--DVVVVGLIGERGREVKEFIEHSLQAAG-MA------KSVVVAAP  218 (434)
T ss_pred             HHHHHHhcc-cCC--CeEEEEEEeeecHHHHHHHHHHhhhcc-cc------eEEEEEec
Confidence            999887764 444  488899999999999999966 55555 44      67777654

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=8.8e-41  Score=322.51  Aligned_cols=205  Identities=24%  Similarity=0.384  Sum_probs=183.8

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCC--CceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCc
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRS--PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPI  125 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~--~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~  125 (266)
                      +..+.+|+|++|.|.+++++++..  ++++.|++...+  ..+.+||+++. ++.+.+++|+++.||+.|++|.++++++
T Consensus        14 ~~~~~~G~v~~v~g~~v~~~g~~~--~~ge~~~i~~~~~~~~~~~eVv~~~-~~~~~l~~~~~t~gl~~G~~V~~tg~~~   90 (434)
T PRK08472         14 NLSPRFGSITKISPTIIEADGLNP--SVGDIVKIESSDNGKECLGMVVVIE-KEQFGISPFSFIEGFKIGDKVFISKEGL   90 (434)
T ss_pred             CcceeeeEEEEEEccEEEEEecCC--CCCCEEEEecCCCCCceEEEEEEEe-CCeEEEEEccCCCCCCCCCEEEeCCCce
Confidence            447789999999999999999873  899999995422  34899999965 5789999999999999999999999999


Q ss_pred             cccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccH
Q psy17544        126 KIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK  205 (266)
Q Consensus       126 ~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GK  205 (266)
                      +||+|++|||||+|++|+|||+.+++...+++|++.+||||++|.+++++|.||+++||.|+|+++|||++|||++|+||
T Consensus        91 ~v~vg~~llGRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GK  170 (434)
T PRK08472         91 NIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGK  170 (434)
T ss_pred             EEEcChhhcCCEECCCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCCCH
Confidence            99999999999999999999999887766778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        206 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       206 T~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |||+.+|+++ ++.  +++||+++|||+||+++|+++.. .+.++      ++++|++++
T Consensus       171 StLl~~i~~~-~~~--~v~vi~~iGergrev~e~~~~~l-~~~l~------~tvvV~ats  220 (434)
T PRK08472        171 STLMGMIVKG-CLA--PIKVVALIGERGREIPEFIEKNL-GGDLE------NTVIVVATS  220 (434)
T ss_pred             HHHHHHHhhc-cCC--CEEEEEeeCccchhHHHHHHHHh-cCccc------ceEEEEECC
Confidence            9999988875 344  49999999999999999998643 33355      999998875

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=100.00  E-value=2.9e-40  Score=318.77  Aligned_cols=204  Identities=26%  Similarity=0.447  Sum_probs=183.9

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecC-CCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcccc
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGR-SPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIP  128 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~-~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vp  128 (266)
                      .+.+|+|++|.|.++++.++..  .+++.|++... +..+.+||+++.+ +.+.+++|++++||+.|++|.+||+++++|
T Consensus         3 ~~~~G~V~~v~g~~v~v~~~~~--~~ge~~~i~~~~~~~~~~eVi~~~~-~~~~l~~~~~~~gl~~G~~V~~tg~~~~v~   79 (422)
T TIGR02546         3 VRVRGRVTEVSGTLLKAVLPGA--RVGELCLIRRRDPSQLLAEVVGFTG-DEALLSPLGELHGISPGSEVIPTGRPLSIR   79 (422)
T ss_pred             cceeEEEEEEECcEEEEEECCC--CCCCEEEEeeCCCCeEEEEEEEEcC-CcEEEEEccCccCCCCCCEEEECCCCceEE
Confidence            4568999999999999998754  78999999632 3458999999865 678899999999999999999999999999


Q ss_pred             CChhhhhhhhcccCccccCCCCCCCCC--ccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHH
Q psy17544        129 VGAETLGRIINVIGEPIDERGPIDTDK--SAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT  206 (266)
Q Consensus       129 vG~~lLGRViD~~G~PlD~~~~~~~~~--~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT  206 (266)
                      +|++|||||+|++|+|||+.+++....  ++|++++||||++|.++++||.||+++||.++|+++|||++|||++|+|||
T Consensus        80 vg~~lLGrViD~~G~plD~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKS  159 (422)
T TIGR02546        80 VGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKS  159 (422)
T ss_pred             eChhhccCEeCCCCCcccCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChH
Confidence            999999999999999999998876653  689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        207 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       207 ~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ||+.+|+++ .+.  +.++|++||||++|+++|++++...+.++      +++++++++
T Consensus       160 tLl~~I~~~-~~~--~~~vi~~iG~~~~ev~~~~~~~~~~~~~~------~tvvv~~~s  209 (422)
T TIGR02546       160 TLLGMIARG-ASA--DVNVIALIGERGREVREFIEHHLGEEGRK------RSVLVVSTS  209 (422)
T ss_pred             HHHHHHhCC-CCC--CEEEEEEEccCCcCHHHHHHHHhcccccc------ceEEEeccc
Confidence            999888774 333  48999999999999999999998888877      999988764

>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B

Probab=100.00  E-value=5.9e-41  Score=306.81  Aligned_cols=135  Identities=27%  Similarity=0.429  Sum_probs=125.9

Q ss_pred             CccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544        124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV  203 (266)
Q Consensus       124 ~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~  203 (266)
                      +++||+|++|||||+|++|+|||+.+++....++|++.+||+|++|.+++|||+||||+||+|+|||||||+||||++|+
T Consensus         1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv   80 (276)
T cd01135           1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL   80 (276)
T ss_pred             CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence            46899999999999999999999998876677889999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHh----cCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        204 GKTVLIMELINNVAK----AHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       204 GKT~L~~~ii~~~a~----~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |||+|+.+|+++ ++    .+.++|||++||||+||++||++++.+.++++      |+++|++|+
T Consensus        81 GKt~L~~~i~~~-~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~------~tv~v~~t~  139 (276)
T cd01135          81 PHNELAAQIARQ-AGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALE------RVVLFLNLA  139 (276)
T ss_pred             ChhHHHHHHHHh-hhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcc------eEEEEEecC
Confidence            999999998875 43    12459999999999999999999999999998      999999986

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=1.2e-39  Score=315.48  Aligned_cols=206  Identities=22%  Similarity=0.393  Sum_probs=179.2

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEecC-CC--ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCC
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGR-SP--RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP  124 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~-~~--~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~  124 (266)
                      +..+.+|+|++|.|.+++++++..  ++++.|++... +.  .+.+||++|.+ +++.+++|+++.||++|++|.+||++
T Consensus        14 ~~~~~~G~v~~i~G~~i~~~~~~~--~ige~~~i~~~~~~~~~~~~EVi~~~~-~~~~l~~~~~~~gl~~g~~V~~tg~~   90 (438)
T PRK07721         14 DPYKRYGKVSRVIGLMIESKGPES--SIGDVCYIHTKGGGDKAIKAEVVGFKD-EHVLLMPYTEVAEIAPGCLVEATGKP   90 (438)
T ss_pred             CccceecEEEEEECcEEEEEECCC--CchheEEEEecCCCCceEEEEEEEEcC-CEEEEEEccCccCCCCCCEEEECCCc
Confidence            446789999999999999999864  79999998522 22  48999999876 56889999999999999999999999


Q ss_pred             ccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCcc
Q psy17544        125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG  204 (266)
Q Consensus       125 ~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~G  204 (266)
                      ++||+|++|||||+|++|+|||+.+......++|++.+||||++|.+++++|.||+++||.++++++|||++|||++|+|
T Consensus        91 ~~v~vg~~llGRv~d~~G~plD~~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~G  170 (438)
T PRK07721         91 LEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVG  170 (438)
T ss_pred             cEEEechhhcCCEECcCCCccCCCCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCCCC
Confidence            99999999999999999999998874444456799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        205 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       205 KT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ||||+.+|++. .+.  +..+|+++|||++|++||+++......+.      |+++|++++
T Consensus       171 KStLl~~I~~~-~~~--~~gvI~~~Gerg~ev~e~~~~~l~~~~l~------r~v~vv~~~  222 (438)
T PRK07721        171 KSTLMGMIARN-TSA--DLNVIALIGERGREVREFIERDLGPEGLK------RSIVVVATS  222 (438)
T ss_pred             HHHHHHHHhcc-cCC--CeEEEEEEecCCccHHHHHHhhcChhhhc------CeEEEEECC
Confidence            99999877764 333  47899999999999999998843333355      888888764

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=2.3e-39  Score=312.46  Aligned_cols=203  Identities=26%  Similarity=0.333  Sum_probs=180.6

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccc
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKI  127 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~V  127 (266)
                      +..+.+|+|++|.|.++++.++..  ++|+.|++.  ++.+.+||+++.+ +.+.+++|++++||+.|++|.+++++++|
T Consensus        17 ~~~~~~g~v~~~~g~~~~~~g~~~--~ige~~~i~--~~~~~~eV~~~~~-~~~~~~~~~~~~gi~~g~~v~~~~~~~~v   91 (432)
T PRK06793         17 PFYTKVGKVHSVQEQFFVAKGPKA--KIGDVCFVG--EHNVLCEVIAIEK-ENNMLLPFEQTEKVCYGDSVTLIAEDVVI   91 (432)
T ss_pred             CccceeeEEEEEEEEEEEEEcCCC--CcCCEEEEC--CCCEEEEEEEecC-CcEEEEEccCccCCCCCCEEEECCCccEE
Confidence            346778999999999999999865  799999994  3347899999865 57789999999999999999999999999


Q ss_pred             cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544        128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV  207 (266)
Q Consensus       128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~  207 (266)
                      |+|++|||||+|++|+|+|+.+++...+++|++++||+|++|..+++++.||+++||.++|+++|||++|||++|+|||+
T Consensus        92 ~vg~~~lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTt  171 (432)
T PRK06793         92 PRGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKST  171 (432)
T ss_pred             EcCHhhccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHH
Confidence            99999999999999999999877655567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHH-HhHhcCccccCCCCCceEEEeecc
Q psy17544        208 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYH-EMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       208 L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~-~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |+.+++.+. +.  +..+++++|||++|++||++ .+.+.| ++      ++++|+++.
T Consensus       172 Ll~~Ia~~~-~~--~~gvI~~iGerg~ev~e~~~~~l~~~g-l~------~tvvv~~ts  220 (432)
T PRK06793        172 LLGMIAKNA-KA--DINVISLVGERGREVKDFIRKELGEEG-MR------KSVVVVATS  220 (432)
T ss_pred             HHHHHhccC-CC--CeEEEEeCCCCcccHHHHHHHHhhhcc-cc------eeEEEEECC
Confidence            999998864 44  47889999999999999987 565665 65      788887653

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=100.00  E-value=4.1e-40  Score=301.45  Aligned_cols=136  Identities=79%  Similarity=1.242  Sum_probs=128.8

Q ss_pred             CccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544        124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV  203 (266)
Q Consensus       124 ~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~  203 (266)
                      +++||+|++|||||+|++|+|||+.+++...++||+++++|||++|.++++||+||||+||+|+|||||||++|||++|+
T Consensus         1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~   80 (274)
T cd01133           1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV   80 (274)
T ss_pred             CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence            57899999999999999999999998877777899999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        204 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       204 GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |||+|+.++++++.+.+.+++||++||||+||++||++++.+.++++      |+++|++++
T Consensus        81 GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~------~tvvv~~t~  136 (274)
T cd01133          81 GKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLS------KTALVYGQM  136 (274)
T ss_pred             ChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcc------eeEEEEECC
Confidence            99999999999886555679999999999999999999999999988      999999986

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=9.5e-39  Score=309.05  Aligned_cols=211  Identities=27%  Similarity=0.387  Sum_probs=182.8

Q ss_pred             ccccccCCCCccccEEEEEECcEEEEEecC-CCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544         41 HYAAKAAPKGKGNGRVVAVIGAVVDVQFDH-DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA  119 (266)
Q Consensus        41 ~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~-~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~  119 (266)
                      .|.| +.+..+.+|+|++|.|.++++.+++ .+ ++|+.|+|..+++...+||+++. ++++.+++|+++.||+.|++|.
T Consensus        16 ~~~~-~~~~~~~~G~v~~v~g~~~~~~g~~~~~-~iGe~~~i~~~~~~~~~eVv~~~-~~~~~l~~~~~~~gi~~g~~v~   92 (450)
T PRK06002         16 RYAA-PEPLVRIGGTVSEVTASHYRVRGLSRFV-RLGDFVAIRADGGTHLGEVVRVD-PDGVTVKPFEPRIEIGLGDAVF   92 (450)
T ss_pred             hccc-ccCccceeEEEEEEeceEEEEEcCccCC-CCCCEEEEECCCCcEEEEEEEEe-CCeEEEEEccCCcCCCCCCEEE
Confidence            5555 2345788999999999999999994 33 89999999643445889999975 5788999999999999999999


Q ss_pred             ecCCCccccCChhhhhhhhcccCccccCCCCCCCCC-ccccccCcccccccccccccccccceEeecccccccCceeeee
Q psy17544        120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDK-SAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLF  198 (266)
Q Consensus       120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~-~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIf  198 (266)
                      . ++++++++|++|||||+|++|+|||+.+++...+ ++|++.+|||+++|..+++++.||+++||.|+||++|||++||
T Consensus        93 ~-~~~~~v~vg~~llGRV~d~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~  171 (450)
T PRK06002         93 R-KGPLRIRPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIF  171 (450)
T ss_pred             e-CCCceeecCcccccCEECCCCcCCCCCCCCCCCcceeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCCcEEEEE
Confidence            9 6799999999999999999999999998876644 5799999999999999999999999999999999999999999


Q ss_pred             cCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        199 GGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       199 gg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |++|+|||||+.+|+.. .  +.+..+|+++|||++|+++|+++....- ++      +++.++.|+
T Consensus       172 G~SGsGKTTLL~~Ia~l-~--~pd~gvv~liGergrev~e~~~~~l~~~-r~------rtI~vV~qs  228 (450)
T PRK06002        172 AGSGVGKSTLLAMLARA-D--AFDTVVIALVGERGREVREFLEDTLADN-LK------KAVAVVATS  228 (450)
T ss_pred             CCCCCCHHHHHHHHhCC-C--CCCeeeeeecccCCccHHHHhHHHHHHh-hC------CeEEEEEcC
Confidence            99999999999877653 2  3348899999999999999998765432 44      778888775

>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=4.5e-38  Score=299.89  Aligned_cols=202  Identities=26%  Similarity=0.453  Sum_probs=186.3

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccC
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPV  129 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vpv  129 (266)
                      .+..|+|++|...+++|+|.+++ ..++.+++.++   ..+ ++..++++.|.+.++++...|+.|+.|..||+.++||+
T Consensus        25 ~~~~g~V~sv~DgIa~v~Gl~~~-~~~E~~ef~~~---v~G-~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~~Vpv   99 (504)
T COG0056          25 VKEVGTVISVGDGIARVSGLENV-MAGELVEFPGG---VKG-MALNLEEDSVGAVILGDYSDIKEGDEVKRTGRILEVPV   99 (504)
T ss_pred             hhccceEEEEecceEEEecCchh-hcCceEEecCC---cEE-EEEeccccceeEEEecCCccccCCcEEEeeCceEEEec
Confidence            44579999999999999999876 77888998743   344 44457899999999999999999999999999999999


Q ss_pred             ChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHH
Q psy17544        130 GAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI  209 (266)
Q Consensus       130 G~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~  209 (266)
                      |+++||||+|++|+|+|+.+++..+.+.|++..+|..++|.+++|||+|||++||+|+|||||||.+|+|+.++|||.++
T Consensus       100 g~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIA  179 (504)
T COG0056         100 GEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIA  179 (504)
T ss_pred             chhhcceeecCCCCccCCCCCccccccCccccccCceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEee
Q psy17544        210 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFN  263 (266)
Q Consensus       210 ~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~  263 (266)
                      .+.|.|| +..+.+|||++||++...+..+++.|++.|+|+      .|.+|..
T Consensus       180 idtIiNQ-k~~~v~CIYVAIGQK~stva~vv~tL~e~gAmd------yTiVV~A  226 (504)
T COG0056         180 IDTIINQ-KGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMD------YTIVVAA  226 (504)
T ss_pred             HHHHHhc-ccCCcEEEEEEcccchHHHHHHHHHHHHcCCcc------ceEEEEe
Confidence            9999997 566679999999999999999999999999998      7776653

>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain

Probab=100.00  E-value=1.1e-38  Score=291.78  Aligned_cols=134  Identities=27%  Similarity=0.533  Sum_probs=122.2

Q ss_pred             ccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCcc
Q psy17544        125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG  204 (266)
Q Consensus       125 ~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~G  204 (266)
                      ++||+|++|||||+|++|+|||+.+++...++||++.++|+|++|.++++||+||||+||+|+|||||||++|||++|+|
T Consensus         2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G   81 (274)
T cd01132           2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG   81 (274)
T ss_pred             eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence            57999999999999999999999988777778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        205 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       205 KT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ||+|+.+++.|+++ ++.++||++||||+||++||++++.+.++++      |+++|++++
T Consensus        82 Kt~L~l~~i~~~~~-~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~------~tvvv~~t~  135 (274)
T cd01132          82 KTAIAIDTIINQKG-KKVYCIYVAIGQKASTVAQVVKTLEEHGAME------YTIVVAATA  135 (274)
T ss_pred             ccHHHHHHHHHhcC-CCeEEEEEecccchHHHHHHHHHHHhcCccc------eeEEEEeCC
Confidence            99995445444543 3356799999999999999999999999988      999999885

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.

>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]

Probab=100.00  E-value=5.7e-34  Score=269.23  Aligned_cols=198  Identities=24%  Similarity=0.325  Sum_probs=182.4

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCE-EEecCCCccc
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQV-VADSGNPIKI  127 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~-V~~tg~~~~V  127 (266)
                      .+.+-+|+.|.|+++.|++-++. ..++.++|...++ ...++|+.. ..+.+.+|+|++|.|+...+. |+++|+++++
T Consensus         4 ~~~Y~~i~~i~Gplv~ve~~eg~-~y~E~v~i~~~~G~~r~gqVle~-~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i   81 (463)
T COG1156           4 VKEYTTISEIKGPLIIVEGVEGA-SYGELVEIETPDGEVRRGQVLEV-RGDKAVVQVFEGTSGLDTKGTTVRFTGETLKI   81 (463)
T ss_pred             cceeeeEEEeccceEEEecccCC-CcceEEEEECCCCCeeeeeEeec-cCceEEEEEeecccCCCCCCceEEEeCceEEE
Confidence            45678999999999999987765 7899999988665 568889885 567888999999999996655 9999999999


Q ss_pred             cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544        128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV  207 (266)
Q Consensus       128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~  207 (266)
                      ++++++||||+|++|+|||+.+.+.+++...|++.|.||..|..++++++|||++||+|+++.+|||++||++||..++.
T Consensus        82 ~vs~dllGRifnG~G~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~  161 (463)
T COG1156          82 PVSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNE  161 (463)
T ss_pred             eecHHhhhhhhcCCCCcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCc----EEEEEeecCCchHHHHHHHHhHhcCccc
Q psy17544        208 LIMELINNVAKAHGG----YSVFAGVGERTREGNDLYHEMIESGVIS  250 (266)
Q Consensus       208 L~~~ii~~~a~~~~~----v~V~alIGER~rEv~ef~~~l~~~gvl~  250 (266)
                      |+++|++ ||+..++    .+||+++|-...|.+.|.++|.+.|+++
T Consensus       162 LaaqIar-QA~v~~~~e~favVfaamGit~eea~fF~~~fe~tGal~  207 (463)
T COG1156         162 LAAQIAR-QATVDGEEEEFAVVFAAMGITHEEALFFMDEFEETGALD  207 (463)
T ss_pred             HHHHHHH-hcccCCCccceeEEEeecCccHHHHHHHHHHHHhhhhhh
Confidence            9999998 6765442    7999999999999999999999999998

>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]

Probab=100.00  E-value=1.4e-33  Score=272.93  Aligned_cols=203  Identities=25%  Similarity=0.358  Sum_probs=170.5

Q ss_pred             ccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544         53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE  132 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~  132 (266)
                      .|+|++|.|++|.+++.... .+++.|+|  ++..+.+||+++.| +++.+|+|++|.||++|++|..||+|+++.+||.
T Consensus         2 ~G~i~~isGp~V~a~gm~~~-~my~~v~V--g~~~L~gEiI~i~g-d~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGPG   77 (588)
T COG1155           2 MGKIIRISGPVVVAEGMEGA-KMYDVVKV--GEMGLIGEIIRIEG-NRATIQVYEDTAGIRPGEKVENTGRPLSVELGPG   77 (588)
T ss_pred             CceEEEEECCEEEEecCcCC-ceEEEEEE--cCCceeEEEEEEeC-CeEEEEEEeecCCCCCCCeeecCCCceEEEeCcc
Confidence            69999999999999988765 77888888  55689999999755 7899999999999999999999999999999999


Q ss_pred             hhhhhhcccCccccCC--------------CCCCCCCc------------------------------------------
Q psy17544        133 TLGRIINVIGEPIDER--------------GPIDTDKS------------------------------------------  156 (266)
Q Consensus       133 lLGRViD~~G~PlD~~--------------~~~~~~~~------------------------------------------  156 (266)
                      ||+.|+|+++||||..              ++++.+..                                          
T Consensus        78 ll~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v  157 (588)
T COG1155          78 LLKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKV  157 (588)
T ss_pred             HHhhhhhhccChHHHHHHHhhhHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEE
Confidence            9999999999999752              12222111                                          


Q ss_pred             --------------------------------cccccCcccccccccccccccccceEeecccccccCceeeeecCCCcc
Q psy17544        157 --------------------------------AAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG  204 (266)
Q Consensus       157 --------------------------------~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~G  204 (266)
                                                      ||+..+- +..++.++++||.||+|+||+|||+.||+..+|.||+|+|
T Consensus       158 ~~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~r-p~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsG  236 (588)
T COG1155         158 TWIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKAR-PVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSG  236 (588)
T ss_pred             EEEecCCCceeeEEEEEEecCCCeEEEEEEEeccccCCc-cccccCCCCCcccccceeehhhcccccCccccccCCCCCC
Confidence                                            1121111 1256678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccc-cCCCCCceEEEee
Q psy17544        205 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS-LKDKSSKVNFLFN  263 (266)
Q Consensus       205 KT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~-~~~~~~~~~~v~~  263 (266)
                      ||++.+++++ ++++|  ++||++||||++|++|.+.+|++.--=. .+..+.+|.++++
T Consensus       237 KTV~qh~laK-~sdad--iVVyigCGERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaN  293 (588)
T COG1155         237 KTVSQHTLSK-LADGD--IVIYVGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIAN  293 (588)
T ss_pred             cEehhhhhhh-hccCC--EEEEEecCCccchHHHHHHhCccccCCCCCCcccceeeEeec
Confidence            9999999999 46665  9999999999999999999999865421 4667788888875

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=99.96  E-value=1.8e-30  Score=243.16  Aligned_cols=133  Identities=29%  Similarity=0.571  Sum_probs=123.5

Q ss_pred             CccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544        124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV  203 (266)
Q Consensus       124 ~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~  203 (266)
                      +++||+|++|||||+|++|+|||+.+++...+++|++.+||+|++|.+++++|.||+++||.++|+++|||++|||++|+
T Consensus         1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~   80 (326)
T cd01136           1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV   80 (326)
T ss_pred             CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence            47899999999999999999999998876667889999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        204 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       204 GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |||||+.+|+++ ...  +.++|++||||++|++||++++.+.+.++      |+++|++++
T Consensus        81 GKTtLl~~Ia~~-~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~------rtvvv~~t~  133 (326)
T cd01136          81 GKSTLLGMIARG-TTA--DVNVIALIGERGREVREFIEKDLGEEGLK------RSVVVVATS  133 (326)
T ss_pred             ChHHHHHHHhCC-CCC--CEEEEEEEecCCccHHHHHHHHHhcCccc------eEEEEEcCC
Confidence            999999888764 333  48999999999999999999999999888      999999886

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A

Probab=99.96  E-value=1.8e-30  Score=244.36  Aligned_cols=105  Identities=27%  Similarity=0.356  Sum_probs=94.3

Q ss_pred             cccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHH
Q psy17544        157 AAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG  236 (266)
Q Consensus       157 ~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv  236 (266)
                      ||++.++|++ +|..+++||.||||+||+|+||+||||++|||++|+|||+|+++|+++ +++  +++||++||||+||+
T Consensus       123 ~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~-~~~--dvvVyv~iGERg~Ev  198 (369)
T cd01134         123 WPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKY-SNS--DIVIYVGCGERGNEM  198 (369)
T ss_pred             eecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHHHHHHHhC-CCC--CEEEEEEeCCChHHH
Confidence            4667777777 999999999999999999999999999999999999999999999885 555  499999999999999


Q ss_pred             HHHHHHhHhcCcccc-CCCCCceEEEeecc
Q psy17544        237 NDLYHEMIESGVISL-KDKSSKVNFLFNSR  265 (266)
Q Consensus       237 ~ef~~~l~~~gvl~~-~~~~~~~~~v~~q~  265 (266)
                      +||+++|++.....+ ++.++||++|++++
T Consensus       199 ~e~l~ef~~l~~~~~~~~~m~rtvlV~nts  228 (369)
T cd01134         199 TEVLEEFPELTDPVTGEPLMKRTVLIANTS  228 (369)
T ss_pred             HHHHHHHHhhccccccCCccceEEEEEECC
Confidence            999999998776653 67788999999985

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.

>KOG1351|consensus

Probab=99.96  E-value=1.1e-29  Score=233.17  Aligned_cols=216  Identities=22%  Similarity=0.344  Sum_probs=184.1

Q ss_pred             cccccccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCC-
Q psy17544         36 FTINKHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLV-  113 (266)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~-  113 (266)
                      .++.|+|..+|..   .+-+|..|.|++|....-. .|...+.+.+.-.++ .-.++|..+.| +.+.+++|++|.|+- 
T Consensus        10 ~a~~~~~~~~prl---~y~tv~gvngplvild~vk-fp~y~eiv~ltlpdgt~r~gqvlev~g-~kavvqvfegtsgid~   84 (489)
T KOG1351|consen   10 TAVIENYTTEPRL---TYRTVSGVNGPLVILDKVK-FPKYAEIVNLTLPDGSVRSGQVLEVSG-EKAVVQVFEGTSGIDA   84 (489)
T ss_pred             HHHHhccccCCce---eEeeecccCCceEEEeccc-ccchhhheEEecCCCCeecceEEEecC-CeeEEEEecccccccc
Confidence            5667999998754   4778999999999765433 345566665544333 23456666554 566799999999998 


Q ss_pred             CCCEEEecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCc
Q psy17544        114 RGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGG  193 (266)
Q Consensus       114 ~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQ  193 (266)
                      ..+.|++||+.++.||++++||||+|+.|+|||.++++-.+++..|.+.|+||..|-+++|++.|||.+||.|++|++||
T Consensus        85 k~t~~eftg~~lr~pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargq  164 (489)
T KOG1351|consen   85 KKTTVEFTGEILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQ  164 (489)
T ss_pred             ccceEEEecccccccccHHHhhhhhcCCCCccCCCCCcChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCCccHHHHHHHHHHHHHh-----------cC--CcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEE
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVAK-----------AH--GGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNF  260 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a~-----------~~--~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~  260 (266)
                      |++||+.+|..++.++.+|++ |+.           .|  +-.+|||++|-.-+..+.|.++|+|.|.++      ++.|
T Consensus       165 kipifsaaglphneiaaqicr-qaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeengsm~------~v~l  237 (489)
T KOG1351|consen  165 KIPIFSAAGLPHNEIAAQICR-QAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSME------RVCL  237 (489)
T ss_pred             ccceeecCCCChhHHHHHHHH-hcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhHHhcCCcc------ceEE
Confidence            999999999999999999998 441           01  127999999999999999999999999998      7777


Q ss_pred             Eee
Q psy17544        261 LFN  263 (266)
Q Consensus       261 v~~  263 (266)
                      +.+
T Consensus       238 fln  240 (489)
T KOG1351|consen  238 FLN  240 (489)
T ss_pred             EEe
Confidence            654

>PRK14698 V-type ATP synthase subunit A; Provisional

Probab=99.96  E-value=1.3e-28  Score=257.44  Aligned_cols=151  Identities=25%  Similarity=0.369  Sum_probs=125.6

Q ss_pred             cccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCCh
Q psy17544         52 GNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGA  131 (266)
Q Consensus        52 ~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~  131 (266)
                      .+|+|++|.|+++++.++..+ ++|+.|+|.  +..+.+||+++. ++.+.+++|+++.||+.|++|.++++++++++|+
T Consensus         3 ~~G~V~~V~G~lv~a~g~~~~-~iGE~v~I~--~~~l~gEVIg~~-~d~a~iq~~e~t~Gl~~G~~V~~tg~~l~V~lG~   78 (1017)
T PRK14698          3 AKGRIIRVTGPLVIADGMKGA-KMYEVVRVG--ELGLIGEIIRLE-GDKAVIQVYEETAGLKPGEPVEGTGSSLSVELGP   78 (1017)
T ss_pred             CceEEEEEEcCEEEEecCcCC-CCCCEEEEC--CCcEEEEEEEEe-CCEEEEEECCCCCCCCCCCEEEEcCCcceeecCH
Confidence            479999999999999998544 899999993  345899999975 5788899999999999999999999999999999


Q ss_pred             hhhhhhhcccCccccCC--------------CCCCCCCcc----------------------------------------
Q psy17544        132 ETLGRIINVIGEPIDER--------------GPIDTDKSA----------------------------------------  157 (266)
Q Consensus       132 ~lLGRViD~~G~PlD~~--------------~~~~~~~~~----------------------------------------  157 (266)
                      +|||||+|++|+||+..              ++++.++.|                                        
T Consensus        79 ~LLGRV~DGlGrPL~~~~~~~~~~i~~g~~~~~l~~~~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~  158 (1017)
T PRK14698         79 GLLTSIYDGIQRPLEVIREKSGDFIARGISAPALPRDKKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGE  158 (1017)
T ss_pred             HHhhcccCCCCChHHHHHHHhcccccCCCCCCCCCCCCeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEE
Confidence            99999999999999752              122222211                                        


Q ss_pred             -----------------------------------ccccCcccccccccccccccccceEeecccccccCceeeeecCCC
Q psy17544        158 -----------------------------------AIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG  202 (266)
Q Consensus       158 -----------------------------------pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G  202 (266)
                                                         |+.. |-+..++.+++.||.||+|+||+||||+||++.+|+|++|
T Consensus       159 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~wpvr~-~r~~~~~~~~~~pl~tgqrv~d~~fp~~~ggt~~~~G~~G  237 (1017)
T PRK14698        159 IVEIADEGEYTIEEVIAKVKTPSGEIKELKMYQRWPVRV-KRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFG  237 (1017)
T ss_pred             EEEEcCCCCcceeeEEEEEEcCCCCEEEeeeEecCCCCC-CCcccccCCCCcccccccchHhhhhhhhcCceeEeccCCC
Confidence                                               1111 1123567788999999999999999999999999999999


Q ss_pred             ccHHH
Q psy17544        203 VGKTV  207 (266)
Q Consensus       203 ~GKT~  207 (266)
                      +|||+
T Consensus       238 ~GKCV  242 (1017)
T PRK14698        238 SGKCV  242 (1017)
T ss_pred             cCccc
Confidence            99943

>KOG1352|consensus

Probab=99.96  E-value=4.6e-30  Score=242.28  Aligned_cols=206  Identities=23%  Similarity=0.375  Sum_probs=169.7

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccC
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPV  129 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vpv  129 (266)
                      .+.+|+|.+|+|+||.++...++ ..+++++|  +...+.+||+++ +.+.+.+|++++|.|+..||+|..||+|+++.+
T Consensus        18 es~~G~v~~VSGPVV~a~~M~G~-aMYELVrV--Gh~~LvGEiIrl-egD~aTIQVYEeTsG~tVgDpvlrTgkPLsvEL   93 (618)
T KOG1352|consen   18 ESEYGRVYSVSGPVVVAENMAGC-AMYELVRV--GHDELVGEIIRL-EGDMATIQVYEETSGLTVGDPVLRTGKPLSVEL   93 (618)
T ss_pred             hhccceEEeccCceEehhcccch-HHHHHHHc--chHhhhhheeEe-cCceeEEEEEeccCCcccCCchhhcCCcceEee
Confidence            45689999999999999877554 67788887  456799999995 557999999999999999999999999999999


Q ss_pred             ChhhhhhhhcccCccccCCCC---------------CCCC---Ccc----------------------------------
Q psy17544        130 GAETLGRIINVIGEPIDERGP---------------IDTD---KSA----------------------------------  157 (266)
Q Consensus       130 G~~lLGRViD~~G~PlD~~~~---------------~~~~---~~~----------------------------------  157 (266)
                      ||.++|.|+|++.|||.....               ++.+   ++.                                  
T Consensus        94 GPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lpPr  173 (618)
T KOG1352|consen   94 GPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLPPR  173 (618)
T ss_pred             CcchhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceeecCCc
Confidence            999999999999999954211               1111   011                                  


Q ss_pred             --------------------------------------ccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544        158 --------------------------------------AIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG  199 (266)
Q Consensus       158 --------------------------------------pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg  199 (266)
                                                            |+.. |-+..+..+.+.||.||.|++|+|+||..|+...|.|
T Consensus       174 ~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~-pRPv~ekl~an~PLltGQRvLDalfPcVqGGTtaIPG  252 (618)
T KOG1352|consen  174 ARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQ-PRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPG  252 (618)
T ss_pred             cCceEEEEecCCccccccEEEEEeecCceeeEEEEEecccCC-CcchhhccCCCCcccccchHHHhhcchhcCCccccCc
Confidence                                                  1110 1112455667899999999999999999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcc-c--cCCCCCceEEEee
Q psy17544        200 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI-S--LKDKSSKVNFLFN  263 (266)
Q Consensus       200 g~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl-~--~~~~~~~~~~v~~  263 (266)
                      ..|||||++-+.+.+. +..  |++||++||||++|+.|.+.+|++..+. +  -.++++||+||.+
T Consensus       253 AFGCGKTVISQsLSKY-SNS--D~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVAN  316 (618)
T KOG1352|consen  253 AFGCGKTVISQSLSKY-SNS--DAIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVAN  316 (618)
T ss_pred             ccccchHHHHHHHhhc-cCC--CeEEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhc
Confidence            9999999999999885 334  4999999999999999999999998864 2  3788999999975

>PRK12608 transcription termination factor Rho; Provisional

Probab=99.94  E-value=5.4e-27  Score=222.79  Aligned_cols=131  Identities=23%  Similarity=0.203  Sum_probs=118.2

Q ss_pred             CCCCCCCCCEEEecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccc-cccceEeecc
Q psy17544        108 GTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEIL-VTGIKVVDLL  186 (266)
Q Consensus       108 ~t~Gl~~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l-~TGIraID~L  186 (266)
                      ...+|+.|+.|..++++   ++++.+||||+|++|+|+|+..    ....+.+..|++|.+|.++++++ .+|+|+||+|
T Consensus        55 ~~~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~----~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~l  127 (380)
T PRK12608         55 RRFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA----RRPHFDDLTPLHPRERLRLETGSDDLSMRVVDLV  127 (380)
T ss_pred             HHhCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcc----cccCcCcCCCCCccccccccccCcchhHhhhhhe
Confidence            35689999999999998   9999999999999999999873    23446778899999999999999 9999999999


Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcE-EEEEeecCCchHHHHHHHHhHh
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY-SVFAGVGERTREGNDLYHEMIE  245 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v-~V~alIGER~rEv~ef~~~l~~  245 (266)
                      +|||||||++|||++|+|||||+.+++++..++++++ +++++||||++|++||++.+..
T Consensus       128 ~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~  187 (380)
T PRK12608        128 APIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKG  187 (380)
T ss_pred             eecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhh
Confidence            9999999999999999999999999999876655555 7999999999999999999865

>KOG1353|consensus

Probab=99.90  E-value=8.1e-24  Score=190.63  Aligned_cols=190  Identities=23%  Similarity=0.345  Sum_probs=165.3

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccc
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKI  127 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~V  127 (266)
                      .....+|+|.+|-+.+.+|.+..++ ...|.++++.+   +++ ..-+++.+++.+.+|++..-++.|+.|..|+....+
T Consensus        16 a~leEtgrVLsIGdGIArV~GL~nv-QAeEmvEFssG---lKg-malnle~~~vg~v~~g~d~~ikeg~~VkrTgaIvDV   90 (340)
T KOG1353|consen   16 ADLEETGRVLSIGDGIARVYGLTNV-QAEEMVEFSSG---LKG-MALNLEGENVGVVVFGEDSLIKEGDTVKRTAAISDV   90 (340)
T ss_pred             cchhhccceEEEcCceeeeeccccc-chHHHHhhhcc---ccc-hhccccCCceEEEEEcCcceeccCceEEeeeeeecc
Confidence            3466789999999999999999876 55677777653   222 244566788999999999999999999999999999


Q ss_pred             cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544        128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV  207 (266)
Q Consensus       128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~  207 (266)
                      |+++.||||+.|++|+|+|+.+++.....+        ...|..+.||+.||++++|.+.|||+|||..|+|+..+|||.
T Consensus        91 pvg~~LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmqtg~KAvdslVpigRgqrELiIgdRqTGkTs  162 (340)
T KOG1353|consen   91 PPLKALLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTS  162 (340)
T ss_pred             CchHHHhhhhhhhhcCeecCCCCccccccc--------cccceeeechhhhhhhHhhceeeeccCceEEEeccccCCcee
Confidence            999999999999999999999998876544        457889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc-C------CcEEEEEeecCCchHHHHHHHHhHhcCccc
Q psy17544        208 LIMELINNVAKA-H------GGYSVFAGVGERTREGNDLYHEMIESGVIS  250 (266)
Q Consensus       208 L~~~ii~~~a~~-~------~~v~V~alIGER~rEv~ef~~~l~~~gvl~  250 (266)
                      |..+.+.|+... +      +-+|||+.||++...|..++..|.+.++++
T Consensus       163 la~dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a~~  212 (340)
T KOG1353|consen  163 LAIDTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADAME  212 (340)
T ss_pred             eeehhhhhhhhhcccccccceEEEEEEecccchhHHHHHHHHHHhcCCce
Confidence            998888776421 1      138999999999999999999999999997

>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.86  E-value=3.2e-22  Score=177.86  Aligned_cols=79  Identities=43%  Similarity=0.743  Sum_probs=73.7

Q ss_pred             ccceEeecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCc
Q psy17544        178 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSK  257 (266)
Q Consensus       178 TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~  257 (266)
                      ||||+||+|+||+||||++|||++|+|||+|+++|++|+ +++  ++||++||||++|++||++++.+.++++      |
T Consensus         1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-~~d--~~V~~~iGer~~Ev~~~~~~~~~~~~~~------~   71 (215)
T PF00006_consen    1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-DAD--VVVYALIGERGREVTEFIEELKGEGALE------R   71 (215)
T ss_dssp             -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-TTT--EEEEEEESECHHHHHHHHHHHHHTTGGG------G
T ss_pred             CCCceeccccccccCCEEEEEcCcccccchhhHHHHhcc-ccc--ceeeeeccccchhHHHHHHHHhhccccc------c
Confidence            899999999999999999999999999999999999985 343  7899999999999999999999999998      9


Q ss_pred             eEEEeecc
Q psy17544        258 VNFLFNSR  265 (266)
Q Consensus       258 ~~~v~~q~  265 (266)
                      +++|++++
T Consensus        72 t~vv~~t~   79 (215)
T PF00006_consen   72 TVVVAATS   79 (215)
T ss_dssp             EEEEEEET
T ss_pred             cccccccc
Confidence            99999985

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....

>PRK12678 transcription termination factor Rho; Provisional

Probab=99.84  E-value=6.4e-21  Score=188.72  Aligned_cols=131  Identities=21%  Similarity=0.196  Sum_probs=98.6

Q ss_pred             CCCCCCCCCEEEecCCCccccC------ChhhhhhhhcccCccccCCCC-CCCCCccccccCccccccccccc-cccccc
Q psy17544        108 GTEGLVRGQVVADSGNPIKIPV------GAETLGRIINVIGEPIDERGP-IDTDKSAAIHADAPEFVEMSVEQ-EILVTG  179 (266)
Q Consensus       108 ~t~Gl~~G~~V~~tg~~~~Vpv------G~~lLGRViD~~G~PlD~~~~-~~~~~~~pI~~~~p~~~~R~~~~-e~l~TG  179 (266)
                      ...+|+.|+.|...-++.+=.-      -..-|-||..++|.+.+.... ..+++     -.|++|.+|..++ +|+.||
T Consensus       329 rr~~Lr~Gd~v~G~vr~p~~~e~~~~r~k~~~l~~v~~vNg~~~e~~~~r~~F~~-----Ltp~~P~~R~~le~e~~~~g  403 (672)
T PRK12678        329 RKNGLRKGDAVTGAVRAPREGEQGNQRQKFNPLVRLDSVNGMSPEEAKKRPEFGK-----LTPLYPNERLRLETEPKKLT  403 (672)
T ss_pred             HHcCCCCCCEEEEeecCCCCCccccccceeeeeeeEeeeCCCChHHhccCCCccc-----CCCCChHHhcccccCccccc
Confidence            3468889999886433221110      112556676677776654321 11112     2477999999998 999999


Q ss_pred             ceEeecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHh
Q psy17544        180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEM  243 (266)
Q Consensus       180 IraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l  243 (266)
                      +|+||+|+|||||||.+|||++|+|||||+.+|++..++++.+ .++|++||||++||+||.+.+
T Consensus       404 iRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsV  468 (672)
T PRK12678        404 TRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSV  468 (672)
T ss_pred             ceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhc
Confidence            9999999999999999999999999999999999876655555 578999999999999997665

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=99.82  E-value=2e-20  Score=178.88  Aligned_cols=132  Identities=20%  Similarity=0.162  Sum_probs=105.6

Q ss_pred             CCCCCCCCCEEEecCCCccccCChhhhhhhhcccCccccCCCC-CCCCCccccccCcccccccccccc--cccccceEee
Q psy17544        108 GTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGP-IDTDKSAAIHADAPEFVEMSVEQE--ILVTGIKVVD  184 (266)
Q Consensus       108 ~t~Gl~~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~-~~~~~~~pI~~~~p~~~~R~~~~e--~l~TGIraID  184 (266)
                      ...+|+.||.|...-++.+=.--..-|-+|...+|.+.+.... ...++     -.|++|.+|..+++  +++||+|+||
T Consensus        87 r~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~r~~f~~-----l~p~~p~~R~~le~~~~~~~~~rvID  161 (416)
T PRK09376         87 RRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFEN-----LTPLYPNERLRLETGNPEDLSTRIID  161 (416)
T ss_pred             HhcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcCCCCccc-----CCCCChhhcccccCCCCcccceeeee
Confidence            3568999999998766543222233567888888888875431 12222     24789999999998  8999999999


Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHhH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEMI  244 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l~  244 (266)
                      +|+|||||||.+||||+|+|||||+.+++++....|.+ .+++++||||++|+.||++++.
T Consensus       162 ~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIl  222 (416)
T PRK09376        162 LIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVK  222 (416)
T ss_pred             eecccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhc
Confidence            99999999999999999999999999999876554444 5688999999999999999996

>COG1158 Rho Transcription termination factor [Transcription]

Probab=99.55  E-value=7.7e-15  Score=137.28  Aligned_cols=133  Identities=21%  Similarity=0.222  Sum_probs=98.6

Q ss_pred             CCCCCCCCEEEecCCCccccCChhhhhhhhcccCccccCC-CCCCCCCccccccCccccccccccc-----ccccccceE
Q psy17544        109 TEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDER-GPIDTDKSAAIHADAPEFVEMSVEQ-----EILVTGIKV  182 (266)
Q Consensus       109 t~Gl~~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~~-~~~~~~~~~pI~~~~p~~~~R~~~~-----e~l~TGIra  182 (266)
                      ..+|+.||.|...-++.+=.--..-|=||--.+|+|.+.. ..+..+...|+     .|.+|...+     ..+.|  |+
T Consensus        91 rf~LrtGD~v~G~vR~Pke~Ery~aLl~ve~vN~~~pe~~~~R~~F~~LTPl-----yP~erl~LE~~~~~~~ls~--Rv  163 (422)
T COG1158          91 RFNLRTGDTVEGKVRPPKEGERYFALLKVEAVNGDDPEKAKNRVLFENLTPL-----YPNERLKLERENGSTDLST--RV  163 (422)
T ss_pred             hccCccCCEEeeeecCCCcccceeeeEEEeecCCCCHHHhhccCCcccCCCC-----CCcceeeeecCCCcccchh--HH
Confidence            4578999999877655554433445567777778777642 12233344544     344544332     32322  99


Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHhHhcCcc
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEMIESGVI  249 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l~~~gvl  249 (266)
                      ||++.|||||||.+|++|+.+|||+|+++|++..+.+|++ +.++.||+||++||+|+.+..+ ..|+
T Consensus       164 iDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~-geVi  230 (422)
T COG1158         164 IDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVK-GEVV  230 (422)
T ss_pred             HhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHhhc-ceEE
Confidence            9999999999999999999999999999999999999988 6777889999999999998886 4554

>TIGR00767 rho transcription termination factor Rho

Probab=99.54  E-value=1.7e-14  Score=138.73  Aligned_cols=132  Identities=18%  Similarity=0.173  Sum_probs=88.0

Q ss_pred             CCCCCCCCCEEEecCCCccccCChhhhhhhhcccCccccC-CCCCCCCCccccccCcccccccccc-cccccccceEeec
Q psy17544        108 GTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDE-RGPIDTDKSAAIHADAPEFVEMSVE-QEILVTGIKVVDL  185 (266)
Q Consensus       108 ~t~Gl~~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~-~~~~~~~~~~pI~~~~p~~~~R~~~-~e~l~TGIraID~  185 (266)
                      ...+|+.||.|...-++..-.---.-|=++-...|.+.+. .+.+..++..|+     .|.+|..+ ..+-..|+|+||+
T Consensus        87 ~~~~lr~gd~v~g~~R~~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~-----YP~er~~Le~~~~~~~~R~id~  161 (415)
T TIGR00767        87 RRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPL-----YPNERLRLETSTEDLSTRVLDL  161 (415)
T ss_pred             HhcCCCCCCEEEEEEeccccHhHHHHHhCCCccCCCCccccCCCeEEEEeeec-----CCCccceeecCccccceeeeee
Confidence            3568999999998654432110001111222223333221 112222223333     34455433 3566789999999


Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHhH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEMI  244 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l~  244 (266)
                      ++|||+|||++|+|++|+|||||+.++.++...+|.+ .++++++|||++|+.||++.+.
T Consensus       162 ~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIl  221 (415)
T TIGR00767       162 FAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVK  221 (415)
T ss_pred             EEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhh
Confidence            9999999999999999999999999998876544333 6789999999999999999984

Members of this family differ in the specificity of RNA binding.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.47  E-value=8.4e-14  Score=126.47  Aligned_cols=64  Identities=31%  Similarity=0.477  Sum_probs=55.8

Q ss_pred             ceEeecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHh
Q psy17544        180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEM  243 (266)
Q Consensus       180 IraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l  243 (266)
                      .|+||+|+||++|||++|||++|+|||||+.+++++....+.+ +++++++|||++|+.||++++
T Consensus         4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I   68 (249)
T cd01128           4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV   68 (249)
T ss_pred             hhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh
Confidence            4999999999999999999999999999999998865333334 456777999999999999998

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.80  E-value=1.4e-08  Score=74.08  Aligned_cols=66  Identities=39%  Similarity=0.497  Sum_probs=55.9

Q ss_pred             EEEEECcEEEEEec-CCCcccccEEEEecC--CCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecC
Q psy17544         56 VVAVIGAVVDVQFD-HDLPPILNALEVEGR--SPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSG  122 (266)
Q Consensus        56 V~~I~G~vV~v~~~-~~~p~ig~~~~v~~~--~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg  122 (266)
                      |++|.|+++++++. ..+|+++|.++++..  +..+.+||+++ +++.+++++|++++||++|++|++||
T Consensus         1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~Vv~~-~~~~v~~~~~~~t~Gl~~G~~V~~tG   69 (69)
T PF02874_consen    1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFGNGVLGEVVGL-DEDEVRLQVFGSTDGLSRGTEVRFTG   69 (69)
T ss_dssp             EEEEECTEEEEECSEEEEEETTTEEEEEEEEETTEEEEEEEEE-ETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred             CccccceEEEEEcCCCCCCCccEEEEEecccceeeeeeeeccc-CccEEEEEEecCCCCCCCCCEEEcCc
Confidence            68999999999765 446789999988732  35678898885 67899999999999999999999986

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.71  E-value=2.9e-05  Score=68.33  Aligned_cols=66  Identities=27%  Similarity=0.337  Sum_probs=50.1

Q ss_pred             ccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHH
Q psy17544        176 LVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH  241 (266)
Q Consensus       176 l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~  241 (266)
                      ..|||..+|-++  -+-+|.-+.|.|++|+|||+|+.+++.+.+++.+.-++|...-|..+++.+-.+
T Consensus         1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~   68 (226)
T PF06745_consen    1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMK   68 (226)
T ss_dssp             E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHH
T ss_pred             CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHH
Confidence            369999999999  688999999999999999999999887765542568889988777765555433

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.65  E-value=9.2e-05  Score=66.22  Aligned_cols=65  Identities=20%  Similarity=0.288  Sum_probs=53.6

Q ss_pred             cccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHH
Q psy17544        175 ILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY  240 (266)
Q Consensus       175 ~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~  240 (266)
                      .+.|||..+|-++.  +-+|.-+.|.|++|+|||+|+.+++.+.++ .+..++|...-|..+++.+..
T Consensus         2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~~~i~~~~   68 (237)
T TIGR03877         2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQVRRNM   68 (237)
T ss_pred             ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCHHHHHHHH
Confidence            36899999999875  779999999999999999999998876543 456899999888777655543

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.65  E-value=0.0001  Score=66.64  Aligned_cols=68  Identities=22%  Similarity=0.339  Sum_probs=60.5

Q ss_pred             ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHH
Q psy17544        174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE  242 (266)
Q Consensus       174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~  242 (266)
                      +.+.|||.-+|-++-  +-+|.-+.|.|++|+|||+++.+.+.+.++ ++.-++|...-|...|+.+-...
T Consensus         3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~~~~~   72 (260)
T COG0467           3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLENARS   72 (260)
T ss_pred             ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHHHHHHH
Confidence            457899999999999  789999999999999999999999998754 46789999999999998887763

>cd01394 radB RadB

Probab=97.65  E-value=7.7e-05  Score=65.23  Aligned_cols=51  Identities=29%  Similarity=0.417  Sum_probs=42.1

Q ss_pred             ccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544        176 LVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  227 (266)
Q Consensus       176 l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a  227 (266)
                      +.||+..+|-++.  +-+|.=+.|+|++|+|||+|+.+++.+.++. +.-++|.
T Consensus         1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi   53 (218)
T cd01394           1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYI   53 (218)
T ss_pred             CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence            4799999999996  7789999999999999999999999876543 3444454

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK04328 hypothetical protein; Provisional

Probab=97.54  E-value=0.00017  Score=65.19  Aligned_cols=64  Identities=22%  Similarity=0.284  Sum_probs=53.7

Q ss_pred             cccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHH
Q psy17544        175 ILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL  239 (266)
Q Consensus       175 ~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef  239 (266)
                      .+.|||.-+|-++.  +-+|.-+.|.|++|+|||+|+.+++.+.++ .+..++|...-|..+++.+.
T Consensus         4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~~~i~~~   69 (249)
T PRK04328          4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHPVQVRRN   69 (249)
T ss_pred             eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCHHHHHHH
Confidence            47899999999986  559999999999999999999998876543 35689999999988875554

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.51  E-value=0.00016  Score=63.69  Aligned_cols=41  Identities=39%  Similarity=0.491  Sum_probs=37.4

Q ss_pred             ccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        176 LVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       176 l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +.||++.+|-++.  +-+|.-+.|.|++|+|||+|+.+++.+.
T Consensus         1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~   43 (235)
T cd01123           1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV   43 (235)
T ss_pred             CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence            4799999999987  8899999999999999999999998753

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.46  E-value=0.00026  Score=62.29  Aligned_cols=60  Identities=22%  Similarity=0.352  Sum_probs=47.3

Q ss_pred             ccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHH
Q psy17544        176 LVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG  236 (266)
Q Consensus       176 l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv  236 (266)
                      +.|||..+|-++.  +-+|.-+.|.|++|+|||+|+.+++.+.++ .+.-++|....+..+++
T Consensus         2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~~~~i   63 (229)
T TIGR03881         2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEESRESI   63 (229)
T ss_pred             cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCCHHHH
Confidence            5799999999985  669999999999999999999998876543 34466777665555443

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.45  E-value=0.00023  Score=70.46  Aligned_cols=66  Identities=20%  Similarity=0.173  Sum_probs=54.2

Q ss_pred             cccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHH
Q psy17544        175 ILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY  240 (266)
Q Consensus       175 ~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~  240 (266)
                      .+.|||.-+|-++.  +-+|.-+.|-|++|+|||+|+.+++.+.++..+.-++|...-|+.++..+-.
T Consensus         2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~   69 (484)
T TIGR02655         2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNA   69 (484)
T ss_pred             cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHH
Confidence            47899999999986  7799999999999999999999988765544356788888888776654433

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.40  E-value=0.00033  Score=62.17  Aligned_cols=71  Identities=21%  Similarity=0.232  Sum_probs=56.5

Q ss_pred             cccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544        173 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG  247 (266)
Q Consensus       173 ~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g  247 (266)
                      .+.+.|||..+|-++.  +-+|.-+.|.|++|+|||+|+.+++.+.++ ++..++|...-|..   .++++.+.+.|
T Consensus         4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~~---~~~~~~~~~~g   76 (234)
T PRK06067          4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENTS---KSYLKQMESVK   76 (234)
T ss_pred             ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCCH---HHHHHHHHHCC
Confidence            3568999999999985  779999999999999999999999876544 45678888776554   45666666666

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=97.38  E-value=0.00056  Score=61.64  Aligned_cols=69  Identities=25%  Similarity=0.224  Sum_probs=52.8

Q ss_pred             cccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHH
Q psy17544        173 QEILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH  241 (266)
Q Consensus       173 ~e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~  241 (266)
                      ++-+.||+..+|-++- +.+|.-+.|.|++|+|||+|+.+++.+.+..++..++|.-.=+...+..+.+.
T Consensus        10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~   79 (271)
T cd01122          10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLL   79 (271)
T ss_pred             ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHH
Confidence            4567799999999753 77999999999999999999999998766553445666666566666655543

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.38  E-value=0.00032  Score=61.73  Aligned_cols=56  Identities=30%  Similarity=0.500  Sum_probs=46.2

Q ss_pred             cccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544        173 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV  229 (266)
Q Consensus       173 ~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI  229 (266)
                      ++.+.||+..+|-++.  +-+|.=+.|.|++|+|||+|+.+++.+.++. +..++|.-.
T Consensus         2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~   59 (225)
T PRK09361          2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDT   59 (225)
T ss_pred             CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEC
Confidence            5678999999999994  6789999999999999999999999877544 345566544

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.35  E-value=0.00046  Score=60.36  Aligned_cols=42  Identities=33%  Similarity=0.461  Sum_probs=38.1

Q ss_pred             ccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        176 LVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       176 l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      +.||+..+|-++.  +-+|+-..|+|++|+|||+|+.+++.+.+
T Consensus         1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~   44 (226)
T cd01393           1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQ   44 (226)
T ss_pred             CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence            5799999999985  88999999999999999999999998754

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.31  E-value=0.00036  Score=69.20  Aligned_cols=70  Identities=27%  Similarity=0.290  Sum_probs=58.6

Q ss_pred             ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHh
Q psy17544        174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM  243 (266)
Q Consensus       174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l  243 (266)
                      +.+.|||..+|-++-  +-+|+-+.|.|++|+|||+|+.+++.+.+..++.-++|...-|..+++.+-...|
T Consensus        11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~   82 (509)
T PRK09302         11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASF   82 (509)
T ss_pred             ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHc
Confidence            467899999999984  8899999999999999999999999876655466889999999887766655544

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.25  E-value=0.00069  Score=61.69  Aligned_cols=57  Identities=21%  Similarity=0.289  Sum_probs=45.4

Q ss_pred             ccccceEeeccc----------------ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCc
Q psy17544        176 LVTGIKVVDLLA----------------PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT  233 (266)
Q Consensus       176 l~TGIraID~L~----------------pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~  233 (266)
                      +.|||..+|-++                -+-+|.-+.|.|++|+|||+|+.+++.+.++. +.-++|...-|..
T Consensus         4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~~   76 (259)
T TIGR03878         4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESPA   76 (259)
T ss_pred             ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCc
Confidence            479999999997                35699999999999999999999998876553 4566666654444

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.03  E-value=0.0012  Score=65.48  Aligned_cols=72  Identities=21%  Similarity=0.355  Sum_probs=55.6

Q ss_pred             ccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544        172 EQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG  247 (266)
Q Consensus       172 ~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g  247 (266)
                      ..+.+.|||..+|-++.  +-+|.-+.|.|++|+|||+|+.+++.+.++ .+.-++|...-|..++   +++.+...|
T Consensus       251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~~~~---i~~~~~~~g  324 (509)
T PRK09302        251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR-RGERCLLFAFEESRAQ---LIRNARSWG  324 (509)
T ss_pred             ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCHHH---HHHHHHHcC
Confidence            46778999999999986  889999999999999999999999987544 3456777766666554   444444434

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.01  E-value=0.00057  Score=52.60  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=23.5

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +++.+.|+|++|+|||+++..+++..
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcc
Confidence            47899999999999999999998864

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02012 tigrfam_recA protein RecA

Probab=96.96  E-value=0.00076  Score=63.81  Aligned_cols=53  Identities=34%  Similarity=0.528  Sum_probs=43.7

Q ss_pred             ccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544        174 EILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  227 (266)
Q Consensus       174 e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a  227 (266)
                      +.+.||+..+|.++.   +-+|.=+.|+|++|+|||+|+.+++.+.++. +..++|.
T Consensus        34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yI   89 (321)
T TIGR02012        34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFI   89 (321)
T ss_pred             ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEE
Confidence            468899999999997   6699999999999999999999988876543 4455544

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.90  E-value=0.0008  Score=63.76  Aligned_cols=55  Identities=33%  Similarity=0.526  Sum_probs=44.7

Q ss_pred             cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544        173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  228 (266)
Q Consensus       173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al  228 (266)
                      .+.+.||+..+|.++.   +-+|-=+-|+|++|+|||+|+.+++.+.++. +..++|.-
T Consensus        33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId   90 (325)
T cd00983          33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFID   90 (325)
T ss_pred             CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEC
Confidence            4578999999999998   6678888999999999999999998875543 34555553

RecA couples ATP hydrolysis to DNA strand exchange.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.88  E-value=0.0051  Score=49.51  Aligned_cols=54  Identities=31%  Similarity=0.466  Sum_probs=40.9

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcc
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI  249 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl  249 (266)
                      +.|+|++|+|||+|+..++...+ .++..++|....+...+..+.+..+...+..
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~   55 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIA-TKGGKVVYVDIEEEIEELTERLIGESLKGAL   55 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHH-hcCCEEEEEECCcchHHHHHHHhhhhhcccc
Confidence            57999999999999999998654 3456788888888888877766555544433

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.88  E-value=0.0013  Score=61.01  Aligned_cols=69  Identities=26%  Similarity=0.305  Sum_probs=51.4

Q ss_pred             cccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhc-----CCcEEEEEeecC--CchHHHHHHH
Q psy17544        173 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGE--RTREGNDLYH  241 (266)
Q Consensus       173 ~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~-----~~~v~V~alIGE--R~rEv~ef~~  241 (266)
                      ...+.||++.+|.++-  +-+|.-+.|+|++|+|||+|+.+++.+.+..     .++.+||.-.-+  +.+...++.+
T Consensus        74 ~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~  151 (310)
T TIGR02236        74 IGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE  151 (310)
T ss_pred             CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence            3447799999999987  7789999999999999999999998874321     123688888777  3444444443

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PRK09354 recA recombinase A; Provisional

Probab=96.87  E-value=0.00092  Score=63.92  Aligned_cols=56  Identities=27%  Similarity=0.489  Sum_probs=45.0

Q ss_pred             cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544        173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV  229 (266)
Q Consensus       173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI  229 (266)
                      .+.+.||+..+|.++.   +-+|.=+-|+|++|+|||+|+.+++.+.++ .+..++|.-.
T Consensus        38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~   96 (349)
T PRK09354         38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDA   96 (349)
T ss_pred             CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECC
Confidence            4578899999999998   557888889999999999999999887544 3455655543

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.83  E-value=0.0024  Score=63.30  Aligned_cols=67  Identities=18%  Similarity=0.258  Sum_probs=55.6

Q ss_pred             cccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHH
Q psy17544        171 VEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND  238 (266)
Q Consensus       171 ~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~e  238 (266)
                      ...+.+.|||..+|-++-  +-+|.-+.|.|++|+|||+|+.+.+.+.++ ++..++|..-=|..++...
T Consensus       240 ~~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~i~~  308 (484)
T TIGR02655       240 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESRAQLLR  308 (484)
T ss_pred             ccccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHHHHH
Confidence            356779999999999985  789999999999999999999999987654 4568888887777655444

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.81  E-value=0.004  Score=55.76  Aligned_cols=63  Identities=16%  Similarity=0.097  Sum_probs=44.9

Q ss_pred             ccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHH
Q psy17544        176 LVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL  239 (266)
Q Consensus       176 l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef  239 (266)
                      +.+++.-+|-++.  +-+|..++|.|++|+|||+|+.+++.+.++ ++..++|...-|...+..+.
T Consensus         6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~~~~~~~~~   70 (230)
T PRK08533          6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQLTTTEFIKQ   70 (230)
T ss_pred             EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHH
Confidence            3456666666665  668999999999999999998777776543 33467777766665544333

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.76  E-value=0.001  Score=60.73  Aligned_cols=30  Identities=27%  Similarity=0.493  Sum_probs=26.5

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.|.+|++.||+|+||+|||||+..++-
T Consensus        26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          26 VSLEIERGETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             eeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence            347899999999999999999999987664

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=96.75  E-value=0.0025  Score=60.83  Aligned_cols=72  Identities=18%  Similarity=0.121  Sum_probs=53.4

Q ss_pred             cccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhc--C---CcEEEEEeecC--CchHHHHHHH
Q psy17544        171 VEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKA--H---GGYSVFAGVGE--RTREGNDLYH  241 (266)
Q Consensus       171 ~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~--~---~~v~V~alIGE--R~rEv~ef~~  241 (266)
                      .-...+.||++.+|-++-  +-.|.=.-|+|++|+|||+|+++++-+.+..  .   +..++|.-.-+  +.+.+.+..+
T Consensus       103 ~~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~  182 (344)
T PLN03187        103 KSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAE  182 (344)
T ss_pred             ccCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHH
Confidence            345679999999999987  6689999999999999999999998654321  1   13677777655  4555555544


Q ss_pred             H
Q psy17544        242 E  242 (266)
Q Consensus       242 ~  242 (266)
                      .
T Consensus       183 ~  183 (344)
T PLN03187        183 R  183 (344)
T ss_pred             H
Confidence            3

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.70  E-value=0.0038  Score=54.88  Aligned_cols=60  Identities=23%  Similarity=0.376  Sum_probs=45.8

Q ss_pred             cceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHH
Q psy17544        179 GIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL  239 (266)
Q Consensus       179 GIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef  239 (266)
                      ||..+|-++.  +-+|.-+.|.|++|+|||+++.+++.+.++. +.-++|.-.-|..+++.+-
T Consensus         1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~   62 (224)
T TIGR03880         1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGY   62 (224)
T ss_pred             CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHH
Confidence            5677788764  5589999999999999999999999875443 4577787777765544443

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.70  E-value=0.0029  Score=60.91  Aligned_cols=58  Identities=31%  Similarity=0.549  Sum_probs=46.1

Q ss_pred             cccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCC
Q psy17544        173 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER  232 (266)
Q Consensus       173 ~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER  232 (266)
                      .+.+.|||.-+|-++.  +.+|+=+.|.|++|+|||+|+.+++.+.++. +..++|. .||.
T Consensus        61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYv-s~EE  120 (372)
T cd01121          61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYV-SGEE  120 (372)
T ss_pred             cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEE-ECCc
Confidence            3468899999999985  8899999999999999999999999876543 2344444 3453

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR00416 sms DNA repair protein RadA

Probab=96.61  E-value=0.0028  Score=62.46  Aligned_cols=70  Identities=21%  Similarity=0.347  Sum_probs=51.3

Q ss_pred             ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544        174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG  247 (266)
Q Consensus       174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g  247 (266)
                      +.+.||+.-+|-++.  +.+|+-+.|.|++|+|||||+.+++.+.++. +.-++|. .||-..  .++.......|
T Consensus        74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYv-s~EEs~--~qi~~ra~rlg  145 (454)
T TIGR00416        74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYV-SGEESL--QQIKMRAIRLG  145 (454)
T ss_pred             CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEE-ECcCCH--HHHHHHHHHcC
Confidence            458899999999985  8899999999999999999999998876543 2345565 455332  23433444444

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.56  E-value=0.0025  Score=55.11  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=29.4

Q ss_pred             eEeecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        181 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       181 raID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+++-.+.+.+|..++|.|++|+|||||+..|+..
T Consensus        14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence            34554579999999999999999999999877653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PTZ00035 Rad51 protein; Provisional

Probab=96.55  E-value=0.0037  Score=59.38  Aligned_cols=49  Identities=29%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             ccccccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        168 EMSVEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       168 ~R~~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ++..-...+.||++.+|-++-  +-+|.-..|+|++|+|||+|+++++.+.
T Consensus        92 ~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~  142 (337)
T PTZ00035         92 EARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC  142 (337)
T ss_pred             HhhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence            333445679999999999985  7789999999999999999999998654

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.54  E-value=0.0019  Score=51.83  Aligned_cols=29  Identities=34%  Similarity=0.462  Sum_probs=25.4

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii  213 (266)
                      ..+.+..|+.++|.|+||+|||||+..+.
T Consensus         8 vsl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           8 VLVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             eEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            34578889999999999999999998775

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=96.49  E-value=0.0042  Score=58.45  Aligned_cols=73  Identities=16%  Similarity=0.126  Sum_probs=52.1

Q ss_pred             cccccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhc-----CCcEEEEEeecC--CchHHHHH
Q psy17544        169 MSVEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGE--RTREGNDL  239 (266)
Q Consensus       169 R~~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~-----~~~v~V~alIGE--R~rEv~ef  239 (266)
                      +..-...+.||++.+|-++-  +-+|.=.-|+|++|+|||+|+++++.+.+..     .+..++|.-.-+  +.+.+.+.
T Consensus        71 ~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~  150 (313)
T TIGR02238        71 KRKKVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAI  150 (313)
T ss_pred             hhccCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHH
Confidence            33334678999999999986  7799999999999999999999988653311     123667766544  24444444


Q ss_pred             HH
Q psy17544        240 YH  241 (266)
Q Consensus       240 ~~  241 (266)
                      .+
T Consensus       151 a~  152 (313)
T TIGR02238       151 AE  152 (313)
T ss_pred             HH
Confidence            33

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.48  E-value=0.0022  Score=58.61  Aligned_cols=34  Identities=26%  Similarity=0.535  Sum_probs=28.6

Q ss_pred             ceEe-ecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544        180 IKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       180 IraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii  213 (266)
                      ..++ |.=+.+.+|+-+.|.|+||||||||+..++
T Consensus        16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiA   50 (248)
T COG1116          16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA   50 (248)
T ss_pred             eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            4555 455789999999999999999999997554

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.48  E-value=0.0022  Score=54.91  Aligned_cols=29  Identities=28%  Similarity=0.521  Sum_probs=26.1

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      =+++.+|+.++|.|++|+|||||+..|+.
T Consensus        12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G   40 (190)
T TIGR01166        12 NFAAERGEVLALLGANGAGKSTLLLHLNG   40 (190)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            36789999999999999999999987765

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.47  E-value=0.0046  Score=60.82  Aligned_cols=71  Identities=24%  Similarity=0.439  Sum_probs=51.1

Q ss_pred             ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCc
Q psy17544        174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGV  248 (266)
Q Consensus       174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gv  248 (266)
                      +.+.||+.-+|-++.  +.+|+-+.|.|++|+|||+|+.+++.+.++. +..++|.- +|-..  .++.+...+.|.
T Consensus        60 ~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs-~Ees~--~qi~~ra~rlg~  132 (446)
T PRK11823         60 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVS-GEESA--SQIKLRAERLGL  132 (446)
T ss_pred             CcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-ccccH--HHHHHHHHHcCC
Confidence            358899999999985  7899999999999999999999999876533 33455554 44322  234444444443

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.44  E-value=0.0024  Score=55.85  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        23 ~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211        23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            34477899999999999999999999887653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.42  E-value=0.0026  Score=54.18  Aligned_cols=29  Identities=24%  Similarity=0.409  Sum_probs=26.3

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      =+++.+|+.++|.|++|+|||||+..|+.
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G   48 (178)
T cd03229          20 SLNIEAGEIVALLGPSGSGKSTLLRCIAG   48 (178)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            37788999999999999999999987765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.41  E-value=0.0025  Score=55.98  Aligned_cols=32  Identities=31%  Similarity=0.466  Sum_probs=27.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++.+||.++|+|++|+|||||+..|+..
T Consensus        21 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~   52 (229)
T cd03254          21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRF   52 (229)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34478999999999999999999999988753

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.39  E-value=0.0027  Score=55.79  Aligned_cols=32  Identities=31%  Similarity=0.415  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (227)
T cd03260          18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRL   49 (227)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            33468899999999999999999999877653

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.36  E-value=0.0028  Score=55.00  Aligned_cols=31  Identities=29%  Similarity=0.388  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G   49 (211)
T cd03225          19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNG   49 (211)
T ss_pred             ceEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3346788999999999999999999987765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.35  E-value=0.0029  Score=54.93  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++-+|+.++|.|++|+|||||+..|+..
T Consensus        19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34477889999999999999999999877653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.34  E-value=0.003  Score=54.85  Aligned_cols=31  Identities=35%  Similarity=0.556  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        18 ~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G   48 (210)
T cd03269          18 DISFSVEKGEIFGLLGPNGAGKTTTIRMILG   48 (210)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3446789999999999999999999987765

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.34  E-value=0.0039  Score=59.73  Aligned_cols=44  Identities=25%  Similarity=0.345  Sum_probs=35.6

Q ss_pred             ccccccccccceEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        170 SVEQEILVTGIKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       170 ~~~~e~l~TGIraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ..++.-+. +..++| .=+.|.+|.-+.+.||||||||||+.+|+-
T Consensus         9 ~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842           9 RNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             EeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence            34555555 567775 678999999999999999999999987764

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=96.33  E-value=0.0031  Score=54.62  Aligned_cols=32  Identities=28%  Similarity=0.521  Sum_probs=27.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++-+|+.++|.|++|+|||||+..|+..
T Consensus        23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~   54 (204)
T cd03250          23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGE   54 (204)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            44478899999999999999999999887764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.33  E-value=0.003  Score=55.04  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=26.9

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3367889999999999999999999877653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.32  E-value=0.0031  Score=55.93  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   50 (243)
T TIGR02315        20 NINLNINPGEFVAIIGPSGAGKSTLLRCINR   50 (243)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3347789999999999999999999987765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.32  E-value=0.0048  Score=57.01  Aligned_cols=48  Identities=29%  Similarity=0.546  Sum_probs=38.8

Q ss_pred             ceEee-cccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544        180 IKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  228 (266)
Q Consensus       180 IraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al  228 (266)
                      ++|+| .=+.+-+|..+||+|.||+|||||...+++ .-+...+-+.|-+
T Consensus        26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~-L~~pt~G~i~f~g   74 (268)
T COG4608          26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG-LEEPTSGEILFEG   74 (268)
T ss_pred             eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHc-CcCCCCceEEEcC
Confidence            57776 668999999999999999999999998877 3344445667764

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.31  E-value=0.0032  Score=54.63  Aligned_cols=32  Identities=22%  Similarity=0.276  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus        18 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03262          18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL   49 (213)
T ss_pred             CceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            33467889999999999999999999877653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=96.31  E-value=0.0061  Score=56.91  Aligned_cols=58  Identities=26%  Similarity=0.307  Sum_probs=46.1

Q ss_pred             ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhc-----CCcEEEEEeecC
Q psy17544        174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGE  231 (266)
Q Consensus       174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~-----~~~v~V~alIGE  231 (266)
                      ..+.||+..+|-++.  +-+|.-+.|+|++|+|||+|+.+++.+.+..     .+..++|.-.-+
T Consensus        82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~  146 (317)
T PRK04301         82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG  146 (317)
T ss_pred             CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence            457899999999876  7789999999999999999999999764321     123677777665

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.31  E-value=0.0032  Score=55.28  Aligned_cols=30  Identities=23%  Similarity=0.315  Sum_probs=26.7

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -+.+-+|.++.|.||||+|||||+.+++.=
T Consensus        23 sl~v~~Ge~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          23 SLSVRAGEFIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             eeeecCCceEEEeCCCCccHHHHHHHHHhc
Confidence            356889999999999999999999988763

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.30  E-value=0.0032  Score=55.10  Aligned_cols=31  Identities=32%  Similarity=0.450  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   48 (220)
T cd03265          18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT   48 (220)
T ss_pred             ceeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4557889999999999999999999987764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.30  E-value=0.0031  Score=55.09  Aligned_cols=31  Identities=26%  Similarity=0.514  Sum_probs=26.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (222)
T cd03224          18 GVSLTVPEGEIVALLGRNGAGKTTLLKTIMG   48 (222)
T ss_pred             eeeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence            3346889999999999999999999987765

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.29  E-value=0.0033  Score=54.85  Aligned_cols=31  Identities=26%  Similarity=0.433  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   51 (216)
T TIGR00960        21 NLNFHITKGEMVFLVGHSGAGKSTFLKLILG   51 (216)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3447789999999999999999999987765

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.29  E-value=0.0032  Score=54.35  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        16 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   46 (206)
T TIGR03608        16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIGL   46 (206)
T ss_pred             ceEEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4446788999999999999999999987765

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.29  E-value=0.0032  Score=55.51  Aligned_cols=30  Identities=30%  Similarity=0.445  Sum_probs=26.9

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =+++.+|+.++|.|++|+|||||+..|+..
T Consensus        25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   54 (233)
T cd03258          25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGL   54 (233)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            377899999999999999999999987653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=96.29  E-value=0.0053  Score=55.33  Aligned_cols=58  Identities=28%  Similarity=0.322  Sum_probs=42.3

Q ss_pred             ccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCch
Q psy17544        176 LVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR  234 (266)
Q Consensus       176 l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~r  234 (266)
                      +.||++.+|-++ -+.+|+=.-|-|.+|+|||+++.+++.+.+..++ ..|+-..-|=..
T Consensus         2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~SlEm~~   60 (259)
T PF03796_consen    2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSLEMSE   60 (259)
T ss_dssp             B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEESSS-H
T ss_pred             CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcCCCCH
Confidence            579999999886 5788889999999999999999999998776533 444444444333

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.27  E-value=0.0031  Score=55.67  Aligned_cols=29  Identities=31%  Similarity=0.368  Sum_probs=26.3

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      =+++.+|+.++|.|++|+|||||+..|+.
T Consensus        20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (236)
T cd03219          20 SFSVRPGEIHGLIGPNGAGKTTLFNLISG   48 (236)
T ss_pred             eEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence            46789999999999999999999997765

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.26  E-value=0.0034  Score=55.30  Aligned_cols=31  Identities=32%  Similarity=0.491  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (230)
T TIGR03410        18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG   48 (230)
T ss_pred             ceeeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4557899999999999999999999987765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.26  E-value=0.0035  Score=55.43  Aligned_cols=31  Identities=26%  Similarity=0.358  Sum_probs=27.2

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (241)
T cd03256          20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGL   50 (241)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468899999999999999999999988753

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.23  E-value=0.0036  Score=54.74  Aligned_cols=32  Identities=31%  Similarity=0.546  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   54 (228)
T cd03257          23 DVSFSIKKGETLGLVGESGSGKSTLARAILGL   54 (228)
T ss_pred             CceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            33467889999999999999999999877653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.23  E-value=0.0037  Score=54.15  Aligned_cols=30  Identities=37%  Similarity=0.382  Sum_probs=26.3

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (205)
T cd03226          19 LSLDLYAGEIIALTGKNGAGKTTLAKILAG   48 (205)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            336788999999999999999999987765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.23  E-value=0.0038  Score=54.00  Aligned_cols=31  Identities=29%  Similarity=0.453  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G   49 (200)
T PRK13540         19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAG   49 (200)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4447788999999999999999999987665

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.23  E-value=0.0036  Score=54.09  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=26.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii  213 (266)
                      |.=+++.+|++++|.|++|+|||||+..+.
T Consensus        13 ~isl~i~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            334689999999999999999999998664

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.23  E-value=0.0038  Score=55.49  Aligned_cols=31  Identities=29%  Similarity=0.447  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (242)
T PRK11124         20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNL   50 (242)
T ss_pred             eeeeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3347889999999999999999999987764

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.22  E-value=0.0037  Score=55.49  Aligned_cols=32  Identities=28%  Similarity=0.430  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++.+|+.++|+|++|+|||||+..|+..
T Consensus        20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (239)
T cd03296          20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGL   51 (239)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44478899999999999999999999887653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=96.21  E-value=0.0038  Score=55.56  Aligned_cols=30  Identities=33%  Similarity=0.371  Sum_probs=26.6

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (242)
T cd03295          20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINR   49 (242)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            347788999999999999999999987764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.21  E-value=0.0039  Score=55.68  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus        21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14247         21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNRL   52 (250)
T ss_pred             cceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            44477889999999999999999999877653

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.20  E-value=0.0039  Score=54.21  Aligned_cols=30  Identities=30%  Similarity=0.452  Sum_probs=26.6

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (213)
T cd03259          19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAG   48 (213)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            346789999999999999999999987765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.19  E-value=0.004  Score=55.11  Aligned_cols=31  Identities=19%  Similarity=0.425  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (235)
T cd03261          18 GVDLDVRRGEILAIIGPSGSGKSTLLRLIVG   48 (235)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4446899999999999999999999987765

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.18  E-value=0.004  Score=55.17  Aligned_cols=30  Identities=27%  Similarity=0.385  Sum_probs=26.5

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (236)
T TIGR03864        20 VSFTVRPGEFVALLGPNGAGKSTLFSLLTR   49 (236)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            346788999999999999999999987764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.18  E-value=0.0041  Score=54.74  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=26.3

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      =+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (232)
T cd03218          20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVG   48 (232)
T ss_pred             eeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence            37889999999999999999999987765

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.18  E-value=0.0041  Score=52.42  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=26.7

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   49 (163)
T cd03216          20 SLSVRRGEVHALLGENGAGKSTLMKILSGL   49 (163)
T ss_pred             EEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            377889999999999999999999877653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR00665 DnaB replicative DNA helicase

Probab=96.18  E-value=0.008  Score=58.28  Aligned_cols=64  Identities=20%  Similarity=0.213  Sum_probs=49.1

Q ss_pred             ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHH
Q psy17544        174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN  237 (266)
Q Consensus       174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~  237 (266)
                      .-+.||+..+|-++- +-+|+=+.|-|.+|+|||+++.+++.+.+..++.-+.|.-.-+...|+.
T Consensus       176 ~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~  240 (434)
T TIGR00665       176 TGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA  240 (434)
T ss_pred             CcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence            458899999999874 8899999999999999999999999887654433344555554555543

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.17  E-value=0.004  Score=55.67  Aligned_cols=31  Identities=23%  Similarity=0.411  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        22 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   52 (253)
T PRK14267         22 GVDLKIPQNGVFALMGPSGCGKSTLLRTFNR   52 (253)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3447899999999999999999999987765

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.17  E-value=0.004  Score=55.66  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+++.+|+.++|+|++|+|||||+..|+.
T Consensus        23 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   53 (252)
T PRK14255         23 GIDLDFNQNEITALIGPSGCGKSTYLRTLNR   53 (252)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3346789999999999999999999987764

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.17  E-value=0.0041  Score=52.67  Aligned_cols=30  Identities=37%  Similarity=0.566  Sum_probs=26.4

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G   48 (173)
T cd03230          19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILG   48 (173)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            346788999999999999999999987765

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.17  E-value=0.0038  Score=54.30  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=26.4

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   47 (213)
T cd03235          18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILG   47 (213)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            336789999999999999999999987765

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.17  E-value=0.0038  Score=54.64  Aligned_cols=30  Identities=23%  Similarity=0.434  Sum_probs=26.5

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G   52 (220)
T cd03293          23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAG   52 (220)
T ss_pred             eeEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence            346789999999999999999999987765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.16  E-value=0.0042  Score=54.15  Aligned_cols=32  Identities=31%  Similarity=0.343  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (207)
T PRK13539         20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL   51 (207)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34468899999999999999999999877653

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.15  E-value=0.0043  Score=54.91  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (243)
T TIGR01978        18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG   48 (243)
T ss_pred             ccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4447789999999999999999999987765

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.15  E-value=0.0042  Score=53.94  Aligned_cols=33  Identities=21%  Similarity=0.390  Sum_probs=29.1

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +|.=+.+.+|++++|+|++|+|||||+..|+.-
T Consensus        15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl   47 (211)
T cd03298          15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF   47 (211)
T ss_pred             cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            377788999999999999999999999877653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.15  E-value=0.0043  Score=54.68  Aligned_cols=31  Identities=26%  Similarity=0.452  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        20 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (234)
T cd03251          20 DISLDIPAGETVALVGPSGSGKSTLVNLIPR   50 (234)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3446788999999999999999999987765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.15  E-value=0.0042  Score=54.14  Aligned_cols=31  Identities=29%  Similarity=0.363  Sum_probs=26.9

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .=+.+-+|+.++|.|++|+|||||+..|+.-
T Consensus        24 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (218)
T cd03266          24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL   54 (218)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3467889999999999999999999877653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=96.14  E-value=0.01  Score=52.33  Aligned_cols=50  Identities=20%  Similarity=0.281  Sum_probs=40.1

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND  238 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~e  238 (266)
                      +.+|+=+.|-|++|+|||+|+.+++.+.+..++.-++|.-.-+..+|+.+
T Consensus        10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~   59 (242)
T cd00984          10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ   59 (242)
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence            67999999999999999999999998877654456667766666666555

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.14  E-value=0.0035  Score=50.31  Aligned_cols=29  Identities=24%  Similarity=0.397  Sum_probs=25.5

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+-+|+.++|.|++|+|||||+..|+..
T Consensus         6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen    6 LEIKPGEIVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEcCCCEEEEEccCCCccccceeeeccc
Confidence            56789999999999999999999877653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.13  E-value=0.0043  Score=55.81  Aligned_cols=31  Identities=19%  Similarity=0.327  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        30 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   60 (259)
T PRK14274         30 NINLSIPENEVTAIIGPSGCGKSTFIKTLNL   60 (259)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3347788999999999999999999997765

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.12  E-value=0.0046  Score=53.77  Aligned_cols=30  Identities=33%  Similarity=0.363  Sum_probs=26.3

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~G   50 (214)
T TIGR02673        21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYG   50 (214)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            346789999999999999999999987654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=96.11  E-value=0.0044  Score=54.81  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (237)
T cd03252          20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF   51 (237)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            44567889999999999999999999877753

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=96.11  E-value=0.0045  Score=55.27  Aligned_cols=31  Identities=19%  Similarity=0.324  Sum_probs=27.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+++-+|+.++|+|++|+|||||+..|+.
T Consensus        21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14240         21 KINLDIEENQVTALIGPSGCGKSTFLRTLNR   51 (250)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            5567899999999999999999999987764

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.10  E-value=0.0045  Score=52.87  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+..+|.|++|+|||||+..|+..
T Consensus        18 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~   49 (182)
T cd03215          18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGL   49 (182)
T ss_pred             ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            34477889999999999999999999877753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.10  E-value=0.0047  Score=53.66  Aligned_cols=32  Identities=31%  Similarity=0.381  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        18 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03301          18 DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL   49 (213)
T ss_pred             ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            33467889999999999999999999877653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.09  E-value=0.0081  Score=54.84  Aligned_cols=66  Identities=21%  Similarity=0.385  Sum_probs=45.5

Q ss_pred             ccccceEe-ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe---ecCCchHHHHHHHH
Q psy17544        176 LVTGIKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG---VGERTREGNDLYHE  242 (266)
Q Consensus       176 l~TGIraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al---IGER~rEv~ef~~~  242 (266)
                      +.-|.+++ |.=+.|-+|+.+.|+|+||+|||||+..|.. ..+...+-+.+-.   ++-+++|.+.+...
T Consensus        13 yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng-l~d~t~G~i~~~g~~i~~~~~k~lr~~r~~   82 (258)
T COG3638          13 YPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVDPTSGEILFNGVQITKLKGKELRKLRRD   82 (258)
T ss_pred             cCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc-ccCCCcceEEecccchhccchHHHHHHHHh
Confidence            33555555 3446789999999999999999999998865 3232223344444   67777777776654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=96.09  E-value=0.0046  Score=53.95  Aligned_cols=30  Identities=27%  Similarity=0.469  Sum_probs=26.5

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G   52 (220)
T cd03245          23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLAG   52 (220)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            346789999999999999999999987765

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.08  E-value=0.0048  Score=53.18  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=28.6

Q ss_pred             EeecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..|.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus        16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541         16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3454467889999999999999999999887663

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=96.08  E-value=0.0048  Score=53.49  Aligned_cols=32  Identities=31%  Similarity=0.358  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|++++|+|++|+|||||+..|+..
T Consensus        18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (201)
T cd03231          18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGL   49 (201)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44477889999999999999999999877653

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.08  E-value=0.0049  Score=54.71  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=27.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (240)
T PRK09493         19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL   50 (240)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            44578899999999999999999999877753

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.07  E-value=0.0051  Score=52.26  Aligned_cols=32  Identities=34%  Similarity=0.580  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~   51 (178)
T cd03247          20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            44567889999999999999999999988764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.07  E-value=0.0049  Score=55.69  Aligned_cols=31  Identities=26%  Similarity=0.428  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (255)
T PRK11248         19 DINLTLESGELLVVLGPSGCGKTTLLNLIAG   49 (255)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3446789999999999999999999987765

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=96.06  E-value=0.0047  Score=55.53  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=28.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (258)
T PRK11701         24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSAR   55 (258)
T ss_pred             eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45578999999999999999999999877653

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.06  E-value=0.0051  Score=54.61  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++.+|+.++|+|++|+|||||+..|+..
T Consensus        21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   52 (241)
T PRK10895         21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI   52 (241)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            44478899999999999999999999877653

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.06  E-value=0.0046  Score=55.99  Aligned_cols=31  Identities=32%  Similarity=0.484  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   59 (265)
T PRK10575         29 PLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR   59 (265)
T ss_pred             eeeeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            3447789999999999999999999987765

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.06  E-value=0.005  Score=54.89  Aligned_cols=31  Identities=26%  Similarity=0.465  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   51 (241)
T PRK14250         21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINR   51 (241)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4557889999999999999999999987765

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.06  E-value=0.0051  Score=54.85  Aligned_cols=31  Identities=23%  Similarity=0.321  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   51 (250)
T PRK11264         21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINL   51 (250)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3447789999999999999999999987764

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.05  E-value=0.0059  Score=47.90  Aligned_cols=22  Identities=36%  Similarity=0.453  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +++|.|.+|+||||++.+++..
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999875

...

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.04  E-value=0.0051  Score=53.85  Aligned_cols=31  Identities=29%  Similarity=0.317  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|+.
T Consensus        29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   59 (214)
T PRK13543         29 PLDFHVDAGEALLVQGDNGAGKTTLLRVLAG   59 (214)
T ss_pred             cceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence            4447789999999999999999999987765

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.03  E-value=0.0049  Score=54.52  Aligned_cols=32  Identities=25%  Similarity=0.401  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus        21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   52 (238)
T cd03249          21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERF   52 (238)
T ss_pred             ceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence            34568899999999999999999999877753

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.03  E-value=0.0056  Score=51.72  Aligned_cols=32  Identities=28%  Similarity=0.391  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|++.+|.|++|+|||||+..|+..
T Consensus        19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (166)
T cd03223          19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGL   50 (166)
T ss_pred             cCeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            44477889999999999999999999877653

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=96.02  E-value=0.0058  Score=55.55  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=27.6

Q ss_pred             EeecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +++.+..+.+|++++|.|++|+|||||+..|+.-
T Consensus        16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl   49 (255)
T cd03236          16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILAGK   49 (255)
T ss_pred             hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3444444889999999999999999999877654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.01  E-value=0.0054  Score=54.24  Aligned_cols=31  Identities=23%  Similarity=0.419  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        27 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   57 (233)
T PRK11629         27 NVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG   57 (233)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3346889999999999999999999987765

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.01  E-value=0.0054  Score=53.92  Aligned_cols=31  Identities=29%  Similarity=0.469  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        28 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   58 (228)
T PRK10584         28 GVELVVKRGETIALIGESGSGKSTLLAILAG   58 (228)
T ss_pred             ccEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            3447788999999999999999999987765

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=96.01  E-value=0.0054  Score=53.63  Aligned_cols=28  Identities=21%  Similarity=0.459  Sum_probs=25.6

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.+.+|+.++|+|++|+|||||+..|+.
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   49 (218)
T cd03290          22 IRIPTGQLTMIVGQVGCGKSSLLLAILG   49 (218)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            5788999999999999999999987765

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.00  E-value=0.0056  Score=52.15  Aligned_cols=31  Identities=32%  Similarity=0.587  Sum_probs=26.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|..
T Consensus        17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G   47 (180)
T cd03214          17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAG   47 (180)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4446688999999999999999999987765

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.00  E-value=0.0055  Score=53.49  Aligned_cols=31  Identities=39%  Similarity=0.512  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (220)
T cd03263          20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG   50 (220)
T ss_pred             ceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3446788999999999999999999987765

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.99  E-value=0.0056  Score=54.84  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=27.0

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus        26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (254)
T PRK14273         26 INIKILKNSITALIGPSGCGKSTFLRTLNRM   56 (254)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3367899999999999999999999887653

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=95.98  E-value=0.0056  Score=54.77  Aligned_cols=31  Identities=32%  Similarity=0.527  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+++-+|+.++|.|++|+|||||+..|+.
T Consensus        18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (252)
T TIGR03005        18 GLNFSVAAGEKVALIGPSGSGKSTILRILMT   48 (252)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4447889999999999999999999987765

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=95.97  E-value=0.0057  Score=54.26  Aligned_cols=31  Identities=23%  Similarity=0.269  Sum_probs=27.1

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   51 (242)
T TIGR03411        21 LSLYVDPGELRVIIGPNGAGKTTMMDVITGK   51 (242)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999999877753

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.97  E-value=0.0062  Score=51.55  Aligned_cols=30  Identities=20%  Similarity=0.361  Sum_probs=26.5

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~   51 (173)
T cd03246          22 SFSIEPGESLAIIGPSGSGKSTLARLILGL   51 (173)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            367889999999999999999999877753

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=95.97  E-value=0.0056  Score=55.04  Aligned_cols=31  Identities=19%  Similarity=0.313  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~laG   52 (258)
T PRK14241         22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNR   52 (258)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3347788999999999999999999987765

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.96  E-value=0.0059  Score=52.92  Aligned_cols=32  Identities=28%  Similarity=0.441  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        18 ~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl   49 (208)
T cd03268          18 DISLHVKKGEIYGFLGPNGAGKTTTMKIILGL   49 (208)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            34467889999999999999999999987653

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=95.96  E-value=0.0057  Score=54.08  Aligned_cols=31  Identities=23%  Similarity=0.463  Sum_probs=27.0

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus         5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   35 (230)
T TIGR02770         5 LNLSLKRGEVLALVGESGSGKSLTCLAILGL   35 (230)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3467889999999999999999999988764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=95.96  E-value=0.0057  Score=57.55  Aligned_cols=36  Identities=28%  Similarity=0.495  Sum_probs=29.9

Q ss_pred             ceEeecc-cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        180 IKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       180 IraID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+++|.+ +.+.+|+.++|+|++|+|||||+..|+.-
T Consensus        20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl   56 (330)
T PRK15093         20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV   56 (330)
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence            3456444 68999999999999999999999887653

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=95.96  E-value=0.0057  Score=54.69  Aligned_cols=30  Identities=20%  Similarity=0.377  Sum_probs=26.6

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14242         25 ISLEFEQNQVTALIGPSGCGKSTFLRCLNR   54 (253)
T ss_pred             eeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence            336789999999999999999999998875

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.95  E-value=0.0057  Score=54.68  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus        21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   52 (253)
T TIGR02323        21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR   52 (253)
T ss_pred             cceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            44477889999999999999999999877653

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=95.95  E-value=0.018  Score=48.38  Aligned_cols=46  Identities=22%  Similarity=0.292  Sum_probs=34.8

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH  241 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~  241 (266)
                      +.|.|++|+|||+|+.+++.+.++. +.-++|...-|..+++.+..+
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~~~~   47 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIENAE   47 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHHHHH
Confidence            4689999999999999999876543 456777777777776655443

A related protein is found in archaea.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=95.94  E-value=0.0059  Score=56.52  Aligned_cols=30  Identities=30%  Similarity=0.420  Sum_probs=26.8

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~G   41 (302)
T TIGR01188        12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTT   41 (302)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            346889999999999999999999987765

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=95.94  E-value=0.006  Score=53.53  Aligned_cols=29  Identities=28%  Similarity=0.357  Sum_probs=26.0

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+.+|+.++|.|++|+|||||+..|+..
T Consensus        35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   63 (226)
T cd03248          35 FTLHPGEVTALVGPSGSGKSTVVALLENF   63 (226)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            67889999999999999999999877653

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=95.94  E-value=0.0069  Score=57.53  Aligned_cols=32  Identities=28%  Similarity=0.465  Sum_probs=29.0

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaG   46 (352)
T PRK11144         15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISG   46 (352)
T ss_pred             EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            47778899999999999999999999987765

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=95.93  E-value=0.0058  Score=55.34  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|++++|+|++|+|||||+..|+..
T Consensus        25 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   56 (265)
T PRK10253         25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL   56 (265)
T ss_pred             ecceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            34478889999999999999999999877653

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.93  E-value=0.0063  Score=54.33  Aligned_cols=31  Identities=23%  Similarity=0.358  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        21 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14262         21 NVTMKIFKNQITAIIGPSGCGKTTLLRSINR   51 (250)
T ss_pred             eeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3447788999999999999999999987764

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.93  E-value=0.0063  Score=53.53  Aligned_cols=32  Identities=25%  Similarity=0.226  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus         5 ~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl   36 (213)
T PRK15177          5 KTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL   36 (213)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            33467899999999999999999999887753

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=95.93  E-value=0.0059  Score=53.95  Aligned_cols=31  Identities=19%  Similarity=0.468  Sum_probs=27.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   47 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIAG   47 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            6668899999999999999999999987765

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.93  E-value=0.006  Score=55.25  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=26.5

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        40 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   69 (268)
T PRK14248         40 ISMDIEKHAVTALIGPSGCGKSTFLRSINR   69 (268)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            346788999999999999999999987765

>PRK10908 cell division protein FtsE; Provisional

Probab=95.93  E-value=0.0064  Score=53.30  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=26.6

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (222)
T PRK10908         21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICG   50 (222)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            336788999999999999999999987765

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=95.93  E-value=0.0061  Score=55.40  Aligned_cols=31  Identities=26%  Similarity=0.389  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G   60 (257)
T PRK11247         30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG   60 (257)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4446789999999999999999999987765

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=95.92  E-value=0.006  Score=55.48  Aligned_cols=31  Identities=29%  Similarity=0.393  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (272)
T PRK15056         25 DASFTVPGGSIAALVGVNGSGKSTLFKALMG   55 (272)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4557899999999999999999999987764

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=95.92  E-value=0.0062  Score=53.42  Aligned_cols=29  Identities=28%  Similarity=0.448  Sum_probs=25.8

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      =+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (223)
T TIGR03740        20 SLTVPKNSVYGLLGPNGAGKSTLLKMITG   48 (223)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            36788999999999999999999987764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=95.92  E-value=0.0063  Score=54.31  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (247)
T TIGR00972        19 NINLDIPKNQVTALIGPSGCGKSTLLRSLNR   49 (247)
T ss_pred             ceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4447788999999999999999999987765

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=95.92  E-value=0.0069  Score=53.44  Aligned_cols=29  Identities=34%  Similarity=0.585  Sum_probs=25.5

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+-+|+.++|+|++|+|||||+..|+..
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   29 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGL   29 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            35779999999999999999999887753

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=95.92  E-value=0.0067  Score=52.65  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             ccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            44568999999999999999999999877653

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=95.90  E-value=0.0075  Score=56.09  Aligned_cols=57  Identities=28%  Similarity=0.445  Sum_probs=44.9

Q ss_pred             cccccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEE
Q psy17544        169 MSVEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF  226 (266)
Q Consensus       169 R~~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~  226 (266)
                      +....+.+.||.+.+|.++.  +-+|.-.-|||+.|+|||+|+++++.+..+ .++.++|
T Consensus        35 ~~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~-~g~~a~f   93 (279)
T COG0468          35 RREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQK-PGGKAAF   93 (279)
T ss_pred             HhhccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhc-CCCeEEE
Confidence            33447889999999999998  337888899999999999999999987543 3444443

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=95.90  E-value=0.0065  Score=53.24  Aligned_cols=32  Identities=28%  Similarity=0.452  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   57 (224)
T TIGR02324        26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYAN   57 (224)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34478899999999999999999999877653

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=95.90  E-value=0.006  Score=58.14  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=28.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        20 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl   51 (353)
T PRK10851         20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGL   51 (353)
T ss_pred             EeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45578899999999999999999999877753

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=95.90  E-value=0.0064  Score=53.92  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=26.2

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =+.+.+|+.++|.|++|+|||||+..|+..
T Consensus         5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   34 (230)
T TIGR01184         5 NLTIQQGEFISLIGHSGCGKSTLLNLISGL   34 (230)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            357889999999999999999999877653

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.90  E-value=0.0065  Score=53.59  Aligned_cols=31  Identities=19%  Similarity=0.272  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   55 (225)
T PRK10247         25 NISFSLRAGEFKLITGPSGCGKSTLLKIVAS   55 (225)
T ss_pred             ccEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4447788999999999999999999987765

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=95.90  E-value=0.0064  Score=54.26  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        23 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (252)
T PRK14239         23 SVSLDFYPNEITALIGPSGSGKSTLLRSINR   53 (252)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4447788999999999999999999988764

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=95.90  E-value=0.012  Score=56.18  Aligned_cols=70  Identities=17%  Similarity=0.213  Sum_probs=51.2

Q ss_pred             cccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhc-----CCcEEEEEeecC--CchHHHHHHHH
Q psy17544        173 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGE--RTREGNDLYHE  242 (266)
Q Consensus       173 ~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~-----~~~v~V~alIGE--R~rEv~ef~~~  242 (266)
                      ...+.||++.+|-++.  +-+|.=+-|+|++|+|||+|+.+++.+.+..     .++.++|.-.-+  +.+...++.+.
T Consensus       102 ~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~  180 (342)
T PLN03186        102 IIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAER  180 (342)
T ss_pred             cceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHH
Confidence            4568999999999877  6688999999999999999999998764311     112567766655  44445555443

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.88  E-value=0.0067  Score=52.64  Aligned_cols=32  Identities=28%  Similarity=0.309  Sum_probs=27.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (204)
T PRK13538         19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGL   50 (204)
T ss_pred             cceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            55577899999999999999999999877653

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=95.88  E-value=0.0066  Score=53.98  Aligned_cols=29  Identities=24%  Similarity=0.425  Sum_probs=26.1

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+.+|+.++|.|++|+|||||+..|+..
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   49 (237)
T TIGR00968        21 LEVPTGSLVALLGPSGSGKSTLLRIIAGL   49 (237)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            67999999999999999999999877653

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=95.87  E-value=0.0064  Score=57.94  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        24 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG   54 (351)
T PRK11432         24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG   54 (351)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence            3557889999999999999999999987764

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=95.87  E-value=0.0068  Score=55.01  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=27.2

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        39 vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl   69 (267)
T PRK14237         39 IDMQFEKNKITALIGPSGSGKSTYLRSLNRM   69 (267)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4478889999999999999999999977653

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=95.87  E-value=0.026  Score=48.81  Aligned_cols=42  Identities=29%  Similarity=0.430  Sum_probs=33.5

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecC
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE  231 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGE  231 (266)
                      +-+|+=+.|+|++|+|||+|+.+++.+.++. +.-++|.-.-+
T Consensus         9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~   50 (209)
T TIGR02237         9 VERGTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEG   50 (209)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence            5689999999999999999999999876543 45666666643

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=95.86  E-value=0.0065  Score=55.18  Aligned_cols=31  Identities=23%  Similarity=0.437  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   55 (269)
T PRK11831         25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGG   55 (269)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4558899999999999999999999987765

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=95.85  E-value=0.0068  Score=54.86  Aligned_cols=31  Identities=29%  Similarity=0.578  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   59 (265)
T TIGR02769        29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLG   59 (265)
T ss_pred             CceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            5557899999999999999999999987765

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.85  E-value=0.0085  Score=56.56  Aligned_cols=36  Identities=33%  Similarity=0.552  Sum_probs=32.0

Q ss_pred             ceEeecc-cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        180 IKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       180 IraID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++++|.+ +.+.+|+.+||.|.||+|||+++..+..-
T Consensus        18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~l   54 (316)
T COG0444          18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL   54 (316)
T ss_pred             EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc
Confidence            6788655 78999999999999999999999988873

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=95.85  E-value=0.0067  Score=53.96  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus        39 ~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl   70 (236)
T cd03267          39 GISFTIEKGEIVGFIGPNGAGKTTTLKILSGL   70 (236)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34467889999999999999999999987753

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.85  E-value=0.0069  Score=54.96  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=27.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus        27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl   58 (269)
T PRK13648         27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI   58 (269)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            44578889999999999999999999877653

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=95.84  E-value=0.0054  Score=60.70  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=28.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+.+-+|++++|.|++|+|||||+.-+.+-.
T Consensus       353 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       353 GVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            445789999999999999999999998887643

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=95.84  E-value=0.0067  Score=57.90  Aligned_cols=31  Identities=29%  Similarity=0.373  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaG   52 (356)
T PRK11650         22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAG   52 (356)
T ss_pred             eeeEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence            4558899999999999999999999987765

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=95.84  E-value=0.0072  Score=54.74  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        28 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   58 (264)
T PRK14243         28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNR   58 (264)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3447788999999999999999999998774

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=95.84  E-value=0.0069  Score=54.70  Aligned_cols=30  Identities=23%  Similarity=0.449  Sum_probs=26.5

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        21 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   50 (258)
T PRK13548         21 VSLTLRPGEVVAILGPNGAGKSTLLRALSG   50 (258)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            336788999999999999999999987765

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=95.83  E-value=0.0068  Score=56.14  Aligned_cols=31  Identities=35%  Similarity=0.577  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+++-+|+.++|.|++|+|||||+..|+.
T Consensus        22 ~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~G   52 (303)
T TIGR01288        22 DLSFTIARGECFGLLGPNGAGKSTIARMLLG   52 (303)
T ss_pred             ceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3447899999999999999999999987765

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.83  E-value=0.0063  Score=55.72  Aligned_cols=44  Identities=18%  Similarity=0.374  Sum_probs=33.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  227 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a  227 (266)
                      |.=+.+-||+-.+|.||||+|||||+..|+--..-.++.+-+++
T Consensus        26 ~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G   69 (263)
T COG1127          26 GVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG   69 (263)
T ss_pred             CceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcC
Confidence            44577899999999999999999999877753323344466654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=95.83  E-value=0.0068  Score=57.76  Aligned_cols=32  Identities=31%  Similarity=0.446  Sum_probs=27.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+..|+.++|+|++|+|||||+..|+-.
T Consensus        22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl   53 (353)
T TIGR03265        22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL   53 (353)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            45677889999999999999999999877653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.82  E-value=0.0067  Score=55.66  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=26.7

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   59 (289)
T PRK13645         30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTNG   59 (289)
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence            346889999999999999999999987765

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.82  E-value=0.0073  Score=54.05  Aligned_cols=30  Identities=13%  Similarity=0.347  Sum_probs=26.5

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =+.+-+|+.++|.|++|+|||||+..|+.-
T Consensus        24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (252)
T PRK14256         24 SMDFPENSVTAIIGPSGCGKSTVLRSINRM   53 (252)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            367889999999999999999999887653

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=95.82  E-value=0.007  Score=57.01  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=28.8

Q ss_pred             eEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++ |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~g   63 (327)
T PRK11308         29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTM   63 (327)
T ss_pred             eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHc
Confidence            444 4457889999999999999999999987765

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.82  E-value=0.0066  Score=55.14  Aligned_cols=31  Identities=32%  Similarity=0.517  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (271)
T PRK13638         19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSG   49 (271)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            3447788999999999999999999987765

>KOG0057|consensus

Probab=95.82  E-value=0.01  Score=59.60  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=30.5

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcE
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY  223 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v  223 (266)
                      ++|.+|.|++|.|++|+||||++..+-+.. +.+|.+
T Consensus       373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~-d~sG~I  408 (591)
T KOG0057|consen  373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFF-DYSGSI  408 (591)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHHHh-ccCCcE
Confidence            689999999999999999999999999865 433333

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=95.81  E-value=0.0078  Score=51.92  Aligned_cols=31  Identities=29%  Similarity=0.416  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (198)
T TIGR01189        18 GLSFTLNAGEALQVTGPNGIGKTTLLRILAG   48 (198)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3456788999999999999999999987765

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.81  E-value=0.007  Score=55.61  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+++.+|+.++|+|++|+|||||+..|+.
T Consensus        25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~G   55 (287)
T PRK13641         25 NISFELEEGSFVALVGHTGSGKSTLMQHFNA   55 (287)
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4447889999999999999999999987765

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.81  E-value=0.0075  Score=53.83  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        21 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   51 (250)
T PRK14266         21 NVNLDIPKNSVTALIGPSGCGKSTFIRTLNR   51 (250)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            4457788999999999999999999988764

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.80  E-value=0.007  Score=55.17  Aligned_cols=31  Identities=19%  Similarity=0.304  Sum_probs=26.9

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus        26 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl   56 (280)
T PRK13649         26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL   56 (280)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3467889999999999999999999877653

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=95.80  E-value=0.0074  Score=54.53  Aligned_cols=31  Identities=26%  Similarity=0.474  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        22 ~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~G   52 (251)
T PRK09544         22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLG   52 (251)
T ss_pred             eEEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3347788999999999999999999987765

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.80  E-value=0.0074  Score=53.95  Aligned_cols=31  Identities=13%  Similarity=0.304  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245         21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             eeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence            4447789999999999999999999998763

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=95.80  E-value=0.026  Score=47.84  Aligned_cols=67  Identities=22%  Similarity=0.219  Sum_probs=37.6

Q ss_pred             cccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcC--------CcEEEEEeecCCch-HHHHHHHHh
Q psy17544        177 VTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAH--------GGYSVFAGVGERTR-EGNDLYHEM  243 (266)
Q Consensus       177 ~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~--------~~v~V~alIGER~r-Ev~ef~~~l  243 (266)
                      .++++..|-++.  +.+|+-..|.|++|+|||+++.+++...+..+        ....|+-.-.|-.. ++.+.+..+
T Consensus        15 ~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~   92 (193)
T PF13481_consen   15 DTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRAL   92 (193)
T ss_dssp             HS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHH
T ss_pred             cCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHH
Confidence            344444443333  34899999999999999999999998876421        12334444444443 666655544

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.80  E-value=0.0073  Score=54.90  Aligned_cols=30  Identities=20%  Similarity=0.300  Sum_probs=26.5

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus        29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (271)
T PRK13632         29 SFEINEGEYVAILGHNGSGKSTISKILTGL   58 (271)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            367889999999999999999999877653

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=95.79  E-value=0.0078  Score=52.20  Aligned_cols=32  Identities=34%  Similarity=0.592  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus        26 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl   57 (207)
T cd03369          26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFRF   57 (207)
T ss_pred             CceEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            33467889999999999999999999977653

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=95.79  E-value=0.0076  Score=54.86  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        42 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl   73 (271)
T PRK14238         42 NINLDIHENEVTAIIGPSGCGKSTYIKTLNRM   73 (271)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34467889999999999999999999877753

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.78  E-value=0.0077  Score=53.85  Aligned_cols=32  Identities=19%  Similarity=0.249  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        23 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~   54 (251)
T PRK14244         23 DINLDIYKREVTAFIGPSGCGKSTFLRCFNRM   54 (251)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            44468999999999999999999999877653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.78  E-value=0.0076  Score=54.27  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   60 (258)
T PRK14268         30 NVSMQIPKNSVTALIGPSGCGKSTFIRCLNR   60 (258)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4447889999999999999999999987764

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.78  E-value=0.0075  Score=53.91  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (255)
T PRK11300         23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF   54 (255)
T ss_pred             eeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            44467889999999999999999999877753

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.78  E-value=0.0078  Score=53.69  Aligned_cols=31  Identities=23%  Similarity=0.382  Sum_probs=26.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   52 (252)
T PRK14272         22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINR   52 (252)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3346788999999999999999999987765

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.78  E-value=0.0077  Score=53.87  Aligned_cols=31  Identities=19%  Similarity=0.403  Sum_probs=26.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+..+|+|++|+|||||+..|+.
T Consensus        22 ~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~G   52 (251)
T PRK14249         22 NINMDFPERQITAIIGPSGCGKSTLLRALNR   52 (251)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3346788999999999999999999987765

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=95.78  E-value=0.0075  Score=54.17  Aligned_cols=31  Identities=23%  Similarity=0.478  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   51 (254)
T PRK10418         21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALG   51 (254)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3447899999999999999999999987764

>PRK08118 topology modulation protein; Reviewed

Probab=95.77  E-value=0.0089  Score=50.92  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=21.3

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +|+.|+|++|+|||||+..|.+.
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999875

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.77  E-value=0.014  Score=48.69  Aligned_cols=36  Identities=42%  Similarity=0.551  Sum_probs=22.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND  238 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~e  238 (266)
                      ||.|.|++++|||||+..|.+.   .   +.+   +.|-+||+.+
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~---g---~~~---v~E~ar~~~~   36 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR---G---YPV---VPEYAREIIE   36 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH---T----EE---E--TTHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc---C---CeE---EeecHHHHHH
Confidence            7899999999999999999863   2   332   3777776543

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.76  E-value=0.0069  Score=52.69  Aligned_cols=32  Identities=25%  Similarity=0.393  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus        25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (202)
T cd03233          25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANR   56 (202)
T ss_pred             eEEEEECCCcEEEEECCCCCCHHHHHHHhccc
Confidence            33467889999999999999999999877653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=95.76  E-value=0.0078  Score=54.26  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        31 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   61 (260)
T PRK10744         31 NINLDIAKNQVTAFIGPSGCGKSTLLRTFNR   61 (260)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3347788999999999999999999988765

>PRK07261 topology modulation protein; Provisional

Probab=95.76  E-value=0.0084  Score=51.13  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=21.0

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +|+.|+|.+|+|||||+..++..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            58999999999999999998764

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=95.76  E-value=0.0097  Score=62.40  Aligned_cols=61  Identities=21%  Similarity=0.395  Sum_probs=48.3

Q ss_pred             cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCch
Q psy17544        173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR  234 (266)
Q Consensus       173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~r  234 (266)
                      -+.+.||+..+|.++.   +-+|.-+.|+|++|+|||+|+.+++.+.++ .+..++|.---+..+
T Consensus        38 v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~-~G~~v~yId~E~t~~  101 (790)
T PRK09519         38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEHALD  101 (790)
T ss_pred             CceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchh
Confidence            3578899999999997   668999999999999999999998876543 345666666554444

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=95.76  E-value=0.015  Score=54.83  Aligned_cols=44  Identities=32%  Similarity=0.313  Sum_probs=38.7

Q ss_pred             cccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        173 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       173 ~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ...+.||++.+|.++.  +-+|.=+.|+|++|+|||+|+.+++.+.
T Consensus        75 ~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~  120 (316)
T TIGR02239        75 VIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTC  120 (316)
T ss_pred             cceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHH
Confidence            4568999999999877  6689999999999999999999998753

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=95.75  E-value=0.0081  Score=53.00  Aligned_cols=32  Identities=25%  Similarity=0.448  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl   50 (236)
T cd03253          19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF   50 (236)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            44567889999999999999999999887653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.75  E-value=0.0085  Score=50.64  Aligned_cols=30  Identities=27%  Similarity=0.449  Sum_probs=26.5

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~   51 (171)
T cd03228          22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRL   51 (171)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            367889999999999999999999877653

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.75  E-value=0.008  Score=53.67  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (246)
T PRK14269         20 DINMQIEQNKITALIGASGCGKSTFLRCFNR   50 (246)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4447788999999999999999999987765

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.74  E-value=0.0083  Score=53.50  Aligned_cols=30  Identities=27%  Similarity=0.381  Sum_probs=26.6

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   51 (249)
T PRK14253         22 INLPIPARQVTALIGPSGCGKSTLLRCLNR   51 (249)
T ss_pred             ceEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence            336899999999999999999999987765

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=95.74  E-value=0.0074  Score=53.86  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=26.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   55 (252)
T CHL00131         25 GLNLSINKGEIHAIMGPNGSGKSTLSKVIAG   55 (252)
T ss_pred             cceeEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence            3347788999999999999999999987664

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=95.74  E-value=0.0081  Score=51.93  Aligned_cols=32  Identities=22%  Similarity=0.410  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++.+|+.++|.|++|+|||||+..|+..
T Consensus        27 ~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl   58 (194)
T cd03213          27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAGR   58 (194)
T ss_pred             cceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            44477899999999999999999999877653

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=95.74  E-value=0.0079  Score=54.69  Aligned_cols=31  Identities=26%  Similarity=0.507  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   60 (268)
T PRK10419         30 NVSLSLKSGETVALLGRSGCGKSTLARLLVG   60 (268)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4447889999999999999999999987764

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.74  E-value=0.0088  Score=53.15  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=22.9

Q ss_pred             cccccccCceeeeecCCCccHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLI  209 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~  209 (266)
                      .=+.+.+|+.++|.|++|+|||||+
T Consensus        14 vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270          14 VDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             ceeecCCCcEEEEEcCCCCCHHHHH
Confidence            3478999999999999999999997

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.72  E-value=0.0083  Score=54.90  Aligned_cols=32  Identities=22%  Similarity=0.338  Sum_probs=28.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl   70 (276)
T PRK14271         39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM   70 (276)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            55578899999999999999999999988753

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.71  E-value=0.0086  Score=53.56  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=26.4

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+++.+|+.++|+|++|+|||||+..|+.
T Consensus        23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   52 (251)
T PRK14270         23 INLPIYENKITALIGPSGCGKSTFLRCLNR   52 (251)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            336788999999999999999999987764

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.71  E-value=0.0078  Score=52.25  Aligned_cols=30  Identities=33%  Similarity=0.503  Sum_probs=25.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+| .++|.|++|+|||||+..|+.
T Consensus        18 ~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~G   47 (211)
T cd03264          18 GVSLTLGPG-MYGLLGPNGAGKTTLMRILAT   47 (211)
T ss_pred             ceeEEEcCC-cEEEECCCCCCHHHHHHHHhC
Confidence            344677889 999999999999999988765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=95.71  E-value=0.0084  Score=53.87  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   54 (257)
T PRK10619         23 GVSLQANAGDVISIIGSSGSGKSTFLRCINFL   54 (257)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34467889999999999999999999877653

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=95.70  E-value=0.0081  Score=56.72  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=29.5

Q ss_pred             eEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++ |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~G   69 (331)
T PRK15079         35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIG   69 (331)
T ss_pred             EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence            455 5567899999999999999999999988765

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=95.70  E-value=0.0079  Score=56.74  Aligned_cols=35  Identities=26%  Similarity=0.514  Sum_probs=29.2

Q ss_pred             ceEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        180 IKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       180 IraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ++++| .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~G   64 (330)
T PRK09473         29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMG   64 (330)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence            34553 447899999999999999999999988775

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.70  E-value=0.0086  Score=53.61  Aligned_cols=30  Identities=23%  Similarity=0.358  Sum_probs=26.6

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        25 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261         25 ITISIPKNRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             eEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence            337888999999999999999999988864

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=95.70  E-value=0.0098  Score=53.70  Aligned_cols=27  Identities=33%  Similarity=0.596  Sum_probs=24.3

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+.+|+.++|+|++|+|||||+..|+.
T Consensus        21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G   47 (246)
T cd03237          21 SISESEVIGILGPNGIGKTTFIKMLAG   47 (246)
T ss_pred             CcCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            467999999999999999999987765

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.70  E-value=0.0083  Score=55.11  Aligned_cols=32  Identities=25%  Similarity=0.459  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl   56 (286)
T PRK13646         25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL   56 (286)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            33467889999999999999999999988753

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.69  E-value=0.0079  Score=53.25  Aligned_cols=30  Identities=30%  Similarity=0.455  Sum_probs=26.5

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (237)
T PRK11614         24 VSLHINQGEIVTLIGANGAGKTTLLGTLCG   53 (237)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence            347889999999999999999999987764

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=95.68  E-value=0.0088  Score=54.41  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        42 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl   73 (269)
T cd03294          42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRL   73 (269)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            44477889999999999999999999877653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=95.67  E-value=0.0086  Score=52.70  Aligned_cols=32  Identities=25%  Similarity=0.462  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++-+|+.++|.|++|+|||||+..|+..
T Consensus        25 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~   56 (226)
T cd03234          25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGR   56 (226)
T ss_pred             CceEEEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence            34567899999999999999999999977754

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=95.67  E-value=0.0086  Score=56.35  Aligned_cols=35  Identities=23%  Similarity=0.480  Sum_probs=29.6

Q ss_pred             eEe-ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +++ |.=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus        21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl   56 (326)
T PRK11022         21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL   56 (326)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence            455 34488999999999999999999999887763

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.67  E-value=0.013  Score=53.10  Aligned_cols=31  Identities=29%  Similarity=0.489  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        26 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   56 (261)
T PRK14263         26 DSHVPIRKNEITGFIGPSGCGKSTVLRSLNR   56 (261)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            4457789999999999999999999987754

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.66  E-value=0.0093  Score=53.27  Aligned_cols=31  Identities=19%  Similarity=0.342  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        22 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   52 (251)
T PRK14251         22 GISLDFEEKELTALIGPSGCGKSTFLRCLNR   52 (251)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            3447788999999999999999999987765

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=95.66  E-value=0.0089  Score=52.16  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=28.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   47 (213)
T TIGR01277        16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF   47 (213)
T ss_pred             eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            55688999999999999999999999887754

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.66  E-value=0.0089  Score=54.01  Aligned_cols=62  Identities=21%  Similarity=0.313  Sum_probs=40.2

Q ss_pred             ceEe-ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee---cCCchHHHHHHHH
Q psy17544        180 IKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV---GERTREGNDLYHE  242 (266)
Q Consensus       180 IraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI---GER~rEv~ef~~~  242 (266)
                      +.++ |.=+.+-+|.-+.|.|+||+|||||+..+.- ..+.+.+.+.|.+.   -...++..+|.++
T Consensus        18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~-ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~   83 (226)
T COG1136          18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG-LDKPTSGEVLINGKDLTKLSEKELAKLRRK   83 (226)
T ss_pred             eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc-ccCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence            4455 5557899999999999999999999986643 33334345444441   1223345555544

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.66  E-value=0.0086  Score=55.11  Aligned_cols=31  Identities=32%  Similarity=0.472  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~G   54 (288)
T PRK13643         24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNG   54 (288)
T ss_pred             eeEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence            5667899999999999999999999987764

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=95.66  E-value=0.0088  Score=54.77  Aligned_cols=31  Identities=32%  Similarity=0.488  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        19 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG   49 (272)
T PRK13547         19 DLSLRIEPGRVTALLGRNGAGKSTLLKALAG   49 (272)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3446789999999999999999999987765

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=95.65  E-value=0.0085  Score=57.67  Aligned_cols=31  Identities=26%  Similarity=0.416  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        32 ~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaG   62 (375)
T PRK09452         32 NLDLTINNGEFLTLLGPSGCGKTTVLRLIAG   62 (375)
T ss_pred             eeEEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4558899999999999999999999987764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=95.64  E-value=0.0091  Score=53.80  Aligned_cols=31  Identities=26%  Similarity=0.427  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   52 (262)
T PRK09984         22 AVDLNIHHGEMVALLGPSGSGKSTLLRHLSG   52 (262)
T ss_pred             cceEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4446788999999999999999999987765

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.63  E-value=0.0092  Score=54.87  Aligned_cols=31  Identities=16%  Similarity=0.254  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G   87 (286)
T PRK14275         57 KVNADILSKYVTAIIGPSGCGKSTFLRAINR   87 (286)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4557899999999999999999999987764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=95.63  E-value=0.0095  Score=52.66  Aligned_cols=32  Identities=34%  Similarity=0.563  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        40 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   71 (224)
T cd03220          40 DVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI   71 (224)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44468899999999999999999999877753

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.62  E-value=0.0098  Score=54.31  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        38 ~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G   68 (274)
T PRK14265         38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR   68 (274)
T ss_pred             eeeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4447789999999999999999999987763

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=95.62  E-value=0.009  Score=55.70  Aligned_cols=31  Identities=29%  Similarity=0.455  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~G   55 (305)
T PRK13651         25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLNA   55 (305)
T ss_pred             eeEEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4457899999999999999999999987764

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.62  E-value=0.0093  Score=54.22  Aligned_cols=31  Identities=23%  Similarity=0.489  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        31 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   61 (269)
T PRK14259         31 NVFCDIPRGKVTALIGPSGCGKSTVLRSLNR   61 (269)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3347899999999999999999999988765

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.61  E-value=0.0097  Score=53.80  Aligned_cols=41  Identities=27%  Similarity=0.454  Sum_probs=30.2

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  228 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al  228 (266)
                      +++.+|+.+.|+||||+|||||+..| +..-.-+.+-+.+.+
T Consensus        23 l~v~~Gevv~iiGpSGSGKSTlLRcl-N~LE~~~~G~I~i~g   63 (240)
T COG1126          23 LSVEKGEVVVIIGPSGSGKSTLLRCL-NGLEEPDSGSITVDG   63 (240)
T ss_pred             eeEcCCCEEEEECCCCCCHHHHHHHH-HCCcCCCCceEEECC
Confidence            67999999999999999999999755 333333434454444

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=95.61  E-value=0.0096  Score=52.87  Aligned_cols=31  Identities=23%  Similarity=0.452  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+++.+|+.++|.|++|+|||||+..|+.
T Consensus        17 ~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G   47 (235)
T cd03299          17 NVSLEVERGDYFVILGPTGSGKSVLLETIAG   47 (235)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3347888999999999999999999987765

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=95.61  E-value=0.01  Score=51.86  Aligned_cols=32  Identities=28%  Similarity=0.572  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+-.
T Consensus        22 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (221)
T cd03244          22 NISFSIKPGEKVGIVGRTGSGKSSLLLALFRL   53 (221)
T ss_pred             ceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            34477889999999999999999999877653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=95.60  E-value=0.01  Score=53.87  Aligned_cols=32  Identities=19%  Similarity=0.250  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        37 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   68 (267)
T PRK14235         37 DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM   68 (267)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            44467889999999999999999999877653

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.59  E-value=0.0098  Score=54.30  Aligned_cols=30  Identities=33%  Similarity=0.582  Sum_probs=26.7

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        24 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (274)
T PRK13647         24 LSLSIPEGSKTALLGPNGAGKSTLLLHLNG   53 (274)
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            337889999999999999999999987765

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=95.59  E-value=0.0094  Score=56.72  Aligned_cols=31  Identities=26%  Similarity=0.389  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|..
T Consensus        23 ~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~g   53 (343)
T TIGR02314        23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNL   53 (343)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4457899999999999999999999987755

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=95.59  E-value=0.01  Score=52.47  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        18 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~   49 (232)
T cd03300          18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF   49 (232)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            33477889999999999999999999988764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.58  E-value=0.0098  Score=53.58  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=27.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++-+|+.++|.|++|+|||||+..|+..
T Consensus        25 ~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   56 (259)
T PRK14260         25 GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI   56 (259)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34478889999999999999999999988763

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=95.57  E-value=0.011  Score=53.35  Aligned_cols=30  Identities=30%  Similarity=0.492  Sum_probs=26.6

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (257)
T cd03288          41 KAYIKPGQKVGICGRTGSGKSSLSLAFFRM   70 (257)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence            367889999999999999999999877653

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=95.56  E-value=0.017  Score=52.37  Aligned_cols=52  Identities=19%  Similarity=0.423  Sum_probs=31.2

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe-ecCCchHHHHHHHHhHhcCcc
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGERTREGNDLYHEMIESGVI  249 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al-IGER~rEv~ef~~~l~~~gvl  249 (266)
                      +.++||+|+|||||+.-|++.. ..+  ...+.+ .=++..+....+..+.+..++
T Consensus        53 ~lf~GPPG~GKTTLA~IIA~e~-~~~--~~~~sg~~i~k~~dl~~il~~l~~~~IL  105 (233)
T PF05496_consen   53 MLFYGPPGLGKTTLARIIANEL-GVN--FKITSGPAIEKAGDLAAILTNLKEGDIL  105 (233)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHC-T----EEEEECCC--SCHHHHHHHHT--TT-EE
T ss_pred             EEEECCCccchhHHHHHHHhcc-CCC--eEeccchhhhhHHHHHHHHHhcCCCcEE
Confidence            5689999999999998676642 332  433333 336777777777766554443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.56  E-value=0.0099  Score=56.69  Aligned_cols=31  Identities=26%  Similarity=0.423  Sum_probs=26.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+..|.-+.|+||||||||||+.+|+-
T Consensus        21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3557899999999999999999999986653

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=95.55  E-value=0.01  Score=54.19  Aligned_cols=31  Identities=32%  Similarity=0.376  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+++.+|++++|.|++|+|||||+..|+.
T Consensus        42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~G   72 (264)
T PRK13546         42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGG   72 (264)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            5556899999999999999999999987765

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=95.55  E-value=0.011  Score=53.18  Aligned_cols=29  Identities=24%  Similarity=0.373  Sum_probs=26.1

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      =+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   50 (255)
T PRK11231         22 SLSLPTGKITALIGPNGCGKSTLLKCFAR   50 (255)
T ss_pred             eeEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            36788999999999999999999987765

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.55  E-value=0.01  Score=54.61  Aligned_cols=31  Identities=32%  Similarity=0.521  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+++-+|+.++|.|++|+|||||+..|+.
T Consensus        25 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~G   55 (287)
T PRK13637         25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG   55 (287)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            3347899999999999999999999987764

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.55  E-value=0.01  Score=49.03  Aligned_cols=29  Identities=31%  Similarity=0.582  Sum_probs=25.8

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+-+|+..+|.|++|+|||||+..|+..
T Consensus        21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (144)
T cd03221          21 LTINPGDRIGLVGRNGAGKSTLLKLIAGE   49 (144)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            56789999999999999999999877653

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.55  E-value=0.01  Score=54.18  Aligned_cols=31  Identities=26%  Similarity=0.458  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G   50 (275)
T PRK13639         20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNG   50 (275)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4447899999999999999999999987764

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.55  E-value=0.011  Score=54.52  Aligned_cols=31  Identities=16%  Similarity=0.320  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        57 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~G   87 (285)
T PRK14254         57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINR   87 (285)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3346788999999999999999999987765

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=95.55  E-value=0.011  Score=53.72  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=27.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl   62 (267)
T PRK15112         31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGM   62 (267)
T ss_pred             eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            45578899999999999999999999877653

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.53  E-value=0.011  Score=53.47  Aligned_cols=31  Identities=16%  Similarity=0.248  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        34 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   64 (265)
T PRK14252         34 NINMMVHEKQVTALIGPSGCGKSTFLRCFNR   64 (265)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            5556788999999999999999999987764

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=95.53  E-value=0.01  Score=56.83  Aligned_cols=31  Identities=23%  Similarity=0.390  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+-
T Consensus        21 ~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaG   51 (369)
T PRK11000         21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG   51 (369)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            3447889999999999999999999987764

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=95.52  E-value=0.011  Score=58.01  Aligned_cols=47  Identities=30%  Similarity=0.573  Sum_probs=37.2

Q ss_pred             ceEeecc-cccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544        180 IKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  228 (266)
Q Consensus       180 IraID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al  228 (266)
                      ++|+|.+ +++-+||.+||.|.||+|||||-..+.+=. ..+ +.+.|.+
T Consensus       300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~-~s~-G~I~F~G  347 (534)
T COG4172         300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PSQ-GEIRFDG  347 (534)
T ss_pred             eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc-CcC-ceEEECC
Confidence            5777765 789999999999999999999999888743 333 4565654

>PRK05748 replicative DNA helicase; Provisional

Probab=95.52  E-value=0.019  Score=56.20  Aligned_cols=63  Identities=17%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHH
Q psy17544        174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG  236 (266)
Q Consensus       174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv  236 (266)
                      .-+.||+..+|-++. +-+|+=+.|=|.+|+|||+|+.+++.+.+..++.-++|.-.-+...++
T Consensus       184 ~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l  247 (448)
T PRK05748        184 TGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL  247 (448)
T ss_pred             CCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence            468999999999874 778999999999999999999999988664433334444444444443

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.52  E-value=0.011  Score=51.07  Aligned_cols=28  Identities=32%  Similarity=0.425  Sum_probs=25.4

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.+-+|+.++|.|++|+|||||+..|+-
T Consensus        28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          28 GYVKPGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence            5788999999999999999999987763

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=95.52  E-value=0.01  Score=59.58  Aligned_cols=33  Identities=27%  Similarity=0.493  Sum_probs=29.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+++..|+|+.|.|.+|+|||||++-+.+++
T Consensus       356 ~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~  388 (573)
T COG4987         356 NFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW  388 (573)
T ss_pred             ccceeecCCCeEEEECCCCCCHHHHHHHHHhcc
Confidence            344789999999999999999999999888866

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.51  E-value=0.011  Score=54.26  Aligned_cols=31  Identities=23%  Similarity=0.358  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        25 ~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G   55 (282)
T PRK13640         25 DISFSIPRGSWTALIGHNGSGKSTISKLING   55 (282)
T ss_pred             eEEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            3346788999999999999999999988765

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=95.51  E-value=0.012  Score=51.69  Aligned_cols=31  Identities=29%  Similarity=0.339  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+..+|.|++|+|||||+..|+.
T Consensus        23 ~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G   53 (220)
T TIGR02982        23 DINLEINPGEIVILTGPSGSGKTTLLTLIGG   53 (220)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3447788999999999999999999987764

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.51  E-value=0.011  Score=54.94  Aligned_cols=31  Identities=19%  Similarity=0.295  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        63 ~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~G   93 (305)
T PRK14264         63 GVSMDIPEKSVTALIGPSGCGKSTFLRCLNR   93 (305)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4457789999999999999999999988765

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.50  E-value=0.011  Score=54.16  Aligned_cols=31  Identities=19%  Similarity=0.311  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   55 (279)
T PRK13650         25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG   55 (279)
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence            5558899999999999999999999987765

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=95.49  E-value=0.011  Score=52.64  Aligned_cols=30  Identities=23%  Similarity=0.298  Sum_probs=26.4

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =+.+-+|+.++|.|++|+|||||+..|+..
T Consensus        21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            367889999999999999999999877653

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.48  E-value=0.011  Score=52.10  Aligned_cols=27  Identities=26%  Similarity=0.507  Sum_probs=24.0

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii  213 (266)
                      +-+-+|++++|+|+||+|||||++-++
T Consensus        31 L~v~~Ge~vaiVG~SGSGKSTLl~vlA   57 (228)
T COG4181          31 LVVKRGETVAIVGPSGSGKSTLLAVLA   57 (228)
T ss_pred             EEecCCceEEEEcCCCCcHHhHHHHHh
Confidence            457899999999999999999997654

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=95.48  E-value=0.013  Score=55.55  Aligned_cols=31  Identities=32%  Similarity=0.438  Sum_probs=28.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaG   45 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAG   45 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            6668899999999999999999999987765

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=95.47  E-value=0.011  Score=54.51  Aligned_cols=32  Identities=28%  Similarity=0.529  Sum_probs=27.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|++++|+|++|+|||||+..|+..
T Consensus        55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl   86 (282)
T cd03291          55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGE   86 (282)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            55577899999999999999999999877653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.47  E-value=0.012  Score=48.68  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+..+|.|++|+|||||+..|+..
T Consensus        17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~   48 (157)
T cd00267          17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL   48 (157)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45567889999999999999999999877653

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05973 replicative DNA helicase; Provisional

Probab=95.47  E-value=0.046  Score=49.64  Aligned_cols=55  Identities=25%  Similarity=0.297  Sum_probs=41.5

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG  247 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g  247 (266)
                      +-+|+=+.|.|.+|+|||+|+.+++.+.++ ++.-++|.-.=|..++   +++.+...|
T Consensus        61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~~~---i~~R~~s~g  115 (237)
T PRK05973         61 LKPGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTEQD---VRDRLRALG  115 (237)
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCHHH---HHHHHHHcC
Confidence            678999999999999999999999987654 3556777766666544   444555555

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=95.45  E-value=0.011  Score=54.70  Aligned_cols=31  Identities=23%  Similarity=0.431  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|.|+.|+|||||+..|+.
T Consensus        20 ~is~~i~~Gei~~l~G~NGaGKTTLl~~l~G   50 (301)
T TIGR03522        20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITG   50 (301)
T ss_pred             EeEEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence            4447789999999999999999999997765

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=95.45  E-value=0.012  Score=53.53  Aligned_cols=31  Identities=23%  Similarity=0.354  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+-
T Consensus        43 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laG   73 (272)
T PRK14236         43 DISMRIPKNRVTAFIGPSGCGKSTLLRCFNR   73 (272)
T ss_pred             eEEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3447788999999999999999999987764

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=95.44  E-value=0.012  Score=53.82  Aligned_cols=31  Identities=29%  Similarity=0.568  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|.|+||+|..|+|||||+..|+.
T Consensus        45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaG   75 (249)
T COG1134          45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAG   75 (249)
T ss_pred             CceEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence            5668899999999999999999999986653

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.43  E-value=0.012  Score=53.24  Aligned_cols=32  Identities=25%  Similarity=0.427  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        28 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~   59 (257)
T PRK14246         28 DITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL   59 (257)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44477899999999999999999999877653

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.40  E-value=0.012  Score=53.67  Aligned_cols=32  Identities=31%  Similarity=0.483  Sum_probs=28.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++-+|+.++|.|++|+|||||+..|+..
T Consensus        20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (274)
T PRK13644         20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGL   51 (274)
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            44478999999999999999999999887753

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=95.40  E-value=0.011  Score=53.04  Aligned_cols=31  Identities=29%  Similarity=0.450  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~G   44 (248)
T PRK03695         14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAG   44 (248)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            4446788999999999999999999987764

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.40  E-value=0.025  Score=53.54  Aligned_cols=63  Identities=25%  Similarity=0.409  Sum_probs=43.5

Q ss_pred             cceEee-cccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe---ecCCchHHHHHHHH
Q psy17544        179 GIKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG---VGERTREGNDLYHE  242 (266)
Q Consensus       179 GIraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al---IGER~rEv~ef~~~  242 (266)
                      .+.++| .=+.+-+|+..||+|.||+|||||+. +++..-+-+.+-+.+.+   -.-...+.+.+.++
T Consensus        18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR-~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~   84 (339)
T COG1135          18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLR-LINLLERPTSGSVFVDGQDLTALSEAELRQLRQK   84 (339)
T ss_pred             ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHH-HHhccCCCCCceEEEcCEecccCChHHHHHHHhh
Confidence            466776 77899999999999999999999997 55544333334444444   33455566665544

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=95.40  E-value=0.013  Score=54.05  Aligned_cols=29  Identities=28%  Similarity=0.604  Sum_probs=26.8

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.|-+|++++|+|++|+|||||+..|...
T Consensus        25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl   53 (275)
T cd03289          25 FSISPGQRVGLLGRTGSGKSTLLSAFLRL   53 (275)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhh
Confidence            78999999999999999999999988764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=95.40  E-value=0.012  Score=52.82  Aligned_cols=29  Identities=31%  Similarity=0.439  Sum_probs=25.9

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      =+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   49 (256)
T TIGR03873        21 DVTAPPGSLTGLLGPNGSGKSTLLRLLAG   49 (256)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence            36788999999999999999999987765

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.39  E-value=0.012  Score=54.12  Aligned_cols=30  Identities=23%  Similarity=0.412  Sum_probs=26.7

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =+.+-+|+.++|+|++|+|||||+..|...
T Consensus        27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (290)
T PRK13634         27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGL   56 (290)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            378999999999999999999999877653

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=95.39  E-value=0.024  Score=54.89  Aligned_cols=44  Identities=34%  Similarity=0.418  Sum_probs=39.8

Q ss_pred             ccccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        174 EILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       174 e~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      .-+.||+..+|-++ -+-+|+=+-|-|.+|+|||+++.+++.+.+
T Consensus       175 ~gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a  219 (421)
T TIGR03600       175 TGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVA  219 (421)
T ss_pred             cceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            34799999999988 488999999999999999999999998876

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=95.38  E-value=0.014  Score=50.78  Aligned_cols=30  Identities=23%  Similarity=0.459  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+ +.++|.|++|+|||||+..|+.
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G   45 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAG   45 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhC
Confidence            88899999 9999999999999999987765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.37  E-value=0.013  Score=53.70  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+++-+|+.++|.|++|+|||||+..|+.
T Consensus        25 ~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G   55 (279)
T PRK13635         25 DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG   55 (279)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            3347888999999999999999999987765

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=95.36  E-value=0.018  Score=51.19  Aligned_cols=57  Identities=26%  Similarity=0.463  Sum_probs=36.6

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecC---------CchHHHHHHHHhHhcCcc
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGE---------RTREGNDLYHEMIESGVI  249 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGE---------R~rEv~ef~~~l~~~gvl  249 (266)
                      .-+-|+|++|+|||.|++.+++...+.+++ .++|.-.-+         +..+..+|.+.+.+..++
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL  101 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLL  101 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEE
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEE
Confidence            357899999999999999998865544444 344442211         224455666666666665

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.35  E-value=0.013  Score=52.84  Aligned_cols=32  Identities=16%  Similarity=0.233  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.-
T Consensus        25 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl   56 (261)
T PRK14258         25 GVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM   56 (261)
T ss_pred             ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            44477899999999999999999999877753

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=95.35  E-value=0.0083  Score=54.70  Aligned_cols=45  Identities=33%  Similarity=0.426  Sum_probs=37.1

Q ss_pred             ccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        172 EQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       172 ~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -...|.||++.+|.++-  +-.|+=.=|+|++|+|||.|+.+++.+.
T Consensus        16 ~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~   62 (256)
T PF08423_consen   16 RWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV   62 (256)
T ss_dssp             TS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence            34678999999999984  6788899999999999999999998764

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=95.34  E-value=0.013  Score=55.49  Aligned_cols=31  Identities=26%  Similarity=0.425  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        23 ~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~G   53 (343)
T PRK11153         23 NVSLHIPAGEIFGVIGASGAGKSTLIRCINL   53 (343)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4447889999999999999999999987765

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=95.30  E-value=0.013  Score=56.34  Aligned_cols=31  Identities=32%  Similarity=0.513  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+-
T Consensus        37 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaG   67 (377)
T PRK11607         37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAG   67 (377)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            3447888999999999999999999987764

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=95.30  E-value=0.014  Score=55.41  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=29.3

Q ss_pred             eEe-ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .++ |.=+++.+|+.++|.|+.|+|||||+..|+..
T Consensus        55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl   90 (340)
T PRK13536         55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM   90 (340)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            355 44478999999999999999999999988653

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=95.30  E-value=0.018  Score=44.74  Aligned_cols=22  Identities=50%  Similarity=0.715  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|++|+|||+|+..++..
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~   22 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGG   22 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999988854

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.29  E-value=0.014  Score=54.84  Aligned_cols=28  Identities=21%  Similarity=0.392  Sum_probs=25.9

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.+.+|+.++|.|++|+|||||+..|..
T Consensus        47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~G   74 (320)
T PRK13631         47 YTFEKNKIYFIIGNSGSGKSTLVTHFNG   74 (320)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            7889999999999999999999987765

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=95.29  E-value=0.014  Score=54.38  Aligned_cols=32  Identities=31%  Similarity=0.442  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|.|+.|+|||||+..|+.-
T Consensus        25 ~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl   56 (306)
T PRK13537         25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL   56 (306)
T ss_pred             cceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            34478899999999999999999999988753

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=95.28  E-value=0.014  Score=55.88  Aligned_cols=31  Identities=32%  Similarity=0.526  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+..|+.++|+|++|+|||||+..|+-
T Consensus        23 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG   53 (362)
T TIGR03258        23 DLSLEIEAGELLALIGKSGCGKTTLLRAIAG   53 (362)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4457788999999999999999999987764

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.28  E-value=0.014  Score=53.21  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=27.7

Q ss_pred             Eeecc-cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        182 VVDLL-APYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       182 aID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++-+ +.+-+|+.++|.|++|+|||||+..|+.
T Consensus        22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~G   55 (277)
T PRK13642         22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDG   55 (277)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            44433 6788999999999999999999987764

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.28  E-value=0.014  Score=52.08  Aligned_cols=28  Identities=25%  Similarity=0.442  Sum_probs=25.9

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |++-+||.++|+|..|+|||||+.|++-
T Consensus        34 FtL~~~QTlaiIG~NGSGKSTLakMlaG   61 (267)
T COG4167          34 FTLREGQTLAIIGENGSGKSTLAKMLAG   61 (267)
T ss_pred             EEecCCcEEEEEccCCCcHhHHHHHHhc
Confidence            6799999999999999999999998764

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=95.27  E-value=0.015  Score=58.26  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+||+++|.|++|+|||||+..|..-
T Consensus       361 ~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl  392 (582)
T PRK11176        361 NINFKIPAGKTVALVGRSGSGKSTIANLLTRF  392 (582)
T ss_pred             CceEEeCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            44466889999999999999999999877764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.26  E-value=0.026  Score=52.40  Aligned_cols=63  Identities=22%  Similarity=0.300  Sum_probs=41.9

Q ss_pred             cceEe-ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHH
Q psy17544        179 GIKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE  242 (266)
Q Consensus       179 GIraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~  242 (266)
                      +-+++ |.-+++-+|.=..++|+||+||||++.|| +..-+-+.+.+.|-+---+.-...++.+.
T Consensus        13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMI-NrLiept~G~I~i~g~~i~~~d~~~LRr~   76 (309)
T COG1125          13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI-NRLIEPTSGEILIDGEDISDLDPVELRRK   76 (309)
T ss_pred             CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHH-hcccCCCCceEEECCeecccCCHHHHHHh
Confidence            34555 55678999999999999999999999866 44444443455554444344335555544

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.23  E-value=0.015  Score=53.04  Aligned_cols=32  Identities=19%  Similarity=0.334  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus        22 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl   53 (277)
T PRK13652         22 NINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI   53 (277)
T ss_pred             EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34478899999999999999999999877653

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=95.22  E-value=0.013  Score=58.75  Aligned_cols=33  Identities=33%  Similarity=0.501  Sum_probs=28.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+++-+|++++|.|++|+|||||+.-+.+..
T Consensus       368 ~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            334788999999999999999999999887754

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=95.21  E-value=0.014  Score=60.12  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=28.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+||+++|.|++|+|||||+..|..-
T Consensus       492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl  523 (708)
T TIGR01193       492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF  523 (708)
T ss_pred             ceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            44578999999999999999999999887764

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.18  E-value=0.015  Score=53.49  Aligned_cols=32  Identities=34%  Similarity=0.486  Sum_probs=28.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++-+|.-.+|+|+.|+|||||+..|++-
T Consensus        20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             cceEEecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            45578999999999999999999999988774

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=95.18  E-value=0.016  Score=53.03  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++.+|+.++|.|++|+|||||+..|+..
T Consensus        28 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   59 (280)
T PRK13633         28 DVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL   59 (280)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44467889999999999999999999888754

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.17  E-value=0.035  Score=43.77  Aligned_cols=51  Identities=22%  Similarity=0.339  Sum_probs=31.7

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHHHhc-----CCcEEEEEeecCCchHHHHHHHHhH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGERTREGNDLYHEMI  244 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~-----~~~v~V~alIGER~rEv~ef~~~l~  244 (266)
                      ++-+-|.|++|+|||+++..+++.....     + .-+++.-+.... ...+|++++-
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~i~   59 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNH-PDVIYVNCPSSR-TPRDFAQEIL   59 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCC-EEEEEEEHHHHS-SHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCC-CcEEEEEeCCCC-CHHHHHHHHH
Confidence            3446789999999999999999865421     2 234455555444 5666666654

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=95.17  E-value=0.014  Score=59.68  Aligned_cols=31  Identities=39%  Similarity=0.595  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|+|+.|+|||||+..|+.
T Consensus        19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G   49 (638)
T PRK10636         19 NATATINPGQKVGLVGKNGCGKSTLLALLKN   49 (638)
T ss_pred             CcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4457899999999999999999999987765

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.17  E-value=0.015  Score=54.89  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=27.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++-+|++++|.|++|+|||||+..|...
T Consensus       100 ~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~  131 (329)
T PRK14257        100 DLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL  131 (329)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            44467889999999999999999999988764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=95.16  E-value=0.015  Score=55.74  Aligned_cols=32  Identities=28%  Similarity=0.274  Sum_probs=28.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|...
T Consensus        11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl   42 (363)
T TIGR01186        11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL   42 (363)
T ss_pred             eeEEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            45578999999999999999999999987764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=95.16  E-value=0.014  Score=58.64  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=28.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+++-+||+++|.|++|+|||||+.-|..-
T Consensus       359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl  390 (592)
T PRK10790        359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGY  390 (592)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            55578999999999999999999999887664

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=95.16  E-value=0.015  Score=57.59  Aligned_cols=32  Identities=28%  Similarity=0.529  Sum_probs=28.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|++++|+|++|+|||||+..|+..
T Consensus        18 ~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl   49 (520)
T TIGR03269        18 NISFTIEEGEVLGILGRSGAGKSVLMHVLRGM   49 (520)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            45568999999999999999999999987764

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.16  E-value=0.019  Score=44.88  Aligned_cols=21  Identities=43%  Similarity=0.627  Sum_probs=19.1

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+|.|.+|+|||||+..+...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999998875

...

>PLN03073 ABC transporter F family; Provisional

Probab=95.14  E-value=0.014  Score=60.80  Aligned_cols=31  Identities=32%  Similarity=0.445  Sum_probs=28.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=++|..|+|+||+|++|+|||||+..|+.
T Consensus       195 ~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g  225 (718)
T PLN03073        195 DASVTLAFGRHYGLVGRNGTGKTTFLRYMAM  225 (718)
T ss_pred             CCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence            5678899999999999999999999987763

>PRK08084 DNA replication initiation factor; Provisional

Probab=95.10  E-value=0.024  Score=50.76  Aligned_cols=37  Identities=19%  Similarity=0.344  Sum_probs=25.6

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV  229 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI  229 (266)
                      +..+-|+|++|+|||+|+..+++.. ...+..++|.-.
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~-~~~~~~v~y~~~   81 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAEL-SQRGRAVGYVPL   81 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEEH
Confidence            4578899999999999999887753 322223445433

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=95.07  E-value=0.02  Score=56.64  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=28.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+.+.+|++++|.|++|+|||||+..+....
T Consensus       340 ~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  372 (529)
T TIGR02857       340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV  372 (529)
T ss_pred             ceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344678899999999999999999998887643

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=95.07  E-value=0.015  Score=59.83  Aligned_cols=33  Identities=21%  Similarity=0.430  Sum_probs=28.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|....
T Consensus       497 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~  529 (710)
T TIGR03796       497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY  529 (710)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344678899999999999999999998877643

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PF13245 AAA_19: Part of AAA domain

Probab=95.06  E-value=0.033  Score=41.68  Aligned_cols=51  Identities=22%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             Cceee-eecCCCccHHHHHHHHHHHHHhc--CCcEEEEEeecCCchHHHHHHHHh
Q psy17544        192 GGKIG-LFGGAGVGKTVLIMELINNVAKA--HGGYSVFAGVGERTREGNDLYHEM  243 (266)
Q Consensus       192 GQr~g-Ifgg~G~GKT~L~~~ii~~~a~~--~~~v~V~alIGER~rEv~ef~~~l  243 (266)
                      ++++. |-|++|+|||+++..++......  ++.-.|. .+--+.+-+.++.+.+
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vl-v~a~t~~aa~~l~~rl   62 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVL-VLAPTRAAADELRERL   62 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEE-EECCCHHHHHHHHHHH
Confidence            44444 59999999998887777766532  1111222 2244566677777777

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=95.05  E-value=0.016  Score=59.23  Aligned_cols=31  Identities=23%  Similarity=0.329  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|+|++|+|||||+..|+.
T Consensus        21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG   51 (635)
T PRK11147         21 NAELHIEDNERVCLVGRNGAGKSTLMKILNG   51 (635)
T ss_pred             CcEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence            4557899999999999999999999987765

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=95.04  E-value=0.019  Score=50.96  Aligned_cols=29  Identities=21%  Similarity=0.446  Sum_probs=24.3

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +++-.|+++.|.|+||+|||||+.-| .+.
T Consensus        20 l~v~~ge~vAi~GpSGaGKSTLLnLI-AGF   48 (231)
T COG3840          20 LTVPAGEIVAILGPSGAGKSTLLNLI-AGF   48 (231)
T ss_pred             EeecCCcEEEEECCCCccHHHHHHHH-Hhc
Confidence            45779999999999999999999744 444

>TIGR00235 udk uridine kinase

Probab=95.04  E-value=0.02  Score=49.94  Aligned_cols=25  Identities=40%  Similarity=0.638  Sum_probs=22.5

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +|..++|.|++|+|||||+..|...
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999988764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK00300 gmk guanylate kinase; Provisional

Probab=95.03  E-value=0.022  Score=49.07  Aligned_cols=26  Identities=35%  Similarity=0.538  Sum_probs=23.5

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -+|+-+.|.|++|+|||||+..++..
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            47999999999999999999988774

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=95.01  E-value=0.017  Score=57.08  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        22 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~   53 (501)
T PRK10762         22 GAALNVYPGRVMALVGENGAGKSTMMKVLTGI   53 (501)
T ss_pred             eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            44568999999999999999999999877653

>PRK08727 hypothetical protein; Validated

Probab=95.01  E-value=0.044  Score=49.02  Aligned_cols=57  Identities=21%  Similarity=0.255  Sum_probs=39.9

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccc
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS  250 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~  250 (266)
                      +-+.|.|++|+|||.|+..+++.. ...+-.++|.-..+..+...++++.+....++=
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLi   98 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAA-EQAGRSSAYLPLQAAAGRLRDALEALEGRSLVA   98 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEE
Confidence            348999999999999999887753 333334566666666666666666666666553

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=95.01  E-value=0.018  Score=57.31  Aligned_cols=33  Identities=24%  Similarity=0.555  Sum_probs=28.1

Q ss_pred             Eee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        182 VVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       182 aID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ++| .=+.+-+|++++|.|++|+|||||+..|+.
T Consensus        16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G   49 (530)
T PRK15064         16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGG   49 (530)
T ss_pred             eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            443 446899999999999999999999987765

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.99  E-value=0.02  Score=52.54  Aligned_cols=31  Identities=29%  Similarity=0.501  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~G   54 (283)
T PRK13636         24 GININIKKGEVTAILGGNGAGKSTLFQNLNG   54 (283)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4457888999999999999999999987765

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=94.97  E-value=0.066  Score=41.49  Aligned_cols=26  Identities=31%  Similarity=0.503  Sum_probs=22.7

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.-+.|.|++|+|||+|+..+++..
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998864

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=94.97  E-value=0.026  Score=56.88  Aligned_cols=48  Identities=31%  Similarity=0.497  Sum_probs=37.5

Q ss_pred             ceEeec-ccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544        180 IKVVDL-LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  228 (266)
Q Consensus       180 IraID~-L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al  228 (266)
                      ++|+|. =|.+-+|+.+||+|.||+|||||+..|+. ....+++.++|.+
T Consensus       304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g-L~~P~~G~i~~~g  352 (539)
T COG1123         304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG-LLPPSSGSIIFDG  352 (539)
T ss_pred             eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC-CCCCCCceEEEeC
Confidence            577754 47899999999999999999999987776 3344445666655

>PHA02542 41 41 helicase; Provisional

Probab=94.96  E-value=0.031  Score=55.51  Aligned_cols=46  Identities=13%  Similarity=0.214  Sum_probs=40.6

Q ss_pred             cccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544        173 QEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAK  218 (266)
Q Consensus       173 ~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~  218 (266)
                      ..-+.||+..+|-++  -+-+|+=+.|-|.+|+|||+++.+++.+.++
T Consensus       169 ~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~  216 (473)
T PHA02542        169 ANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQ  216 (473)
T ss_pred             CCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHh
Confidence            355789999999998  4889999999999999999999999998764

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=94.94  E-value=0.023  Score=56.74  Aligned_cols=32  Identities=31%  Similarity=0.430  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+||+++|.|++|+|||||+.-+..-
T Consensus       341 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~  372 (547)
T PRK10522        341 PINLTIKRGELLFLIGGNGSGKSTLAMLLTGL  372 (547)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44467889999999999999999999877753

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=94.93  E-value=0.019  Score=57.64  Aligned_cols=33  Identities=21%  Similarity=0.415  Sum_probs=28.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|....
T Consensus       333 ~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~  365 (569)
T PRK10789        333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF  365 (569)
T ss_pred             CeeEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            344678899999999999999999998887643

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=94.92  E-value=0.017  Score=59.16  Aligned_cols=33  Identities=24%  Similarity=0.387  Sum_probs=28.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+.+-+|++++|.|++|+|||||+..+..-.
T Consensus       471 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~  503 (686)
T TIGR03797       471 DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE  503 (686)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444788999999999999999999999887643

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=94.92  E-value=0.022  Score=56.88  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=28.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+++-+|++++|.|++|+|||||+.-|..-.
T Consensus       358 ~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~  390 (576)
T TIGR02204       358 GLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY  390 (576)
T ss_pred             ceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            334789999999999999999999998877643

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PF05729 NACHT: NACHT domain

Probab=94.92  E-value=0.047  Score=44.29  Aligned_cols=42  Identities=21%  Similarity=0.394  Sum_probs=30.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHHHHhcCC-----cEEEEEeecCCchH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVAKAHG-----GYSVFAGVGERTRE  235 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~-----~v~V~alIGER~rE  235 (266)
                      -+.|.|++|+|||+++..++..+...+.     .+++|.-.++....
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   48 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS   48 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence            3678999999999999999988765432     24555555555543

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=94.91  E-value=0.018  Score=59.19  Aligned_cols=32  Identities=25%  Similarity=0.457  Sum_probs=27.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|..-
T Consensus       483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl  514 (694)
T TIGR03375       483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL  514 (694)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            44577889999999999999999999887764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=94.91  E-value=0.02  Score=56.31  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=28.1

Q ss_pred             Eeec-ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        182 VVDL-LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       182 aID~-L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ++|- =+++-+|+.++|.|++|+|||||+..|+.
T Consensus        18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G   51 (490)
T PRK10938         18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAG   51 (490)
T ss_pred             ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4433 47899999999999999999999987765

>TIGR03263 guanyl_kin guanylate kinase

Probab=94.89  E-value=0.022  Score=47.97  Aligned_cols=23  Identities=39%  Similarity=0.603  Sum_probs=21.2

Q ss_pred             CceeeeecCCCccHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |+.+.|.|++|+|||||+..|++
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~   23 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLE   23 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHc
Confidence            67899999999999999998876

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=94.88  E-value=0.026  Score=56.78  Aligned_cols=33  Identities=30%  Similarity=0.462  Sum_probs=28.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+++-+|++++|.|++|+|||||+.-+....
T Consensus       358 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~  390 (574)
T PRK11160        358 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW  390 (574)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344778899999999999999999999887753

>PRK08233 hypothetical protein; Provisional

Probab=94.87  E-value=0.026  Score=47.18  Aligned_cols=26  Identities=31%  Similarity=0.325  Sum_probs=22.1

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ++.-++|.|++|+|||||+..++...
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l   27 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKL   27 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhC
Confidence            35678999999999999999998753

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=94.87  E-value=0.02  Score=57.38  Aligned_cols=34  Identities=26%  Similarity=0.573  Sum_probs=28.7

Q ss_pred             eEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+++ .=+++-.|++++|.|++|+|||||+..|+.
T Consensus        21 ~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G   55 (556)
T PRK11819         21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG   55 (556)
T ss_pred             eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3453 447899999999999999999999987765

>PF12846 AAA_10: AAA-like domain

Probab=94.84  E-value=0.065  Score=47.78  Aligned_cols=44  Identities=20%  Similarity=0.363  Sum_probs=32.3

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE  242 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~  242 (266)
                      +.|+|.+|+|||+++..++.........++||    ....|...+.+.
T Consensus         4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~----D~~g~~~~~~~~   47 (304)
T PF12846_consen    4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF----DPKGDYSPLARA   47 (304)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE----cCCchHHHHHHh
Confidence            67999999999999999988665443224444    666777776655

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=94.84  E-value=0.021  Score=55.50  Aligned_cols=31  Identities=29%  Similarity=0.479  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|..
T Consensus        21 ~vs~~i~~Geiv~liGpNGaGKSTLLk~LaG   51 (402)
T PRK09536         21 GVDLSVREGSLVGLVGPNGAGKTTLLRAING   51 (402)
T ss_pred             eeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence            3346788999999999999999999998865

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=94.83  E-value=0.02  Score=56.43  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        19 ~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G   49 (500)
T TIGR02633        19 GIDLEVRPGECVGLCGENGAGKSTLMKILSG   49 (500)
T ss_pred             ceEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3457899999999999999999999987764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=94.82  E-value=0.021  Score=56.79  Aligned_cols=32  Identities=25%  Similarity=0.482  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        27 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~   58 (529)
T PRK15134         27 DVSLQIEAGETLALVGESGSGKSVTALSILRL   58 (529)
T ss_pred             ceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            44577889999999999999999999877653

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=94.80  E-value=0.024  Score=49.28  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=22.9

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ...+.-+.|.|++|+|||+|+..+++.
T Consensus        35 ~~~~~~lll~G~~G~GKT~la~~~~~~   61 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLLQAACAA   61 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            345677889999999999999988875

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK08506 replicative DNA helicase; Provisional

Probab=94.79  E-value=0.037  Score=54.85  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=38.8

Q ss_pred             cccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544        175 ILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAK  218 (266)
Q Consensus       175 ~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~  218 (266)
                      -+.||+..+|-++ -+-+|+=+.|-|.+|+|||+|+.+++.+.++
T Consensus       174 Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~  218 (472)
T PRK08506        174 GLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALN  218 (472)
T ss_pred             cccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHh
Confidence            4889999999986 3778999999999999999999999998654

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.78  E-value=0.027  Score=50.65  Aligned_cols=31  Identities=29%  Similarity=0.448  Sum_probs=26.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.-+.|..|+-+-+.|+||||||||+.-++-
T Consensus        23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             ccceeecCCCEEEEEcCCCccHHHHHHHHhc
Confidence            5567899999999999999999999975543

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=94.77  E-value=0.025  Score=56.32  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|++++|.|++|+|||||+.-|..-
T Consensus       350 ~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl  381 (571)
T TIGR02203       350 SISLVIEPGETVALVGRSGSGKSTLVNLIPRF  381 (571)
T ss_pred             CeeEEecCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            44567889999999999999999999877664

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=94.76  E-value=0.02  Score=57.07  Aligned_cols=33  Identities=18%  Similarity=0.326  Sum_probs=28.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+.+-+|++++|+|++|+|||||+..++...
T Consensus       336 ~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  368 (544)
T TIGR01842       336 GISFRLQAGEALAIIGPSGSGKSTLARLIVGIW  368 (544)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455778899999999999999999998887643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=94.75  E-value=0.023  Score=56.58  Aligned_cols=31  Identities=32%  Similarity=0.594  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|+|++|+|||||+..|+-
T Consensus       337 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G  367 (530)
T PRK15064        337 NLNLLLEAGERLAIIGENGVGKTTLLRTLVG  367 (530)
T ss_pred             CcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4557899999999999999999999987764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=94.73  E-value=0.023  Score=57.89  Aligned_cols=35  Identities=26%  Similarity=0.492  Sum_probs=29.8

Q ss_pred             eEe-ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .++ |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus        30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl   65 (623)
T PRK10261         30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL   65 (623)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence            455 45678999999999999999999999988754

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=94.71  E-value=0.024  Score=56.75  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=28.0

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .=+.+-+|++++|.|++|+|||||+.-+.+-.
T Consensus       348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~  379 (567)
T COG1132         348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY  379 (567)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            44558999999999999999999999888754

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=94.70  E-value=0.022  Score=56.35  Aligned_cols=30  Identities=27%  Similarity=0.396  Sum_probs=26.8

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   53 (506)
T PRK13549         24 VSLKVRAGEIVSLCGENGAGKSTLMKVLSG   53 (506)
T ss_pred             eeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence            457789999999999999999999987765

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=94.70  E-value=0.082  Score=45.58  Aligned_cols=49  Identities=29%  Similarity=0.501  Sum_probs=31.1

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHh
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE  245 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~  245 (266)
                      +.+|+-+.|+|++|+|||.|+..+++.... .+--+.|.-       +.++++++..
T Consensus        44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~-------~~~L~~~l~~   92 (178)
T PF01695_consen   44 IENGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFIT-------ASDLLDELKQ   92 (178)
T ss_dssp             -SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEE-------HHHHHHHHHC
T ss_pred             cccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEee-------cCceeccccc
Confidence            347888999999999999999999886543 333344432       3455555543

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK09165 replicative DNA helicase; Provisional

Probab=94.70  E-value=0.051  Score=54.26  Aligned_cols=46  Identities=30%  Similarity=0.302  Sum_probs=40.4

Q ss_pred             ccccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544        174 EILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKA  219 (266)
Q Consensus       174 e~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~  219 (266)
                      .-+.||+..+|-++ -+.+|+=+.|-|.+|+|||+|+.+++.|.+..
T Consensus       198 ~gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~  244 (497)
T PRK09165        198 SGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKA  244 (497)
T ss_pred             CcccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHh
Confidence            45789999999987 58899999999999999999999999887643

>PRK05595 replicative DNA helicase; Provisional

Probab=94.69  E-value=0.047  Score=53.44  Aligned_cols=47  Identities=19%  Similarity=0.325  Sum_probs=39.6

Q ss_pred             ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcC
Q psy17544        174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAH  220 (266)
Q Consensus       174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~  220 (266)
                      .-+.||+..+|-++- +.+|+=+.|=|.+|+|||+++.+++.+.+..+
T Consensus       182 ~gi~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~  229 (444)
T PRK05595        182 TGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALRE  229 (444)
T ss_pred             CcccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHc
Confidence            357899999999864 77888888999999999999999998765443

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=94.68  E-value=0.029  Score=48.58  Aligned_cols=54  Identities=28%  Similarity=0.437  Sum_probs=33.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHHHHhcC--CcEEEEEeecCCchHHHHHHHHhHhcCc
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVAKAH--GGYSVFAGVGERTREGNDLYHEMIESGV  248 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a~~~--~~v~V~alIGER~rEv~ef~~~l~~~gv  248 (266)
                      |+.|+|+||+||||++..|++..---|  -+...-+.+-++ .|.....+.+.+.|-
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~-t~lg~~~k~~i~~g~   57 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER-TELGEEIKKYIDKGE   57 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC-ChHHHHHHHHHHcCC
Confidence            789999999999999999987521111  012223444444 566666666554443

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=94.68  E-value=0.023  Score=56.19  Aligned_cols=30  Identities=27%  Similarity=0.426  Sum_probs=26.9

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus       282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~G  311 (510)
T PRK09700        282 ISFSVCRGEILGFAGLVGSGRTELMNCLFG  311 (510)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            456789999999999999999999998775

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=94.68  E-value=0.028  Score=48.18  Aligned_cols=24  Identities=38%  Similarity=0.508  Sum_probs=21.5

Q ss_pred             cCceeeeecCCCccHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .|+.+.|.|++|+|||||+..|+.
T Consensus         1 ~g~~i~l~G~sGsGKsTl~~~l~~   24 (186)
T PRK10078          1 MGKLIWLMGPSGSGKDSLLAALRQ   24 (186)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            478899999999999999998865

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=94.67  E-value=0.053  Score=50.09  Aligned_cols=45  Identities=31%  Similarity=0.468  Sum_probs=30.8

Q ss_pred             eecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544        183 VDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  227 (266)
Q Consensus       183 ID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a  227 (266)
                      ++.+.| .|+..++||-|++|+|||||+..+++...+...-+-|++
T Consensus        19 l~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlA   64 (266)
T PF03308_consen   19 LKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLA   64 (266)
T ss_dssp             HHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             HHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEE
Confidence            334444 478889999999999999999999988765322255543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=94.65  E-value=0.024  Score=58.01  Aligned_cols=31  Identities=35%  Similarity=0.598  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|.|+.|+|||||+..|+.
T Consensus       330 ~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G  360 (638)
T PRK10636        330 SIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG  360 (638)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456889999999999999999999997775

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=94.65  E-value=0.024  Score=58.99  Aligned_cols=32  Identities=31%  Similarity=0.520  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.|-.||+++|+|.+|+|||||+..+..-
T Consensus       491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl  522 (709)
T COG2274         491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL  522 (709)
T ss_pred             ceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34467999999999999999999999987653

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=94.64  E-value=0.033  Score=46.99  Aligned_cols=24  Identities=29%  Similarity=0.356  Sum_probs=21.3

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.+.|.|++|+|||||+..|+..
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999999988775

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=94.64  E-value=0.025  Score=54.98  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|..-
T Consensus        46 ~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl   77 (400)
T PRK10070         46 DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL   77 (400)
T ss_pred             eEEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence            44567889999999999999999999877653

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=94.64  E-value=0.03  Score=53.11  Aligned_cols=77  Identities=23%  Similarity=0.400  Sum_probs=50.8

Q ss_pred             cccccccceEeeccccc---ccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE----------------------
Q psy17544        173 QEILVTGIKVVDLLAPY---AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA----------------------  227 (266)
Q Consensus       173 ~e~l~TGIraID~L~pi---gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a----------------------  227 (266)
                      .+.+.||+.++|..++.   -+|.=+=|+|++++|||+|+..++++..+. +..++|.                      
T Consensus        31 ~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~-g~~~a~ID~e~~ld~~~a~~lGvdl~rll  109 (322)
T PF00154_consen   31 IEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ-GGICAFIDAEHALDPEYAESLGVDLDRLL  109 (322)
T ss_dssp             S-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T-EEEEEESSS---HHHHHHTT--GGGEE
T ss_pred             cceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc-cceeEEecCcccchhhHHHhcCccccceE
Confidence            36789999999999983   478888999999999999999888865433 2222222                      


Q ss_pred             -eecCCchHHHHHHHHhHhcCccc
Q psy17544        228 -GVGERTREGNDLYHEMIESGVIS  250 (266)
Q Consensus       228 -lIGER~rEv~ef~~~l~~~gvl~  250 (266)
                       .--..+++.-+..+.+.++|..+
T Consensus       110 v~~P~~~E~al~~~e~lirsg~~~  133 (322)
T PF00154_consen  110 VVQPDTGEQALWIAEQLIRSGAVD  133 (322)
T ss_dssp             EEE-SSHHHHHHHHHHHHHTTSES
T ss_pred             EecCCcHHHHHHHHHHHhhccccc
Confidence             11234566667777777777654

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=94.61  E-value=0.052  Score=48.33  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             eeeecCCCccHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +||-|++|+|||||+..|....
T Consensus         2 igI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHH
Confidence            6899999999999999887654

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=94.61  E-value=0.024  Score=56.05  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~G   53 (510)
T PRK09700         23 SVNLTVYPGEIHALLGENGAGKSTLMKVLSG   53 (510)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence            5567889999999999999999999987765

>PRK06217 hypothetical protein; Validated

Probab=94.60  E-value=0.032  Score=47.68  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=21.0

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +||.|+|.+|+|||||+..++..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999875

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=94.60  E-value=0.024  Score=55.82  Aligned_cols=34  Identities=32%  Similarity=0.513  Sum_probs=28.8

Q ss_pred             eEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++ |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus       274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G  308 (500)
T TIGR02633       274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG  308 (500)
T ss_pred             cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhC
Confidence            345 3456899999999999999999999998875

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK08760 replicative DNA helicase; Provisional

Probab=94.60  E-value=0.047  Score=54.20  Aligned_cols=45  Identities=22%  Similarity=0.204  Sum_probs=39.5

Q ss_pred             cccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544        175 ILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKA  219 (266)
Q Consensus       175 ~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~  219 (266)
                      -+.||+..+|-++ -+-+|+=+-|-|.+|+|||+|+.+++.+.+..
T Consensus       211 Gi~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~  256 (476)
T PRK08760        211 GLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK  256 (476)
T ss_pred             cccCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh
Confidence            4789999999986 47889999999999999999999999987643

>PRK05480 uridine/cytidine kinase; Provisional

Probab=94.59  E-value=0.033  Score=48.37  Aligned_cols=27  Identities=33%  Similarity=0.533  Sum_probs=23.9

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .++..++|.|++|+|||||+..|....
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            478899999999999999999888754

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=94.59  E-value=0.031  Score=43.71  Aligned_cols=21  Identities=33%  Similarity=0.646  Sum_probs=19.6

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |++|+|.+|+|||||+..+..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            789999999999999998885

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=94.58  E-value=0.03  Score=48.50  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=27.8

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .-+||.+|.-+-|.||+|+|||||+.-|+-..
T Consensus        21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~L   52 (213)
T COG4136          21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGAL   52 (213)
T ss_pred             eeEEecCCcEEEEECCCCccHHHHHHHHHhhc
Confidence            45789999999999999999999998776543

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=94.58  E-value=0.021  Score=57.21  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=27.7

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .=+.+-+|++++|+|++|+|||||+..|.+..
T Consensus       361 vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~  392 (555)
T TIGR01194       361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY  392 (555)
T ss_pred             ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34678899999999999999999999887643

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=94.57  E-value=0.028  Score=58.09  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=28.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+.+-+||+++|.|++|+|||||+.-|.+-.
T Consensus       499 ~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~  531 (711)
T TIGR00958       499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY  531 (711)
T ss_pred             CceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            555789999999999999999999998777643

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.57  E-value=0.028  Score=50.92  Aligned_cols=30  Identities=33%  Similarity=0.476  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii  213 (266)
                      |.-+.+.+|++++|+|++|+|||||+..+.
T Consensus        22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~   51 (235)
T COG1122          22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLN   51 (235)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence            667789999999999999999999998653

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=94.56  E-value=0.027  Score=56.39  Aligned_cols=31  Identities=32%  Similarity=0.605  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|+.
T Consensus        23 ~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G   53 (552)
T TIGR03719        23 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAG   53 (552)
T ss_pred             CceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4447899999999999999999999987764

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=94.51  E-value=0.038  Score=43.28  Aligned_cols=22  Identities=41%  Similarity=0.508  Sum_probs=19.4

Q ss_pred             eeeecCCCccHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +.|.|++|+|||+++..+++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            5789999999999999998853

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=94.50  E-value=0.027  Score=55.47  Aligned_cols=31  Identities=23%  Similarity=0.313  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        16 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~G   46 (491)
T PRK10982         16 NVNLKVRPHSIHALMGENGAGKSTLLKCLFG   46 (491)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence            3456788999999999999999999987765

>PTZ00243 ABC transporter; Provisional

Probab=94.49  E-value=0.032  Score=62.65  Aligned_cols=45  Identities=27%  Similarity=0.456  Sum_probs=33.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV  229 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI  229 (266)
                      |.=+.+.+|||++|.|.+|+|||||+..+.+-. +.+.+-+.+-++
T Consensus      1328 ~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I~IDG~ 1372 (1560)
T PTZ00243       1328 GVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEIRVNGR 1372 (1560)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCE
Confidence            445789999999999999999999999887743 333344444433

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=94.48  E-value=0.03  Score=56.47  Aligned_cols=31  Identities=32%  Similarity=0.567  Sum_probs=28.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.-+.+-.|+|+||+|..|+|||||+..|+.
T Consensus        21 ~~~l~~~~G~riGLvG~NGaGKSTLLkilaG   51 (530)
T COG0488          21 NVSLTLNPGERIGLVGRNGAGKSTLLKILAG   51 (530)
T ss_pred             CCcceeCCCCEEEEECCCCCCHHHHHHHHcC
Confidence            6778899999999999999999999986664

>PRK14531 adenylate kinase; Provisional

Probab=94.47  E-value=0.038  Score=47.26  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +|+.|+|++|+||||+...++...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999887754

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=94.46  E-value=0.028  Score=57.40  Aligned_cols=30  Identities=37%  Similarity=0.613  Sum_probs=26.7

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|++++|.|+.|+|||||+..|+.
T Consensus       338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G  367 (635)
T PRK11147        338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLG  367 (635)
T ss_pred             cEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            446889999999999999999999987765

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=94.44  E-value=0.031  Score=54.09  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=29.0

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -|.=+.+-+|+..+|+|++|+|||||+..|...
T Consensus        41 ~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl   73 (382)
T TIGR03415        41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL   73 (382)
T ss_pred             EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            466688999999999999999999999877653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=94.43  E-value=0.027  Score=56.90  Aligned_cols=32  Identities=31%  Similarity=0.403  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|...
T Consensus       353 ~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~  384 (585)
T TIGR01192       353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV  384 (585)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHccC
Confidence            34466889999999999999999999887764

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=94.43  E-value=0.031  Score=55.45  Aligned_cols=34  Identities=32%  Similarity=0.485  Sum_probs=28.7

Q ss_pred             eEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+++ .=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus       298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G  332 (520)
T TIGR03269       298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG  332 (520)
T ss_pred             eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3453 456899999999999999999999987765

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK09183 transposase/IS protein; Provisional

Probab=94.42  E-value=0.048  Score=49.79  Aligned_cols=33  Identities=33%  Similarity=0.414  Sum_probs=27.0

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.+.-+.+|+.+.|+|++|+|||+|+..+++.
T Consensus        93 L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~  125 (259)
T PRK09183         93 LRSLSFIERNENIVLLGPSGVGKTHLAIALGYE  125 (259)
T ss_pred             HhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            333333788999999999999999999988764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=94.41  E-value=0.03  Score=55.51  Aligned_cols=31  Identities=26%  Similarity=0.427  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        29 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G   59 (510)
T PRK15439         29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAG   59 (510)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4456788999999999999999999987764

>PRK06893 DNA replication initiation factor; Validated

Probab=94.41  E-value=0.057  Score=48.09  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.|+|++|+|||+|+..+++..
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~   63 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHY   63 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999999888754

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=94.39  E-value=0.033  Score=51.77  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=29.8

Q ss_pred             ceEe-ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        180 IKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       180 IraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..++ |.=+.+.+|+-.|+.|+.|+|||||+.+|+-.
T Consensus        18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl   54 (293)
T COG1131          18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL   54 (293)
T ss_pred             CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4455 34478999999999999999999999988764

>PRK14530 adenylate kinase; Provisional

Probab=94.38  E-value=0.043  Score=48.09  Aligned_cols=26  Identities=27%  Similarity=0.383  Sum_probs=22.5

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .|-++.|+|++|+||||++..++...
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~~   27 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEEF   27 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998754

>PRK05642 DNA replication initiation factor; Validated

Probab=94.37  E-value=0.067  Score=47.89  Aligned_cols=55  Identities=22%  Similarity=0.375  Sum_probs=32.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcc
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI  249 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl  249 (266)
                      -+-|.|++|+|||.|++.+++.. ...+.-++|.-..+=.....+|++.+.+..++
T Consensus        47 ~l~l~G~~G~GKTHLl~a~~~~~-~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~L  101 (234)
T PRK05642         47 LIYLWGKDGVGRSHLLQAACLRF-EQRGEPAVYLPLAELLDRGPELLDNLEQYELV  101 (234)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEE
Confidence            35788999999999998887643 22222455544433222334455555544443

>TIGR00750 lao LAO/AO transport system ATPase

Probab=94.36  E-value=0.078  Score=49.23  Aligned_cols=31  Identities=23%  Similarity=0.396  Sum_probs=26.9

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      ...+++..++|.|++|+|||||+..++....
T Consensus        29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~   59 (300)
T TIGR00750        29 PYTGNAHRVGITGTPGAGKSTLLEALGMELR   59 (300)
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3577899999999999999999999887543

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=94.35  E-value=0.03  Score=55.28  Aligned_cols=31  Identities=32%  Similarity=0.451  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus       270 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G  300 (501)
T PRK10762        270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYG  300 (501)
T ss_pred             cceEEEcCCcEEEEecCCCCCHHHHHHHHhC
Confidence            3446889999999999999999999987764

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=94.35  E-value=0.03  Score=56.32  Aligned_cols=32  Identities=28%  Similarity=0.391  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|++++|.|++|+|||||+.-+..-
T Consensus       353 ~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl  384 (588)
T PRK13657        353 DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV  384 (588)
T ss_pred             ceeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34467889999999999999999999877653

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=94.34  E-value=0.043  Score=55.44  Aligned_cols=33  Identities=30%  Similarity=0.422  Sum_probs=28.7

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =|.=+++-+||++.|.|.||+|||||+..+..-
T Consensus       338 ~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~  370 (559)
T COG4988         338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF  370 (559)
T ss_pred             CCceeEecCCcEEEEECCCCCCHHHHHHHHhCc
Confidence            366788999999999999999999999877653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=94.31  E-value=0.032  Score=55.21  Aligned_cols=35  Identities=34%  Similarity=0.517  Sum_probs=29.6

Q ss_pred             ceEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        180 IKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       180 IraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .++++ .=+++-+|+.++|+|++|+|||||+..|+.
T Consensus       275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G  310 (506)
T PRK13549        275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG  310 (506)
T ss_pred             cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhC
Confidence            34554 447899999999999999999999998875

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=94.30  E-value=0.033  Score=54.75  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus       278 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G  308 (490)
T PRK10938        278 NLSWQVNPGEHWQIVGPNGAGKSTLLSLITG  308 (490)
T ss_pred             eceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            4456788999999999999999999988765

>PRK08840 replicative DNA helicase; Provisional

Probab=94.30  E-value=0.05  Score=53.90  Aligned_cols=46  Identities=22%  Similarity=0.186  Sum_probs=40.3

Q ss_pred             ccccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544        174 EILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKA  219 (266)
Q Consensus       174 e~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~  219 (266)
                      .-+.||+..+|-++ .+-+|+=+-|-|.+|+|||+++.+++.|.+..
T Consensus       198 ~gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~  244 (464)
T PRK08840        198 TGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD  244 (464)
T ss_pred             CCcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh
Confidence            35799999999986 68899999999999999999999999987643

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=94.28  E-value=0.077  Score=50.08  Aligned_cols=28  Identities=36%  Similarity=0.301  Sum_probs=25.3

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      .+|+.+++.|++|+||||++..++....
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~  139 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYK  139 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5799999999999999999999988654

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=94.28  E-value=0.034  Score=56.03  Aligned_cols=31  Identities=32%  Similarity=0.547  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+|++|.|+.|+|||||+..|+.
T Consensus       340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g  370 (530)
T COG0488         340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG  370 (530)
T ss_pred             CceEEecCCCEEEEECCCCCCHHHHHHHHhh
Confidence            5556788999999999999999999998755

>PRK07004 replicative DNA helicase; Provisional

Probab=94.27  E-value=0.071  Score=52.72  Aligned_cols=46  Identities=26%  Similarity=0.234  Sum_probs=40.2

Q ss_pred             cccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcC
Q psy17544        175 ILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAH  220 (266)
Q Consensus       175 ~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~  220 (266)
                      -+.||+.-+|-++- +-+|+=+.|-|.+|+|||+++.+++.+.+..+
T Consensus       195 gi~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~  241 (460)
T PRK07004        195 GTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY  241 (460)
T ss_pred             CccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHc
Confidence            57899999999864 88999999999999999999999998876433

>PRK13409 putative ATPase RIL; Provisional

Probab=94.26  E-value=0.045  Score=55.68  Aligned_cols=33  Identities=27%  Similarity=0.345  Sum_probs=28.7

Q ss_pred             EeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++.+..+-+|+.+||+|+.|+|||||+..|+-
T Consensus        89 ~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G  121 (590)
T PRK13409         89 KLYGLPIPKEGKVTGILGPNGIGKTTAVKILSG  121 (590)
T ss_pred             eEecCCcCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            566666889999999999999999999987654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=94.25  E-value=0.036  Score=56.56  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             ceEeec-ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        180 IKVVDL-LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       180 IraID~-L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+++|. =+.+-+|+.++|.|++|+|||||+..|+.
T Consensus       337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G  372 (623)
T PRK10261        337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR  372 (623)
T ss_pred             eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            345544 46899999999999999999999987765

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=94.23  E-value=0.045  Score=56.28  Aligned_cols=33  Identities=30%  Similarity=0.366  Sum_probs=27.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+.+-+||+++|.|++|+|||||+..|....
T Consensus       475 ~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~  507 (694)
T TIGR01846       475 NLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY  507 (694)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            334668899999999999999999999887643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=94.23  E-value=0.031  Score=55.23  Aligned_cols=30  Identities=30%  Similarity=0.501  Sum_probs=26.7

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|++++|.|+.|+|||||+..|+.
T Consensus       272 isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G  301 (501)
T PRK11288        272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYG  301 (501)
T ss_pred             eeEEEeCCcEEEEEcCCCCCHHHHHHHHcC
Confidence            336899999999999999999999998765

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=94.23  E-value=0.033  Score=52.09  Aligned_cols=53  Identities=26%  Similarity=0.313  Sum_probs=39.3

Q ss_pred             eEeecccccccCceeeeecCCCccHHHHHHHHHHHHHhc-CCcEEEEEeecCCch
Q psy17544        181 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTR  234 (266)
Q Consensus       181 raID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~-~~~v~V~alIGER~r  234 (266)
                      .+-|.-+.|-+|++.|+.|+.|+||||++.|+.-- -.. +|.+-|-+.+=-|.+
T Consensus        39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl-l~p~~G~v~V~G~~Pf~~~   92 (325)
T COG4586          39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL-LLPTSGKVRVNGKDPFRRR   92 (325)
T ss_pred             hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc-cccCCCeEEecCcCcchhH
Confidence            56688999999999999999999999999987542 222 233555555555544

>PF13173 AAA_14: AAA domain

Probab=94.23  E-value=0.05  Score=43.80  Aligned_cols=44  Identities=27%  Similarity=0.236  Sum_probs=29.2

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN  237 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~  237 (266)
                      +-+.|.|+.|+|||||+.+++.... ....+..+-+-..+.++..
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~   46 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLA   46 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHh
Confidence            4578999999999999999997643 1112444445555554433

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=94.22  E-value=0.071  Score=48.63  Aligned_cols=43  Identities=26%  Similarity=0.294  Sum_probs=29.3

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN  237 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~  237 (266)
                      -|+.|.|++|+|||+|+..+..+....-  -.||....+...+.-
T Consensus        14 fr~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~~~n~~~~   56 (241)
T PF04665_consen   14 FRMVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITPEYNNEYY   56 (241)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEecCCchhhh
Confidence            4889999999999999999988643221  244444445555443

This is thought to be an ATPase involved in viral DNA packaging [].

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=94.22  E-value=0.023  Score=48.82  Aligned_cols=33  Identities=36%  Similarity=0.506  Sum_probs=28.6

Q ss_pred             EeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+|.|...-+++...++|.||||||||+..+..
T Consensus        25 g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~   57 (161)
T PF03193_consen   25 GIEELKELLKGKTSVLLGQSGVGKSSLINALLP   57 (161)
T ss_dssp             THHHHHHHHTTSEEEEECSTTSSHHHHHHHHHT
T ss_pred             CHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence            366777788899999999999999999988765

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=94.20  E-value=0.035  Score=54.85  Aligned_cols=31  Identities=29%  Similarity=0.404  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        22 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   52 (501)
T PRK11288         22 DISFDCRAGQVHALMGENGAGKSTLLKILSG   52 (501)
T ss_pred             eeeEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4447899999999999999999999987765

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=94.16  E-value=0.048  Score=46.85  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=22.2

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .|+.+.|+|++|+|||||+..++.-
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~   26 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAAL   26 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4889999999999999999988763

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.15  E-value=0.08  Score=51.22  Aligned_cols=45  Identities=33%  Similarity=0.514  Sum_probs=35.0

Q ss_pred             cccccccceEeecc-cccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        173 QEILVTGIKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       173 ~e~l~TGIraID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      .+.+..-+.+++.. ..+-+|+-++++|++|+||||++..|+....
T Consensus       117 ~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~  162 (374)
T PRK14722        117 QSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV  162 (374)
T ss_pred             HHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44555556666655 3477899999999999999999999987543

>PRK07773 replicative DNA helicase; Validated

Probab=94.09  E-value=0.084  Score=56.24  Aligned_cols=48  Identities=23%  Similarity=0.276  Sum_probs=41.7

Q ss_pred             ccccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhcCC
Q psy17544        174 EILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG  221 (266)
Q Consensus       174 e~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~  221 (266)
                      ..+.||+..+|-++ -+-+|+=+.|-|.+|+|||+++.+++.|.+..++
T Consensus       198 ~Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~  246 (886)
T PRK07773        198 RGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHR  246 (886)
T ss_pred             CCccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcC
Confidence            46899999999987 3779999999999999999999999998765443

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=94.07  E-value=0.086  Score=44.99  Aligned_cols=50  Identities=18%  Similarity=0.276  Sum_probs=35.5

Q ss_pred             eeeecCCCccHHHHHHHHHHHHH------hcCCcEEEEEeecCCchHHHHHHHHhHh
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVA------KAHGGYSVFAGVGERTREGNDLYHEMIE  245 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a------~~~~~v~V~alIGER~rEv~ef~~~l~~  245 (266)
                      ..|-||+|+|||+++..++....      ..+.. --+..+......+.++++.|.+
T Consensus        20 ~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~-~~il~~~~sN~avd~~~~~l~~   75 (236)
T PF13086_consen   20 TLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRG-KKILVVSPSNAAVDNILERLKK   75 (236)
T ss_dssp             EEEE-STTSSHHHHHHHHHHHH-------HCCCS-S-EEEEESSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCChHHHHHHHHHHhccchhhhhhhcc-ccceeecCCchhHHHHHHHHHh
Confidence            56889999999999988888651      12212 2234567788899999999988

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=94.06  E-value=0.04  Score=54.81  Aligned_cols=35  Identities=29%  Similarity=0.451  Sum_probs=29.1

Q ss_pred             eEee-cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        181 KVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       181 raID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .++| .=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus       300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl  335 (529)
T PRK15134        300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL  335 (529)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            3454 4468999999999999999999999887753

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=94.05  E-value=0.056  Score=50.83  Aligned_cols=54  Identities=22%  Similarity=0.266  Sum_probs=37.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcc
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI  249 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl  249 (266)
                      -+.+|||+|.|||||++-|++-.-.+  -.+.=+-.=||..+..-++..+++.+|+
T Consensus        54 HvLl~GPPGlGKTTLA~IIA~Emgvn--~k~tsGp~leK~gDlaaiLt~Le~~DVL  107 (332)
T COG2255          54 HVLLFGPPGLGKTTLAHIIANELGVN--LKITSGPALEKPGDLAAILTNLEEGDVL  107 (332)
T ss_pred             eEEeeCCCCCcHHHHHHHHHHHhcCC--eEecccccccChhhHHHHHhcCCcCCeE
Confidence            35689999999999998666543211  1233334557888888877777777765

>cd04155 Arl3 Arl3 subfamily

Probab=94.04  E-value=0.044  Score=45.18  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=22.6

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -.+--|++|+|++|+|||+|+..+...
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcC
Confidence            344568999999999999999988763

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=93.99  E-value=0.056  Score=46.43  Aligned_cols=28  Identities=32%  Similarity=0.472  Sum_probs=24.3

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +-+|+.++|.|++|+|||||+..++...
T Consensus        22 v~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          22 VEARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             HhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            5679999999999999999998887643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=93.99  E-value=0.054  Score=47.02  Aligned_cols=27  Identities=15%  Similarity=0.108  Sum_probs=23.7

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+|.++.|.|+.|+|||||+.+++.+
T Consensus        26 l~~~~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          26 LGSGRLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             EcCCeEEEEECCCCCccHHHHHHHHHH
Confidence            446899999999999999999988744

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=93.97  E-value=0.038  Score=49.73  Aligned_cols=32  Identities=31%  Similarity=0.453  Sum_probs=29.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.-|..-+||=.||+|+.|+||||++.+|+.-
T Consensus        20 dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl   51 (245)
T COG4555          20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATL   51 (245)
T ss_pred             heeEEeccceEEEEEcCCCCCchhHHHHHHHh
Confidence            67788999999999999999999999988763

>PLN03232 ABC transporter C family member; Provisional

Probab=93.97  E-value=0.048  Score=61.05  Aligned_cols=33  Identities=27%  Similarity=0.427  Sum_probs=28.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+.+-+|+|++|.|.+|+|||||+..+.+-.
T Consensus      1254 ~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232       1254 GLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444678899999999999999999999888743

>PHA00729 NTP-binding motif containing protein

Probab=93.95  E-value=0.026  Score=51.00  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=24.7

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.|.+.+. ..+.|+|.+|+|||+|+..+++.
T Consensus         9 ~~~l~~~~f-~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729          9 VSAYNNNGF-VSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             HHHHhcCCe-EEEEEECCCCCCHHHHHHHHHHH
Confidence            334444444 48999999999999999998875

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=93.93  E-value=0.13  Score=46.09  Aligned_cols=46  Identities=15%  Similarity=0.265  Sum_probs=33.4

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHH-hcCCcEEEEEeecCCchH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTRE  235 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a-~~~~~v~V~alIGER~rE  235 (266)
                      ...+.++|.|.+|+|||+|+.++++... +.+-+.+++.-.+.....
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~   63 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL   63 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC
T ss_pred             CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc
Confidence            4567889999999999999999987622 222246777777776655

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK05636 replicative DNA helicase; Provisional

Probab=93.93  E-value=0.1  Score=52.31  Aligned_cols=47  Identities=28%  Similarity=0.389  Sum_probs=39.9

Q ss_pred             ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcC
Q psy17544        174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAH  220 (266)
Q Consensus       174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~  220 (266)
                      .-+.||+..+|-++. +-+|+=+.|-|.+|+|||+|+.+++.+.+..+
T Consensus       246 ~Gi~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~  293 (505)
T PRK05636        246 TGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKH  293 (505)
T ss_pred             CceecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            358999999999864 77889999999999999999999998865433

>PLN03073 ABC transporter F family; Provisional

Probab=93.91  E-value=0.042  Score=57.23  Aligned_cols=31  Identities=19%  Similarity=0.381  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|++++|+|++|+|||||+..|+.
T Consensus       527 ~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~G  557 (718)
T PLN03073        527 NLNFGIDLDSRIAMVGPNGIGKSTILKLISG  557 (718)
T ss_pred             ccEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            3447899999999999999999999987765

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=93.88  E-value=0.14  Score=41.28  Aligned_cols=42  Identities=29%  Similarity=0.262  Sum_probs=28.3

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH  241 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~  241 (266)
                      +.|.|++|+|||+|+..+++.. .    ..++..-+-..-+..+++-
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~-~----~~~~~i~~~~~~~~~dl~g   43 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL-G----RPVIRINCSSDTTEEDLIG   43 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH-T----CEEEEEE-TTTSTHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-h----cceEEEEecccccccccee
Confidence            5789999999999999998854 2    2333444445555556653

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=93.88  E-value=0.11  Score=51.80  Aligned_cols=46  Identities=35%  Similarity=0.532  Sum_probs=32.5

Q ss_pred             ccccceEeecc-cccccCceeeeecCCCccHHHHHHHHHHHHHhcCC
Q psy17544        176 LVTGIKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG  221 (266)
Q Consensus       176 l~TGIraID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~  221 (266)
                      +..-+++++.. ..+.+|+-++++|+.|+||||++..|+......++
T Consensus       239 l~~~l~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G  285 (484)
T PRK06995        239 LAKNLPVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG  285 (484)
T ss_pred             HHHHHhhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence            33333444322 34568999999999999999999999976543443

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=93.86  E-value=0.045  Score=54.96  Aligned_cols=31  Identities=32%  Similarity=0.602  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus       342 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G  372 (556)
T PRK11819        342 DLSFSLPPGGIVGIIGPNGAGKSTLFKMITG  372 (556)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4457789999999999999999999988764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=93.83  E-value=0.042  Score=54.50  Aligned_cols=30  Identities=30%  Similarity=0.407  Sum_probs=26.3

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus       282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G  311 (510)
T PRK15439        282 ISLEVRAGEILGLAGVVGAGRTELAETLYG  311 (510)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence            345788999999999999999999987764

>PRK06904 replicative DNA helicase; Validated

Probab=93.82  E-value=0.064  Score=53.26  Aligned_cols=46  Identities=26%  Similarity=0.248  Sum_probs=39.6

Q ss_pred             ccccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544        174 EILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKA  219 (266)
Q Consensus       174 e~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~  219 (266)
                      .-+.||+..+|-++ .+-+|+=+-|=|-+|+|||+++.+++.|.+..
T Consensus       202 ~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~  248 (472)
T PRK06904        202 TGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA  248 (472)
T ss_pred             CCccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh
Confidence            35789999999985 58889999899999999999999999987644

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=93.79  E-value=0.053  Score=46.64  Aligned_cols=21  Identities=48%  Similarity=0.862  Sum_probs=19.0

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +||.|++|+|||||+..|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PLN03130 ABC transporter C family member; Provisional

Probab=93.76  E-value=0.057  Score=60.95  Aligned_cols=45  Identities=24%  Similarity=0.434  Sum_probs=33.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV  229 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI  229 (266)
                      |.=+++-+|||+||.|.+|+|||||+..|.+-. +.+.+-+.+-++
T Consensus      1257 ~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I~IDG~ 1301 (1622)
T PLN03130       1257 GLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRILIDGC 1301 (1622)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCE
Confidence            445789999999999999999999999887743 333333444333

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=93.74  E-value=0.052  Score=43.63  Aligned_cols=22  Identities=45%  Similarity=0.813  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..++.+
T Consensus         3 ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           3 KLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999988864

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=93.73  E-value=0.11  Score=46.15  Aligned_cols=29  Identities=24%  Similarity=0.296  Sum_probs=24.6

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      -++...+||.|++|+|||||+..++....
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            36677899999999999999998887553

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=93.72  E-value=0.046  Score=54.80  Aligned_cols=31  Identities=32%  Similarity=0.577  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus       340 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G  370 (552)
T TIGR03719       340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITG  370 (552)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            3556789999999999999999999987764

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=93.71  E-value=0.055  Score=60.61  Aligned_cols=33  Identities=33%  Similarity=0.616  Sum_probs=28.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.=+.+-+|||++|.|.+|+|||||+..|.+-.
T Consensus      1237 ~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~ 1269 (1490)
T TIGR01271      1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL 1269 (1490)
T ss_pred             ccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence            444778899999999999999999999888754

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=93.71  E-value=0.054  Score=45.86  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|++|+||||++..|+..
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999988764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=93.64  E-value=0.071  Score=41.85  Aligned_cols=23  Identities=35%  Similarity=0.673  Sum_probs=19.6

Q ss_pred             eeeecCCCccHHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      +-|+|++|+|||+|+..+++...
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            34899999999999999887654

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=93.64  E-value=0.24  Score=45.75  Aligned_cols=31  Identities=35%  Similarity=0.568  Sum_probs=26.3

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNVAKA  219 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~  219 (266)
                      +.+|+.++|.|++|+||||++..++...+..
T Consensus       191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~  221 (282)
T TIGR03499       191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLE  221 (282)
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            3478899999999999999999999866443

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=93.63  E-value=0.023  Score=51.94  Aligned_cols=50  Identities=30%  Similarity=0.486  Sum_probs=38.4

Q ss_pred             ccceEee-cccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544        178 TGIKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  228 (266)
Q Consensus       178 TGIraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al  228 (266)
                      -|++|+| .=+.+-+|+..+|+||.|+|||||..-+.-. -+.+.+.+.|-+
T Consensus        15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~-~~P~~G~v~~~G   65 (250)
T COG0411          15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF-YKPSSGTVIFRG   65 (250)
T ss_pred             CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc-ccCCCceEEECC
Confidence            6888885 4578999999999999999999999755443 345555666654

>PF14516 AAA_35: AAA-like domain

Probab=93.61  E-value=0.17  Score=47.73  Aligned_cols=77  Identities=17%  Similarity=0.298  Sum_probs=52.6

Q ss_pred             ccccCcccccccccccccccccceEeeccccccc-CceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee---cC-C
Q psy17544        158 AIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAK-GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV---GE-R  232 (266)
Q Consensus       158 pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigk-GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI---GE-R  232 (266)
                      ++....|.+.+|+++++-+...         |.+ |+=+-|+|+.++|||+|+..+.+.. ...+-.+|+.=+   |. .
T Consensus         5 ~~~~~~~~Yi~R~~~e~~~~~~---------i~~~G~~~~I~apRq~GKTSll~~l~~~l-~~~~~~~v~id~~~~~~~~   74 (331)
T PF14516_consen    5 PLPLDSPFYIERPPAEQECYQE---------IVQPGSYIRIKAPRQMGKTSLLLRLLERL-QQQGYRCVYIDLQQLGSAI   74 (331)
T ss_pred             CCCCCCCcccCchHHHHHHHHH---------HhcCCCEEEEECcccCCHHHHHHHHHHHH-HHCCCEEEEEEeecCCCcc
Confidence            3455577788998777666554         344 9999999999999999999998764 334445555443   33 2


Q ss_pred             chHHHHHHHHhH
Q psy17544        233 TREGNDLYHEMI  244 (266)
Q Consensus       233 ~rEv~ef~~~l~  244 (266)
                      .....+|++.|-
T Consensus        75 ~~~~~~f~~~~~   86 (331)
T PF14516_consen   75 FSDLEQFLRWFC   86 (331)
T ss_pred             cCCHHHHHHHHH
Confidence            345666666653

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=93.61  E-value=0.053  Score=54.82  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        42 nVSfsI~~GEivgIiGpNGSGKSTLLkiLaG   72 (549)
T PRK13545         42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAG   72 (549)
T ss_pred             eeEEEEeCCCEEEEEcCCCCCHHHHHHHHhC
Confidence            4456788999999999999999999987765

>PRK08006 replicative DNA helicase; Provisional

Probab=93.57  E-value=0.086  Score=52.37  Aligned_cols=45  Identities=22%  Similarity=0.183  Sum_probs=39.3

Q ss_pred             cccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544        175 ILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKA  219 (266)
Q Consensus       175 ~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~  219 (266)
                      -+.||+..+|-++ -+-+|+=+-|=|.+|+|||+++.+++.|.+..
T Consensus       206 Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~  251 (471)
T PRK08006        206 GVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML  251 (471)
T ss_pred             cccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            4799999999864 78889999999999999999999999987643

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=93.56  E-value=0.061  Score=50.97  Aligned_cols=42  Identities=21%  Similarity=0.404  Sum_probs=29.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEE
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF  226 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~  226 (266)
                      |.-+-|--|+.++++|+||+|||||+..|+ +.-..+.+.++|
T Consensus        20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIA-GLe~p~~G~I~~   61 (345)
T COG1118          20 DISLDIKSGELVALLGPSGAGKSTLLRIIA-GLETPDAGRIRL   61 (345)
T ss_pred             cceeeecCCcEEEEECCCCCcHHHHHHHHh-CcCCCCCceEEE
Confidence            355567799999999999999999997554 332333344444

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=93.55  E-value=0.052  Score=54.22  Aligned_cols=38  Identities=16%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             cccccccc-eEe-ecccccccCceeeeecCCCccHHHHHH
Q psy17544        173 QEILVTGI-KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIM  210 (266)
Q Consensus       173 ~e~l~TGI-raI-D~L~pigkGQr~gIfgg~G~GKT~L~~  210 (266)
                      +.++++.. +++ |.-+.+-+|+-++|.|++|+|||||+.
T Consensus        11 ~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        11 KRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             chHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence            34444443 334 336689999999999999999999998

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=93.55  E-value=0.049  Score=53.61  Aligned_cols=28  Identities=25%  Similarity=0.387  Sum_probs=25.7

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.+.+|+.++|.|++|+|||||+..|+.
T Consensus       269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G  296 (491)
T PRK10982        269 FDLHKGEILGIAGLVGAKRTDIVETLFG  296 (491)
T ss_pred             EEEeCCcEEEEecCCCCCHHHHHHHHcC
Confidence            5799999999999999999999987764

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=93.52  E-value=0.081  Score=38.37  Aligned_cols=21  Identities=33%  Similarity=0.665  Sum_probs=19.0

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.|.|++|+||||++..+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999988875

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=93.52  E-value=0.12  Score=47.29  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=20.7

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+-+.|+|++|+|||+|+..+++.
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~   53 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANE   53 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999988764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=93.52  E-value=0.081  Score=44.46  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=20.6

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      --.+.|+|++|+||||++..++..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~   26 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEK   26 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999988764

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PTZ00301 uridine kinase; Provisional

Probab=93.51  E-value=0.11  Score=46.08  Aligned_cols=22  Identities=32%  Similarity=0.708  Sum_probs=19.3

Q ss_pred             eeeecCCCccHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +||-|+||+|||||+..|+...
T Consensus         6 IgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          6 IGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEECCCcCCHHHHHHHHHHHH
Confidence            7899999999999998887654

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=93.49  E-value=0.069  Score=41.77  Aligned_cols=23  Identities=39%  Similarity=0.627  Sum_probs=20.4

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |+++.|.+|+|||+|+..+..+.
T Consensus         3 ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999887653

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	266
2w6e_D	528	Low Resolution Structures Of Bovine Mitochondrial F		4e-85
1cow_D	482	Bovine Mitochondrial F1-Atpase Complexed With Aurov		5e-85
1nbm_D	480	The Structure Of Bovine F1-Atpase Covalently Inhibi		5e-85
1nbm_E	480	The Structure Of Bovine F1-Atpase Covalently Inhibi		5e-85
2xnd_D	467	Crystal Structure Of Bovine F1-C8 Sub-Complex Of At		6e-85
4asu_D	480	F1-Atpase In Which All Three Catalytic Sites Contai		7e-85
1mab_B	479	Rat Liver F1-Atpase Length = 479		1e-84
2xok_D	511	Refined Structure Of Yeast F1c10 Atpase Complex To		3e-66
3oeh_D	484	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		5e-66
3fks_D	484	Yeast F1 Atpase In The Absence Of Bound Nucleotides		6e-66
2hld_D	478	Crystal Structure Of Yeast Mitochondrial F1-Atpase		6e-66
4b2q_D	470	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		6e-66
4b2q_E	473	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		6e-66
2qe7_D	462	Crystal Structure Of The F1-Atpase From The Thermoa		6e-52
1sky_E	473	Crystal Structure Of The Nucleotide Free Alpha3beta		8e-50
3oaa_D	459	Structure Of The E.Coli F1-Atp Synthase Inhibited B		2e-47
1fx0_B	498	Crystal Structure Of The Chloroplast F1-Atpase From		8e-43
3oaa_A	513	Structure Of The E.Coli F1-Atp Synthase Inhibited B		1e-11
4b2q_A	485	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		5e-11
2xok_A	545	Refined Structure Of Yeast F1c10 Atpase Complex To		5e-11
4b2q_B	486	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		6e-11
2qe7_A	502	Crystal Structure Of The F1-Atpase From The Thermoa		6e-11
3ofn_A	510	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		6e-11
2hld_A	510	Crystal Structure Of Yeast Mitochondrial F1-Atpase		6e-11
3oee_A	510	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		6e-11
1sky_B	502	Crystal Structure Of The Nucleotide Free Alpha3beta		8e-11
2r9v_A	515	Crystal Structure Of Atp Synthase Subunit Alpha (Tm		5e-10
2w6e_A	553	Low Resolution Structures Of Bovine Mitochondrial F		3e-08
1ohh_B	487	Bovine Mitochondrial F1-Atpase Complexed With The I		4e-08
2xnd_A	492	Crystal Structure Of Bovine F1-C8 Sub-Complex Of At		4e-08
2jiz_A	510	The Structure Of F1-Atpase Inhibited By Resveratrol		4e-08
1cow_A	510	Bovine Mitochondrial F1-Atpase Complexed With Aurov		4e-08
1bmf_A	510	Bovine Mitochondrial F1-Atpase Length = 510		4e-08
2f43_A	510	Rat Liver F1-atpase Length = 510		1e-07
1mab_A	510	Rat Liver F1-Atpase Length = 510		1e-07
1fx0_A	507	Crystal Structure Of The Chloroplast F1-Atpase From		1e-06

>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 528

Iteration: 1
 Score =  310 bits (795), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 157/198 (79%), Positives = 167/198 (84%)
Query: 67  QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PI+
Sbjct: 74  QFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 133
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
           IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVDLL
Sbjct: 134 IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 193
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
           APYA               TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 194 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 253
Query: 247 GVISLKDKSSKVNFLFNS 264
           GVI+LKD +SKV  ++  
Sbjct: 254 GVINLKDATSKVALVYGQ 271

>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 482

Iteration: 1
 Score =  310 bits (794), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 157/196 (80%), Positives = 167/196 (85%)
Query: 67  QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PI+
Sbjct: 28  QFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 87
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
           IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVDLL
Sbjct: 88  IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 147
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
           APYA               TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 148 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207
Query: 247 GVISLKDKSSKVNFLF 262
           GVI+LKD +SKV  ++
Sbjct: 208 GVINLKDATSKVALVY 223

>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited With 4-Chloro-7-Nitrobenzofurazan Length = 480

Iteration: 1
 Score =  310 bits (794), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 157/198 (79%), Positives = 167/198 (84%)
Query: 67  QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PI+
Sbjct: 28  QFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 87
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
           IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVDLL
Sbjct: 88  IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 147
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
           APYA               TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 148 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207
Query: 247 GVISLKDKSSKVNFLFNS 264
           GVI+LKD +SKV  ++  
Sbjct: 208 GVINLKDATSKVALVYGQ 225

>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited With 4-Chloro-7-Nitrobenzofurazan Length = 480

Iteration: 1
 Score =  310 bits (794), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 157/198 (79%), Positives = 167/198 (84%)
Query: 67  QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PI+
Sbjct: 28  QFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 87
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
           IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVDLL
Sbjct: 88  IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 147
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
           APYA               TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 148 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207
Query: 247 GVISLKDKSSKVNFLFNS 264
           GVI+LKD +SKV  ++  
Sbjct: 208 GVINLKDATSKVALVYGQ 225

>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 467

Iteration: 1
 Score =  310 bits (793), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 157/198 (79%), Positives = 167/198 (84%)
Query: 67  QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PI+
Sbjct: 16  QFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 75
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
           IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVDLL
Sbjct: 76  IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 135
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
           APYA               TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 136 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 195
Query: 247 GVISLKDKSSKVNFLFNS 264
           GVI+LKD +SKV  ++  
Sbjct: 196 GVINLKDATSKVALVYGQ 213

>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound Nucleotide, With Magnesium Ion Released In The Empty Site Length = 480

Iteration: 1
 Score =  310 bits (793), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 157/198 (79%), Positives = 167/198 (84%)
Query: 67  QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PI+
Sbjct: 26  QFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 85
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
           IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVDLL
Sbjct: 86  IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 145
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
           APYA               TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 146 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 205
Query: 247 GVISLKDKSSKVNFLFNS 264
           GVI+LKD +SKV  ++  
Sbjct: 206 GVINLKDATSKVALVYGQ 223

>pdb|1MAB|B Chain B, Rat Liver F1-Atpase Length = 479

Iteration: 1
 Score =  308 bits (790), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/198 (78%), Positives = 166/198 (83%)
Query: 67  QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
           QFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PIK
Sbjct: 24  QFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIK 83
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
           IPVG ETLGRI+NVIGEPIDERGPI T + A IHA+APEF+EMSVEQEILVTGIKVVDLL
Sbjct: 84  IPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLL 143
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
           APYA               TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 144 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 203
Query: 247 GVISLKDKSSKVNFLFNS 264
           GVI+LKD +SKV  ++  
Sbjct: 204 GVINLKDATSKVALVYGQ 221

>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 511

Iteration: 1
 Score =  248 bits (632), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 71  DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130
           +LP ILNALE++    +LVLEVAQHLGENTVRTIAMDGTEGLVRG+ V D+G PI +PVG
Sbjct: 62  ELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVG 121
Query: 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
            ETLGRIINVIGEPIDERGPI +     IHAD P F E S   EIL TGIKVVDLLAPYA
Sbjct: 122 RETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYA 181
Query: 191 XXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
                          TV I ELINN+AKAHGG+SVF GVGERTREGNDLY EM E+GVI+
Sbjct: 182 RGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVIN 241
Query: 251 LKDKSSKVNFLF 262
           L+ + SKV  +F
Sbjct: 242 LEGE-SKVALVF 252

>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Beta-V279f Length = 484

Iteration: 1
 Score =  247 bits (630), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 71  DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130
           +LP ILNALE++    +LVLEVAQHLGENTVRTIAMDGTEGLVRG+ V D+G PI +PVG
Sbjct: 35  ELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVG 94
Query: 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
            ETLGRIINVIGEPIDERGPI +     IHAD P F E S   EIL TGIKVVDLLAPYA
Sbjct: 95  RETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYA 154
Query: 191 XXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
                          TV I ELINN+AKAHGG+SVF GVGERTREGNDLY EM E+GVI+
Sbjct: 155 RGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVIN 214
Query: 251 LKDKSSKVNFLF 262
           L+ + SKV  +F
Sbjct: 215 LEGE-SKVALVF 225

>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides Length = 484

Iteration: 1
 Score =  247 bits (630), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 71  DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130
           +LP ILNALE++    +LVLEVAQHLGENTVRTIAMDGTEGLVRG+ V D+G PI +PVG
Sbjct: 35  ELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVG 94
Query: 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
            ETLGRIINVIGEPIDERGPI +     IHAD P F E S   EIL TGIKVVDLLAPYA
Sbjct: 95  RETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYA 154
Query: 191 XXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
                          TV I ELINN+AKAHGG+SVF GVGERTREGNDLY EM E+GVI+
Sbjct: 155 RGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVIN 214
Query: 251 LKDKSSKVNFLF 262
           L+ + SKV  +F
Sbjct: 215 LEGE-SKVALVF 225

>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 478

Iteration: 1
 Score =  247 bits (630), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 71  DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130
           +LP ILNALE++    +LVLEVAQHLGENTVRTIAMDGTEGLVRG+ V D+G PI +PVG
Sbjct: 29  ELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVG 88
Query: 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
            ETLGRIINVIGEPIDERGPI +     IHAD P F E S   EIL TGIKVVDLLAPYA
Sbjct: 89  RETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYA 148
Query: 191 XXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
                          TV I ELINN+AKAHGG+SVF GVGERTREGNDLY EM E+GVI+
Sbjct: 149 RGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVIN 208
Query: 251 LKDKSSKVNFLF 262
           L+ + SKV  +F
Sbjct: 209 LEGE-SKVALVF 219

>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 470

Iteration: 1
 Score =  247 bits (630), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 71  DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130
           +LP ILNALE++    +LVLEVAQHLGENTVRTIAMDGTEGLVRG+ V D+G PI +PVG
Sbjct: 24  ELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVG 83
Query: 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
            ETLGRIINVIGEPIDERGPI +     IHAD P F E S   EIL TGIKVVDLLAPYA
Sbjct: 84  RETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYA 143
Query: 191 XXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
                          TV I ELINN+AKAHGG+SVF GVGERTREGNDLY EM E+GVI+
Sbjct: 144 RGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVIN 203
Query: 251 LKDKSSKVNFLF 262
           L+ + SKV  +F
Sbjct: 204 LEGE-SKVALVF 214

>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 473

Iteration: 1
 Score =  246 bits (629), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 71  DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130
           +LP ILNALE++    +LVLEVAQHLGENTVRTIAMDGTEGLVRG+ V D+G PI +PVG
Sbjct: 24  ELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVG 83
Query: 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
            ETLGRIINVIGEPIDERGPI +     IHAD P F E S   EIL TGIKVVDLLAPYA
Sbjct: 84  RETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYA 143
Query: 191 XXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
                          TV I ELINN+AKAHGG+SVF GVGERTREGNDLY EM E+GVI+
Sbjct: 144 RGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVIN 203
Query: 251 LKDKSSKVNFLF 262
           L+ + SKV  +F
Sbjct: 204 LEGE-SKVALVF 214

>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 462

Iteration: 1
 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 128/186 (68%), Gaps = 2/186 (1%)
Query: 67  QFDH-DLPPILNALEVEG-RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP 124
           QF+   LP I NA+ +E  +   L +E A HLG+N VR +AM  T+GLVRG    D+G P
Sbjct: 17  QFESGQLPDIYNAITIERPQGGTLTVEAAVHLGDNVVRCVAMASTDGLVRGLEAVDTGAP 76
Query: 125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVD 184
           I +PVG  TLGR+ NV+GEPIDE+G ++ ++   IH  APEF E+S   EIL TGIKV+D
Sbjct: 77  ISVPVGKATLGRVFNVLGEPIDEQGEVNAEERHPIHRPAPEFEELSTADEILETGIKVID 136
Query: 185 LLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 244
           LLAPYA               TVLI ELINNVA+ HGG SVFAGVGERTREGNDLYHEM 
Sbjct: 137 LLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERTREGNDLYHEMK 196
Query: 245 ESGVIS 250
           +SGVIS
Sbjct: 197 DSGVIS 202

>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3 Sub-Complex Of F1-Atpase From The Thermophilic Bacillus Ps3 Length = 473

Iteration: 1
 Score =  193 bits (491), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 128/187 (68%), Gaps = 8/187 (4%)
Query: 72  LPPILNALEVEGRSPR-------LVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP 124
           LP I NAL+++ ++         L LEVA HLG++TVRTIAM  T+GL+RG  V D+G P
Sbjct: 23  LPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAP 82
Query: 125 IKIPVGAETLGRIINVIGEPIDERGPIDTD-KSAAIHADAPEFVEMSVEQEILVTGIKVV 183
           I +PVG  TLGR+ NV+GEPID  G I  D +   IH  AP+F E++ E EIL TGIKVV
Sbjct: 83  ISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVV 142
Query: 184 DLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 243
           DLLAPY                TVLI ELI+N+A+ HGG SVFAGVGERTREGNDLYHEM
Sbjct: 143 DLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEM 202
Query: 244 IESGVIS 250
            +SGVIS
Sbjct: 203 KDSGVIS 209

>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 459

Iteration: 1
 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/198 (52%), Positives = 129/198 (65%), Gaps = 4/198 (2%)
Query: 67  QFDHD-LPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPI 125
           +F  D +P + +ALEV+  + RLVLEV Q LG   VRTIAM  ++GL RG  V D  +PI
Sbjct: 16  EFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPI 75
Query: 126 KIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDL 185
           ++PVG  TLGRI+NV+GEP+D +G I  ++  AIH  AP + E+S  QE+L TGIKV+DL
Sbjct: 76  EVPVGEATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVIDL 135
Query: 186 LAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE 245
           + P+A               TV +MELI N+A  H GYSVFAGVGERTREGND YHEM +
Sbjct: 136 MCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTD 195
Query: 246 SGVISLKDKSSKVNFLFN 263
           S VI   DK S V    N
Sbjct: 196 SNVI---DKVSLVYGQMN 210

>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From Spinach Length = 498

Iteration: 1
 Score =  170 bits (430), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 103/197 (52%), Positives = 126/197 (63%), Gaps = 6/197 (3%)
Query: 72  LPPILNALEVEGRSP-----RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
           +P I NAL V+GR        +  EV Q LG N VR +AM  T+GL RG  V D+G P+ 
Sbjct: 40  MPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLS 99
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
           +PVG  TLGRI NV+GEP+D   P+DT  ++ IH  AP F ++  +  I  TGIKVV+LL
Sbjct: 100 VPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLL 159
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
           APY                TVLIMELINN+AKAHGG SVF GVGERTREGNDLY EM ES
Sbjct: 160 APYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKES 219
Query: 247 GVISLKD-KSSKVNFLF 262
           GVI+ ++   SKV  ++
Sbjct: 220 GVINEQNIAESKVALVY 236

>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 513

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Query: 92  VAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI 151
           +A +L  ++V  + M     L  G  V  +G  +++PVG   LGR++N +G PID +GP+
Sbjct: 62  IALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPL 121
Query: 152 DTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIME 211
           D D  +A+ A AP  +E     + + TG K VD + P                 T L ++
Sbjct: 122 DHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAID 181
Query: 212 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
            I N  +  G   ++  +G++    +++  ++ E G ++
Sbjct: 182 AIIN-QRDSGIKCIYVAIGQKASTISNVVRKLEEHGALA 219

>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 485

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 104 IAMDGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
           I + G++ LV+ G++V  +GN + +PVG   LGR+++ +G PID +GPID    +     
Sbjct: 50  IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 109
Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 222
           AP  +      E + TG+K VD L P                 T + ++ I N  + + G
Sbjct: 110 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 169
Query: 223 -------YSVFAGVGER 232
                  Y V+  VG++
Sbjct: 170 SDESKKLYCVYVAVGQK 186

>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 545

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 104 IAMDGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
           I + G++ LV+ G++V  +GN + +PVG   LGR+++ +G PID +GPID    +     
Sbjct: 110 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 169
Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 222
           AP  +      E + TG+K VD L P                 T + ++ I N  + + G
Sbjct: 170 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 229
Query: 223 -------YSVFAGVGER 232
                  Y V+  VG++
Sbjct: 230 SDESKKLYCVYVAVGQK 246

>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 486

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 104 IAMDGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
           I + G++ LV+ G++V  +GN + +PVG   LGR+++ +G PID +GPID    +     
Sbjct: 51  IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 110
Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 222
           AP  +      E + TG+K VD L P                 T + ++ I N  + + G
Sbjct: 111 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 170
Query: 223 -------YSVFAGVGER 232
                  Y V+  VG++
Sbjct: 171 SDESKKLYCVYVAVGQK 187

>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 502

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 58/100 (58%)
Query: 89  VLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDER 148
           V+ +AQ+L E+ V  + +     +  G  V  +G  +++PVG   LGR++N +G+P+D R
Sbjct: 59  VMGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGR 118
Query: 149 GPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAP 188
           GPI+T +   I + AP  ++     E L TGIK +D + P
Sbjct: 119 GPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIP 158

>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Alpha-N67i Length = 510

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 104 IAMDGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
           I + G++ LV+ G++V  +GN + +PVG   LGR+++ +G PID +GPID    +     
Sbjct: 75  IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 222
           AP  +      E + TG+K VD L P                 T + ++ I N  + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 223 -------YSVFAGVGER 232
                  Y V+  VG++
Sbjct: 195 SDESKKLYCVYVAVGQK 211

>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 510

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 104 IAMDGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
           I + G++ LV+ G++V  +GN + +PVG   LGR+++ +G PID +GPID    +     
Sbjct: 75  IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 222
           AP  +      E + TG+K VD L P                 T + ++ I N  + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 223 -------YSVFAGVGER 232
                  Y V+  VG++
Sbjct: 195 SDESKKLYCVYVAVGQK 211

>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Alpha-F405s Length = 510

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 104 IAMDGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
           I + G++ LV+ G++V  +GN + +PVG   LGR+++ +G PID +GPID    +     
Sbjct: 75  IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 222
           AP  +      E + TG+K VD L P                 T + ++ I N  + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 223 -------YSVFAGVGER 232
                  Y V+  VG++
Sbjct: 195 SDESKKLYCVYVAVGQK 211

>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3 Sub-Complex Of F1-Atpase From The Thermophilic Bacillus Ps3 Length = 502

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 58/100 (58%)
Query: 89  VLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDER 148
           V+ +A +L EN V  + +    G+  G  V  +G  +++PVG   +GR++N +G+P+D  
Sbjct: 59  VMGMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGL 118
Query: 149 GPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAP 188
           GP++T ++  I + AP  ++     E L TGIK +D L P
Sbjct: 119 GPVETTETRPIESRAPGVMDRRSVHEPLQTGIKAIDALVP 158

>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612) From Thermotoga Maritima At 2.10 A Resolution Length = 515

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
Query: 92  VAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI 151
           VA +L E+ V  I +   + +  G  V      I++PVG E LGR++N +GEP+D +GPI
Sbjct: 75  VAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPI 134
Query: 152 DTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIME 211
           +      I   AP  +        L TGIK +D   P                 T + ++
Sbjct: 135 NAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSXIPIGRGQRELIIGDRQTGKTAIAID 194
Query: 212 LINNVAKAHGGYSVFAGVGER 232
            I N  K  G Y ++  +G++
Sbjct: 195 TIIN-QKGQGVYCIYVAIGQK 214

>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 553

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
           G + L++ G +V  +G  + +PVG E LGR+++ +G  ID +GPI +     +   AP  
Sbjct: 120 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 179
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
           +     +E + TGIK VD L P                 T + ++ I N  + + G    
Sbjct: 180 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 239
Query: 223 ---YSVFAGVGER 232
              Y ++  +G++
Sbjct: 240 KKLYCIYVAIGQK 252

>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Inhibitor Protein If1 Length = 487

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
           G + L++ G +V  +G  + +PVG E LGR+++ +G  ID +GPI +     +   AP  
Sbjct: 54  GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 113
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
           +     +E + TGIK VD L P                 T + ++ I N  + + G    
Sbjct: 114 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 173
Query: 223 ---YSVFAGVGER 232
              Y ++  +G++
Sbjct: 174 KKLYCIYVAIGQK 186

>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 492

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
           G + L++ G +V  +G  + +PVG E LGR+++ +G  ID +GPI +     +   AP  
Sbjct: 59  GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 118
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
           +     +E + TGIK VD L P                 T + ++ I N  + + G    
Sbjct: 119 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 178
Query: 223 ---YSVFAGVGER 232
              Y ++  +G++
Sbjct: 179 KKLYCIYVAIGQK 191

>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol. Length = 510

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
           G + L++ G +V  +G  + +PVG E LGR+++ +G  ID +GPI +     +   AP  
Sbjct: 77  GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
           +     +E + TGIK VD L P                 T + ++ I N  + + G    
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 223 ---YSVFAGVGER 232
              Y ++  +G++
Sbjct: 197 KKLYCIYVAIGQK 209

>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 510

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
           G + L++ G +V  +G  + +PVG E LGR+++ +G  ID +GPI +     +   AP  
Sbjct: 77  GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
           +     +E + TGIK VD L P                 T + ++ I N  + + G    
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 223 ---YSVFAGVGER 232
              Y ++  +G++
Sbjct: 197 KKLYCIYVAIGQK 209

>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase Length = 510

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
           G + L++ G +V  +G  + +PVG E LGR+++ +G  ID +GPI +     +   AP  
Sbjct: 77  GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
           +     +E + TGIK VD L P                 T + ++ I N  + + G    
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 223 ---YSVFAGVGER 232
              Y ++  +G++
Sbjct: 197 KKLYCIYVAIGQK 209

>pdb|2F43|A Chain A, Rat Liver F1-atpase Length = 510

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
           G + L++ G +V  +G  + +PVG E LGR+++ +G  ID +GP+ +     +   AP  
Sbjct: 77  GNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGI 136
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
           +     +E + TGIK VD L P                 T + ++ I N  + + G    
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 223 ---YSVFAGVGER 232
              Y ++  +G++
Sbjct: 197 KKLYCIYVAIGQK 209

>pdb|1MAB|A Chain A, Rat Liver F1-Atpase Length = 510

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
           G + L++ G +V  +G  + +PVG E LGR+++ +G  ID +GP+ +     +   AP  
Sbjct: 77  GNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGI 136
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
           +     +E + TGIK VD L P                 T + ++ I N  + + G    
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 223 ---YSVFAGVGER 232
              Y ++  +G++
Sbjct: 197 KKLYCIYVAIGQK 209

>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From Spinach Length = 507

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%)
Query: 92  VAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI 151
           +A +L  N V  + M     +  G  V  +G   +IPV    LGR+IN + +PID RG I
Sbjct: 63  IALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEI 122
Query: 152 DTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAP 188
              +S  I + AP  +      E L TG+  +D + P
Sbjct: 123 TASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIP 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	1e-144
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	1e-134
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	1e-126
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	2e-55
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	7e-07
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	1e-42
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	8e-12
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	2e-38
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	8e-27
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	5e-23
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	2e-22
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	4e-16
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	5e-16
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	5e-16
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	1e-15
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... Length = 482

 Score =  411 bits (1059), Expect = e-144
 Identities = 186/220 (84%), Positives = 199/220 (90%)

Query: 43  AAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVR 102
           A+ +   G   GR+VAVIGAVVDVQFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVR
Sbjct: 4   ASPSPKAGATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVR 63

Query: 103 TIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
           TIAMDGTEGLVRGQ V DSG PI+IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+
Sbjct: 64  TIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 123

Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 222
           APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG
Sbjct: 124 APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 183

Query: 223 YSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLF 262
           YSVFAGVGERTREGNDLYHEMIESGVI+LKD +SKV  ++
Sbjct: 184 YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 223

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B* Length = 498

 Score =  388 bits (999), Expect = e-134
 Identities = 125/227 (55%), Positives = 156/227 (68%), Gaps = 7/227 (3%)

Query: 43  AAKAAPKGKGNGRVVAVIGAVVDVQFDHD-LPPILNALEVEGRSP-----RLVLEVAQHL 96
              +  + K  GR+  +IG V++V F    +P I NAL V+GR        +  EV Q L
Sbjct: 10  PGVSTLEKKNLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLL 69

Query: 97  GENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKS 156
           G N VR +AM  T+GL RG  V D+G P+ +PVG  TLGRI NV+GEP+D   P+DT  +
Sbjct: 70  GNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTT 129

Query: 157 AAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216
           + IH  AP F ++  +  I  TGIKVV+LLAPY +GGKIGLFGGAGVGKTVLIMELINN+
Sbjct: 130 SPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI 189

Query: 217 AKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKS-SKVNFLF 262
           AKAHGG SVF GVGERTREGNDLY EM ESGVI+ ++ + SKV  ++
Sbjct: 190 AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVY 236

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 Length = 473

 Score =  366 bits (941), Expect = e-126
 Identities = 132/206 (64%), Positives = 158/206 (76%), Gaps = 9/206 (4%)

Query: 54  GRVVAVIGAVVDVQFDHD-LPPILNALEVEGRSP-------RLVLEVAQHLGENTVRTIA 105
           GRV+ V+G VVDV+F++  LP I NAL+++ ++         L LEVA HLG++TVRTIA
Sbjct: 4   GRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIA 63

Query: 106 MDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTD-KSAAIHADAP 164
           M  T+GL+RG  V D+G PI +PVG  TLGR+ NV+GEPID  G I  D +   IH  AP
Sbjct: 64  MASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAP 123

Query: 165 EFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 224
           +F E++ E EIL TGIKVVDLLAPY KGGKIGLFGGAGVGKTVLI ELI+N+A+ HGG S
Sbjct: 124 KFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183

Query: 225 VFAGVGERTREGNDLYHEMIESGVIS 250
           VFAGVGERTREGNDLYHEM +SGVIS
Sbjct: 184 VFAGVGERTREGNDLYHEMKDSGVIS 209

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C Length = 578

 Score =  186 bits (474), Expect = 2e-55
 Identities = 48/223 (21%), Positives = 79/223 (35%), Gaps = 27/223 (12%)

Query: 50  GKGNGRVVAVIGAVVDVQFDHD-LPPILNALEV------EGRSPRLVLEVAQHLGENTVR 102
           G   G  V   G  + V+     L  I + ++       E     +   V  H  +   +
Sbjct: 57  GLKVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTGIYITRGVVVHALDREKK 116

Query: 103 ---TIAMDGTEGLVRGQV---VADSGNPIKIPVGAETLGRIINVI--GEPIDERGPIDTD 154
              T  +   + +  G V   V + G   KI V  +  GR+  V   GE   E   +  +
Sbjct: 117 WAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKPAGEYTVEEPVVVLE 176

Query: 155 KSAA--------IHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT 206
                       +    P   ++       +TG++++D+L P A GG   + G  G GK+
Sbjct: 177 DGTELKMYHTWPVRRARPVQRKLDPN-TPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKS 235

Query: 207 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI 249
           V    L      ++    V+ G GER  E  D+  E  E    
Sbjct: 236 VTQQSLAKW---SNADVVVYVGSGERGNEMTDVLVEFPELTDP 275

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C Length = 578

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 53  NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGL 112
            G +  + G  V  +       + +  +V      LV E+ +  G+     +  D T GL
Sbjct: 3   QGVIQKIAGPAVIAKGMLG-ARMYDISKVGEE--GLVGEIIRLDGDTAFVQVYED-TSGL 58

Query: 113 VRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDE 147
             G+ V  +G P+ + +G   L  I + I  P++ 
Sbjct: 59  KVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLER 93

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A Length = 588

 Score =  152 bits (385), Expect = 1e-42
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 11/159 (6%)

Query: 91  EVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGP 150
           ++   + E ++    +    G + G++V           G  T+  +I  +  P  E   
Sbjct: 134 DIIGEVPETSIIVHKIMVPPG-IEGEIVEI------AEEGDYTIEEVIAKVKTPSGEIKE 186

Query: 151 IDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM 210
           +   +   +    P + E    +  L+TG +V+D   P AKGG   + G AG GKTV   
Sbjct: 187 LKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKTVTQH 245

Query: 211 ELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI 249
           +L      +     ++ G GER  E  D+  E  +    
Sbjct: 246 QLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A Length = 588

 Score = 64.0 bits (156), Expect = 8e-12
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 53  NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGL 112
            GR++ V G +V          +   + V      L+ E+ +  G+  V  +  + T G+
Sbjct: 4   KGRIIRVTGPLVVADGMKG-AKMYEVVRVGEL--GLIGEIIRLEGDKAVIQVYEE-TAGV 59

Query: 113 VRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDE 147
             G+ V  +G  + + +G   L  I + I  P++ 
Sbjct: 60  RPGEPVVGTGASLSVELGPRLLTSIYDGIQRPLEV 94

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D* Length = 464

 Score =  139 bits (351), Expect = 2e-38
 Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 12/208 (5%)

Query: 54  GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 113
             +  + G ++ V+   D       ++++  + R+       + E        + T GL 
Sbjct: 9   TGITYISGPLLFVENAKD-LAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLD 67

Query: 114 RGQ-VVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVE 172
                V+   +  ++ V  E LGR  N IG+PID   PI  +K   I       V     
Sbjct: 68  LATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKP 127

Query: 173 QEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA----------KAHGG 222
           ++ + TGI  +D++    +G K+ +F G+G+    +  ++               K    
Sbjct: 128 EQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPF 187

Query: 223 YSVFAGVGERTREGNDLYHEMIESGVIS 250
             VFA +G   RE +    E   +G +S
Sbjct: 188 AVVFAAMGITQRELSYFIQEFERTGALS 215

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* Length = 469

 Score =  107 bits (268), Expect = 8e-27
 Identities = 42/212 (19%), Positives = 83/212 (39%), Gaps = 10/212 (4%)

Query: 45  KAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNAL-EVEGRSPRLVLEVAQHLGENTVRT 103
              P  K    +  + G ++ V  +   P   N +  ++     +     Q L  +    
Sbjct: 6   HHHPMVKEYKTITQIAGPLIFV--EKTEPVGYNEIVNIKMGDGTVRR--GQVLDSSADIV 61

Query: 104 IAM--DGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHA 161
           +    +GT GL +   V  +G  +K+P   + LGRI++  GEP D    I  D+   I+ 
Sbjct: 62  VVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDING 121

Query: 162 DAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 221
            A         ++ + TGI  +D      +G K+ +F  +G+    + +++    +    
Sbjct: 122 AAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGS 181

Query: 222 GYS---VFAGVGERTREGNDLYHEMIESGVIS 250
             +   VFA +G    E      +  ++G + 
Sbjct: 182 ESAFAVVFAAMGITNEEAQYFMSDFEKTGALE 213

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Length = 438

 Score = 96.3 bits (240), Expect = 5e-23
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 3/131 (2%)

Query: 108 GTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFV 167
           G     R        +  ++P+G   LGR+++  G+P+D     DT ++ A+       +
Sbjct: 73  GARVYARNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPL 132

Query: 168 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 227
           + +  + +L TG++ ++ L    +G ++GLF G+GVGK+VL+  +            V  
Sbjct: 133 QRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY---TRADVIVVG 189

Query: 228 GVGERTREGND 238
            +GER RE  D
Sbjct: 190 LIGERGREVKD 200

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* Length = 347

 Score = 93.5 bits (233), Expect = 2e-22
 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 4/125 (3%)

Query: 124 PIKIPVGAETLGRIINVIGEPIDERGPI-DTDKSAAIHADAPEFVEMSVEQEILVTGIKV 182
             KI VG   LGR+I+ IG P++            +++A+ P+ +   V  +  + G++ 
Sbjct: 2   SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRA 61

Query: 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE 242
           +D L     G +IG+F G+GVGK+ L+  + N    A     V A +GER RE N+    
Sbjct: 62  IDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNG---ASADIIVLALIGERGREVNEFLAL 118

Query: 243 MIESG 247
           + +S 
Sbjct: 119 LPQST 123

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B Length = 502

 Score = 76.6 bits (189), Expect = 4e-16
 Identities = 43/141 (30%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 92  VAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI 151
           +AQ+L E+ V  + +     +  G  V  +G  +++PVG   LGR++N +G+P+D RGPI
Sbjct: 62  MAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPI 121

Query: 152 DTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 211
           +T +   I + AP  ++     E L TGIK +D + P  +G +  + G    GKT + ++
Sbjct: 122 ETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAID 181

Query: 212 LINNVAKAHGGYSVFAGVGER 232
            I N  K      ++  +G++
Sbjct: 182 TIIN-QKGQDVICIYVAIGQK 201

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A* Length = 507

 Score = 76.6 bits (189), Expect = 5e-16
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 1/141 (0%)

Query: 92  VAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI 151
           +A +L  N V  + M     +  G  V  +G   +IPV    LGR+IN + +PID RG I
Sbjct: 63  IALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEI 122

Query: 152 DTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 211
              +S  I + AP  +      E L TG+  +D + P  +G +  + G    GKT +  +
Sbjct: 123 TASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATD 182

Query: 212 LINNVAKAHGGYSVFAGVGER 232
            I N  +      V+  +G++
Sbjct: 183 TILN-QQGQNVICVYVAIGQK 202

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} Length = 515

 Score = 76.2 bits (188), Expect = 5e-16
 Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 1/141 (0%)

Query: 92  VAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI 151
           VA +L E+ V  I +   + +  G  V      I++PVG E LGR++N +GEP+D +GPI
Sbjct: 75  VAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPI 134

Query: 152 DTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 211
           +      I   AP  +        L TGIK +D + P  +G +  + G    GKT + ++
Sbjct: 135 NAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAID 194

Query: 212 LINNVAKAHGGYSVFAGVGER 232
            I N  K  G Y ++  +G++
Sbjct: 195 TIIN-QKGQGVYCIYVAIGQK 214

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A Length = 513

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 1/141 (0%)

Query: 92  VAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI 151
           +A +L  ++V  + M     L  G  V  +G  +++PVG   LGR++N +G PID +GP+
Sbjct: 62  IALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPL 121

Query: 152 DTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 211
           D D  +A+ A AP  +E     + + TG K VD + P  +G +  + G    GKT L ++
Sbjct: 122 DHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAID 181

Query: 212 LINNVAKAHGGYSVFAGVGER 232
            I N  +  G   ++  +G++
Sbjct: 182 AIIN-QRDSGIKCIYVAIGQK 201

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ... Length = 510

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 36/124 (29%), Positives = 63/124 (50%)

Query: 92  VAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI 151
           ++ +L  + V  +     + +  G +V  +G  + +PVG E LGR+++ +G  ID +GPI
Sbjct: 62  MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 121

Query: 152 DTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 211
            +     +   AP  +     +E + TGIK VD L P  +G +  + G    GKT + ++
Sbjct: 122 GSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 181

Query: 212 LINN 215
            I N
Sbjct: 182 TIIN 185

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 2e-13
 Identities = 27/216 (12%), Positives = 65/216 (30%), Gaps = 42/216 (19%)

Query: 61  GAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVAD 120
             +   + DH    I+ + +    +   +        E  V+             + V +
Sbjct: 44  SILSKEEIDH----IIMSKDAVSGT-LRLFWTLLSKQEEMVQ-------------KFVEE 85

Query: 121 SGNP----IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEIL 176
                   +  P+  E     +      I++R  +        + D   F + +V +   
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTR-MYIEQRDRL--------YNDNQVFAKYNVSRLQP 136

Query: 177 VTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVF-AGVGERTR 234
              ++    L        + + G  G GKT + +++  +   +    + +F   +     
Sbjct: 137 YLKLR--QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 235 EG------NDLYHEMIESGVISLKDKSSKVNFLFNS 264
                     L ++ I+    S  D SS +    +S
Sbjct: 195 PETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHS 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	100.0
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	100.0
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	100.0
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	100.0
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	100.0
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	100.0
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	100.0
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	100.0
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	100.0
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	100.0
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	100.0
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	100.0
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	100.0
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	100.0
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	100.0
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.94
3l0o_A	427	Transcription termination factor RHO; helicase, RH	99.92
3ice_A	422	Transcription termination factor RHO; transcriptio	99.85
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.89
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.88
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.86
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.62
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.62
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.61
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.57
3io5_A	333	Recombination and repair protein; storage dimer, i	97.25
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.18
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.06
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.0
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.97
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.93
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.88
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.82
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.82
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.78
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.73
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.67
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.64
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.59
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.59
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.59
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.57
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.54
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.51
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.43
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.32
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.3
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.29
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.28
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.26
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.24
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.23
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.23
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.22
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.21
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.15
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.13
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.11
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.11
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.1
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.1
1g6h_A	257	High-affinity branched-chain amino acid transport	96.09
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.09
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.09
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.08
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.08
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.07
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.05
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.03
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.03
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.03
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.01
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.01
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.01
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.01
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.0
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.99
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.99
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.97
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.97
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.96
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.95
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.93
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.91
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.91
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.9
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.89
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.88
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.88
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.87
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.86
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.85
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.84
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.83
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.79
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.76
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.71
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.7
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.67
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.66
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.64
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.62
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.6
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.56
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.56
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.56
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.56
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.53
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.49
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.46
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.46
3bos_A	242	Putative DNA replication factor; P-loop containing	95.45
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.4
2og2_A	359	Putative signal recognition particle receptor; nuc	95.39
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.38
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.38
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.37
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.31
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.3
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.26
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.25
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.24
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.23
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.21
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.17
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.15
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.15
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.14
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.11
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.1
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.1
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.07
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.04
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.02
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.95
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.89
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.88
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	94.85
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	94.83
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.82
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	94.79
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.73
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.69
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.67
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.65
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.65
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.65
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.57
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	94.56
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	94.54
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.52
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.51
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.45
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.43
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	94.41
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.4
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.3
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.29
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.21
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.18
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.18
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.09
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.08
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.06
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.05
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.05
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.03
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.99
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	93.98
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	93.98
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	93.96
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	93.95
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	93.89
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	93.88
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	93.88
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.87
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	93.86
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.85
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	93.84
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	93.81
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	93.78
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	93.76
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	93.75
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	93.73
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	93.68
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	93.67
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	93.65
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	93.6
2wji_A	165	Ferrous iron transport protein B homolog; membrane	93.58
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	93.55
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	93.52
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	93.5
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.49
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	93.45
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.43
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.42
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	93.41
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	93.4
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	93.39
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.37
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.35
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	93.35
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	93.35
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.34
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	93.3
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.27
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	93.27
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.21
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	93.17
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.17
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	93.14
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	93.14
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	93.08
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	93.06
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.04
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	93.01
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	93.01
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.98
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	92.97
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	92.96
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.93
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	92.92
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	92.91
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.89
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.87
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	92.83
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.83
3kta_A	182	Chromosome segregation protein SMC; structural mai	92.79
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	92.73
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	92.73
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	92.72
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.71
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	92.7
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	92.7
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	92.67
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	92.66
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.65
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.64
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	92.58
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.58
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	92.56
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	92.55
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.54
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.53
2ged_A	193	SR-beta, signal recognition particle receptor beta	92.5
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.5
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	92.46
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	92.45
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	92.42
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	92.42
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	92.4
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	92.4
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	92.37
2vli_A	183	Antibiotic resistance protein; transferase, tunica	92.35
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.34
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	92.33
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	92.32
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.32
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	92.31
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.29
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	92.28
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	92.28
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	92.26
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	92.24
1via_A	175	Shikimate kinase; structural genomics, transferase	92.22
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	92.2
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	92.19
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.18
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	92.16
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	92.14
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.1
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	92.09
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	92.09
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	92.07
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	92.07
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	92.06
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	92.06
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.04
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	92.03
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.0
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	91.99
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.96
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	91.91
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	91.91
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	91.9
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.89
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	91.88
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	91.87
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	91.85
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	91.84
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	91.82
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	91.82
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	91.81
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	91.81
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	91.8
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	91.77
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	91.75
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.75
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	91.73
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	91.72
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.69
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.66
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.64
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	91.64
2fna_A	357	Conserved hypothetical protein; structural genomic	91.61
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	91.61
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.61
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	91.57
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	91.56
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	91.56
2qgz_A	308	Helicase loader, putative primosome component; str	91.55
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	91.54
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	91.52
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	91.51
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	91.48
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	91.48
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.47
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	91.42
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	91.42
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.41
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	91.4
1nrj_B	218	SR-beta, signal recognition particle receptor beta	91.4
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	91.37
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	91.37
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	91.36
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	91.34
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	91.3
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	91.26
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	91.24
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.24
3pvs_A	447	Replication-associated recombination protein A; ma	91.23
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	91.23
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.21
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	91.21
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	91.21
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	91.2
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.19
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	91.19
2fh5_B	214	SR-beta, signal recognition particle receptor beta	91.19
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	91.18
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.17
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	91.14
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	91.12
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	91.07
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	91.07
2hf9_A	226	Probable hydrogenase nickel incorporation protein	91.07
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	91.06
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	91.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	90.93
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	90.92
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	90.91
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	90.9
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	90.86
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	90.85
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	90.83
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	90.81
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	90.81
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	90.8
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	90.76
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	90.75
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	90.74
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	90.68
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	90.68
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.64
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	90.6
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.58
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	90.57
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	90.56
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	90.56
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	90.54
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	90.53
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.53
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	90.53
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.52
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.5
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	90.5
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	90.5
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	90.49
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	90.45
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	90.44
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	90.42
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	90.36
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	90.32
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	90.31
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.31
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	90.29
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	90.27
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	90.26
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	90.26
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	90.26
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	90.24
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	90.22
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	90.19
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	90.13
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	90.12
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	90.09
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	89.99
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	89.99
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	89.97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	89.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	89.85
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	89.82
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	89.8
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	89.71
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	89.7
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	89.68
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	89.67
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	89.6
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	89.57
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	89.51
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	89.42
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	89.38
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	89.36
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	89.34
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	89.32
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	89.29
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	89.25
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	89.21
2r44_A	331	Uncharacterized protein; putative ATPase, structur	89.13
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	89.13
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	89.1
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	89.07
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	89.07
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	88.98
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	88.96
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	88.94
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	88.86
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	88.85
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	88.84
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	88.75
3llu_A	196	RAS-related GTP-binding protein C; structural geno	88.47
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	88.43
1tue_A	212	Replication protein E1; helicase, replication, E1E	88.39
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	88.39
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	88.38
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	88.37
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	88.35
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	88.31
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	88.31
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	88.3
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	88.22
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	88.12
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	88.09
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	88.05
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	88.0
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	87.95
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	87.94
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	87.88
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	87.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	87.87
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	87.87
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	87.86
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	87.76
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	87.73
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	87.69
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	87.68
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	87.63
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	87.6
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	87.51
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	87.35
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	87.45
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	87.22
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	87.19
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	87.06
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	87.03
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	87.03
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	87.0
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	86.83
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	86.73
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	86.72
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	86.7
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	86.51
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	86.34
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	86.21
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	86.18
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	86.12
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	86.11
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	86.11
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	85.85
3co5_A	143	Putative two-component system transcriptional RES	85.77
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	85.53
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	85.52
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	85.52
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	85.49
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	85.45
3lfu_A	647	DNA helicase II; SF1 helicase, ATP-binding, DNA da	85.44
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	85.43
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	85.39
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	85.31
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	85.25
2chq_A	319	Replication factor C small subunit; DNA-binding pr	85.23
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	85.16
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	85.15
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	85.11
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	84.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	84.7
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	84.59
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	84.58

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=100.00  E-value=5.2e-54  Score=417.24  Aligned_cols=216  Identities=86%  Similarity=1.271  Sum_probs=202.0

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccC
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPV  129 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vpv  129 (266)
                      ...+|+|++|.|++|+++|+...|.+++.|++...+..+.+||+++++++.+++++|+++.||++|++|.+||+++++|+
T Consensus        11 ~~~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpv   90 (482)
T 2ck3_D           11 GATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPV   90 (482)
T ss_dssp             --CEEEEEEEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEEEC
T ss_pred             CCcceEEEEEEccEEEEEecCccCcccceEEEeeCCCcEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCcceeec
Confidence            34579999999999999998656789999998643346899999999999999999999999999999999999999999


Q ss_pred             ChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHH
Q psy17544        130 GAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI  209 (266)
Q Consensus       130 G~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~  209 (266)
                      |++|||||+|++|+|||+.+++...++||++.+||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|+
T Consensus        91 G~~lLGRV~d~lG~PiDg~~~~~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~L~  170 (482)
T 2ck3_D           91 GPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI  170 (482)
T ss_dssp             SGGGBTCEECTTSCBCSSSCSCCCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHH
T ss_pred             cccccCCEEcccCcCcCCcCCCCccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCChHHHH
Confidence            99999999999999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        210 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       210 ~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +++++|++++|++++||++||||+||++||+++|.++++++.++.++|+++|++|+
T Consensus       171 ~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~  226 (482)
T 2ck3_D          171 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQM  226 (482)
T ss_dssp             HHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECT
T ss_pred             HHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECC
Confidence            99999987777789999999999999999999999999998777789999999986

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=100.00  E-value=1.6e-53  Score=415.09  Aligned_cols=213  Identities=58%  Similarity=0.962  Sum_probs=199.2

Q ss_pred             ccEEEEEECcEEEEEecC-CCcccccEEEEecCC---C--ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcc
Q psy17544         53 NGRVVAVIGAVVDVQFDH-DLPPILNALEVEGRS---P--RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK  126 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~-~~p~ig~~~~v~~~~---~--~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~  126 (266)
                      +|+|++|.|++|+++|+. ..|.+++.|+|...+   .  .+.+||+++++++.+++++|++++||++|++|.+||++++
T Consensus        20 ~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~   99 (498)
T 1fx0_B           20 LGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLS   99 (498)
T ss_dssp             CEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSCE
T ss_pred             CceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcce
Confidence            699999999999999984 467899999996422   2  5799999999999999999999999999999999999999


Q ss_pred             ccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHH
Q psy17544        127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT  206 (266)
Q Consensus       127 VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT  206 (266)
                      +|+|++|||||+|++|+|||+.+++..+++|||+.+||+|++|.++++||+||||+||+|+|||||||+|||||+|+|||
T Consensus       100 vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGKT  179 (498)
T 1fx0_B          100 VPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKT  179 (498)
T ss_dssp             EEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSHH
T ss_pred             EecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCCCch
Confidence            99999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCC-CceEEEeecc
Q psy17544        207 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKS-SKVNFLFNSR  265 (266)
Q Consensus       207 ~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~-~~~~~v~~q~  265 (266)
                      +|+++|++|++++|++++||++||||+||++||+++|.++|+++-++.+ +|+++|++|+
T Consensus       180 ~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~  239 (498)
T 1fx0_B          180 VLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQM  239 (498)
T ss_dssp             HHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECT
T ss_pred             HHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCC
Confidence            9999999998877778999999999999999999999999999755544 5999999997

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=100.00  E-value=3.4e-50  Score=388.80  Aligned_cols=206  Identities=21%  Similarity=0.346  Sum_probs=190.1

Q ss_pred             ccccEEEEEECcEEEEEecCCCcccccEEEEecCC-CceEEEEeeeeCCceeEEEeccCCCCCC-CCCEEEecCCCcccc
Q psy17544         51 KGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRS-PRLVLEVAQHLGENTVRTIAMDGTEGLV-RGQVVADSGNPIKIP  128 (266)
Q Consensus        51 ~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~-~~l~~EVv~~l~~~~v~l~~~~~t~Gl~-~G~~V~~tg~~~~Vp  128 (266)
                      +.+|+|++|.|+++++++...+ .+++.|++...+ ..+.+||+++. ++.+.+++|+++.||+ .|++|.+||++++||
T Consensus        10 ~~~g~v~~v~g~~v~v~gl~~~-~~ge~v~i~~~~g~~~~geVv~~~-~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vp   87 (465)
T 3vr4_D           10 KEYRTIKEVVGPLMAVEKVSGV-KYEELIEVRMQNGEIRRGQVLEVQ-EDKAMVQIFEGTSGINLKNSSVRFLGHPLQLG   87 (465)
T ss_dssp             -CBCCEEEEETTEEEEESCCSC-CTTCEEEEECTTSCEEEEEEEEEE-SSEEEEEETTCCTTCCTTTCEEEECSSCCEEE
T ss_pred             ceEEEEEEEECCEEEEecCCCC-CcCCEEEEEcCCCCEEEEEEEEEe-CCeEEEEEecCccccccCCCEEEECCCcceee
Confidence            4689999999999999986544 899999996433 35899999965 5799999999999999 999999999999999


Q ss_pred             CChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHH
Q psy17544        129 VGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL  208 (266)
Q Consensus       129 vG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L  208 (266)
                      +|++|||||+|++|+|||+.+++..+.++|+++.||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus        88 vg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L  167 (465)
T 3vr4_D           88 VSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKEL  167 (465)
T ss_dssp             ECGGGTTEEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHH
T ss_pred             cchhhccceeccCCcccCCCCCCcccceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcChHHH
Confidence            99999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCc----EEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        209 IMELINNVAKAHGG----YSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       209 ~~~ii~~~a~~~~~----v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +++|++ +++++++    ++||++||||+||++||+++|.++|+|+      ||++|++++
T Consensus       168 ~~~Ia~-~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~------rtvvV~ats  221 (465)
T 3vr4_D          168 AAQIAR-QATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID------RSVMFMNLA  221 (465)
T ss_dssp             HHHHHH-HCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG------GEEEEEEET
T ss_pred             HHHHHH-HHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc------ceEEEEECC
Confidence            998877 5666444    9999999999999999999999999998      999999986

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=100.00  E-value=3.6e-50  Score=388.56  Aligned_cols=207  Identities=23%  Similarity=0.315  Sum_probs=190.3

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecCC-CceEEEEeeeeCCceeEEEeccCCCCCC-CCCEEEecCCCccc
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRS-PRLVLEVAQHLGENTVRTIAMDGTEGLV-RGQVVADSGNPIKI  127 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~-~~l~~EVv~~l~~~~v~l~~~~~t~Gl~-~G~~V~~tg~~~~V  127 (266)
                      .+.+|+|++|.|+++++++...+ .+++.|++...+ ..+.+||+++ +++.+.+++|+++.||+ .|++|.+||++++|
T Consensus         5 ~~~~g~V~~v~g~~v~v~gl~~~-~~ge~v~i~~~~g~~~~geVv~~-~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~v   82 (464)
T 3gqb_B            5 KKEYTGITYISGPLLFVENAKDL-AYGAIVDIKDGTGRVRGGQVIEV-SEEYAVIQVFEETTGLDLATTSVSLVEDVARL   82 (464)
T ss_dssp             CCCBCCEEEEETTEEEEESCTTS-CTTCEEEEECTTSCEEEEEEEEE-ESSEEEEEESSCCTTCCSSSCEEEEEESSCEE
T ss_pred             cceeeEEEEEECCEEEEecCCCC-CcCCEEEEEcCCCCEEEEEEEEE-eCCeEEEEEecCccccccCCCEEEECCCCcEE
Confidence            35689999999999999986554 899999996533 3589999996 45799999999999999 99999999999999


Q ss_pred             cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544        128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV  207 (266)
Q Consensus       128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~  207 (266)
                      |||++|||||+|++|+|||+.+++..++++||++.||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+
T Consensus        83 pvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~  162 (464)
T 3gqb_B           83 GVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANE  162 (464)
T ss_dssp             EECSTTTTEEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHHH
T ss_pred             EeChHhcCCEeccCCcccCCCccccCcceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCCCCchH
Confidence            99999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC-------c----EEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        208 LIMELINNVAKAHG-------G----YSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       208 L~~~ii~~~a~~~~-------~----v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |+++|++ ++++++       +    ++||++||||+||++||+++|.++|+++      |+++|++++
T Consensus       163 L~~~Ia~-~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~------rtvvv~~t~  224 (464)
T 3gqb_B          163 IAAQIAR-QATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS------RSVLFLNKA  224 (464)
T ss_dssp             HHHHHHH-HCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG------GEEEEEEET
T ss_pred             HHHHHHH-HHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc------ceEEEEECC
Confidence            9998877 455521       2    9999999999999999999999999998      999999986

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=100.00  E-value=9.2e-50  Score=388.73  Aligned_cols=211  Identities=24%  Similarity=0.420  Sum_probs=189.3

Q ss_pred             ccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEe
Q psy17544         41 HYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVAD  120 (266)
Q Consensus        41 ~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~  120 (266)
                      +|...  +..+.+|+|++|.|.++++++...+ .+++.|++.+   .+.+||+.+ +++.+.+++|+++.||+.|++|.+
T Consensus        18 ~~~~~--~~~~~~G~V~~v~g~i~~v~Gl~~~-~~gElv~~~~---~~~g~v~~l-~~d~v~~~~~~~~~gi~~G~~V~~   90 (513)
T 3oaa_A           18 QFNVV--SEAHNEGTIVSVSDGVIRIHGLADC-MQGEMISLPG---NRYAIALNL-ERDSVGAVVMGPYADLAEGMKVKC   90 (513)
T ss_dssp             --------CCTTEEEEEEEETTEEEEEECTTC-BTTCEEEETT---TEEEEEEEE-CSSCEEEEESSCCSSCCTTCEEEC
T ss_pred             hcCCC--CCceeEEEEEEEECcEEEEECCccC-CcCCEEEECC---CCEEEEEEe-eCCEEEEEEeCCccCCCCCCEEEE
Confidence            45442  3466789999999999999998655 8899999953   378999995 678999999999999999999999


Q ss_pred             cCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecC
Q psy17544        121 SGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG  200 (266)
Q Consensus       121 tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg  200 (266)
                      ||++++||||++|||||+|++|+|||+++++....++||+..||+|++|.++++||+||||+||+|+|||||||++|||+
T Consensus        91 tg~~~~VpvG~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~PigrGQR~~Ifg~  170 (513)
T 3oaa_A           91 TGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGD  170 (513)
T ss_dssp             CSCSSEEECSGGGTTCEEETTSCBTTCSCSCCCSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCBTTCBCEEEES
T ss_pred             cCCCCeEeeCHHHhccchhhcCcCccCCCCCCccceeecccCCCCccccCCcCcccccceeeeccccccccCCEEEeecC
Confidence            99999999999999999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        201 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       201 ~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +|+|||+|+.+++.|+ +.++.+|||++||||+||++||+++|.+.|+|+      ||++|++++
T Consensus       171 ~g~GKT~l~l~~I~n~-~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~------~tvvV~ata  228 (513)
T 3oaa_A          171 RQTGKTALAIDAIINQ-RDSGIKCIYVAIGQKASTISNVVRKLEEHGALA------NTIVVVATA  228 (513)
T ss_dssp             SSSSHHHHHHHHHHTT-SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCST------TEEEEEECT
T ss_pred             CCCCcchHHHHHHHhh-ccCCceEEEEEecCChHHHHHHHHHHhhcCccc------ceEEEEECC
Confidence            9999999976566666 344457999999999999999999999999998      999999986

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=100.00  E-value=3.4e-50  Score=390.05  Aligned_cols=209  Identities=20%  Similarity=0.294  Sum_probs=167.9

Q ss_pred             CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCC-CceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcc
Q psy17544         48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRS-PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK  126 (266)
Q Consensus        48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~-~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~  126 (266)
                      |-.+.+|+|++|.|++++++++.. +.+++.|++...+ ..+.+||+++ .++.+.+++|+++.||++|++|.+||++++
T Consensus         9 ~~~~~~g~V~~V~g~vv~v~g~~~-~~~ge~v~i~~~~g~~~~geV~~~-~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~   86 (469)
T 2c61_A            9 PMVKEYKTITQIAGPLIFVEKTEP-VGYNEIVNIKMGDGTVRRGQVLDS-SADIVVVQVFEGTGGLDKDCGVIFTGETLK   86 (469)
T ss_dssp             -------------CCEEEEECCSC-CCTTCEEEEECTTSCEEEEEEEEE-CSSEEEEEEC-------------CEEEBCE
T ss_pred             cccccccEEEEEECcEEEEeeCCC-CCcCCEEEEEeCCCCEEEEEEEEE-eCCEEEEEEeCCCcCCCCCCEEEEcCCCcE
Confidence            446779999999999999999864 3899999996422 3577999996 568999999999999999999999999999


Q ss_pred             ccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHH
Q psy17544        127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT  206 (266)
Q Consensus       127 VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT  206 (266)
                      ||+|++|||||+|++|+|||+.+++..+.++|+++.||+|++|.++++||+||||+||+|+|||||||++|||++|+|||
T Consensus        87 vpvg~~lLGRV~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt  166 (469)
T 2c61_A           87 LPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHN  166 (469)
T ss_dssp             EEECGGGTTCEEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHH
T ss_pred             EEccccceeeEEcccCCCCCCCCCCCccccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCHH
Confidence            99999999999999999999999988888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc----CCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        207 VLIMELINNVAKA----HGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       207 ~L~~~ii~~~a~~----~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +|+++|+++ +.+    +++++||++||||+||++||+++|.++|+|+      ||++|++++
T Consensus       167 ~Ll~~Ia~~-~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~------rtvvV~~ts  222 (469)
T 2c61_A          167 EIALQIARQ-ASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALE------RAVVFLNLA  222 (469)
T ss_dssp             HHHHHHHHH-CBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGG------GEEEEEEET
T ss_pred             HHHHHHHHH-HhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCcc------ceEEEEECC
Confidence            999999985 443    2359999999999999999999999999998      999999986

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=100.00  E-value=2.6e-49  Score=386.43  Aligned_cols=213  Identities=21%  Similarity=0.367  Sum_probs=188.9

Q ss_pred             cccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544         40 KHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA  119 (266)
Q Consensus        40 ~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~  119 (266)
                      .+|..+  +..+.+|+|++|.|.+++++++..+ .+++.|++.+  + +.+||++ ++++++.+++|+++.||+.|+.|.
T Consensus        17 ~~~~~~--~~~~~~G~V~~v~g~iv~v~gl~~~-~~ge~~~i~~--g-~~g~v~~-l~~~~v~~~~~~~~~gi~~G~~V~   89 (510)
T 2ck3_A           17 LGADTS--VDLEETGRVLSIGDGIARVHGLRNV-QAEEMVEFSS--G-LKGMSLN-LEPDNVGVVVFGNDKLIKEGDIVK   89 (510)
T ss_dssp             ---------CCSSEEEEEEEETTEEEEEECTTC-BTTCEEEETT--S-CEEEEEE-ECSSCEEEEESSCGGGCCTTCEEE
T ss_pred             HhcCCC--cceeEEeEEEEEECcEEEEeeCCCC-CCCCEEEECC--C-CeEEEEe-ccCCeEEEEEECCcccccCCCEEE
Confidence            466654  3355789999999999999998655 7899999954  2 4688888 577899999999999999999999


Q ss_pred             ecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544        120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG  199 (266)
Q Consensus       120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg  199 (266)
                      +||++++||||++|||||+|++|+|||+++++...+++||+.+||+|++|.++++||+||||+||+|+|||||||++|||
T Consensus        90 ~tg~~~~vpvg~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g  169 (510)
T 2ck3_A           90 RTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIG  169 (510)
T ss_dssp             ECCCCCEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEE
T ss_pred             EeCCcceeecCccceeeEEccCCcCcCCCCCCCccceeecccCCCCcccccccCccccccceeeccccccccCCEEEEec
Confidence            99999999999999999999999999999999888899999999999999999999999999999999999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHhc-------CCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        200 GAGVGKTVLIMELINNVAKA-------HGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       200 g~G~GKT~L~~~ii~~~a~~-------~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ++|+|||+|+.++|.|+++.       ++.+|||++||||+||++||+++|.+.|+|+      ||++|++++
T Consensus       170 ~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~------~tvvV~ata  236 (510)
T 2ck3_A          170 DRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMK------YTIVVSATA  236 (510)
T ss_dssp             STTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGG------GEEEEEECT
T ss_pred             CCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcc------cceEEEECC
Confidence            99999999966666666652       3358999999999999999999999999998      999999986

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=100.00  E-value=2.5e-49  Score=385.98  Aligned_cols=212  Identities=23%  Similarity=0.380  Sum_probs=186.3

Q ss_pred             cccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544         40 KHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA  119 (266)
Q Consensus        40 ~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~  119 (266)
                      ++|..+  +..+.+|+|++|.|.+++++++..+ .+++.|++.+  + +.+||+++ +++++.+++|+++.||+.|+.|.
T Consensus        17 ~~~~~~--~~~~~~G~V~~v~g~iv~v~gl~~~-~~ge~~~i~~--g-~~g~v~~l-~~~~v~~~~~~~~~gi~~G~~V~   89 (502)
T 2qe7_A           17 ENYEAD--LEVVEVGTVIQVGDGIARVHGLEKV-MAGELLEFEN--G-VMGMAQNL-EEDNVGVVILGPYTEIREGTQVK   89 (502)
T ss_dssp             ------------CEEEEEEEETTEEEEECCTTC-BTTEEEEETT--S-CEEEEEEE-ETTEEEEEECSCCSSCCTTCEEE
T ss_pred             HhcCCC--cceeEEEEEEEecCcEEEEEECCCC-CCCCEEEECC--C-CEEEEEEe-cCCeEEEEEecCccCCcCCCEEE
Confidence            466653  3355789999999999999998655 7899999954  2 46888884 67899999999999999999999


Q ss_pred             ecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544        120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG  199 (266)
Q Consensus       120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg  199 (266)
                      +||++++||||++|||||+|++|+|||+++++...+++|++.+||+|++|.++++||+||||+||+|+|||||||++|||
T Consensus        90 ~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg  169 (502)
T 2qe7_A           90 RTGRIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIG  169 (502)
T ss_dssp             EEEEESEEECSGGGTTCEECTTCCBSSCSCCCCCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCBTTCBCEEEE
T ss_pred             EeCCcceEEcccccceEEEccCCCCCCCCCCCCCCceeeccCCCCCcccccCCCCccccceeecccccccccCCEEEEEC
Confidence            99999999999999999999999999999999888899999999999999999999999999999999999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        200 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       200 g~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ++|+|||+|+.+++.|++ .++.+|||++||||+||++||+++|.+.|+|+      ||++|++++
T Consensus       170 ~~g~GKT~Lal~~I~~~~-~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~------~tvvV~ata  228 (502)
T 2qe7_A          170 DRQTGKTTIAIDTIINQK-GQDVICIYVAIGQKQSTVAGVVETLRQHDALD------YTIVVTASA  228 (502)
T ss_dssp             CSSSCHHHHHHHHHHGGG-SCSEEEEEEEESCCHHHHHHHHHHHHHTTCST------TEEEEEECT
T ss_pred             CCCCCchHHHHHHHHHhh-cCCcEEEEEECCCcchHHHHHHHHHhhCCCcc------eeEEEEECC
Confidence            999999999766666665 33347899999999999999999999999998      999999986

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=100.00  E-value=3.2e-49  Score=385.63  Aligned_cols=212  Identities=23%  Similarity=0.336  Sum_probs=188.3

Q ss_pred             cccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544         40 KHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA  119 (266)
Q Consensus        40 ~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~  119 (266)
                      ++|..+  +..+.+|+|++|.|.+++++++..+ .+++.|++.+  + +.+||++ ++++.+.+++|+++.||+.|+.|.
T Consensus        18 ~~~~~~--~~~~~~G~V~~v~g~iv~v~gl~~~-~~ge~~~i~~--g-~~g~v~~-l~~~~v~~~~~~~~~gi~~G~~V~   90 (507)
T 1fx0_A           18 EGYNRE--VKVVNTGTVLQVGDGIARIHGLDEV-MAGELVEFEE--G-TIGIALN-LESNNVGVVLMGDGLMIQEGSSVK   90 (507)
T ss_dssp             ---------CTTTEEEECCCCSSEEEEEECTTC-CTTCCEEETT--C-CEEEEEE-ECSSEEEEEECSCGGGCCTTCEEE
T ss_pred             HhccCC--cceeEEEEEEEEeCCEEEEEECCCc-cCCCEEEECC--C-ceEEEEe-ccCCeEEEEEecCccCCcCCCEEE
Confidence            466653  3355789999999999999998655 7899999964  2 4688888 577899999999999999999999


Q ss_pred             ecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544        120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG  199 (266)
Q Consensus       120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg  199 (266)
                      +||++++||||++|||||+|++|+|||+++++...+++|++.+||+|++|.++++||+||||+||+|+|||||||++|||
T Consensus        91 ~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg  170 (507)
T 1fx0_A           91 ATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIG  170 (507)
T ss_dssp             CCCCCCEEEESSSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEE
T ss_pred             EeCCcceeecCccceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccccccCCcccccceecccccccccCCEEEEec
Confidence            99999999999999999999999999999999888899999999999999999999999999999999999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        200 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       200 g~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ++|+|||+|+.+++.|+++ ++.+|||++||||+||++||+++|.+.|+|+      ||++|++++
T Consensus       171 ~~g~GKT~Lal~~I~~~~~-~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~------rtvvV~ata  229 (507)
T 1fx0_A          171 DRQTGKTAVATDTILNQQG-QNVICVYVAIGQKASSVAQVVTNFQERGAME------YTIVVAETA  229 (507)
T ss_dssp             SSSSSHHHHHHHHHHTCCT-TTCEEEEEEESCCHHHHHHHHHHTGGGTGGG------SEEEEEECT
T ss_pred             CCCCCccHHHHHHHHHhhc-CCcEEEEEEcCCCchHHHHHHHHHHhcCccc------cceEEEECC
Confidence            9999999997666666643 4458999999999999999999999999998      999999986

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=100.00  E-value=8.6e-49  Score=382.65  Aligned_cols=213  Identities=23%  Similarity=0.397  Sum_probs=191.6

Q ss_pred             cccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544         40 KHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA  119 (266)
Q Consensus        40 ~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~  119 (266)
                      ++|..+  +..+.+|+|++|.|.+++++++..+ .+++.|++.. ++ +.+||++ ++++.+.+++|+++.||+.|+.|.
T Consensus        29 ~~~~~~--~~~~~~G~V~~V~g~iv~v~gl~~~-~~gEl~~i~~-~g-~~g~v~~-l~~~~v~~~~~~~~~gi~~G~~V~  102 (515)
T 2r9v_A           29 KSFEEK--IDLEDTGKVIQVGDGIARAYGLNKV-MVSELVEFVE-TG-VKGVAFN-LEEDNVGIIILGEYKDIKEGHTVR  102 (515)
T ss_dssp             CTTCCC--SCTTTEEEEEEEETTEEEEEECTTC-CTTEEEEETT-TC-CEEEEEE-CCTTCEEEEEESCCTTCCTTCEEE
T ss_pred             HhcCCC--CcceeeeEEEEEECcEEEEecCCCC-CCCCEEEEec-CC-eEEEEEE-ecCCeEEEEEecCcccccCCCEEE
Confidence            467664  3455789999999999999998655 7899999942 22 4689888 577899999999999999999999


Q ss_pred             ecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544        120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG  199 (266)
Q Consensus       120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg  199 (266)
                      +||++++||+|++|||||+|++|+|||+++++...+++|++.+||+|++|.++++||+||||+||+|+|||||||++|||
T Consensus       103 ~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g  182 (515)
T 2r9v_A          103 RLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIG  182 (515)
T ss_dssp             EEEEECEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHHSCEETTCBEEEEE
T ss_pred             EeCCcceeecCccceeeEEcCCCCCcCCCCCCCccceeecccCCCCcccccCCCcchhcCccccccccccccCCEEEEEc
Confidence            99999999999999999999999999999999888899999999999999999999999999999999999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        200 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       200 g~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ++|+|||+|+.+++.|+++ ++.+|||++||||+|||+||+++|.+.|+|+      ||++|++++
T Consensus       183 ~~g~GKT~Lal~~I~~~~~-~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~------rtvvV~ata  241 (515)
T 2r9v_A          183 DRQTGKTAIAIDTIINQKG-QGVYCIYVAIGQKKSAIARIIDKLRQYGAME------YTTVVVASA  241 (515)
T ss_dssp             ETTSSHHHHHHHHHHTTTT-TTEEEEEEEESCCHHHHHHHHHHHHHTTGGG------GEEEEEECT
T ss_pred             CCCCCccHHHHHHHHHhhc-CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcc------eeEEEEECC
Confidence            9999999997666665653 3347899999999999999999999999998      999999986

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=100.00  E-value=9.3e-47  Score=366.44  Aligned_cols=207  Identities=65%  Similarity=1.039  Sum_probs=194.9

Q ss_pred             ccEEEEEECcEEEEEecC-CCcccccEEEEec-C--CC----ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCC
Q psy17544         53 NGRVVAVIGAVVDVQFDH-DLPPILNALEVEG-R--SP----RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP  124 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~-~~p~ig~~~~v~~-~--~~----~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~  124 (266)
                      +|+|++|.|++++++|+. ..|.+++.|++.. .  +.    .+.+||+++++++.+++++|+++.||++|++|.+||++
T Consensus         3 ~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~   82 (473)
T 1sky_E            3 RGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAP   82 (473)
T ss_dssp             EEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEE
T ss_pred             ceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcCCc
Confidence            699999999999999985 4779999999965 2  22    58999999899999999999999999999999999999


Q ss_pred             ccccCChhhhhhhhcccCccccCCCCCCCC-CccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544        125 IKIPVGAETLGRIINVIGEPIDERGPIDTD-KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV  203 (266)
Q Consensus       125 ~~VpvG~~lLGRViD~~G~PlD~~~~~~~~-~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~  203 (266)
                      +++|+|++|||||+|++|+|||+.+++..+ ++||++.+||+|++|.++++||+||||+||.|+|++||||++|||++|+
T Consensus        83 ~~vpvg~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~sGv  162 (473)
T 1sky_E           83 ISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGV  162 (473)
T ss_dssp             CEEECSGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCSSS
T ss_pred             ceeeccccceeeEEeecCCccCcccccCCCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEEEEECCCCC
Confidence            999999999999999999999999998877 7899999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        204 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       204 GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |||||+.+++++++..+++++||++||||++|++||+++|.+.++++      |+++|++++
T Consensus       163 GKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~------~tvvv~~~~  218 (473)
T 1sky_E          163 GKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVIS------KTAMVFGQM  218 (473)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGG------GEEEEEECT
T ss_pred             CccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcc------eeEEEEEcC
Confidence            99999999999877666679999999999999999999999999998      999999986

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=100.00  E-value=6.7e-46  Score=366.00  Aligned_cols=199  Identities=21%  Similarity=0.365  Sum_probs=173.1

Q ss_pred             ccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544         53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE  132 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~  132 (266)
                      .|+|++|.|++++++++..+ .+++.|++.  +..+.+||+++.+ +.+.+++|+++.||++|++|++||++++|++|++
T Consensus        10 ~G~V~~V~G~vv~v~g~~~~-~~gE~v~v~--~~~l~gEVi~~~~-d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~   85 (600)
T 3vr4_A           10 IGKIIKVSGPLVMAENMSEA-SIQDMCLVG--DLGVIGEIIEMRQ-DVASIQVYEETSGIGPGEPVRSTGEALSVELGPG   85 (600)
T ss_dssp             CEEEEEEETTEEEEESCTTS-CTTCEEEET--TTTEEEEEEEEET-TEEEEEESSCCTTCCTTCEEEECSSSSEEEESTT
T ss_pred             ceEEEEEECcEEEEEcCCCC-ccCCEEEEC--CCcEEEEEEEEcC-CcEEEEEccCCCCCCCCCEEEECCCCCEEEeCHH
Confidence            69999999999999998754 899999994  3468999999765 6888999999999999999999999999999999


Q ss_pred             hhhhhhcccCccccCC----C-----------CCCCCCc-----------------------------------------
Q psy17544        133 TLGRIINVIGEPIDER----G-----------PIDTDKS-----------------------------------------  156 (266)
Q Consensus       133 lLGRViD~~G~PlD~~----~-----------~~~~~~~-----------------------------------------  156 (266)
                      |||||+|++|+|||+.    +           +++.++.                                         
T Consensus        86 lLGrV~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~  165 (600)
T 3vr4_A           86 IISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGT  165 (600)
T ss_dssp             CTTCEECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEE
T ss_pred             HHhhhhCcCCCcccccccccCccccccCCcCCCCCcccccccCcccccCCEecCCceEEEEecCCceeeeeecCCCCCce
Confidence            9999999999999986    4           2332222                                         


Q ss_pred             --------------------------------cccccCcccccccccccccccccceEeecccccccCceeeeecCCCcc
Q psy17544        157 --------------------------------AAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG  204 (266)
Q Consensus       157 --------------------------------~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~G  204 (266)
                                                      ||++. ||++++|.++++||+||||+||+|+||+||||++||||+|+|
T Consensus       166 v~~i~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~~-~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~G  244 (600)
T 3vr4_A          166 VQKIESGSFTIDDPICVIETEQGLKELTMMQKWPVRR-GRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAG  244 (600)
T ss_dssp             EEEECCEEECTTSCCEEEEETTEEEEECSCEEEETTS-CCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSC
T ss_pred             EEEecCCcceeceeEEEEeccCCcccccccccccccC-CCchhhccCCCceecccchhhhccCCccCCCEEeeecCCCcc
Confidence                                            22222 345678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHh-------cCccccCCCCCceEEEeecc
Q psy17544        205 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE-------SGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       205 KT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~-------~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ||+|+++|+++ +++  +++||++||||+||++||+++|++       .++|+      ||++|++|+
T Consensus       245 KT~L~~~ia~~-~~~--~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~------rtvvV~~ts  303 (600)
T 3vr4_A          245 KTVVQHQIAKW-SDV--DLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLME------RTVLIANTS  303 (600)
T ss_dssp             HHHHHHHHHHH-SSC--SEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGG------GEEEEEEET
T ss_pred             HHHHHHHHHhc-cCC--CEEEEEEecccHHHHHHHHHHHHhhccccccccccc------ceEEEEECC
Confidence            99999999874 444  599999999999999999999987       34555      999999986

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=100.00  E-value=1.7e-45  Score=361.88  Aligned_cols=206  Identities=25%  Similarity=0.324  Sum_probs=172.3

Q ss_pred             ccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544         53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE  132 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~  132 (266)
                      .|+|++|.|++++++++... .+++.|++.  +..+.+||+++.+ +.+.+++|+++.||++|++|.+||++++||+|++
T Consensus         3 ~G~V~~V~G~vv~v~g~~~~-~~gE~v~v~--~~~l~gEVi~~~~-d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~   78 (578)
T 3gqb_A            3 QGVIQKIAGPAVIAKGMLGA-RMYDISKVG--EEGLVGEIIRLDG-DTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPG   78 (578)
T ss_dssp             EEEEEEEETTEEEEESCTTC-CTTEEEEET--TTTEEEEEEEEET-TEEEEEESSCCTTCCTTCEEEEEEEESEEEESTT
T ss_pred             eeEEEEEECCEEEEEcCCCC-ccCCEEEEC--CCcEEEEEEEEcC-CcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHH
Confidence            69999999999999998754 899999994  3468999999765 6788999999999999999999999999999999


Q ss_pred             hhhhhhcccCccccCC----C----------CCCCCCcc-------------------------cccc------------
Q psy17544        133 TLGRIINVIGEPIDER----G----------PIDTDKSA-------------------------AIHA------------  161 (266)
Q Consensus       133 lLGRViD~~G~PlD~~----~----------~~~~~~~~-------------------------pI~~------------  161 (266)
                      |||||+|++|+|||+.    +          +++.++.|                         ++|.            
T Consensus        79 lLGrV~DglG~PlD~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~  158 (578)
T 3gqb_A           79 MLNGIYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVK  158 (578)
T ss_dssp             CTTCEECTTSCBHHHHHHHHCSBCCTTCCCCSSCSSSCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEE
T ss_pred             HhhhhhCcCCCcccccccccCccccccccCCCcCcccccccccccccCccccccceeeeecccccceecccCCCcCceeE
Confidence            9999999999999987    3          22222222                         2222            


Q ss_pred             --------------------------------CcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHH
Q psy17544        162 --------------------------------DAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI  209 (266)
Q Consensus       162 --------------------------------~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~  209 (266)
                                                      .|+++++|.++++||+||||+||+|+|||||||++||||+|+|||+|+
T Consensus       159 ~i~~~G~~~v~~~i~~~~~g~~i~~~~~wPv~~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l~  238 (578)
T 3gqb_A          159 EVKPAGEYTVEEPVVVLEDGTELKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQ  238 (578)
T ss_dssp             EECCSEEECTTSCSEEETTCCEECSCEEEETTSCCCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHHH
T ss_pred             EeccCCcccccceeEEeecCccccccccccccCCCChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHHH
Confidence                                            113456899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccc-cCCCCCceEEEeecc
Q psy17544        210 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS-LKDKSSKVNFLFNSR  265 (266)
Q Consensus       210 ~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~-~~~~~~~~~~v~~q~  265 (266)
                      ++|+++ +++  +++||++||||+||++||+++|+++.--+ ..+.++|+++|++++
T Consensus       239 ~~ia~~-~~~--~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~ts  292 (578)
T 3gqb_A          239 QSLAKW-SNA--DVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTS  292 (578)
T ss_dssp             HHHHHH-SSC--SEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEET
T ss_pred             HHHHhc-cCC--CEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECC
Confidence            999874 444  59999999999999999999998721100 122334999999986

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=100.00  E-value=1.1e-45  Score=363.31  Aligned_cols=200  Identities=24%  Similarity=0.363  Sum_probs=122.1

Q ss_pred             cccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCCh
Q psy17544         52 GNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGA  131 (266)
Q Consensus        52 ~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~  131 (266)
                      ..|+|++|.|++++++++..+ .+++.|++..  ..+.+||+++ +++.+.+++|+++.||+.|++|.+||++++|++|+
T Consensus         3 ~~G~V~~V~G~iv~~~g~~~~-~~gElv~v~~--~~l~geVi~l-~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG~   78 (588)
T 3mfy_A            3 AKGRIIRVTGPLVVADGMKGA-KMYEVVRVGE--LGLIGEIIRL-EGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGP   78 (588)
T ss_dssp             --------------------------------------------------------------CCCCCSSSSSCCEEEEST
T ss_pred             ceeEEEEEECCEEEEEcCCCC-ccCCEEEEcC--CceEEEEEEe-cCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeCH
Confidence            369999999999999998755 7899999943  4589999996 56899999999999999999999999999999999


Q ss_pred             hhhhhhhcccCccccCCCCC--------------CCCC------------------------------------------
Q psy17544        132 ETLGRIINVIGEPIDERGPI--------------DTDK------------------------------------------  155 (266)
Q Consensus       132 ~lLGRViD~~G~PlD~~~~~--------------~~~~------------------------------------------  155 (266)
                      +|||||+|++|+|||+.++.              +.++                                          
T Consensus        79 gLLGrV~DglgrPLd~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~  158 (588)
T 3mfy_A           79 RLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGE  158 (588)
T ss_dssp             TCTTCEEETTCCSSSSCCCCCSSSCCCCCCCCSSCSSCCEEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEE
T ss_pred             HHHhhccCCCCCcccCcccccccccccccccCccccccccccccccccCcccccCceEEEEecccceeeeeecCCCCCce
Confidence            99999999999999997531              1111                                          


Q ss_pred             ---------------------------------ccccccCcccccccccccccccccceEeecccccccCceeeeecCCC
Q psy17544        156 ---------------------------------SAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG  202 (266)
Q Consensus       156 ---------------------------------~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G  202 (266)
                                                       +||++. |+++++|.++++||+||||+||+|+|||||||++|||++|
T Consensus       159 v~~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~-~~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g  237 (588)
T 3mfy_A          159 IVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRV-KRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAG  237 (588)
T ss_dssp             EEEECCSEEECTTSEEEEEECTTCCEEEEESCEEEETTS-CCCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCS
T ss_pred             EEEeccCCcccccceEEEEecCCCccccccccccccccC-CCchhhhccCCcccccCcchhhccCCcccCCeEEeecCCC
Confidence                                             133332 3345789999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHh-------cCccccCCCCCceEEEeecc
Q psy17544        203 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE-------SGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       203 ~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~-------~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +|||+|+++|+++ +++  +++||++||||+||++||+++|++       .++++      ||++|++++
T Consensus       238 ~GKT~L~~~ia~~-~~~--~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~------rtvvV~~ts  298 (588)
T 3mfy_A          238 SGKTVTQHQLAKW-SDA--QVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLME------RTVLIANTS  298 (588)
T ss_dssp             HHHHHHHHHHHHH-SSC--SEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGG------GEEEEECCT
T ss_pred             CCHHHHHHHHHhc-cCC--CEEEEEEecccHHHHHHHHHHHHHhccccccccccc------ceEEEEECC
Confidence            9999999998874 444  599999999999999999999987       34555      999999986

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=100.00  E-value=5.1e-36  Score=288.90  Aligned_cols=204  Identities=23%  Similarity=0.383  Sum_probs=179.5

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecCC-C---ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCC--
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRS-P---RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGN--  123 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~-~---~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~--  123 (266)
                      .+.+|+|++|.|.+++++|+ . +.+++.|++...+ .   .+.+||++ ++++.+.+++|+++.||++|+.|.+||+  
T Consensus         7 ~~~~g~v~~v~g~~~~~~~~-~-~~~~e~~~~~~~~~~~~~~~~~ev~~-~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~   83 (438)
T 2dpy_A            7 VRRYGRLTRATGLVLEATGL-Q-LPLGATCIIERQDGPETKEVESEVVG-FNGQRLFLMPLEEVEGILPGARVYARNGHG   83 (438)
T ss_dssp             CCCCEEEEECSSSSEEEESC-C-CCSSCEEEEEECSTTSCEEEEEEEEE-CCTTCEEEEESSCCTTCCTTEEEEEC----
T ss_pred             cceeeEEEEEECcEEEEEeC-C-CCCCCEEEEecCCCCccccEEEEEEE-EcCCEEEEEEccCCCCCCCCCEEEECCCcc
Confidence            56689999999999999998 3 4899999997522 2   58999999 5778999999999999999999999999  


Q ss_pred             -----CccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeee
Q psy17544        124 -----PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLF  198 (266)
Q Consensus       124 -----~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIf  198 (266)
                           ++++++|+++||||+|++|+|+|+.+++....++|++.++|++.++..+++++.||+++||.++|+++||+++||
T Consensus        84 ~~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~Iv  163 (438)
T 2dpy_A           84 DGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLF  163 (438)
T ss_dssp             ------CEEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEE
T ss_pred             ccccccEEEEcchhhhhhhhhccCCccCCCCCccccccccccCCCCCceEEeccceecCCCceEEeeeEEecCCCEEEEE
Confidence                 999999999999999999999999988887778999999999999999999999999999999999999999999


Q ss_pred             cCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        199 GGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       199 gg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |++|+|||||+.+|++. .+  .+..+|.++|+|++|+++|.+++.+.+.++      +++.|+.|.
T Consensus       164 G~sGsGKSTLl~~Iag~-~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~------r~i~~v~q~  221 (438)
T 2dpy_A          164 AGSGVGKSVLLGMMARY-TR--ADVIVVGLIGERGREVKDFIENILGPDGRA------RSVVIAAPA  221 (438)
T ss_dssp             ECTTSSHHHHHHHHHHH-SC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHH------TEEEEEECT
T ss_pred             CCCCCCHHHHHHHHhcc-cC--CCeEEEEEeceecHHHHHHHHhhccccccC------ceEEEEECC
Confidence            99999999999888874 33  347899999999999999998776666565      777777763

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.94  E-value=1.7e-27  Score=223.12  Aligned_cols=132  Identities=30%  Similarity=0.469  Sum_probs=117.5

Q ss_pred             CccccCChhhhhhhhcccCccccCCC-CCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCC
Q psy17544        124 PIKIPVGAETLGRIINVIGEPIDERG-PIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG  202 (266)
Q Consensus       124 ~~~VpvG~~lLGRViD~~G~PlD~~~-~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G  202 (266)
                      +++||||++|||||+|++|+|||+.+ ++...+++|++.+||++.+|..+++++.||+++||.++||++||+++|||++|
T Consensus         2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nG   81 (347)
T 2obl_A            2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSG   81 (347)
T ss_dssp             CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTT
T ss_pred             CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCC
Confidence            68999999999999999999999998 88877889999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        203 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       203 ~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      +|||||+.+|++. .+  ++..+|.++|||++|+++|+..+.+ +.++      ++++++.|+
T Consensus        82 aGKTTLl~~I~g~-~~--~~~g~i~~~G~~~~ev~~~i~~~~~-~~~~------~~v~~~~~~  134 (347)
T 2obl_A           82 VGKSTLLGMICNG-AS--ADIIVLALIGERGREVNEFLALLPQ-STLS------KCVLVVTTS  134 (347)
T ss_dssp             SSHHHHHHHHHHH-SC--CSEEEEEEESCCHHHHHHHHTTSCH-HHHT------TEEEEEECT
T ss_pred             CCHHHHHHHHhcC-CC--CCEEEEEEecccHHHHHHHHHhhhh-hhhh------ceEEEEECC
Confidence            9999999988874 33  3588999999999999999876333 3444      778887764

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=99.92  E-value=1.5e-26  Score=220.24  Aligned_cols=132  Identities=18%  Similarity=0.218  Sum_probs=109.0

Q ss_pred             CCCCCCCCCEEEecCCCccccCChhhhhhhhcccCccccCCC-CCCCCCccccccCccccccccccc-ccccccceEeec
Q psy17544        108 GTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERG-PIDTDKSAAIHADAPEFVEMSVEQ-EILVTGIKVVDL  185 (266)
Q Consensus       108 ~t~Gl~~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~~~-~~~~~~~~pI~~~~p~~~~R~~~~-e~l~TGIraID~  185 (266)
                      ...+|+.||.|...-++.+-.--...|+||.+.+|++.+... ....++     ..|++|++|.+++ +|++||+|+||+
T Consensus        94 r~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~~~~r~~fe~-----l~Pi~P~~R~~le~e~~~tGiraID~  168 (427)
T 3l0o_A           94 RKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEAVNDRVNFDN-----LTPDYPRERFILETDPKIYSTRLIDL  168 (427)
T ss_dssp             HHTTCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC----CCCCGGG-----SCEECCCSBCCCCCSTTCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEEeCCCCCcccccceEEEecCCCChHHhcccccccc-----CCCCCchhhccccccchhccchhhhh
Confidence            356899999999988777655445678999999999887632 112222     2366999999998 999999999999


Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHhH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEMI  244 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l~  244 (266)
                      |+|||||||++|||++|+|||+|+++|+++.+++|.+ .|||++||||++||+||++++.
T Consensus       169 l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~  228 (427)
T 3l0o_A          169 FAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTN  228 (427)
T ss_dssp             HSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCC
T ss_pred             cccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhC
Confidence            9999999999999999999999999999986655655 6899999999999999999986

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=99.85  E-value=3.9e-22  Score=190.05  Aligned_cols=130  Identities=17%  Similarity=0.154  Sum_probs=95.0

Q ss_pred             CCCCCCCCEEEecCCCccccCChhhhhhhhcccCccccC-CCCCCCCCccccccCccccccccccc----ccccccceEe
Q psy17544        109 TEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDE-RGPIDTDKSAAIHADAPEFVEMSVEQ----EILVTGIKVV  183 (266)
Q Consensus       109 t~Gl~~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~-~~~~~~~~~~pI~~~~p~~~~R~~~~----e~l~TGIraI  183 (266)
                      ..+|+.||.|...-++.+=.--..-|-++-...|.+.+. .+.+..+...|+     +|.+|..++    +|++||+|+|
T Consensus        91 ~~~lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~~~pe~~~~ri~Fe~ltp~-----yP~er~~Le~~~~~~~~tGiraI  165 (422)
T 3ice_A           91 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPL-----HANSRLRMERGNGSTEDLTARVL  165 (422)
T ss_dssp             HHTCCTTCEEEEEEECCCSSCCSEEEEEEEEESSSCHHHHTTSCCTTTSCEE-----SCCSBCCCCCTTCCTTHHHHHHH
T ss_pred             hcCCCCCCEEEEEEeCCCccchHHHHhccCcccCCChhhhcCCceecccccc-----CCCCccccccCCCCcccccceee
Confidence            457889999887654443211111222333334444432 233344444433     566777777    8999999999


Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHh
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEM  243 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l  243 (266)
                      |+++|+++|||++|||++|+|||||+++|+++.+++|++ .|||++||||++||+||++++
T Consensus       166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~  226 (422)
T 3ice_A          166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV  226 (422)
T ss_dssp             HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC
T ss_pred             eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh
Confidence            999999999999999999999999999999877666655 699999999999999999887

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.88  E-value=1.1e-05  Score=68.88  Aligned_cols=65  Identities=31%  Similarity=0.450  Sum_probs=51.3

Q ss_pred             ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHH
Q psy17544        174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND  238 (266)
Q Consensus       174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~e  238 (266)
                      +.+.||+..+|-++.  +-+|+=+.|.|++|+|||+|+.+++.|.+...+..++|.-.-+..+++.+
T Consensus        10 ~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~   76 (251)
T 2zts_A           10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRR   76 (251)
T ss_dssp             CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHH
T ss_pred             CeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHH
Confidence            347899999999997  88999999999999999999999887654443345666666666555443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.86  E-value=1.2e-05  Score=67.51  Aligned_cols=61  Identities=26%  Similarity=0.336  Sum_probs=46.0

Q ss_pred             ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchH
Q psy17544        174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE  235 (266)
Q Consensus       174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rE  235 (266)
                      +.+.||++.+|-++.  +-+|+-++|.|++|+|||||+.+++.+.+... .-++|...-+...+
T Consensus         3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~-~~v~~~~~~~~~~~   65 (235)
T 2w0m_A            3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG-DPCIYVTTEESRDS   65 (235)
T ss_dssp             CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT-CCEEEEESSSCHHH
T ss_pred             ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC-CeEEEEEcccCHHH
Confidence            457899999999985  88999999999999999999999987654333 33444443333333

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.62  E-value=1.4e-05  Score=67.50  Aligned_cols=43  Identities=33%  Similarity=0.325  Sum_probs=38.4

Q ss_pred             ccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        174 EILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       174 e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +.+.||+..+|-++  -+-+|+-++|+|++|+|||||+..++...
T Consensus         5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A            5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999877  68899999999999999999999988643

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.62  E-value=3.9e-05  Score=64.31  Aligned_cols=39  Identities=33%  Similarity=0.396  Sum_probs=36.8

Q ss_pred             ccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHH
Q psy17544        176 LVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       176 l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.||+..+|-++.  +-+|+-+.|.|++|+|||||+.+++.
T Consensus         2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A            2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999995  99999999999999999999999987

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.61  E-value=4.3e-05  Score=65.06  Aligned_cols=62  Identities=26%  Similarity=0.345  Sum_probs=46.4

Q ss_pred             ccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHH
Q psy17544        174 EILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG  236 (266)
Q Consensus       174 e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv  236 (266)
                      +.+.||++.+|-++  -+-+|+-+.|.|++|+|||+|+.+++.+.+.. +.-++|...-+..+++
T Consensus         3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~~~~~   66 (247)
T 2dr3_A            3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEHPVQV   66 (247)
T ss_dssp             CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSCHHHH
T ss_pred             ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCCHHHH
Confidence            35789999999987  47799999999999999999999998876543 3345554443333333

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.57  E-value=5.1e-05  Score=64.60  Aligned_cols=42  Identities=29%  Similarity=0.320  Sum_probs=38.7

Q ss_pred             ccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        174 EILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       174 e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+.||+..+|-++  .+-+|+-++|.|++|+|||||+.+++.+
T Consensus         4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A            4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            56889999999999  4889999999999999999999999875

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.25  E-value=0.00013  Score=67.89  Aligned_cols=55  Identities=13%  Similarity=0.207  Sum_probs=44.9

Q ss_pred             ccccccceEeecccc------cccCceeeeecCCCccHHHHHHHHHHHHHhcC-CcEEEEEee
Q psy17544        174 EILVTGIKVVDLLAP------YAKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGV  229 (266)
Q Consensus       174 e~l~TGIraID~L~p------igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~-~~v~V~alI  229 (266)
                      +.+.||+..+|.++.      +-+| ++.|+|++|+|||+|+.+++.+.++.. +..++|.-.
T Consensus         5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~   66 (333)
T 3io5_A            5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS   66 (333)
T ss_dssp             -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            457899999999998      7899 999999999999999999998765431 457777543

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.18  E-value=0.0003  Score=62.57  Aligned_cols=48  Identities=21%  Similarity=0.209  Sum_probs=39.5

Q ss_pred             ccccc-cceEeecc-cccccCceeeeecCCCccHHHHHHHHHHHHHhcCC
Q psy17544        174 EILVT-GIKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG  221 (266)
Q Consensus       174 e~l~T-GIraID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~  221 (266)
                      .-+.| |+.++|-+ +.+-+|+-++|.|++|+|||||+.+++.+.+..++
T Consensus        15 ~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G   64 (296)
T 1cr0_A           15 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG   64 (296)
T ss_dssp             CCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred             CCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence            45678 99888755 46889999999999999999999999987654434

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.06  E-value=0.00034  Score=63.67  Aligned_cols=44  Identities=32%  Similarity=0.346  Sum_probs=40.0

Q ss_pred             cccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        173 QEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       173 ~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.+.||+..+|-++  -+-+|+-+.|+|++|+|||+|+.+++.+.
T Consensus        86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A           86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            567899999999998  58899999999999999999999999864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.00  E-value=0.00084  Score=59.28  Aligned_cols=47  Identities=23%  Similarity=0.344  Sum_probs=39.7

Q ss_pred             cccccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        171 VEQEILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       171 ~~~e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      ...+.+.||+..+|-++. +-+|+-+.|+|++|+|||||+.+++...+
T Consensus         8 ~~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A            8 NILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             CHHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CHHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            346778899998887764 55999999999999999999999987654

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.97  E-value=0.0004  Score=64.97  Aligned_cols=53  Identities=32%  Similarity=0.606  Sum_probs=43.7

Q ss_pred             ccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544        174 EILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  227 (266)
Q Consensus       174 e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a  227 (266)
                      +.+.||+..+|-++.   +-+|.-+.|+|++|+|||||+.+++.+.+. .+..++|.
T Consensus        40 ~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyI   95 (356)
T 3hr8_A           40 EVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFI   95 (356)
T ss_dssp             CEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred             ceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEE
Confidence            567899999999998   779999999999999999999999987543 33344443

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.93  E-value=0.00048  Score=63.95  Aligned_cols=56  Identities=25%  Similarity=0.461  Sum_probs=44.8

Q ss_pred             cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544        173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV  229 (266)
Q Consensus       173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI  229 (266)
                      .+.+.||+..+|-++.   +-+|.-+.|+|++|+|||||+.+++.+.++. +..++|.-.
T Consensus        39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~   97 (349)
T 2zr9_A           39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDA   97 (349)
T ss_dssp             CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred             CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEC
Confidence            4578999999999987   5599999999999999999999999876543 334455443

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.88  E-value=0.00087  Score=61.67  Aligned_cols=44  Identities=25%  Similarity=0.154  Sum_probs=40.1

Q ss_pred             cccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        173 QEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       173 ~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.+.||+..+|-++  -+-+|+-+.|+|++|+|||+|+.+++.+.
T Consensus       101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999998  48899999999999999999999999864

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.82  E-value=0.0007  Score=64.16  Aligned_cols=48  Identities=31%  Similarity=0.299  Sum_probs=41.4

Q ss_pred             cccccccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        169 MSVEQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       169 R~~~~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +......+.||+..+|-++  -+-+|+-+.|+|++|+|||||+.+++.+.
T Consensus       153 ~~~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~  202 (400)
T 3lda_A          153 RRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTC  202 (400)
T ss_dssp             HHHTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             hhccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence            3334578999999999998  58899999999999999999999887653

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.82  E-value=0.00071  Score=61.46  Aligned_cols=46  Identities=15%  Similarity=0.271  Sum_probs=40.1

Q ss_pred             ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544        174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKA  219 (266)
Q Consensus       174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~  219 (266)
                      ..+.||+..+|-++- +-+|+-+.|.|.+|+|||+|+.+++.+.+..
T Consensus        49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~   95 (315)
T 3bh0_A           49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN   95 (315)
T ss_dssp             CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            467899999998874 7799999999999999999999999886543

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.78  E-value=0.00079  Score=62.76  Aligned_cols=46  Identities=24%  Similarity=0.420  Sum_probs=41.1

Q ss_pred             cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544        173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAK  218 (266)
Q Consensus       173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~  218 (266)
                      .+.+.||+..+|-++.   +-+|.-+.|.|++|+|||+|+.+++.+.++
T Consensus        41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~   89 (356)
T 1u94_A           41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR   89 (356)
T ss_dssp             CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4578899999999987   779999999999999999999999987654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.73  E-value=0.00038  Score=64.43  Aligned_cols=46  Identities=30%  Similarity=0.291  Sum_probs=40.3

Q ss_pred             cccccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        171 VEQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       171 ~~~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ...+.+.||+..+|-++  .+-+|+-+.|+|++|+|||||+.+++.+.
T Consensus       108 ~~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          108 ATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             HTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            33567899999999985  57799999999999999999999998764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.67  E-value=0.0011  Score=59.94  Aligned_cols=44  Identities=20%  Similarity=0.118  Sum_probs=39.8

Q ss_pred             ccccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        172 EQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       172 ~~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..+.+.||+..+|-++  -+-+|+-+.|+|++|+|||+|+.+++.+
T Consensus        76 ~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           76 TVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999998  4779999999999999999999999986

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.64  E-value=0.0014  Score=62.44  Aligned_cols=48  Identities=23%  Similarity=0.354  Sum_probs=41.5

Q ss_pred             ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCC
Q psy17544        174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG  221 (266)
Q Consensus       174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~  221 (266)
                      ..+.||+..+|-++- +-+|+-+.|.|++|+|||+|+.+++.+.+..++
T Consensus       184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g  232 (454)
T 2r6a_A          184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN  232 (454)
T ss_dssp             CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence            568899999998873 779999999999999999999999998764433

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.59  E-value=0.0011  Score=54.36  Aligned_cols=29  Identities=28%  Similarity=0.363  Sum_probs=24.2

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |..+.+|+.++|.|++|+|||||+..++.
T Consensus         3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A            3 MTDDLGGNILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred             ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence            45688999999999999999999998865

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.59  E-value=0.0013  Score=54.40  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=23.5

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+.+|+-++|.|++|+|||||+..|+..
T Consensus         3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            3 AMNKANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            3568999999999999999999988763

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.59  E-value=0.0012  Score=61.74  Aligned_cols=55  Identities=27%  Similarity=0.468  Sum_probs=44.4

Q ss_pred             cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544        173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  228 (266)
Q Consensus       173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al  228 (266)
                      .+.+.||+..+|.++.   +-+|.-+.|+|++|+|||+|+.+++.+.++. +..++|.-
T Consensus        52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~  109 (366)
T 1xp8_A           52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFID  109 (366)
T ss_dssp             CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred             CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEE
Confidence            4678899999999997   6699999999999999999999999876543 23344443

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.57  E-value=0.0012  Score=56.62  Aligned_cols=31  Identities=29%  Similarity=0.358  Sum_probs=23.3

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus        16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             ------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3366789999999999999999999988764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.54  E-value=0.0019  Score=52.88  Aligned_cols=29  Identities=28%  Similarity=0.494  Sum_probs=25.4

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.+|+-++|+|++|+|||+|+..+++..
T Consensus        34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           34 NPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            35679999999999999999999888764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.51  E-value=0.0015  Score=55.19  Aligned_cols=28  Identities=32%  Similarity=0.421  Sum_probs=23.0

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++-+|+.++|+|++|+|||||+..|+.-
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            7899999999999999999999987753

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.43  E-value=0.0021  Score=60.96  Aligned_cols=59  Identities=22%  Similarity=0.143  Sum_probs=44.2

Q ss_pred             ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCc
Q psy17544        174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT  233 (266)
Q Consensus       174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~  233 (266)
                      ..+.||+..+|-++. +-+|+-+.|.|.+|+|||+|+.+++.+.+..++.-++| ...|-.
T Consensus       181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~-~slE~~  240 (444)
T 2q6t_A          181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGI-YSLEMP  240 (444)
T ss_dssp             --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE-EESSSC
T ss_pred             CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEE-EECCCC
Confidence            567899999998874 67999999999999999999999999876433333333 334433

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.32  E-value=0.0024  Score=61.94  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=35.9

Q ss_pred             ccccccceEeecc-c-ccccCceeeeecCCCccHHHHHHHHH-HHH
Q psy17544        174 EILVTGIKVVDLL-A-PYAKGGKIGLFGGAGVGKTVLIMELI-NNV  216 (266)
Q Consensus       174 e~l~TGIraID~L-~-pigkGQr~gIfgg~G~GKT~L~~~ii-~~~  216 (266)
                      +.+.||+.++|-+ + .+-+|+.++|.|++|+|||||+.+++ .+.
T Consensus        19 ~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl   64 (525)
T 1tf7_A           19 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI   64 (525)
T ss_dssp             CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5577999999765 4 78899999999999999999999853 444

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.30  E-value=0.0017  Score=56.63  Aligned_cols=34  Identities=15%  Similarity=0.290  Sum_probs=28.2

Q ss_pred             eEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .++ |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            344 4447899999999999999999999987654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.29  E-value=0.0026  Score=52.57  Aligned_cols=28  Identities=32%  Similarity=0.396  Sum_probs=23.6

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+.+|..++|.|++|+|||||+..++..
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999999988653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.28  E-value=0.0025  Score=52.53  Aligned_cols=30  Identities=27%  Similarity=0.322  Sum_probs=26.9

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +.+.+|+.++|.|+.|+|||||+..|+...
T Consensus        28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            567899999999999999999999888754

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.26  E-value=0.0024  Score=59.25  Aligned_cols=45  Identities=22%  Similarity=0.336  Sum_probs=40.4

Q ss_pred             ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544        174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAK  218 (266)
Q Consensus       174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~  218 (266)
                      .-+.||+..+|-++. +-+|+=+.|.|.+|+|||+|+.+++.+.+.
T Consensus        27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~   72 (338)
T 4a1f_A           27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN   72 (338)
T ss_dssp             CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            467899999998874 889999999999999999999999998765

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.24  E-value=0.0024  Score=53.89  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=24.9

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ..+|+.++|.|++|+|||||+..|+...
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999999887754

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.23  E-value=0.0036  Score=59.87  Aligned_cols=63  Identities=13%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             cccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHH
Q psy17544        173 QEILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG  236 (266)
Q Consensus       173 ~e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv  236 (266)
                      ...+.||+..+|-++. +-+|+-+.|.|.+|+|||+|+.+++.+.+.. +.-++|.-.-+..+++
T Consensus       177 ~~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql  240 (444)
T 3bgw_A          177 ITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKEN  240 (444)
T ss_dssp             CCSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHH
T ss_pred             CCCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHH
Confidence            3567899999998875 7799999999999999999999999987654 3334444333333333

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.23  E-value=0.0028  Score=53.04  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=23.2

Q ss_pred             ccceEeecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        178 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       178 TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++--..+.+++..+|+.++|.|++|+|||||+..++..
T Consensus        15 ~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           15 TENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             chhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            33345566677788999999999999999999988764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.22  E-value=0.0021  Score=58.90  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.-+.+-+|+.++|+|++|+|||||+..|+.-.
T Consensus       118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            455789999999999999999999999887643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.21  E-value=0.0021  Score=56.20  Aligned_cols=31  Identities=23%  Similarity=0.490  Sum_probs=26.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        23 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           23 GITFSIPEGALVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3446789999999999999999999987765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.15  E-value=0.002  Score=55.82  Aligned_cols=31  Identities=26%  Similarity=0.399  Sum_probs=26.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           22 GISLSVKKGEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             EEEEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4447889999999999999999999986654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.13  E-value=0.0022  Score=56.45  Aligned_cols=31  Identities=26%  Similarity=0.465  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        27 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           27 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3447789999999999999999999987755

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.11  E-value=0.0025  Score=56.64  Aligned_cols=31  Identities=19%  Similarity=0.328  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        24 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           24 GVSLQARAGDVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3457789999999999999999999987654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.11  E-value=0.003  Score=56.27  Aligned_cols=31  Identities=26%  Similarity=0.335  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        38 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           38 GLSLDVHPGEVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3447899999999999999999999987764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.10  E-value=0.0023  Score=57.07  Aligned_cols=34  Identities=24%  Similarity=0.457  Sum_probs=28.4

Q ss_pred             eEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .++| .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            4453 447899999999999999999999987754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.10  E-value=0.0028  Score=55.72  Aligned_cols=31  Identities=29%  Similarity=0.303  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           21 GVNLVVPKGEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3447899999999999999999999987764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.09  E-value=0.0026  Score=56.14  Aligned_cols=31  Identities=26%  Similarity=0.357  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           25 GVSISVNKGDVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             EECCEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3457899999999999999999999987754

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.09  E-value=0.0031  Score=60.54  Aligned_cols=61  Identities=16%  Similarity=0.083  Sum_probs=46.1

Q ss_pred             ccccc-cceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCch
Q psy17544        174 EILVT-GIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR  234 (266)
Q Consensus       174 e~l~T-GIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~r  234 (266)
                      ..+.| |+..+|-++- +-+|+=+.|.|++|+|||+|+.+++.+.+..++.-++|.-.-+..+
T Consensus       222 ~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~  284 (503)
T 1q57_A          222 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVE  284 (503)
T ss_dssp             TCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHH
T ss_pred             CCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence            46788 9999998874 6689999999999999999999999987644344444444433333

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.09  E-value=0.0035  Score=54.28  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=23.5

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+.+|..+||.|++|+|||||+..|+.
T Consensus        18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           18 LYFQSMRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             -----CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            346788999999999999999999988766

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.08  E-value=0.0037  Score=51.55  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.6

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +|..++|.|++|+|||||+..|...
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            6889999999999999999988764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.08  E-value=0.0031  Score=53.11  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=21.7

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +|+.++|.|++|+|||||+..|....
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999887643

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.07  E-value=0.0022  Score=54.75  Aligned_cols=28  Identities=25%  Similarity=0.271  Sum_probs=20.7

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHH-H
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELI-N  214 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii-~  214 (266)
                      +.+-+|+.++|.|++|+|||||+..|+ .
T Consensus        22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~   50 (231)
T 3lnc_A           22 MLKSVGVILVLSSPSGCGKTTVANKLLEK   50 (231)
T ss_dssp             CCEECCCEEEEECSCC----CHHHHHHC-
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            457789999999999999999999887 5

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.05  E-value=0.0026  Score=55.63  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=26.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             EEEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             EeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3346788999999999999999999987764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.03  E-value=0.0028  Score=56.50  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             eeEEEEcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence            4457789999999999999999999987654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.03  E-value=0.0026  Score=57.16  Aligned_cols=33  Identities=24%  Similarity=0.499  Sum_probs=27.9

Q ss_pred             Ee-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        182 VV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       182 aI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ++ |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus        23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            44 4447899999999999999999999987654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.03  E-value=0.0028  Score=56.21  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=26.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           33 GISFEIEEGEIFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3447789999999999999999999987754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.01  E-value=0.0027  Score=55.11  Aligned_cols=31  Identities=29%  Similarity=0.542  Sum_probs=26.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             EEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3446788999999999999999999987764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.01  E-value=0.003  Score=56.05  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=26.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        38 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           38 SINFFIPSGTTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3446788999999999999999999987765

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.01  E-value=0.0031  Score=59.02  Aligned_cols=34  Identities=29%  Similarity=0.454  Sum_probs=29.1

Q ss_pred             eEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .++ |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhc
Confidence            455 5567899999999999999999999987764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.01  E-value=0.003  Score=56.45  Aligned_cols=31  Identities=29%  Similarity=0.330  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        37 ~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           37 GLTFTLYPGKVTALVGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3446789999999999999999999987754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.00  E-value=0.0028  Score=55.42  Aligned_cols=31  Identities=23%  Similarity=0.408  Sum_probs=26.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        24 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3446789999999999999999999987654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.99  E-value=0.0078  Score=55.30  Aligned_cols=42  Identities=29%  Similarity=0.356  Sum_probs=31.8

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  227 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a  227 (266)
                      -+.+.+|+.++|.|++|+|||||+..++.......+.+.|.+
T Consensus        49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~   90 (337)
T 2qm8_A           49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA   90 (337)
T ss_dssp             GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence            367899999999999999999999988764322233355544

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.99  E-value=0.0026  Score=55.03  Aligned_cols=31  Identities=26%  Similarity=0.509  Sum_probs=26.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        27 ~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           27 RITMTIEKGNVVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             EEEEEEETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3346788999999999999999999987654

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.97  E-value=0.005  Score=57.20  Aligned_cols=44  Identities=25%  Similarity=0.168  Sum_probs=36.9

Q ss_pred             ccccccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        172 EQEILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       172 ~~e~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +...+.||+..+|-++ -+-+|.-+.|+|++|+|||+|+.+++.+
T Consensus       102 i~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          102 LTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             SSTTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             hhhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4555779999999988 2337778899999999999999999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.97  E-value=0.0029  Score=56.88  Aligned_cols=31  Identities=39%  Similarity=0.417  Sum_probs=27.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           39 KISWQIAKGDKWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             EEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             eeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4457889999999999999999999987654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.96  E-value=0.0032  Score=55.94  Aligned_cols=31  Identities=19%  Similarity=0.313  Sum_probs=26.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            3447899999999999999999999987654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.95  E-value=0.0059  Score=54.20  Aligned_cols=33  Identities=33%  Similarity=0.376  Sum_probs=27.9

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ++-+. +-+|+.++|.|++|+|||||+..++...
T Consensus        17 l~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           17 VLELC-HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             HHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             HHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            44444 7899999999999999999999888754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.93  E-value=0.0031  Score=55.75  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=26.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             EEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4446789999999999999999999987654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.91  E-value=0.0039  Score=58.83  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=29.1

Q ss_pred             ceEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        180 IKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       180 IraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ..++ |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence            3444 4557899999999999999999999987764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.91  E-value=0.0032  Score=51.71  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=22.9

Q ss_pred             cccccCceeeeecCCCccHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIME  211 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~  211 (266)
                      +.+.+|+-++|+|++|+|||||+..
T Consensus         4 l~i~~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            4 LTIPELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHH
Confidence            5678999999999999999999984

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.90  E-value=0.0032  Score=55.70  Aligned_cols=30  Identities=30%  Similarity=0.490  Sum_probs=26.3

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   53 (253)
T 2nq2_C           24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLG   53 (253)
T ss_dssp             EEEEEETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            346789999999999999999999987654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.89  E-value=0.0041  Score=58.12  Aligned_cols=31  Identities=26%  Similarity=0.420  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence            5567899999999999999999999987764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.88  E-value=0.0056  Score=59.26  Aligned_cols=58  Identities=22%  Similarity=0.331  Sum_probs=42.7

Q ss_pred             ccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCc
Q psy17544        174 EILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT  233 (266)
Q Consensus       174 e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~  233 (266)
                      +.+.||+.-+|-++  .+-+|.-++|.|++|+|||||+.+++.... .++..++| ..+|..
T Consensus       261 ~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-~~G~~vi~-~~~ee~  320 (525)
T 1tf7_A          261 VRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC-ANKERAIL-FAYEES  320 (525)
T ss_dssp             CEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-TTTCCEEE-EESSSC
T ss_pred             ceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-hCCCCEEE-EEEeCC
Confidence            45678887777664  788999999999999999999999987653 34443444 344443

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.88  E-value=0.0045  Score=51.70  Aligned_cols=27  Identities=37%  Similarity=0.442  Sum_probs=22.9

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .-+|..++|.|++|+|||||+..|+..
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999988764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.87  E-value=0.0042  Score=58.35  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             eeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence            4557899999999999999999999987764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.86  E-value=0.0043  Score=58.07  Aligned_cols=31  Identities=23%  Similarity=0.463  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             eeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence            4557899999999999999999999987764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.85  E-value=0.0041  Score=58.10  Aligned_cols=31  Identities=26%  Similarity=0.483  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   63 (355)
T 1z47_A           33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAG   63 (355)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4557889999999999999999999987764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.84  E-value=0.0094  Score=54.07  Aligned_cols=31  Identities=26%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      +.+.+|+.++|+|++|+|||||+..|+....
T Consensus        95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A           95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             CCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999998887543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.83  E-value=0.0037  Score=58.13  Aligned_cols=31  Identities=23%  Similarity=0.392  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   48 (348)
T 3d31_A           18 NLSLKVESGEYFVILGPTGAGKTLFLELIAG   48 (348)
T ss_dssp             EEEEEECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred             eeEEEEcCCCEEEEECCCCccHHHHHHHHHc
Confidence            4457899999999999999999999987764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.79  E-value=0.0044  Score=58.12  Aligned_cols=31  Identities=23%  Similarity=0.350  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   51 (372)
T 1g29_1           21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAG   51 (372)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeEEEEcCCCEEEEECCCCcHHHHHHHHHHc
Confidence            5557899999999999999999999987764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.76  E-value=0.0061  Score=50.86  Aligned_cols=29  Identities=28%  Similarity=0.148  Sum_probs=23.3

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+.+|..+.|.|++|+||||++..++..
T Consensus        20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           20 FQSNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             EecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999988864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.71  E-value=0.0038  Score=57.08  Aligned_cols=31  Identities=26%  Similarity=0.468  Sum_probs=27.2

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|+|++|+|||||+..|..
T Consensus        72 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           72 DVSFTVMPGQTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             EEEEEECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred             eeeEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence            3447899999999999999999999987765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.70  E-value=0.005  Score=58.16  Aligned_cols=31  Identities=26%  Similarity=0.628  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        39 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           39 NISFSISPGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             ceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence            3446899999999999999999999987764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.67  E-value=0.0037  Score=58.18  Aligned_cols=31  Identities=23%  Similarity=0.516  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K           23 NVNINIENGERFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             EEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4457889999999999999999999987764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.66  E-value=0.0057  Score=57.43  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=29.3

Q ss_pred             ceEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        180 IKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       180 IraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.++ |.=+.+.+|+.++|+|++|+|||||+..|..
T Consensus        41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence            4455 4558899999999999999999999986654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.64  E-value=0.0063  Score=51.50  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=22.6

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |++++|+|++|+|||||+..|+...
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            7899999999999999999888754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.62  E-value=0.0032  Score=52.02  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=28.2

Q ss_pred             eEeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+++- +++.+|.+++|+|.+|+|||||+..++.
T Consensus        16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            34555 8999999999999999999999987764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.60  E-value=0.005  Score=55.70  Aligned_cols=31  Identities=29%  Similarity=0.542  Sum_probs=26.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~G   86 (290)
T 2bbs_A           56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMG   86 (290)
T ss_dssp             EEEEEECTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            3446788999999999999999999987654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.56  E-value=0.013  Score=57.30  Aligned_cols=33  Identities=30%  Similarity=0.202  Sum_probs=28.4

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      .-+.+.+|+.++|+|++|+|||||+..|+....
T Consensus       286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceeeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence            335788999999999999999999998887543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.56  E-value=0.0056  Score=54.56  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=25.1

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+- |+.++|+|++|+|||||+..|+.
T Consensus        24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~G   52 (263)
T 2pjz_A           24 INLEVN-GEKVIILGPNGSGKTTLLRAISG   52 (263)
T ss_dssp             EEEEEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred             eeEEEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence            346778 99999999999999999987764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.56  E-value=0.013  Score=53.20  Aligned_cols=38  Identities=32%  Similarity=0.382  Sum_probs=28.8

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  228 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al  228 (266)
                      ++|+.++|+|++|+|||||+..|+.... .++.-+.+..
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l~g  137 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCA  137 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEC
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEe
Confidence            4799999999999999999999887553 3334344443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.56  E-value=0.0032  Score=57.61  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=29.1

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +|.|+++-+|+.++|+|++|+|||||+..|..
T Consensus       164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             HHHHHhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence            67889999999999999999999999987754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.53  E-value=0.0055  Score=52.65  Aligned_cols=27  Identities=30%  Similarity=0.237  Sum_probs=24.0

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +-+|+.++|+|++|+|||||+..|+.-
T Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            378999999999999999999877653

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.46  E-value=0.0051  Score=49.86  Aligned_cols=26  Identities=27%  Similarity=0.498  Sum_probs=23.8

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +|+-++|+|++|+|||+|+..+++..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999888754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.46  E-value=0.0091  Score=49.82  Aligned_cols=29  Identities=31%  Similarity=0.288  Sum_probs=25.3

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .-.+.+|..++|.|++|+|||||+..+..
T Consensus        15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           15 VPRGSKTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34577899999999999999999998876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.45  E-value=0.0078  Score=50.21  Aligned_cols=27  Identities=26%  Similarity=0.234  Sum_probs=24.0

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ..++.+.|.|++|+|||+|+..+++..
T Consensus        50 ~~~~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           50 DGVQAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             CSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999888754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.40  E-value=0.009  Score=51.63  Aligned_cols=27  Identities=30%  Similarity=0.409  Sum_probs=22.7

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +-+|+-++|.|++|+|||||+..|...
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            457999999999999999999987653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.39  E-value=0.017  Score=53.95  Aligned_cols=41  Identities=27%  Similarity=0.335  Sum_probs=31.0

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  228 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al  228 (266)
                      +.+.+|+.++|+|++|+|||||+..|+... ..++.-+.+..
T Consensus       152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g  192 (359)
T 2og2_A          152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAA  192 (359)
T ss_dssp             CCSSSSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEC
T ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHhhc-cccCCEEEEec
Confidence            467899999999999999999999888754 33333343333

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.38  E-value=0.012  Score=48.43  Aligned_cols=28  Identities=29%  Similarity=0.343  Sum_probs=24.7

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +..+|..++|.|++|+||||++..++..
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            5568899999999999999999988764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.38  E-value=0.0096  Score=47.86  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=21.8

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .|..++|.|++|+|||||+..++..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999988763

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.37  E-value=0.0088  Score=54.99  Aligned_cols=28  Identities=25%  Similarity=0.455  Sum_probs=24.7

Q ss_pred             cccc--CceeeeecCCCccHHHHHHHHHHH
Q psy17544        188 PYAK--GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       188 pigk--GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++-+  |++++|+|++|+|||||+..|+..
T Consensus       164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          164 EARPFFAKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             TTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             HHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence            4567  999999999999999999988764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.31  E-value=0.011  Score=54.00  Aligned_cols=29  Identities=24%  Similarity=0.169  Sum_probs=25.5

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.+|+.++|.|++|+|||||+..|..-.
T Consensus        86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           86 DRPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            47899999999999999999998877643

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.30  E-value=0.011  Score=47.77  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=22.8

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -+|..++|.|++|+|||||+..++..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            35889999999999999999988763

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.26  E-value=0.011  Score=49.37  Aligned_cols=23  Identities=39%  Similarity=0.612  Sum_probs=20.2

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+++|.|++|+|||||+..|+..
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999888764

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.25  E-value=0.012  Score=50.42  Aligned_cols=29  Identities=21%  Similarity=0.414  Sum_probs=24.3

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +|.-+|.-+.|.|++|+|||||+..|+..
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            45568999999999999999999988764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.24  E-value=0.012  Score=49.69  Aligned_cols=26  Identities=31%  Similarity=0.420  Sum_probs=23.1

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -+|.-++|.|++|+|||||+..++..
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            47889999999999999999988764

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.23  E-value=0.0084  Score=67.06  Aligned_cols=58  Identities=22%  Similarity=0.400  Sum_probs=47.0

Q ss_pred             cccccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544        171 VEQEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV  229 (266)
Q Consensus       171 ~~~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI  229 (266)
                      ...+.+.||+..+|.++.   +-+|.-+.|+|++|+|||+|+.+++.+.+ ..+..++|--.
T Consensus      1403 ~~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~ 1463 (2050)
T 3cmu_A         1403 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDA 1463 (2050)
T ss_dssp             TSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECT
T ss_pred             cccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEc
Confidence            346789999999999999   77999999999999999999999988643 34444555443

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.21  E-value=0.025  Score=47.35  Aligned_cols=29  Identities=28%  Similarity=0.242  Sum_probs=25.1

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +..+|..++|.|++|+|||||+..+....
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35788999999999999999999887643

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.17  E-value=0.011  Score=51.88  Aligned_cols=30  Identities=20%  Similarity=0.326  Sum_probs=25.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+ +.++|+|++|+|||||+..|+.
T Consensus        17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~G   46 (240)
T 2onk_A           17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEEEECS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred             eeEEEECC-EEEEEECCCCCCHHHHHHHHhC
Confidence            44467889 9999999999999999987754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.15  E-value=0.0067  Score=54.78  Aligned_cols=31  Identities=35%  Similarity=0.495  Sum_probs=29.0

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii  213 (266)
                      ||-|+.+-+|+..+|.|++|+|||||+..|.
T Consensus       156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          156 IDELVDYLEGFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence            6888889999999999999999999999887

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.15  E-value=0.019  Score=51.76  Aligned_cols=43  Identities=19%  Similarity=0.142  Sum_probs=30.2

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHHHH--hcCCcEEEEEeec
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVG  230 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~a--~~~~~v~V~alIG  230 (266)
                      +..+|..+||.|++|+|||||+..|.....  -..+.+.++.+=|
T Consensus        76 ~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~  120 (308)
T 1sq5_A           76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG  120 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence            458999999999999999999998776432  1223355544444

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.14  E-value=0.015  Score=56.86  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=27.9

Q ss_pred             EeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++.+..+.+|+.++|+|++|+|||||+..|+-
T Consensus        37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~G   69 (538)
T 1yqt_A           37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAG   69 (538)
T ss_dssp             EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred             cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            455555789999999999999999999987654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.11  E-value=0.061  Score=49.38  Aligned_cols=42  Identities=33%  Similarity=0.266  Sum_probs=30.8

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeec
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG  230 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIG  230 (266)
                      .-.+|+.++|.|++|+|||||+..|+.... .++.-+.+....
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D  166 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASD  166 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeec
Confidence            346899999999999999999999987653 333334444433

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.10  E-value=0.014  Score=49.01  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=21.8

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.+++|.|++|+||||++..++..
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999988764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.10  E-value=0.015  Score=57.82  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=28.8

Q ss_pred             EeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .++.+..+.+|+.++|+|++|+|||||+..|+-
T Consensus        93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~G  125 (608)
T 3j16_B           93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAG  125 (608)
T ss_dssp             EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred             eecCCCCCCCCCEEEEECCCCChHHHHHHHHhc
Confidence            566677889999999999999999999987654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.07  E-value=0.014  Score=48.73  Aligned_cols=27  Identities=33%  Similarity=0.365  Sum_probs=24.3

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -+|+.+.|.|++|+|||||+..++...
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999988754

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.04  E-value=0.013  Score=64.68  Aligned_cols=63  Identities=22%  Similarity=0.383  Sum_probs=48.6

Q ss_pred             cccccccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCC
Q psy17544        169 MSVEQEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER  232 (266)
Q Consensus       169 R~~~~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER  232 (266)
                      +.+..+.+.||+..+|-++.   +-+|+-+.|+|++|+|||+|+.+++.+.+. .+.-++|.-.-+.
T Consensus         8 ~~~~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~-~G~~vlYI~te~~   73 (1706)
T 3cmw_A            8 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHA   73 (1706)
T ss_dssp             ----CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSC
T ss_pred             ccccCcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhh-CCCceEEEEecCc
Confidence            34445778999999999975   889999999999999999999999987543 3445677666554

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.02  E-value=0.016  Score=48.51  Aligned_cols=27  Identities=30%  Similarity=0.466  Sum_probs=24.4

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +++|.-+.|.|++|+|||||+..++..
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999999999988764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.95  E-value=0.014  Score=47.93  Aligned_cols=23  Identities=30%  Similarity=0.281  Sum_probs=20.7

Q ss_pred             CceeeeecCCCccHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |+-++|.|++|+|||||+..|+.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            67789999999999999998865

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.89  E-value=0.012  Score=56.69  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=26.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|++++|+|++|+|||||+..|+.-
T Consensus       130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             cCceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            34455679999999999999999999987764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.88  E-value=0.068  Score=43.31  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ..+.|.|++|+|||+|+..+++..
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            349999999999999999888753

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=94.85  E-value=0.016  Score=49.86  Aligned_cols=27  Identities=41%  Similarity=0.533  Sum_probs=22.4

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+.+|  ++|+|++|+|||+|+..++..
T Consensus        46 ~~~~~g--~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           46 ARIPKG--VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             CCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence            345566  999999999999999988763

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=94.83  E-value=0.017  Score=49.81  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=22.4

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++..++|+|++|+|||||+..|+..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~   50 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQN   50 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999988754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.82  E-value=0.063  Score=44.34  Aligned_cols=28  Identities=25%  Similarity=0.296  Sum_probs=24.0

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .-+|-.+.|.|++|+||||++..++...
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568889999999999999999998754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=94.79  E-value=0.017  Score=51.33  Aligned_cols=26  Identities=35%  Similarity=0.471  Sum_probs=22.1

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+.+|  ++|+|++|+|||+|+..++..
T Consensus        42 ~~~~G--vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           42 VTPAG--VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             CCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred             CCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence            45567  999999999999999988763

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.73  E-value=0.018  Score=46.84  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -+|..+.|.|++|+||||++..++..
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~   27 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQE   27 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            36789999999999999999988764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.69  E-value=0.014  Score=57.18  Aligned_cols=32  Identities=19%  Similarity=0.333  Sum_probs=27.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..+..-
T Consensus       361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34467889999999999999999999987764

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.67  E-value=0.018  Score=63.50  Aligned_cols=58  Identities=22%  Similarity=0.392  Sum_probs=47.2

Q ss_pred             cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecC
Q psy17544        173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE  231 (266)
Q Consensus       173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGE  231 (266)
                      .+.+.||+..+|-++.   +-+|.-+.|.|++|+|||+|+.+++.+.++ .+..++|.-.-+
T Consensus       361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~-~G~~vlyis~E~  421 (1706)
T 3cmw_A          361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEH  421 (1706)
T ss_dssp             CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTS
T ss_pred             CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccC
Confidence            4678999999999997   779999999999999999999999988654 334455544333

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.65  E-value=0.02  Score=56.91  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=28.2

Q ss_pred             EeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++.+..+-+|+.++|+|++|+|||||+..|+-
T Consensus       107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~G  139 (607)
T 3bk7_A          107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG  139 (607)
T ss_dssp             EEECCCCCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred             eeCCCCCCCCCCEEEEECCCCChHHHHHHHHhC
Confidence            566665789999999999999999999986654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.65  E-value=0.035  Score=51.63  Aligned_cols=29  Identities=31%  Similarity=0.411  Sum_probs=26.0

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      +-+|+.++|.|++|+|||||+..|+....
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            67899999999999999999999887553

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.65  E-value=0.0092  Score=53.68  Aligned_cols=32  Identities=31%  Similarity=0.461  Sum_probs=28.8

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ||-++.+-+|+.++|+|++|+|||||+..|+.
T Consensus       160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          160 IEELKEYLKGKISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             HHHHHHHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred             HHHHHHHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence            67788888999999999999999999987764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=94.56  E-value=0.021  Score=49.81  Aligned_cols=25  Identities=32%  Similarity=0.332  Sum_probs=22.6

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      -+|..++|.|++|+|||||+..++.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~   49 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAE   49 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999998873

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}

Probab=94.54  E-value=0.033  Score=49.78  Aligned_cols=65  Identities=6%  Similarity=-0.119  Sum_probs=53.5

Q ss_pred             cccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHH
Q psy17544        175 ILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY  240 (266)
Q Consensus       175 ~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~  240 (266)
                      .+.|||..+|-++-  +-+|--+.|.|++|+|||+|+.+.+.+.+ ..++.++|...-|...++..-.
T Consensus         2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~-~~Ge~~~~~~~~e~~~~l~~~~   68 (260)
T 3bs4_A            2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKL-KSDNLVGMFSISYPLQLIIRIL   68 (260)
T ss_dssp             CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHH-HTTCEEEEEECSSCHHHHHHHH
T ss_pred             cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHH-HCCCcEEEEEEeCCHHHHHHHH
Confidence            35799999999976  55899999999999999999999888654 3467899999998887766544

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.52  E-value=0.02  Score=46.31  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=21.9

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +|.|++|+|.+|+|||+|+..+..+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6789999999999999999988753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.51  E-value=0.1  Score=47.37  Aligned_cols=43  Identities=26%  Similarity=0.220  Sum_probs=31.4

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecC
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE  231 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGE  231 (266)
                      ...+|..++|.|++|+||||++..++...+. ++.-+.+....-
T Consensus       100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~  142 (306)
T 1vma_A          100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADT  142 (306)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECT
T ss_pred             cCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEcccc
Confidence            3578899999999999999999999986543 333344444433

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.45  E-value=0.078  Score=47.76  Aligned_cols=28  Identities=32%  Similarity=0.426  Sum_probs=25.1

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      .+|+.+++.|+.|+||||++..++...+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999987654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.43  E-value=0.079  Score=47.33  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=23.9

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ..+.-+.|.|++|+|||+|+..+++..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            567889999999999999999888754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=94.41  E-value=0.023  Score=49.77  Aligned_cols=27  Identities=41%  Similarity=0.533  Sum_probs=22.4

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+.+|  ++|+|++|+|||+|+..++..
T Consensus        70 ~~~~~g--vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           70 ARIPKG--VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             CCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence            345566  999999999999999988763

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.40  E-value=0.011  Score=54.72  Aligned_cols=30  Identities=27%  Similarity=0.316  Sum_probs=26.5

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =+.+-+|+.++|.|++|+|||||+..|+..
T Consensus       169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          169 RRAVQLERVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             HHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred             HHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence            356789999999999999999999988764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.30  E-value=0.027  Score=53.36  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHHHHhcCC-cEEEEEeecCCchHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVAKAHG-GYSVFAGVGERTREGND  238 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~-~v~V~alIGER~rEv~e  238 (266)
                      -+.|.|++|+|||+++..+++....... .+.+.+-.+.-.+|+.+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~   92 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSK   92 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHh
Confidence            8899999999999999999886543322 25555555544444443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.29  E-value=0.062  Score=49.04  Aligned_cols=45  Identities=22%  Similarity=0.169  Sum_probs=33.1

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCC
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER  232 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER  232 (266)
                      +...+|+.++|.|++|+||||++..++...+. ++.-+.+....-+
T Consensus       100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~  144 (320)
T 1zu4_A          100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTF  144 (320)
T ss_dssp             CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCS
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCc
Confidence            45788999999999999999999999886543 3333444444433

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=94.21  E-value=0.019  Score=56.34  Aligned_cols=32  Identities=19%  Similarity=0.350  Sum_probs=27.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+|++++|.|++|+|||||+..+..-
T Consensus       361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          361 NINLKIPAGKTVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            44467889999999999999999999877663

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.18  E-value=0.055  Score=50.21  Aligned_cols=28  Identities=18%  Similarity=0.358  Sum_probs=24.5

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ..+|+.++|.|++|+|||||+..++...
T Consensus       120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             HCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            5678899999999999999999887654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.18  E-value=0.023  Score=55.59  Aligned_cols=27  Identities=37%  Similarity=0.632  Sum_probs=24.2

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+-+|+.++|+|++|+|||||+..|+.
T Consensus       308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~G  334 (538)
T 1yqt_A          308 EIKKGEVIGIVGPNGIGKTTFVKMLAG  334 (538)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            467999999999999999999987764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.09  E-value=0.034  Score=44.98  Aligned_cols=26  Identities=27%  Similarity=0.314  Sum_probs=22.3

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +|..+.|.|++|+||||++..++...
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999998754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.08  E-value=0.037  Score=45.72  Aligned_cols=28  Identities=25%  Similarity=0.165  Sum_probs=24.3

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .-+|..+.|.|++|+||||++..++...
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3468889999999999999999998754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.06  E-value=0.058  Score=48.12  Aligned_cols=27  Identities=26%  Similarity=0.482  Sum_probs=23.8

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ..++-+.|.|++|+|||+|+..+++..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            567889999999999999999888754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.05  E-value=0.041  Score=43.55  Aligned_cols=27  Identities=30%  Similarity=0.465  Sum_probs=23.3

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ..+.-+.|.|++|+|||+|+..+++..
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            456779999999999999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.05  E-value=0.015  Score=54.32  Aligned_cols=32  Identities=28%  Similarity=0.375  Sum_probs=26.3

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +|.|....+|+.++|+|++|+|||||+..|+.
T Consensus       206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred             HHHHHHhcCCCEEEEECCCCccHHHHHHHHhc
Confidence            34445556899999999999999999987764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.03  E-value=0.034  Score=45.15  Aligned_cols=26  Identities=35%  Similarity=0.482  Sum_probs=23.1

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +|..++|.|++|+||||++..+....
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999887743

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.00  E-value=0.065  Score=48.91  Aligned_cols=31  Identities=16%  Similarity=0.261  Sum_probs=26.9

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      +...+|..++|.|.+|+|||||+..++....
T Consensus        51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             GGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999886543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.99  E-value=0.033  Score=45.75  Aligned_cols=22  Identities=41%  Similarity=0.700  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |++|+|++|+|||||+..++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999988764

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=93.98  E-value=0.028  Score=62.98  Aligned_cols=54  Identities=24%  Similarity=0.420  Sum_probs=45.1

Q ss_pred             cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544        173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  227 (266)
Q Consensus       173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a  227 (266)
                      .+.+.||+..+|-++.   +-+|.=+.|+|++|+|||+|+.+++.+.++. +..++|.
T Consensus       361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyi  417 (2050)
T 3cmu_A          361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFI  417 (2050)
T ss_dssp             CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred             CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence            4678999999999997   8899999999999999999999999986543 3344443

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=93.96  E-value=0.041  Score=44.63  Aligned_cols=26  Identities=42%  Similarity=0.362  Sum_probs=22.9

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -++..+.|.|++|+||||++..++..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            46788999999999999999988764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=93.95  E-value=0.034  Score=44.13  Aligned_cols=22  Identities=23%  Similarity=0.080  Sum_probs=19.6

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+.|.|++|+||||++..++..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=93.89  E-value=0.035  Score=50.32  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.6

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..++|+|++|+|||||+..+++.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            67899999999999999988764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=93.88  E-value=0.11  Score=46.63  Aligned_cols=50  Identities=24%  Similarity=0.199  Sum_probs=31.4

Q ss_pred             cCc--eeeeecCCCccHHHHHHHHHHHHHhcC-CcEEEEEeecCCchHHHHHHHH
Q psy17544        191 KGG--KIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDLYHE  242 (266)
Q Consensus       191 kGQ--r~gIfgg~G~GKT~L~~~ii~~~a~~~-~~v~V~alIGER~rEv~ef~~~  242 (266)
                      .+.  -+.|.|++|+|||+|+..+++.. ..+ +..+++.-+. ......++++.
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~i~~~-~~~~~~~~~~~   93 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTTARFVYINGF-IYRNFTAIIGE   93 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCCCEEEEEETT-TCCSHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcCeeEEEEeCc-cCCCHHHHHHH
Confidence            445  79999999999999999888753 322 2244444433 33333444444

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=93.88  E-value=0.04  Score=45.95  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.|.|++|+||||++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.87  E-value=0.024  Score=55.57  Aligned_cols=28  Identities=32%  Similarity=0.580  Sum_probs=25.1

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.+-+|+.++|.|++|+|||||+..|+.
T Consensus       289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~G  316 (538)
T 3ozx_A          289 GEAKEGEIIGILGPNGIGKTTFARILVG  316 (538)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             ceECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4578999999999999999999987765

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=93.86  E-value=0.091  Score=45.26  Aligned_cols=34  Identities=29%  Similarity=0.345  Sum_probs=26.2

Q ss_pred             eeccc-ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        183 VDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       183 ID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .|..+ ...+|..+.|.|++|+||||++..++...
T Consensus        16 ~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           16 ENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             ----CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34444 36689999999999999999999998765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.85  E-value=0.033  Score=45.72  Aligned_cols=22  Identities=41%  Similarity=0.700  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +++|+|++|+|||||+..++.+
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999988764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=93.84  E-value=0.073  Score=48.93  Aligned_cols=26  Identities=27%  Similarity=0.377  Sum_probs=22.9

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.+++|.|.+|+|||||+..++...
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            37789999999999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=93.81  E-value=0.029  Score=55.78  Aligned_cols=27  Identities=37%  Similarity=0.630  Sum_probs=24.2

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+-+|+.++|+|++|+|||||+..|+.
T Consensus       378 ~v~~Gei~~i~G~NGsGKSTLlk~l~G  404 (607)
T 3bk7_A          378 EIRKGEVIGIVGPNGIGKTTFVKMLAG  404 (607)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhc
Confidence            467999999999999999999987764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=93.78  E-value=0.15  Score=41.08  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=20.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .++|.|++|+||||++..++...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=93.76  E-value=0.098  Score=42.65  Aligned_cols=33  Identities=27%  Similarity=0.258  Sum_probs=25.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.-...-+|..+.|.|.+|+||||++..++...
T Consensus         5 ~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l   37 (186)
T 2yvu_A            5 TTYKCIEKGIVVWLTGLPGSGKTTIATRLADLL   37 (186)
T ss_dssp             ---CCCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            333334578889999999999999999988754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.75  E-value=0.026  Score=55.62  Aligned_cols=30  Identities=30%  Similarity=0.491  Sum_probs=26.5

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|++++|.|++|+|||||+..+..
T Consensus       374 isl~i~~G~~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             EEEECCTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            346789999999999999999999987765

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=93.73  E-value=0.042  Score=45.95  Aligned_cols=22  Identities=23%  Similarity=0.361  Sum_probs=19.6

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.|.|++|+||||++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988763

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=93.68  E-value=0.037  Score=45.74  Aligned_cols=21  Identities=33%  Similarity=0.599  Sum_probs=19.1

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++|.|++|+||||++..++.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999988765

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=93.67  E-value=0.02  Score=56.13  Aligned_cols=31  Identities=29%  Similarity=0.432  Sum_probs=26.9

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|.|++|+|||||+..+..
T Consensus       359 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          359 DINLSIEKGETVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             eeEEEECCCCEEEEECCCCChHHHHHHHHhc
Confidence            3447899999999999999999999987765

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=93.65  E-value=0.025  Score=50.02  Aligned_cols=31  Identities=23%  Similarity=0.207  Sum_probs=26.1

Q ss_pred             ccccccc---CceeeeecCCCccHHHHHHHHHHH
Q psy17544        185 LLAPYAK---GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       185 ~L~pigk---GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .-+.+.+   |..+.|.|++|+||||++..++..
T Consensus        38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3345666   999999999999999999988763

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=93.60  E-value=0.092  Score=43.23  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=21.5

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +-+.|.|++|+|||+|+..+++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            679999999999999999888754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=93.58  E-value=0.042  Score=43.74  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=19.8

Q ss_pred             ceeeeecCCCccHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      -+++|+|++|+|||+|+..+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3789999999999999998875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=93.55  E-value=0.015  Score=53.35  Aligned_cols=29  Identities=31%  Similarity=0.475  Sum_probs=25.7

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+-+|+.++|.|++|+|||||+..|+..
T Consensus       166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             HHHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45779999999999999999999988764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.52  E-value=0.035  Score=53.06  Aligned_cols=29  Identities=31%  Similarity=0.387  Sum_probs=24.7

Q ss_pred             ccccccCce--eeeecCCCccHHHHHHHHHH
Q psy17544        186 LAPYAKGGK--IGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       186 L~pigkGQr--~gIfgg~G~GKT~L~~~ii~  214 (266)
                      =+.+-+|+.  ++|+|++|+|||||+..|+.
T Consensus        34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G   64 (427)
T 2qag_B           34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFN   64 (427)
T ss_dssp             HHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred             ceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence            367889999  99999999999999987754

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=93.50  E-value=0.029  Score=47.96  Aligned_cols=27  Identities=19%  Similarity=0.171  Sum_probs=23.9

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.-+|.-++|.|+.|+|||||+..|..
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~   42 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEK   42 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHh
Confidence            557899999999999999999987765

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.49  E-value=0.052  Score=44.59  Aligned_cols=26  Identities=31%  Similarity=0.290  Sum_probs=23.0

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +|..+.|.|++|+||||++..++...
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l   28 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWI   28 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=93.45  E-value=0.036  Score=58.24  Aligned_cols=31  Identities=23%  Similarity=0.443  Sum_probs=27.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus       453 ~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          453 KTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456899999999999999999999998874

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.43  E-value=0.093  Score=43.75  Aligned_cols=27  Identities=19%  Similarity=0.206  Sum_probs=22.9

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      +|+-..|.|++|+||||++.+++++..
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~   28 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYK   28 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            477788999999999999988887654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.42  E-value=0.071  Score=50.62  Aligned_cols=27  Identities=22%  Similarity=0.331  Sum_probs=24.3

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -+|+-++|.|++|+|||||+..|+...
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            689999999999999999999888754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=93.41  E-value=0.048  Score=49.07  Aligned_cols=28  Identities=21%  Similarity=0.191  Sum_probs=24.4

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -.++..++|.|++|+|||||+..|....
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678899999999999999998887654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=93.40  E-value=0.054  Score=44.46  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=22.4

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +|-.+.|.|++|+||||++..++..
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            6788999999999999999988763

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=93.39  E-value=0.038  Score=44.82  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.3

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |+.|+|++|+|||+|+..++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            789999999999999998875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.37  E-value=0.056  Score=42.17  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999988764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.35  E-value=0.05  Score=43.22  Aligned_cols=27  Identities=30%  Similarity=0.437  Sum_probs=22.9

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ....-+.|.|++|+|||+|+..+++..
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            346678899999999999999998764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.35  E-value=0.028  Score=55.29  Aligned_cols=30  Identities=20%  Similarity=0.361  Sum_probs=26.6

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|++++|.|++|+|||||+..+..
T Consensus       362 isl~i~~Ge~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             EEEEECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            347899999999999999999999987765

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=93.35  E-value=0.055  Score=43.90  Aligned_cols=24  Identities=33%  Similarity=0.257  Sum_probs=21.3

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +..+.|.|++|+||||++..++..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            557899999999999999998874

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.34  E-value=0.053  Score=42.05  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999988754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=93.30  E-value=0.053  Score=44.25  Aligned_cols=23  Identities=35%  Similarity=0.716  Sum_probs=20.4

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.|.|++|+||||++..++...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            58899999999999999988753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.27  E-value=0.055  Score=42.16  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=93.27  E-value=0.049  Score=45.17  Aligned_cols=21  Identities=38%  Similarity=0.640  Sum_probs=18.6

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .++|.|++|+||||++..++.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999988754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.21  E-value=0.057  Score=41.80  Aligned_cols=22  Identities=32%  Similarity=0.733  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=93.17  E-value=0.044  Score=51.37  Aligned_cols=29  Identities=24%  Similarity=0.126  Sum_probs=26.1

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+.+|+.++|.|++|+|||||+..++..
T Consensus       164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          164 YNIPKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            57889999999999999999999988763

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.17  E-value=0.061  Score=43.45  Aligned_cols=25  Identities=24%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++-.+.|.|++|+||||++..++..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3557899999999999999988764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=93.14  E-value=0.059  Score=43.15  Aligned_cols=23  Identities=35%  Similarity=0.330  Sum_probs=20.9

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |-++|.|++|+||||+...++..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999988764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=93.14  E-value=0.054  Score=43.45  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=20.0

Q ss_pred             ceeeeecCCCccHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      -|+.++|.+|+|||+|+..+..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999998875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=93.08  E-value=0.066  Score=43.02  Aligned_cols=24  Identities=29%  Similarity=0.303  Sum_probs=20.9

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.-+.|.|.+|+||||++..++..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999999988764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=93.06  E-value=0.057  Score=42.47  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            7899999999999999988753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.04  E-value=0.058  Score=41.61  Aligned_cols=22  Identities=45%  Similarity=0.813  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999988754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=93.01  E-value=0.066  Score=43.52  Aligned_cols=26  Identities=27%  Similarity=0.417  Sum_probs=22.9

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .++-.+.|.|++|+||||++..++..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            46778999999999999999988764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=93.01  E-value=0.051  Score=42.71  Aligned_cols=19  Identities=32%  Similarity=0.315  Sum_probs=17.4

Q ss_pred             eeeeecCCCccHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMEL  212 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~i  212 (266)
                      -+.|.|++|+||||++..+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999988

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.98  E-value=0.065  Score=41.51  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999988764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=92.97  E-value=0.052  Score=48.24  Aligned_cols=22  Identities=32%  Similarity=0.623  Sum_probs=19.5

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +++|+|++|+|||||+..|+..
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=92.96  E-value=0.037  Score=46.07  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +.++|.|++|+|||||+..|++..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999888765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.93  E-value=0.053  Score=53.09  Aligned_cols=29  Identities=31%  Similarity=0.503  Sum_probs=24.9

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |-..-+|+.++|+|++|+|||||+..|+.
T Consensus        19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~G   47 (538)
T 3ozx_A           19 LPTPKNNTILGVLGKNGVGKTTVLKILAG   47 (538)
T ss_dssp             CCCCCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHhc
Confidence            44566999999999999999999987654

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=92.92  E-value=0.064  Score=45.38  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=21.6

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -++..+.|.|++|+||||++..++..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999988763

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=92.91  E-value=0.038  Score=55.01  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=22.8

Q ss_pred             cccccccCceeeeecCCCccHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLI  209 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~  209 (266)
                      .=+.+-+|+.++|+|++|+|||||+
T Consensus        37 vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           37 IDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             EEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             cEEEECCCCEEEEECCCCCCHHHHh
Confidence            3478899999999999999999997

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.89  E-value=0.068  Score=41.57  Aligned_cols=22  Identities=32%  Similarity=0.732  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.87  E-value=0.068  Score=41.81  Aligned_cols=22  Identities=41%  Similarity=0.635  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=92.83  E-value=0.028  Score=60.52  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=28.0

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+||+++|.|++|+|||||+..|.+-
T Consensus      1097 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1097 GLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             EEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred             ceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence            34478999999999999999999999988774

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.83  E-value=0.07  Score=41.52  Aligned_cols=22  Identities=36%  Similarity=0.758  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999988764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=92.79  E-value=0.053  Score=43.95  Aligned_cols=29  Identities=24%  Similarity=0.520  Sum_probs=23.1

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .-+.+.+| -.+|+|++|+|||||+..|..
T Consensus        20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           20 VVIPFSKG-FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence            34556677 889999999999999976643

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=92.73  E-value=0.071  Score=44.10  Aligned_cols=23  Identities=26%  Similarity=0.422  Sum_probs=20.4

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -.+.|.|++|+|||||+..++..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=92.73  E-value=0.079  Score=42.94  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=22.5

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .++..+.|.|.+|+||||++..++..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35677899999999999999988764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=92.72  E-value=0.093  Score=43.25  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=21.1

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +...+.|.|++|+||||++..++..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4457899999999999999988763

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.71  E-value=0.075  Score=41.36  Aligned_cols=22  Identities=32%  Similarity=0.703  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999988763

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=92.70  E-value=0.076  Score=47.36  Aligned_cols=22  Identities=36%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -+.|.|++|+|||+|+..+++.
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=92.70  E-value=0.068  Score=43.57  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++..+.|.|++|+||||++..++..
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999988774

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=92.67  E-value=0.083  Score=44.38  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=22.2

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +|-++.|.|++|+||||++..++..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999988774

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=92.66  E-value=0.075  Score=41.96  Aligned_cols=22  Identities=41%  Similarity=0.764  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.65  E-value=0.071  Score=41.76  Aligned_cols=20  Identities=40%  Similarity=0.537  Sum_probs=18.5

Q ss_pred             eeeeecCCCccHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii  213 (266)
                      |+.|+|.+|+|||+|+..+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999998885

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.64  E-value=0.07  Score=41.62  Aligned_cols=22  Identities=41%  Similarity=0.816  Sum_probs=19.6

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            7899999999999999988753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=92.58  E-value=0.072  Score=43.20  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=20.5

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .++.|.|++|+||||++..++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988774

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.58  E-value=0.079  Score=41.34  Aligned_cols=22  Identities=32%  Similarity=0.770  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=92.56  E-value=0.072  Score=42.53  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.9

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+.|.|++|+||||++..++.
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            478999999999999998876

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=92.55  E-value=0.081  Score=45.16  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=22.1

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+|.+++|.|++|+||||++..++.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999988775

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.54  E-value=0.079  Score=41.82  Aligned_cols=22  Identities=41%  Similarity=0.718  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999988753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.53  E-value=0.075  Score=41.42  Aligned_cols=23  Identities=30%  Similarity=0.806  Sum_probs=20.3

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -|+.++|.+|+|||+|+..+..+
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            37899999999999999988753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=92.50  E-value=0.079  Score=42.76  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =++.|+|.+|+|||+|+..+..+
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            48999999999999999988753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.50  E-value=0.08  Score=42.15  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999988763

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=92.46  E-value=0.23  Score=44.88  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=21.7

Q ss_pred             cCceeee--ecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGL--FGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gI--fgg~G~GKT~L~~~ii~~~  216 (266)
                      .++-+.|  .|++|+|||+|+..+++..
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4566777  8999999999999888754

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=92.45  E-value=0.3  Score=43.71  Aligned_cols=41  Identities=20%  Similarity=0.158  Sum_probs=30.1

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCC
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER  232 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER  232 (266)
                      +|+.++|.|.+|+||||++..++...+.. +.-+.+....-+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~  137 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQ  137 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcc
Confidence            89999999999999999999998866433 333333333433

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=92.42  E-value=0.095  Score=45.47  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=21.9

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..+.-+.|.|++|+|||+|+..+++.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            34556999999999999999988764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=92.42  E-value=0.092  Score=45.41  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=21.9

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++-++.|+|++|+||||++..++..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4558999999999999999988764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=92.40  E-value=0.09  Score=43.42  Aligned_cols=26  Identities=23%  Similarity=0.374  Sum_probs=22.1

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .++..+.|.|++|+||||++..++..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=92.40  E-value=0.078  Score=41.82  Aligned_cols=23  Identities=39%  Similarity=0.775  Sum_probs=20.4

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =|+.|+|.+|+|||+|+..+..+
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            37899999999999999988764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=92.37  E-value=0.083  Score=43.01  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..++.+
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999888764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=92.35  E-value=0.068  Score=43.03  Aligned_cols=25  Identities=32%  Similarity=0.290  Sum_probs=17.4

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++..+.|.|.+|+||||++..++..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            6678999999999999999988763

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.34  E-value=0.088  Score=41.19  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=21.3

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +--|+.++|.+|+|||+|+..+..+
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4458999999999999999988753

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=92.33  E-value=0.12  Score=48.90  Aligned_cols=26  Identities=35%  Similarity=0.558  Sum_probs=22.2

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      +.-+.|.|++|+|||+|+..+++...
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            56789999999999999998887543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=92.32  E-value=0.051  Score=54.10  Aligned_cols=29  Identities=24%  Similarity=0.421  Sum_probs=25.0

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii  213 (266)
                      .=+.+.+|+.++|.|++|+|||||+..+.
T Consensus       341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          341 VSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            33678999999999999999999996543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.32  E-value=0.072  Score=41.62  Aligned_cols=20  Identities=40%  Similarity=0.551  Sum_probs=18.4

Q ss_pred             eeeeecCCCccHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii  213 (266)
                      |+.++|.+|+|||+|+..+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            78999999999999998875

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=92.31  E-value=0.072  Score=42.32  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999888764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.29  E-value=0.088  Score=41.91  Aligned_cols=22  Identities=45%  Similarity=0.801  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999988764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=92.28  E-value=0.085  Score=42.48  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.4

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.|.|++|+||||++..++...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=92.28  E-value=0.043  Score=57.59  Aligned_cols=31  Identities=29%  Similarity=0.449  Sum_probs=26.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|+-
T Consensus       691 dVSl~I~~GeivaIiGpNGSGKSTLLklLaG  721 (986)
T 2iw3_A          691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTG  721 (986)
T ss_dssp             EEEEEEETTCEEEECSCCCHHHHHHHHHHTT
T ss_pred             ccEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3446788999999999999999999987754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=92.26  E-value=0.089  Score=46.83  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=22.3

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..+.-+.|+|++|+|||+|+..+++.
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHH
Confidence            45677999999999999999988764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=92.24  E-value=0.09  Score=42.00  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=20.5

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =|+.|+|.+|+|||+|+..+..+
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            37999999999999999988764

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=92.22  E-value=0.087  Score=42.53  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.|.|++|+||||++..++..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6889999999999999988874

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=92.20  E-value=0.031  Score=54.42  Aligned_cols=29  Identities=14%  Similarity=0.082  Sum_probs=25.0

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+-+|+.++|.|++|+|||||+..++..
T Consensus       255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          255 LAIEHKFSAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             HHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred             HHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            44568999999999999999999988764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=92.19  E-value=0.094  Score=49.43  Aligned_cols=29  Identities=21%  Similarity=0.323  Sum_probs=25.8

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |-.+.+|.+++|+|.+|+|||||+..|..
T Consensus        14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            34577899999999999999999998876

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.18  E-value=0.094  Score=41.24  Aligned_cols=22  Identities=32%  Similarity=0.597  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=92.16  E-value=0.055  Score=53.25  Aligned_cols=29  Identities=24%  Similarity=0.281  Sum_probs=25.8

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+-+|+.+.|.|.+|+|||||+..|+...
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhh
Confidence            46799999999999999999999888754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=92.14  E-value=0.073  Score=42.06  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            7899999999999999988753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.10  E-value=0.095  Score=42.14  Aligned_cols=22  Identities=45%  Similarity=0.813  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=92.09  E-value=0.089  Score=42.96  Aligned_cols=24  Identities=42%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             cCceeeeecCCCccHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.-|+.++|.+|+|||+|+..+..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            445999999999999999998876

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=92.09  E-value=0.098  Score=44.06  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=22.5

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +|-++.|.|++|+||||++..++...
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999887743

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=92.07  E-value=0.082  Score=42.25  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            6899999999999999988764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=92.07  E-value=0.1  Score=42.64  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -+.|.|++|+|||+|+..+++..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999988754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=92.06  E-value=0.096  Score=42.78  Aligned_cols=23  Identities=30%  Similarity=0.379  Sum_probs=20.2

Q ss_pred             CceeeeecCCCccHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ...++|.|++|+||||++..++.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999988865

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.06  E-value=0.099  Score=41.43  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            7899999999999999988753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=92.06  E-value=0.051  Score=51.62  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.4

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .++|+|++|+|||||+..|..
T Consensus        71 ~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            999999999999999987765

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.04  E-value=0.092  Score=41.31  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7999999999999999988753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.03  E-value=0.096  Score=42.45  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            7889999999999999988865

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.00  E-value=0.1  Score=41.36  Aligned_cols=22  Identities=32%  Similarity=0.771  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=91.99  E-value=0.17  Score=44.97  Aligned_cols=26  Identities=31%  Similarity=0.377  Sum_probs=22.5

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.-+.|.|++|+|||+|+..+++..
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            45679999999999999999888754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.96  E-value=0.1  Score=42.19  Aligned_cols=22  Identities=45%  Similarity=0.702  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999988764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=91.91  E-value=0.088  Score=51.05  Aligned_cols=31  Identities=19%  Similarity=0.308  Sum_probs=25.7

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+.+-+ +.++|+|++|+|||||+..|+.-
T Consensus        22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             EEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence            33356778 99999999999999999877653

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=91.91  E-value=0.1  Score=41.40  Aligned_cols=22  Identities=27%  Similarity=0.202  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.|.|++|+||||++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=91.90  E-value=0.087  Score=42.15  Aligned_cols=22  Identities=32%  Similarity=0.628  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7999999999999999988764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.89  E-value=0.08  Score=42.02  Aligned_cols=23  Identities=30%  Similarity=0.605  Sum_probs=20.5

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -|+.++|.+|+|||+|+..++.+
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            37899999999999999988764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=91.88  E-value=0.11  Score=43.36  Aligned_cols=28  Identities=32%  Similarity=0.390  Sum_probs=24.4

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +.+|..+.|.|.+|+||||++..+....
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999988754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=91.87  E-value=0.075  Score=46.09  Aligned_cols=28  Identities=25%  Similarity=0.134  Sum_probs=24.6

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +..++..+.|.|++|+||||++..++..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            5667889999999999999999988764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=91.85  E-value=0.1  Score=41.26  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             cCceeeeecCCCccHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.-++.++|.+|+|||+|+..+..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999998865

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=91.84  E-value=0.11  Score=41.21  Aligned_cols=23  Identities=35%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =|+.|+|.+|+|||+|+..+..+
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999888753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=91.82  E-value=0.098  Score=42.12  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=91.82  E-value=0.11  Score=41.44  Aligned_cols=22  Identities=32%  Similarity=0.687  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6789999999999999988754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=91.81  E-value=0.093  Score=45.05  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=19.2

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.|.|++|+|||+|+..+++.
T Consensus        48 vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           48 VLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHH
Confidence            899999999999999988764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.81  E-value=0.11  Score=41.09  Aligned_cols=22  Identities=41%  Similarity=0.732  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            7899999999999999988764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=91.80  E-value=0.11  Score=45.45  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=21.6

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+.-+.|.|++|+|||+|+..+++.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHH
Confidence            3567899999999999999988764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=91.77  E-value=0.066  Score=57.45  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|.+
T Consensus      1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A         1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp             SCCEEECSSSEEEEECSSSTTHHHHHHHHTT
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3446789999999999999999999987776

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=91.75  E-value=0.2  Score=46.14  Aligned_cols=48  Identities=15%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHh
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEM  243 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l  243 (266)
                      .+.-+.|+|++|+|||+++..++.... ..+. ++|+    ...+|...+.+.+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~~----D~~~~~~~~~~~~   82 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVIII----DPEREYKEMCRKL   82 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEE----ESSCCSHHHHHHT
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEEE----eCCcCHHHHHHHc
Confidence            566788999999999999999887543 3333 3333    3456777776665

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.75  E-value=0.098  Score=41.22  Aligned_cols=21  Identities=33%  Similarity=0.744  Sum_probs=19.1

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |+.|+|.+|+|||+|+..+..
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            789999999999999988764

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=91.73  E-value=0.21  Score=44.77  Aligned_cols=27  Identities=22%  Similarity=0.226  Sum_probs=22.7

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ..+.-+.|.|++|+|||+|+..+++..
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            345679999999999999999888754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=91.72  E-value=0.1  Score=41.58  Aligned_cols=22  Identities=36%  Similarity=0.679  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.69  E-value=0.11  Score=41.71  Aligned_cols=22  Identities=36%  Similarity=0.777  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.66  E-value=0.11  Score=42.05  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999988754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.64  E-value=0.11  Score=42.13  Aligned_cols=22  Identities=23%  Similarity=0.671  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..++.+
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            7899999999999999988764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=91.64  E-value=0.087  Score=41.92  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999988753

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=91.61  E-value=0.21  Score=43.85  Aligned_cols=24  Identities=25%  Similarity=0.207  Sum_probs=21.2

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +-+.|.|++|+|||+|+.++++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhc
Confidence            478999999999999999998753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=91.61  E-value=0.12  Score=45.25  Aligned_cols=23  Identities=26%  Similarity=0.289  Sum_probs=20.3

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -.+.|.|++|+||||++..++..
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.61  E-value=0.098  Score=52.00  Aligned_cols=30  Identities=30%  Similarity=0.459  Sum_probs=24.3

Q ss_pred             cccccccC-----ceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKG-----GKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkG-----Qr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .-+.+-+|     +.++|+|++|+|||||+..|+.
T Consensus       366 vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~G  400 (608)
T 3j16_B          366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG  400 (608)
T ss_dssp             CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHT
T ss_pred             eEEEEecCccccceEEEEECCCCCcHHHHHHHHhc
Confidence            34555555     8899999999999999987764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=91.57  E-value=0.11  Score=43.58  Aligned_cols=25  Identities=16%  Similarity=0.101  Sum_probs=21.8

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++..+.|.|++|+||||++..++..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999988764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=91.56  E-value=0.13  Score=43.94  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ++-|+|++|+||+|++..|+...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999888754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=91.56  E-value=0.1  Score=42.11  Aligned_cols=24  Identities=42%  Similarity=0.533  Sum_probs=20.9

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      --|+.++|.+|+|||+|+..+..+
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357999999999999999988754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=91.55  E-value=0.23  Score=44.68  Aligned_cols=27  Identities=22%  Similarity=0.555  Sum_probs=23.3

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      .++-+.|.|++|+|||+|+..+++...
T Consensus       151 ~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          151 EQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            368899999999999999998887643

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=91.54  E-value=0.11  Score=41.40  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..+.|.|++|+||||++..++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=91.52  E-value=0.11  Score=43.57  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.|.|++|+||||++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999988774

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=91.51  E-value=0.12  Score=42.05  Aligned_cols=22  Identities=41%  Similarity=0.749  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=91.48  E-value=0.44  Score=42.81  Aligned_cols=47  Identities=23%  Similarity=0.073  Sum_probs=31.8

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN  237 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~  237 (266)
                      .+|..+++.|.+|+||||++..++...+. .+.-+.+....-+.....
T Consensus        96 ~~~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~  142 (297)
T 1j8m_F           96 KIPYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAAL  142 (297)
T ss_dssp             SSSEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHH
Confidence            35899999999999999999999886543 333333444443333333

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=91.48  E-value=0.12  Score=43.75  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=18.1

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +-|.||||+|||||+..+...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999988764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.47  E-value=0.12  Score=41.62  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=91.42  E-value=0.097  Score=46.59  Aligned_cols=21  Identities=29%  Similarity=0.659  Sum_probs=18.5

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.++|++|+|||+|+..+++.
T Consensus        39 lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           39 LGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             EEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567799999999999988875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=91.42  E-value=0.1  Score=47.85  Aligned_cols=22  Identities=32%  Similarity=0.353  Sum_probs=19.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -+||.|++|+|||||+..|..-
T Consensus        94 iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999877653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.41  E-value=0.12  Score=41.59  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999988754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=91.40  E-value=0.15  Score=43.46  Aligned_cols=26  Identities=35%  Similarity=0.464  Sum_probs=22.3

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ++.++.|.|++|+||||++..|+...
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999888753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.40  E-value=0.12  Score=42.61  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.5

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -++.|+|++|+|||+|+..+..+
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999988764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.37  E-value=0.18  Score=47.92  Aligned_cols=46  Identities=26%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe---------ecCCchHHHHHHHHhHh
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG---------VGERTREGNDLYHEMIE  245 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al---------IGER~rEv~ef~~~l~~  245 (266)
                      ++++||+|+|||.|+..+++. +..    .+|..         +||..+-++++.+.-.+
T Consensus       185 vLL~GPPGTGKTllAkAiA~e-~~~----~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~  239 (405)
T 4b4t_J          185 VILYGPPGTGKTLLARAVAHH-TDC----KFIRVSGAELVQKYIGEGSRMVRELFVMARE  239 (405)
T ss_dssp             EEEESCSSSSHHHHHHHHHHH-HTC----EEEEEEGGGGSCSSTTHHHHHHHHHHHHHHH
T ss_pred             eEEeCCCCCCHHHHHHHHHHh-hCC----CceEEEhHHhhccccchHHHHHHHHHHHHHH
Confidence            789999999999999988874 333    22222         46666666766655443

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.37  E-value=0.13  Score=45.06  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=21.2

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -|+||+|++|+||||++..|+...
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHh
Confidence            389999999999999999887754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=91.36  E-value=0.13  Score=42.11  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=19.4

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |+.|+|.+|+|||+|+..++.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            799999999999999998874

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=91.34  E-value=0.11  Score=44.11  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=20.4

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..-+.|.|++|+|||+|+..+++.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345889999999999999988774

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.30  E-value=0.2  Score=47.85  Aligned_cols=47  Identities=30%  Similarity=0.459  Sum_probs=30.7

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE-------eecCCchHHHHHHHHhH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-------GVGERTREGNDLYHEMI  244 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a-------lIGER~rEv~ef~~~l~  244 (266)
                      ++++||+|||||.|+..+++. ...+  .+.+-       .+||..+.++++.+.-.
T Consensus       209 iLL~GPPGtGKT~lakAiA~~-~~~~--~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~  262 (428)
T 4b4t_K          209 VLLYGPPGTGKTMLVKAVANS-TKAA--FIRVNGSEFVHKYLGEGPRMVRDVFRLAR  262 (428)
T ss_dssp             EEEESCTTTTHHHHHHHHHHH-HTCE--EEEEEGGGTCCSSCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH-hCCC--eEEEecchhhccccchhHHHHHHHHHHHH
Confidence            889999999999999988875 3332  22221       13555556666655444

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=91.26  E-value=0.27  Score=41.03  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=20.5

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .++|.|.+|+|||||+..++...
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            57899999999999999998864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=91.24  E-value=0.16  Score=40.81  Aligned_cols=24  Identities=21%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ...+.|.|++|+||||++..++..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.24  E-value=0.13  Score=41.55  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7889999999999999988764

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=91.23  E-value=0.25  Score=47.05  Aligned_cols=49  Identities=22%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI  244 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~  244 (266)
                      .-+.|.|++|+|||+|+..+++. ...  ...-+-..+....++.+.++...
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~-~~~--~f~~l~a~~~~~~~ir~~~~~a~   99 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARY-ANA--DVERISAVTSGVKEIREAIERAR   99 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH-TTC--EEEEEETTTCCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH-hCC--CeEEEEeccCCHHHHHHHHHHHH
Confidence            45899999999999999988764 322  24444455555566666665544

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=91.23  E-value=0.27  Score=42.71  Aligned_cols=28  Identities=18%  Similarity=0.110  Sum_probs=23.1

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      .+|+-+.|.|++|+||||++.+++++..
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~   37 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLE   37 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4677778888889999999999998754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.21  E-value=0.13  Score=41.76  Aligned_cols=36  Identities=28%  Similarity=0.503  Sum_probs=21.4

Q ss_pred             cceEeecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        179 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       179 GIraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |-..++.+.+ -+-=|+.|+|.+|+|||+|+..+..+
T Consensus        16 ~~~~~~~~~~-~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           16 ENLYFQSMAK-SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             ------------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cccchhccCC-CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            3333444432 23458999999999999999988764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.21  E-value=0.2  Score=47.95  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.5

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -++++||+|||||.|+..+++.
T Consensus       217 GvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          217 GALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eeEEECcCCCCHHHHHHHHHHH
Confidence            3789999999999999988874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=91.21  E-value=0.13  Score=44.46  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -.++|.|++|+||||++..++..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988773

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=91.20  E-value=0.14  Score=41.55  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7999999999999999988764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.19  E-value=0.14  Score=41.52  Aligned_cols=22  Identities=32%  Similarity=0.699  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999988753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=91.19  E-value=0.084  Score=56.66  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|.+
T Consensus       408 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g  438 (1284)
T 3g5u_A          408 GLNLKVKSGQTVALVGNSGCGKSTTVQLMQR  438 (1284)
T ss_dssp             EEEEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3447899999999999999999999987765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=91.19  E-value=0.13  Score=42.27  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -|+.|+|.+|+|||+|+..+..+
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999988764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=91.18  E-value=0.15  Score=44.58  Aligned_cols=26  Identities=19%  Similarity=0.381  Sum_probs=21.9

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.-+.|.|++|+|||+|+..+++..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34569999999999999999887754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.17  E-value=0.12  Score=41.89  Aligned_cols=22  Identities=32%  Similarity=0.777  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999988764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=91.14  E-value=0.14  Score=41.02  Aligned_cols=22  Identities=36%  Similarity=0.751  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999988764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=91.12  E-value=0.11  Score=44.74  Aligned_cols=21  Identities=33%  Similarity=0.523  Sum_probs=19.2

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.|.|++|+|||+|+..+++.
T Consensus        47 vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            889999999999999988774

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=91.07  E-value=0.14  Score=40.38  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=20.5

Q ss_pred             cCceeeeecCCCccHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+.-+.|.|++|+|||+|+..+.+
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHH
Confidence            455689999999999999987765

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=91.07  E-value=0.13  Score=44.84  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.|.|++|+|||||+..++..
T Consensus         4 i~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            4 HLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHhc
Confidence            679999999999999999875

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=91.07  E-value=0.13  Score=42.70  Aligned_cols=24  Identities=42%  Similarity=0.695  Sum_probs=21.6

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -++.|.|.+|+|||||+..++.+.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=91.06  E-value=0.13  Score=43.80  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=19.2

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |++|+|.+|+|||+|+..+..
T Consensus        31 ~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            789999999999999988775

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=91.00  E-value=0.14  Score=41.74  Aligned_cols=22  Identities=50%  Similarity=0.696  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            7899999999999999988753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.93  E-value=0.14  Score=41.33  Aligned_cols=23  Identities=30%  Similarity=0.751  Sum_probs=20.5

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -|+.|+|.+|+|||+|+..+..+
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            48999999999999999988763

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=90.92  E-value=0.14  Score=41.97  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.0

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -=|+.|+|.+|+|||+|+..+..+
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhC
Confidence            348999999999999999988764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=90.91  E-value=0.12  Score=41.72  Aligned_cols=23  Identities=35%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             CceeeeecCCCccHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=|+.|+|.+|+|||+|+..+..
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            34899999999999999988764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=90.90  E-value=0.54  Score=44.86  Aligned_cols=40  Identities=25%  Similarity=0.084  Sum_probs=29.2

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeec
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG  230 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIG  230 (266)
                      .++..+.+.|++|+||||++..++...+. ++.-+.++.+.
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D  134 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVAAD  134 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEecC
Confidence            46888999999999999999999986643 33333333333

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=90.86  E-value=0.11  Score=46.72  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=18.2

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++|+|++|+|||||+..|..
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            459999999999999988653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=90.85  E-value=0.14  Score=41.64  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999888753

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=90.83  E-value=0.16  Score=42.83  Aligned_cols=23  Identities=35%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -.++|.|++|+||||+...++..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999988764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=90.81  E-value=0.29  Score=40.70  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.0

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ..++|.|++|+|||||+..++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            467899999999999999998764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=90.81  E-value=0.55  Score=42.92  Aligned_cols=28  Identities=7%  Similarity=0.126  Sum_probs=24.9

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -+++..+.|.|++|+|||+++..+++..
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4688899999999999999999988765

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=90.80  E-value=0.56  Score=40.04  Aligned_cols=55  Identities=18%  Similarity=0.126  Sum_probs=34.5

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG  247 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g  247 (266)
                      +|--+-|-|+.|+||||++..+...... . ++.|+..-=.++.+..+.++++...+
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~-~~~v~~~~~p~~~~~g~~i~~~l~~~   59 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRE-R-GIEVQLTREPGGTPLAERIRELLLAP   59 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHT-T-TCCEEEEESSCSSHHHHHHHHHHHSC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHH-c-CCCcccccCCCCCHHHHHHHHHHhcC
Confidence            6778899999999999999998876532 2 23333222222344555555554433

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=90.76  E-value=0.14  Score=41.29  Aligned_cols=21  Identities=24%  Similarity=0.351  Sum_probs=18.9

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |+.|+|.+|+|||+|+..+..
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            688999999999999988764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=90.75  E-value=0.12  Score=41.43  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999988753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=90.74  E-value=0.43  Score=41.40  Aligned_cols=58  Identities=19%  Similarity=0.202  Sum_probs=33.1

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHHhcC--CcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAH--GGYSVFAGVGERTREGNDLYHEMIESG  247 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~--~~v~V~alIGER~rEv~ef~~~l~~~g  247 (266)
                      .+|--+-|-|++|+||||++..+.......+  .++.|+..--.++.+..+.++++...+
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~   82 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ   82 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHS
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcC
Confidence            4788899999999999999998887653320  013333332233445555555554443

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=90.68  E-value=0.16  Score=41.58  Aligned_cols=22  Identities=14%  Similarity=0.217  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .++|.|++|+||||++..++..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999988764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=90.68  E-value=0.17  Score=42.24  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             CceeeeecCCCccHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +-.++|.|++|+||||++..++.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999988754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.64  E-value=0.15  Score=42.43  Aligned_cols=22  Identities=50%  Similarity=0.741  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            7899999999999999988764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=90.60  E-value=0.35  Score=44.15  Aligned_cols=28  Identities=29%  Similarity=0.461  Sum_probs=24.0

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      .+.-+++|.|.+|+|||||+..++...+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4556899999999999999999987654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.58  E-value=0.15  Score=41.66  Aligned_cols=22  Identities=36%  Similarity=0.767  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999988753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=90.57  E-value=0.084  Score=43.62  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=20.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.|.|++|+||||++..++...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l   24 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAF   24 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998765

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.56  E-value=0.1  Score=41.54  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      -+.=|+.++|.+|+|||+|+..+..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3556899999999999999988763

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=90.56  E-value=0.17  Score=40.39  Aligned_cols=20  Identities=30%  Similarity=0.295  Sum_probs=17.2

Q ss_pred             eeeeecCCCccHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii  213 (266)
                      |+.|+|.+|+|||+|+..+.
T Consensus        16 ki~vvG~~~~GKssL~~~l~   35 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIY   35 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999995443

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=90.54  E-value=0.15  Score=49.55  Aligned_cols=25  Identities=40%  Similarity=0.546  Sum_probs=23.1

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +|.-++|+|++|+|||+|+..++..
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999988774

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=90.53  E-value=0.13  Score=41.88  Aligned_cols=23  Identities=39%  Similarity=0.502  Sum_probs=19.8

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =|+.|+|.+|+|||+|+..+..+
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999988754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.53  E-value=0.09  Score=41.92  Aligned_cols=22  Identities=36%  Similarity=0.706  Sum_probs=9.5

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999888754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=90.53  E-value=0.12  Score=42.53  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=20.2

Q ss_pred             CceeeeecCCCccHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      --|+.++|.+|+|||+|+..+..
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            34899999999999999998864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=90.52  E-value=0.13  Score=42.53  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=21.1

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +-=|+.++|.+|+|||+|+..+..+
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhC
Confidence            4458999999999999999888764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.50  E-value=0.16  Score=41.07  Aligned_cols=22  Identities=41%  Similarity=0.616  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999988864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=90.50  E-value=0.16  Score=45.58  Aligned_cols=25  Identities=28%  Similarity=0.521  Sum_probs=22.2

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.-+.|.|++|+|||+|+..+++..
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l   94 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQAL   94 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999888753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=90.50  E-value=0.15  Score=40.76  Aligned_cols=25  Identities=16%  Similarity=0.309  Sum_probs=21.0

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      -+.=|+.++|.+|+|||+|+..+..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            3456899999999999999998874

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.49  E-value=0.15  Score=41.04  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.9

Q ss_pred             cCceeeeecCCCccHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +-=|+.++|.+|+|||+|+..+..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            345899999999999999998874

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.45  E-value=0.17  Score=41.26  Aligned_cols=23  Identities=39%  Similarity=0.730  Sum_probs=20.2

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =|+.|+|.+|+|||+|+..+..+
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            37899999999999999988753

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=90.44  E-value=0.13  Score=46.07  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=21.9

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.+++|+|.+|+|||||+..+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            5668999999999999999988753

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=90.42  E-value=0.33  Score=47.93  Aligned_cols=50  Identities=18%  Similarity=0.175  Sum_probs=36.0

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG  247 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g  247 (266)
                      ..|.||+|+|||+.+.+++....+...-+   ..|.-...-+.++.+.|.+.+
T Consensus       208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~I---Lv~a~TN~AvD~i~erL~~~~  257 (646)
T 4b3f_X          208 AIIHGPPGTGKTTTVVEIILQAVKQGLKV---LCCAPSNIAVDNLVERLALCK  257 (646)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHTTCCE---EEEESSHHHHHHHHHHHHHTT
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhCCCeE---EEEcCchHHHHHHHHHHHhcC
Confidence            57999999999999999988655433122   345566777788888776554

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=90.36  E-value=0.14  Score=44.47  Aligned_cols=25  Identities=32%  Similarity=0.506  Sum_probs=22.2

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .|..+.|.|++|+|||+|+.+++..
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            5677999999999999999999864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=90.32  E-value=0.17  Score=41.77  Aligned_cols=21  Identities=33%  Similarity=0.621  Sum_probs=19.2

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |+.|+|.+|+|||+|+..+..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            789999999999999988875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=90.31  E-value=0.1  Score=56.25  Aligned_cols=31  Identities=26%  Similarity=0.470  Sum_probs=27.1

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .=+.+-+|++++|.|++|+|||||+.-|.+-
T Consensus       437 isl~i~~G~~vaivG~sGsGKSTll~ll~~~  467 (1321)
T 4f4c_A          437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRY  467 (1321)
T ss_dssp             EEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred             eEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence            3467889999999999999999999877664

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.31  E-value=0.16  Score=41.76  Aligned_cols=22  Identities=41%  Similarity=0.724  Sum_probs=19.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            7899999999999999988753

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=90.29  E-value=0.19  Score=44.84  Aligned_cols=28  Identities=25%  Similarity=0.242  Sum_probs=23.4

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +-.+|.-+.|.|++|+|||||+..++..
T Consensus        29 ~~~~~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4456677899999999999999988763

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=90.27  E-value=0.17  Score=42.17  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=90.26  E-value=0.13  Score=42.26  Aligned_cols=20  Identities=40%  Similarity=0.537  Sum_probs=18.4

Q ss_pred             eeeeecCCCccHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii  213 (266)
                      |+.|+|.+|+|||+|+..+.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999998874

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=90.26  E-value=0.15  Score=43.63  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|++|||||+|+..++.+
T Consensus        15 KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCcCHHHHHHHHHhC
Confidence            7999999999999999988764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.26  E-value=0.17  Score=41.72  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            8999999999999999888753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=90.24  E-value=0.17  Score=43.80  Aligned_cols=25  Identities=24%  Similarity=0.181  Sum_probs=21.3

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ....+.|.|++|+|||+|+..+++.
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3456889999999999999988874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=90.22  E-value=0.15  Score=45.94  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=20.7

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..-+.|+|++|+|||+|+..+++.
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            356899999999999999988874

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=90.19  E-value=0.18  Score=43.82  Aligned_cols=26  Identities=31%  Similarity=0.378  Sum_probs=21.9

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.-+.|.|++|+|||+|+..+++..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            35578999999999999999888753

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=90.13  E-value=0.25  Score=43.19  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=21.0

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .-+.|.|++|+|||+|+..+++..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            468999999999999999888754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=90.12  E-value=0.16  Score=45.51  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.1

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .-+.|+|++|+|||+|+..+++.
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999988764

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=90.09  E-value=0.29  Score=48.13  Aligned_cols=40  Identities=20%  Similarity=0.205  Sum_probs=28.1

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeec
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG  230 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIG  230 (266)
                      ..+-+.|.|++|+|||+++..++.........+.+.+-.|
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~  242 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTG  242 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcH
Confidence            4678899999999999999998875433222244444444

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.99  E-value=0.3  Score=46.73  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=19.6

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -++++||+|||||.|+..+++.
T Consensus       217 GvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          217 GVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3789999999999999988875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=89.99  E-value=0.2  Score=42.40  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=19.6

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.|.|++|+||||++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999988764

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=89.97  E-value=0.43  Score=41.90  Aligned_cols=49  Identities=22%  Similarity=0.265  Sum_probs=31.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchH-HHHHHHHh
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE-GNDLYHEM  243 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rE-v~ef~~~l  243 (266)
                      ++-+.+.+|+||||++..++...+. .+--++++-+..-++. ...+++.+
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~q~~~~~~al~~gl   57 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVETHGRAETEALLNGL   57 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCTTCHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCCCCChhHHHHhcCc
Confidence            4667889999999999999886543 3333555666654443 33444444

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=89.97  E-value=0.18  Score=41.04  Aligned_cols=22  Identities=32%  Similarity=0.641  Sum_probs=19.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999988754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=89.85  E-value=0.19  Score=41.16  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999888763

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=89.82  E-value=0.2  Score=41.71  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7889999999999999988764

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.80  E-value=0.32  Score=46.65  Aligned_cols=48  Identities=25%  Similarity=0.420  Sum_probs=31.2

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE-------eecCCchHHHHHHHHhHh
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-------GVGERTREGNDLYHEMIE  245 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a-------lIGER~rEv~ef~~~l~~  245 (266)
                      ++++||+|||||.|+..+++. +..+  .+.+-       .+||..+-++++.+.-.+
T Consensus       219 vLLyGPPGTGKTlLAkAiA~e-~~~~--fi~v~~s~l~sk~vGesek~ir~lF~~Ar~  273 (437)
T 4b4t_I          219 VILYGAPGTGKTLLAKAVANQ-TSAT--FLRIVGSELIQKYLGDGPRLCRQIFKVAGE  273 (437)
T ss_dssp             EEEESSTTTTHHHHHHHHHHH-HTCE--EEEEESGGGCCSSSSHHHHHHHHHHHHHHH
T ss_pred             CceECCCCchHHHHHHHHHHH-hCCC--EEEEEHHHhhhccCchHHHHHHHHHHHHHh
Confidence            889999999999999988875 3332  22221       245555566666554443

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=89.71  E-value=0.2  Score=41.15  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =|+.|+|.+|+|||+|+..+..+
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999988764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=89.70  E-value=0.17  Score=44.10  Aligned_cols=21  Identities=33%  Similarity=0.582  Sum_probs=19.3

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++|+|.+|+|||||+..+..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g   25 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTG   25 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            789999999999999998865

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=89.68  E-value=0.19  Score=48.81  Aligned_cols=26  Identities=38%  Similarity=0.523  Sum_probs=21.6

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+-+|  ++|+|++|+|||+|+..++..
T Consensus        62 ~ip~G--vLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           62 RIPKG--VLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             CCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCce--EEEECCCCCCHHHHHHHHHHH
Confidence            34566  999999999999999887763

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.67  E-value=0.17  Score=45.10  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=22.5

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -+++..+.|.|++|+|||||+..+++.
T Consensus        33 ~~~~~~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           33 PRDLPHLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             TTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            355555999999999999999988774

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=89.60  E-value=0.15  Score=41.17  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -|+.++|.+|+|||+|+..+..+
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            37999999999999999988764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=89.57  E-value=0.2  Score=41.15  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            7899999999999999988753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=89.51  E-value=0.18  Score=41.10  Aligned_cols=24  Identities=29%  Similarity=0.337  Sum_probs=20.5

Q ss_pred             cCceeeeecCCCccHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.=|+.|+|.+|+|||+|+..+..
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHh
Confidence            345899999999999999998753

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=89.42  E-value=0.32  Score=45.22  Aligned_cols=27  Identities=30%  Similarity=0.353  Sum_probs=22.6

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNVAK  218 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~a~  218 (266)
                      -+-+.|+|++|+|||+++..++.+..+
T Consensus        53 ~~h~~i~G~tGsGKs~~~~~li~~~~~   79 (437)
T 1e9r_A           53 PRHLLVNGATGTGKSVLLRELAYTGLL   79 (437)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHHHH
Confidence            467889999999999999888876543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=89.38  E-value=0.2  Score=41.63  Aligned_cols=23  Identities=39%  Similarity=0.608  Sum_probs=19.9

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =|+.|+|.+|+|||+|+..+..+
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            37999999999999999988754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=89.36  E-value=0.23  Score=41.13  Aligned_cols=24  Identities=33%  Similarity=0.606  Sum_probs=21.2

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -++.|.|.+|+|||||+..++.+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998763

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=89.34  E-value=0.25  Score=43.35  Aligned_cols=24  Identities=29%  Similarity=0.308  Sum_probs=21.2

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+-+.|.|++|+|||+|+.++++.
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHH
Confidence            478899999999999999988763

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=89.32  E-value=0.42  Score=47.16  Aligned_cols=53  Identities=21%  Similarity=0.270  Sum_probs=36.3

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHhHhcC
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEMIESG  247 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l~~~g  247 (266)
                      ..-..|.||+|+|||+++..++....+..+. +.|   +.-...-+.++.+.+.+.|
T Consensus       195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv---~a~tn~A~~~l~~~l~~~~  248 (624)
T 2gk6_A          195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLV---CAPSNIAVDQLTEKIHQTG  248 (624)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEE---EESSHHHHHHHHHHHHTTT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE---EeCcHHHHHHHHHHHHhcC
Confidence            3457899999999999999998865432222 333   4445566777777776655

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=89.29  E-value=0.22  Score=42.23  Aligned_cols=20  Identities=35%  Similarity=0.566  Sum_probs=18.8

Q ss_pred             eeeeecCCCccHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii  213 (266)
                      |+.|+|.+|+|||+|+..++
T Consensus        39 kVvlvG~~~vGKSSLl~r~~   58 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFA   58 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999998876

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=89.25  E-value=0.15  Score=48.45  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=27.3

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      -|.-+.+-.|..++|+|.+|+|||||+..+..
T Consensus       148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg  179 (416)
T 1udx_A          148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTR  179 (416)
T ss_dssp             EEEEEEECCSCSEEEECCGGGCHHHHHHHHCS
T ss_pred             eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence            35556778899999999999999999988765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=89.21  E-value=0.19  Score=42.23  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =|+.|+|.+|+|||+|+..+..+
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999988754

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=89.13  E-value=0.19  Score=44.80  Aligned_cols=25  Identities=36%  Similarity=0.492  Sum_probs=21.7

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .|.-+.|.|++|+|||+|+..+++.
T Consensus        45 ~~~~vll~G~pGtGKT~la~~la~~   69 (331)
T 2r44_A           45 TGGHILLEGVPGLAKTLSVNTLAKT   69 (331)
T ss_dssp             HTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3678999999999999999988763

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.13  E-value=0.35  Score=46.80  Aligned_cols=48  Identities=29%  Similarity=0.380  Sum_probs=30.5

Q ss_pred             eeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE-------eecCCchHHHHHHHHhH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-------GVGERTREGNDLYHEMI  244 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a-------lIGER~rEv~ef~~~l~  244 (266)
                      -++++|++|+|||.|+..+++. +..+  ...+-       .+||-.+-++++.+.-.
T Consensus       245 GILLyGPPGTGKTlLAkAiA~e-~~~~--fi~vs~s~L~sk~vGesek~ir~lF~~Ar  299 (467)
T 4b4t_H          245 GILLYGPPGTGKTLCARAVANR-TDAT--FIRVIGSELVQKYVGEGARMVRELFEMAR  299 (467)
T ss_dssp             EEEECSCTTSSHHHHHHHHHHH-HTCE--EEEEEGGGGCCCSSSHHHHHHHHHHHHHH
T ss_pred             ceEeeCCCCCcHHHHHHHHHhc-cCCC--eEEEEhHHhhcccCCHHHHHHHHHHHHHH
Confidence            4889999999999999988874 3331  21111       24555555666555443

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=89.10  E-value=0.42  Score=46.10  Aligned_cols=52  Identities=19%  Similarity=0.252  Sum_probs=33.6

Q ss_pred             CceeeeecCCCccHHHHHHHHHH---HHHhcCCcEEEEEeecCCc-hHHHHHHHHh
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELIN---NVAKAHGGYSVFAGVGERT-REGNDLYHEM  243 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~---~~a~~~~~v~V~alIGER~-rEv~ef~~~l  243 (266)
                      ..-++|.|..|+|||||+..+.+   .....+-+..+++-+.+.. -...++..++
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i  207 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI  207 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence            35689999999999999998875   1122232467777666643 2344444443

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=89.07  E-value=0.25  Score=41.20  Aligned_cols=22  Identities=45%  Similarity=0.721  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999988753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=89.07  E-value=0.089  Score=48.46  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=26.4

Q ss_pred             cceEe-ecccccccCceeeeecCCCccHHHHHHHH
Q psy17544        179 GIKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMEL  212 (266)
Q Consensus       179 GIraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~i  212 (266)
                      +++.+ |.=+.+.+| ..+|.|+.|+|||||+..|
T Consensus        47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI   80 (415)
T 4aby_A           47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDAL   80 (415)
T ss_dssp             EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHH
T ss_pred             cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHH
Confidence            34444 344678899 9999999999999999765

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=88.98  E-value=0.22  Score=42.80  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             ceeeeecCCCccHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      -+++|+|.+|+|||||+..+..
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            4799999999999999998875

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=88.96  E-value=0.26  Score=42.53  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=20.8

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +.--+-|+|++|+||+|++..|+...
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            33346789999999999999888754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=88.94  E-value=0.1  Score=42.31  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=5.0

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =|+.|+|.+|+|||+|+..+..+
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            38999999999999999888765

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=88.86  E-value=0.78  Score=40.49  Aligned_cols=50  Identities=20%  Similarity=0.211  Sum_probs=28.4

Q ss_pred             eeeeecC-CCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhc
Q psy17544        194 KIGLFGG-AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES  246 (266)
Q Consensus       194 r~gIfgg-~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~  246 (266)
                      ...+++| +|+|||+++..+++.. ..+  +.-+-....+..++.+.+.++.+.
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~l-~~~--~~~i~~~~~~~~~i~~~~~~~~~~   99 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHDV-NAD--MMFVNGSDCKIDFVRGPLTNFASA   99 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHHT-TEE--EEEEETTTCCHHHHHTHHHHHHHB
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHh-CCC--EEEEcccccCHHHHHHHHHHHHhh
Confidence            5556766 9999999999887642 221  222222223344445555554443

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=88.85  E-value=0.49  Score=45.01  Aligned_cols=28  Identities=25%  Similarity=0.114  Sum_probs=25.0

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAK  218 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~  218 (266)
                      +|+.+.+.|.+|+||||++..++...+.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~  124 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG  124 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            8899999999999999999999986543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=88.84  E-value=0.27  Score=42.77  Aligned_cols=25  Identities=32%  Similarity=0.220  Sum_probs=21.7

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++..+.|.|.+|+||||++..++..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567889999999999999998874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=88.75  E-value=0.82  Score=39.83  Aligned_cols=52  Identities=12%  Similarity=0.113  Sum_probs=33.9

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHhcCCcEE-EEEeecCCchHHHHHHHHhH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-VFAGVGERTREGNDLYHEMI  244 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~-V~alIGER~rEv~ef~~~l~  244 (266)
                      +|.-+.|-|++|+||||++..+........  +. ++..-=.++.+..+.++++.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~--~~~~~~~rep~~t~~g~~ir~~l   78 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNG--IDHITRTREPGGTLLAEKLRALV   78 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSCSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CCeeeeecCCCCCHHHHHHHHHH
Confidence            677899999999999999999887653332  33 33222223445555555544

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=88.47  E-value=0.26  Score=40.18  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=18.1

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |+.++|.+|+|||+|+..+..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            789999999999999875543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=88.43  E-value=0.15  Score=42.44  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=19.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~   38 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTG   38 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999985554

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=88.39  E-value=0.27  Score=42.86  Aligned_cols=28  Identities=25%  Similarity=0.311  Sum_probs=22.5

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +.|.-.+.|.|++|+|||+++..+++..
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3344458999999999999999888753

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=88.39  E-value=0.55  Score=45.05  Aligned_cols=43  Identities=28%  Similarity=0.445  Sum_probs=28.4

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHH---HhcCCcEEEEEeecCC
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNV---AKAHGGYSVFAGVGER  232 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~---a~~~~~v~V~alIGER  232 (266)
                      +...-++|.|++|+|||+|+.++++..   ...-++.+.++-+++.
T Consensus       145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~  190 (591)
T 1z6t_A          145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ  190 (591)
T ss_dssp             TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence            345678999999999999999887532   1111123555555554

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=88.38  E-value=0.29  Score=46.24  Aligned_cols=29  Identities=31%  Similarity=0.491  Sum_probs=24.6

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      --+..|.+++|+|.+|+|||||+..+...
T Consensus        17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34678899999999999999999988754

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=88.37  E-value=0.26  Score=48.44  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=24.1

Q ss_pred             ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        188 PYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       188 pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+-.|+.++|.|++|+|||||+..|+..
T Consensus        56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~   83 (604)
T 3k1j_A           56 AANQKRHVLLIGEPGTGKSMLGQAMAEL   83 (604)
T ss_dssp             HHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred             cccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence            3557889999999999999999988763

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=88.35  E-value=0.28  Score=41.76  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=21.9

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -|.-+.|.|+||+|||||+..++..
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            4667899999999999999998863

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=88.31  E-value=0.26  Score=45.06  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.1

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .-+.|+|++|+|||+|+..+++.
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            34899999999999999988874

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=88.30  E-value=0.19  Score=40.43  Aligned_cols=24  Identities=21%  Similarity=0.302  Sum_probs=20.6

Q ss_pred             cCceeeeecCCCccHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +-=|+.++|.+|+|||+|+..+..
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            455899999999999999988753

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=88.22  E-value=0.23  Score=43.61  Aligned_cols=24  Identities=33%  Similarity=0.486  Sum_probs=20.9

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..-+.|.|++|+|||+|+..+++.
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~   61 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHE   61 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988774

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=88.12  E-value=0.22  Score=47.20  Aligned_cols=20  Identities=35%  Similarity=0.597  Sum_probs=18.0

Q ss_pred             eeeecCCCccHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ++|+|++|+|||||+..++.
T Consensus        34 I~lvG~sGaGKSTLln~L~g   53 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFL   53 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            49999999999999988864

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=88.09  E-value=0.29  Score=42.13  Aligned_cols=41  Identities=15%  Similarity=0.168  Sum_probs=26.9

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCc
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT  233 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~  233 (266)
                      +.-+.|.|++|+|||+|+..+.+. ....+.-.++.-+.+-.
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~-~~~~~~~~~~v~~~~~~   69 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYL-SSRWQGPFISLNCAALN   69 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHT-STTTTSCEEEEEGGGSC
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHh-cCccCCCeEEEecCCCC
Confidence            456889999999999999887763 22111234555555443

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=88.05  E-value=0.26  Score=43.59  Aligned_cols=21  Identities=38%  Similarity=0.551  Sum_probs=18.9

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .++|.|++|+||||++..++.
T Consensus        77 iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           77 VLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998873

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=88.00  E-value=0.3  Score=50.11  Aligned_cols=31  Identities=13%  Similarity=0.009  Sum_probs=25.8

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.-+. .+|+.++|.|+.|+|||||+.+++..
T Consensus       600 disl~-~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          600 PLNLS-PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             EEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            44445 78999999999999999999987653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=87.95  E-value=0.17  Score=41.82  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      --|+.|+|.+|+|||+|+..+..+
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            348999999999999999988764

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=87.94  E-value=0.32  Score=44.09  Aligned_cols=24  Identities=38%  Similarity=0.440  Sum_probs=20.8

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +..+.|.|++|+|||+++..+++.
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=87.88  E-value=0.31  Score=43.76  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=19.7

Q ss_pred             eeeecCCCccHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +.+.|++|+|||+++..+++..
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7999999999999999888753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=87.88  E-value=0.29  Score=43.32  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=20.7

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ..+.|.|++|+|||+|+..+++..
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            349999999999999999888753

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=87.87  E-value=0.31  Score=44.49  Aligned_cols=24  Identities=33%  Similarity=0.422  Sum_probs=20.8

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..-+.|.|++|+|||+|+..+++.
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988764

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=87.86  E-value=0.72  Score=38.84  Aligned_cols=29  Identities=17%  Similarity=0.114  Sum_probs=24.1

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      ..+|+=..+.|+.|+||||.+..++++..
T Consensus         5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~   33 (191)
T 1xx6_A            5 KDHGWVEVIVGPMYSGKSEELIRRIRRAK   33 (191)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            35677778888889999999999998864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=87.76  E-value=0.33  Score=45.38  Aligned_cols=27  Identities=26%  Similarity=0.374  Sum_probs=23.1

Q ss_pred             cccCce--eeeecCCCccHHHHHHHHHHH
Q psy17544        189 YAKGGK--IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       189 igkGQr--~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +-.|++  +.|+|++|+||||++..++..
T Consensus        19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           19 IEDNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             TTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            456777  999999999999999888764

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=87.73  E-value=0.27  Score=51.27  Aligned_cols=31  Identities=13%  Similarity=-0.010  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.-+.+.+|+-++|.|+.|+|||||+.+++.
T Consensus       665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          665 NTDLSEDSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             EEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             cccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence            6667788999999999999999999988753

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=87.69  E-value=0.29  Score=51.04  Aligned_cols=31  Identities=19%  Similarity=-0.043  Sum_probs=27.5

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii  213 (266)
                      -|.-+.+.+|+-++|.|+.|+|||||+.+++
T Consensus       653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             EEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             ccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3677778899999999999999999999874

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=87.68  E-value=0.2  Score=44.80  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=18.2

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.-.++|-|++|+||||++..+...
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3446899999999999999988764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=87.63  E-value=0.32  Score=46.92  Aligned_cols=25  Identities=40%  Similarity=0.579  Sum_probs=20.8

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+|  +.|.|++|+|||+|+..++..
T Consensus        48 ~p~g--vLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           48 MPKG--ILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             CCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCe--EEEECCCCCCHHHHHHHHHHH
Confidence            3355  899999999999999888764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=87.60  E-value=0.38  Score=40.56  Aligned_cols=43  Identities=21%  Similarity=0.222  Sum_probs=28.1

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCC-chHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER-TREGNDLYHE  242 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER-~rEv~ef~~~  242 (266)
                      +.|.|++|+|||+++.+++..     +.-++|...++. ..|+.+-+..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~d~e~~~rI~~   45 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQILDDEMAARIQH   45 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC------CHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCCCHHHHHHHHH
Confidence            579999999999999988753     224678888765 4444444433

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=87.51  E-value=0.32  Score=43.04  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             ceeeeecCCCccHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      -++.|+|.+|+|||||+..+..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g   25 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITG   25 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHC
Confidence            3789999999999999998875

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=87.35  E-value=0.11  Score=42.57  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.=|+.++|.+|+|||+|+..+..+
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            4458999999999999999877654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=87.45  E-value=0.37  Score=41.02  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=21.8

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ||..+.|-|..|+||||++..++..
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4667899999999999999988774

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=87.22  E-value=1.6  Score=41.80  Aligned_cols=29  Identities=28%  Similarity=0.312  Sum_probs=24.9

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVAK  218 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~  218 (266)
                      .++..+.+.|.+|+||||++..++...++
T Consensus        98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A           98 EKPTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             SSSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            36788999999999999999999986543

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=87.19  E-value=0.38  Score=39.96  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=20.5

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +..++|.|++|+||||++..++..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999999999887663

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=87.06  E-value=0.34  Score=45.56  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.4

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =|++|+|.+|+|||||+..+...
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             ceEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999988753

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=87.03  E-value=0.34  Score=44.08  Aligned_cols=24  Identities=33%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..-+.|.|++|+|||+|+..+++.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999988764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=87.03  E-value=0.13  Score=50.92  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.5

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .++|+|++|+|||||+..|+.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~G   67 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSG   67 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHS
T ss_pred             eEEEECCCCChHHHHHHHHhC
Confidence            389999999999999987764

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=87.00  E-value=1.3  Score=37.91  Aligned_cols=52  Identities=15%  Similarity=0.163  Sum_probs=34.8

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHhcCCcE-EEEEeecC-CchHHHHHHHHhHh
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY-SVFAGVGE-RTREGNDLYHEMIE  245 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v-~V~alIGE-R~rEv~ef~~~l~~  245 (266)
                      +|--+-|-|+.|+||||++..+...... .+ + .|+ ..-| .+.+..+.++++..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~-~~~v~-~~rep~~t~~g~~ir~~l~   55 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQ-LG-IRDMV-FTREPGGTQLAEKLRSLLL   55 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHH-TT-CCCEE-EEESSCSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH-cC-CCcce-eeeCCCCCHHHHHHHHHHh
Confidence            4677889999999999999988876533 22 2 232 2333 45566677766654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=86.83  E-value=0.35  Score=45.69  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .-+.|+|++|+|||+|+..+++.
T Consensus       168 ~~vLL~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999988764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=86.73  E-value=0.38  Score=41.99  Aligned_cols=21  Identities=43%  Similarity=0.558  Sum_probs=19.4

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ++.++|.+|+|||+|+..+..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            789999999999999998875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=86.72  E-value=0.31  Score=40.11  Aligned_cols=21  Identities=48%  Similarity=0.773  Sum_probs=18.9

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |+.|+|.+|+|||+|+..+..
T Consensus        13 ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            789999999999999987763

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=86.70  E-value=0.5  Score=41.16  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=21.7

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +...+.|.|++|+|||+++..+++..
T Consensus        45 ~~~~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           45 SMPHLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            33359999999999999999888753

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=86.51  E-value=0.25  Score=43.79  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=20.5

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..-+.|.|++|+|||+|+..+++.
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~   68 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAAL   68 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHh
Confidence            344999999999999999988774

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=86.34  E-value=0.16  Score=44.23  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.2

Q ss_pred             ceeeeecCCCccHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +-.+|+|++|+|||||+..|+-
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g   49 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVT   49 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5678999999999999987765

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=86.21  E-value=0.43  Score=44.20  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -++|.|++|+|||+|+..++..
T Consensus         9 lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCcHHHHHHHHHHH
Confidence            4789999999999999999874

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=86.18  E-value=0.44  Score=44.95  Aligned_cols=26  Identities=31%  Similarity=0.525  Sum_probs=22.1

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+..+.+.|++|+|||+|+..+++..
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l   87 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQEL   87 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHh
Confidence            34569999999999999999888753

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=86.12  E-value=0.48  Score=43.48  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=20.9

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.-+.|.|++|+|||+|+..+++.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            567999999999999999988763

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=86.11  E-value=0.4  Score=41.67  Aligned_cols=23  Identities=22%  Similarity=0.572  Sum_probs=20.4

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -|+.|+|.+++|||+|+..++.+
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCC
Confidence            48999999999999999988753

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=86.11  E-value=0.76  Score=47.03  Aligned_cols=53  Identities=19%  Similarity=0.214  Sum_probs=35.8

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHHHhcCC-cEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNVAKAHG-GYSVFAGVGERTREGNDLYHEMIESG  247 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~-~v~V~alIGER~rEv~ef~~~l~~~g  247 (266)
                      +.-..|.||+|+|||+++..++....+..+ .+.+.   --.+.-+.++.+.+.+.|
T Consensus       371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~---a~tn~A~~~l~~~l~~~g  424 (800)
T 2wjy_A          371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC---APSNIAVDQLTEKIHQTG  424 (800)
T ss_dssp             SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE---ESSHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE---cCcHHHHHHHHHHHHHhC
Confidence            345789999999999999999886543222 24333   344566666666766655

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=85.85  E-value=0.39  Score=43.05  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=21.2

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +-.++.|+|.+|+|||||+..+..+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3347999999999999999988753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=85.77  E-value=0.22  Score=39.22  Aligned_cols=23  Identities=17%  Similarity=0.066  Sum_probs=19.0

Q ss_pred             CceeeeecCCCccHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.-+.|.|++|+|||+++..+.+
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCC
T ss_pred             CCcEEEECCCCccHHHHHHHHHH
Confidence            45689999999999999976543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=85.53  E-value=0.44  Score=41.85  Aligned_cols=21  Identities=43%  Similarity=0.683  Sum_probs=19.3

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++++|.+|+|||||+..+..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g   25 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTG   25 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            789999999999999998875

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=85.52  E-value=0.54  Score=44.66  Aligned_cols=27  Identities=33%  Similarity=0.345  Sum_probs=23.2

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      +...+.|.|.+|+||||++..++...+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999988654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=85.52  E-value=0.47  Score=41.45  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.8

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+.|.|.+|+||||++..++.
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998876

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=85.49  E-value=0.45  Score=48.53  Aligned_cols=24  Identities=13%  Similarity=0.065  Sum_probs=22.0

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.|++|+|||||+..++..
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl  599 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALI  599 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhh
Confidence            999999999999999999988754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=85.45  E-value=0.45  Score=41.24  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      =|++++|.+|+|||+|+..+..+
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999988754

>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*

Probab=85.44  E-value=0.81  Score=44.38  Aligned_cols=51  Identities=16%  Similarity=0.182  Sum_probs=31.3

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHHHhcCC----cEEEEEeecCCchHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNVAKAHG----GYSVFAGVGERTREGNDLYHE  242 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~----~v~V~alIGER~rEv~ef~~~  242 (266)
                      .+.+.|.|++|+|||+++..-+.+..+.++    .+.++..--.-.+|+.+-+.+
T Consensus        22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~   76 (647)
T 3lfu_A           22 RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQ   76 (647)
T ss_dssp             SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHH
Confidence            456789999999999998876665544321    255554443334444444333

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=85.43  E-value=0.66  Score=45.25  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=26.9

Q ss_pred             ccccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        186 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      .+.+.++..++|.|.+|+|||+++..|+....
T Consensus       161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl  192 (512)
T 2ius_A          161 VADLAKMPHLLVAGTTGSGASVGVNAMILSML  192 (512)
T ss_dssp             EEEGGGSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEcccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            34567899999999999999999988876543

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=85.39  E-value=0.48  Score=43.45  Aligned_cols=40  Identities=23%  Similarity=0.345  Sum_probs=28.2

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHh--cCCcEEEEEeecC
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAK--AHGGYSVFAGVGE  231 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~--~~~~v~V~alIGE  231 (266)
                      .|.-+.|.|+||+|||||+..++..-..  +| |.+.+-.+++
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~d-D~~~i~~~~~  184 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKRGHRLVAD-DNVEIREISK  184 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHTTCEEEES-SEEEEEESSS
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhcCCceecC-CeEEEEEcCC
Confidence            6778999999999999999998863110  12 3555554444

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=85.31  E-value=0.46  Score=41.28  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+...
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            8999999999999999988753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=85.25  E-value=0.47  Score=41.43  Aligned_cols=22  Identities=36%  Similarity=0.457  Sum_probs=19.6

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.++|.+|+|||||+..+...
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            7899999999999999988653

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=85.23  E-value=0.59  Score=40.51  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ..+.|.|++|+|||+++..+++..
T Consensus        39 ~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECcCCcCHHHHHHHHHHHh
Confidence            358999999999999999888753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=85.16  E-value=0.48  Score=44.11  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +++|+|.+|+|||||+..+.+..
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999888753

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=85.15  E-value=0.88  Score=46.53  Aligned_cols=53  Identities=19%  Similarity=0.196  Sum_probs=35.2

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHHHhc-CCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESG  247 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~-~~~v~V~alIGER~rEv~ef~~~l~~~g  247 (266)
                      +.-..|.||+|+|||+++..++....+. ...+.|.   .-...-+.++.+.+.+.|
T Consensus       375 ~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~---a~tn~A~d~l~~rL~~~g  428 (802)
T 2xzl_A          375 RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVC---APSNVAVDHLAAKLRDLG  428 (802)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE---ESSHHHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEE---cCcHHHHHHHHHHHHhhC
Confidence            4457899999999999999888755432 2124443   345556666666666654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=85.11  E-value=0.45  Score=41.54  Aligned_cols=20  Identities=35%  Similarity=0.649  Sum_probs=18.0

Q ss_pred             eeeeecCCCccHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii  213 (266)
                      ++.++|.+|+|||||+..|.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~   29 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLF   29 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            78999999999999998753

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=84.97  E-value=0.58  Score=43.59  Aligned_cols=24  Identities=38%  Similarity=0.519  Sum_probs=21.5

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |-+++|+|.+++|||||+..+..+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            568999999999999999988763

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=84.70  E-value=0.45  Score=41.63  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.=|+.|+|.+|+|||+|+..+..+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~  178 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTN  178 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhC
Confidence            4458999999999999999888764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=84.59  E-value=0.54  Score=42.04  Aligned_cols=22  Identities=32%  Similarity=0.676  Sum_probs=19.7

Q ss_pred             ceeeeecCCCccHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.++|+|.+|+|||||+..+..
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            5788999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d2jdid3	276	c.37.1.11 (D:82-357) Central domain of beta subuni	4e-56
d2jdia3	285	c.37.1.11 (A:95-379) Central domain of alpha subun	2e-45
d1fx0a3	276	c.37.1.11 (A:97-372) Central domain of alpha subun	1e-37
d2jdid2	72	b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, d	4e-33
d1skye2	82	b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, do	6e-29
d1fx0b2	79	b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, d	3e-28
d1xpua3	289	c.37.1.11 (A:129-417) Transcription termination fa	5e-19

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  179 bits (455), Expect = 4e-56
 Identities = 123/134 (91%), Positives = 129/134 (96%)

Query: 125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVD 184
           I+IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVD
Sbjct: 1   IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVD 60

Query: 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 244
           LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI
Sbjct: 61  LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 120

Query: 245 ESGVISLKDKSSKV 258
           ESGVI+LKD +SKV
Sbjct: 121 ESGVINLKDATSKV 134

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} Length = 285

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  152 bits (385), Expect = 2e-45
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 7/133 (5%)

Query: 125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVD 184
           + +PVG E LGR+++ +G  ID +GPI +     +   AP  +     +E + TGIK VD
Sbjct: 1   VDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVD 60

Query: 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YSVFAGVGERTREGN 237
            L P  +G +  + G    GKT + ++ I N  + + G       Y ++  +G++     
Sbjct: 61  SLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVA 120

Query: 238 DLYHEMIESGVIS 250
            L   + ++  + 
Sbjct: 121 QLVKRLTDADAMK 133

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

 Score =  131 bits (331), Expect = 1e-37
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 1/133 (0%)

Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
           IPV    LGR+IN + +PID RG I   +S  I + AP  +      E L TG+  +D +
Sbjct: 2   IPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAM 61

Query: 187 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
            P  +G +  + G    GKT +  + I N  +      V+  +G++      +     E 
Sbjct: 62  IPVGRGQRELIIGDRQTGKTAVATDTILN-QQGQNVICVYVAIGQKASSVAQVVTNFQER 120

Query: 247 GVISLKDKSSKVN 259
           G +      ++  
Sbjct: 121 GAMEYTIVVAETA 133

>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 72

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  113 bits (285), Expect = 4e-33
 Identities = 61/71 (85%), Positives = 64/71 (90%)

Query: 54  GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 113
           GR+VAVIGAVVDVQFD  LPPILNALEV+GR  RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct: 2   GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 61

Query: 114 RGQVVADSGNP 124
           RGQ V DSG P
Sbjct: 62  RGQKVLDSGAP 72

>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]} Length = 82

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Bacillus sp., strain ps3 [TaxId: 1409]

 Score =  102 bits (257), Expect = 6e-29
 Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 8/80 (10%)

Query: 53  NGRVVAVIGAVVDVQFDHD-LPPILNALEVEGRSPR-------LVLEVAQHLGENTVRTI 104
            GRV+ V+G VVDV+F++  LP I NAL+++ ++         L LEVA HLG++TVRTI
Sbjct: 3   RGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTI 62

Query: 105 AMDGTEGLVRGQVVADSGNP 124
           AM  T+GL+RG  V D+G P
Sbjct: 63  AMASTDGLIRGMEVIDTGAP 82

>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 79

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

 Score =  100 bits (252), Expect = 3e-28
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 6/77 (7%)

Query: 54  GRVVAVIGAVVDVQFDHD-LPPILNALEVEGRSP-----RLVLEVAQHLGENTVRTIAMD 107
           GR+  +IG V++V F    +P I NAL V+GR        +  EV Q LG N VR +AM 
Sbjct: 3   GRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMS 62

Query: 108 GTEGLVRGQVVADSGNP 124
            T+GL RG  V D+G P
Sbjct: 63  ATDGLTRGMEVIDTGAP 79

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Length = 289

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

 Score = 82.4 bits (203), Expect = 5e-19
 Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 151 IDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM 210
           I  +    +HA++   +E            +V+DL +P  +G +  +      GKT+L+ 
Sbjct: 3   ILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 61

Query: 211 ELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
            +  ++A  H    +   + +   E       +++  V++
Sbjct: 62  NIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVA 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	100.0
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	100.0
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	100.0
d1xpua3	289	Transcription termination factor Rho, ATPase domai	99.82
d2jdid2	72	F1 ATP synthase beta subunit, domain 1 {Rat (Rattu	99.65
d1fx0b2	79	F1 ATP synthase beta subunit, domain 1 {Spinach (S	99.55
d1skye2	82	F1 ATP synthase beta subunit, domain 1 {Bacillus s	99.53
d2jdia2	71	F1 ATP synthase alpha subunit, domain 1 {Cow (Bos	97.95
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.88
d1skyb2	75	F1 ATP synthase alpha subunit, domain 1 {Bacillus	97.88
d1fx0a2	72	F1 ATP synthase alpha subunit, domain 1 {Spinach (	97.76
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.72
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.65
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.41
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.36
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.29
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.28
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.22
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.08
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.85
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.83
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.63
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.6
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.43
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.42
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.4
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.35
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.29
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.28
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.28
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.25
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.24
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.23
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.2
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.19
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.15
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.14
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.14
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.82
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.75
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.73
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.73
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.65
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.57
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.51
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.44
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.35
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.33
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.28
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.24
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.21
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.18
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.13
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.13
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.09
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.04
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.03
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.0
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.98
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.91
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.88
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.67
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.61
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.6
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.58
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.54
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.44
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.42
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.4
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.4
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	94.39
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.36
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.25
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.24
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.23
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.2
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.19
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	94.07
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	93.97
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.96
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.91
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.89
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.88
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.88
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.87
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.84
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.83
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.83
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.82
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.79
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	93.76
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.75
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.72
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.66
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.64
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.63
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.59
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.59
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	93.56
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.56
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.54
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	93.54
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	93.53
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.46
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.46
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.46
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.46
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	93.42
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.42
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.3
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.27
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	93.2
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.18
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.17
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.14
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.14
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.13
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.13
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.07
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.03
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	93.0
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	92.98
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.96
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	92.95
d1okkd2	207	GTPase domain of the signal recognition particle r	92.94
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	92.92
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.89
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.87
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	92.79
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.74
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.71
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.65
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	92.6
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	92.53
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.39
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.37
d1ls1a2	207	GTPase domain of the signal sequence recognition p	92.33
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.28
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.25
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.24
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	92.21
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.21
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	92.18
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.16
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	92.14
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.13
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.12
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	92.1
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	92.08
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	91.99
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	91.99
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.93
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	91.93
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.83
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.75
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	91.7
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	91.69
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	91.67
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	91.61
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.59
d1vmaa2	213	GTPase domain of the signal recognition particle r	91.55
d1j8yf2	211	GTPase domain of the signal sequence recognition p	91.26
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	91.26
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.17
d2qy9a2	211	GTPase domain of the signal recognition particle r	91.08
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.06
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	91.03
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	90.91
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.88
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	90.84
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	90.72
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	90.7
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	90.62
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.59
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	90.59
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.49
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	90.37
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	90.34
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	90.27
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	90.08
d2fh5b1	207	Signal recognition particle receptor beta-subunit	90.07
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	90.03
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	89.78
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	89.57
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	89.45
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	89.08
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	88.94
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	88.66
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	88.55
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	88.36
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	88.29
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	87.58
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	87.53
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	87.39
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	86.38
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	86.13
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	85.94
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	85.86
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	85.59
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	85.53
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	85.44
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	85.35
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	85.26
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	85.05
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	84.91
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.22
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	83.94
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	83.91
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	83.78
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	83.72
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	83.69
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	83.4
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	83.09
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	82.14
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	82.12
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	81.57
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	81.53
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	81.42
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	81.4
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	81.3
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	81.14
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	81.01
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	81.01
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	80.38
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	80.07

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.3e-43  Score=316.02  Aligned_cols=141  Identities=87%  Similarity=1.311  Sum_probs=136.1

Q ss_pred             ccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCcc
Q psy17544        125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG  204 (266)
Q Consensus       125 ~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~G  204 (266)
                      ++||||++|||||+|++|+|||+++++...+++|++.++|+|++|.++++||+||||+||+|+|||||||++|||++|+|
T Consensus         1 l~vpVG~~lLGRVid~lG~piDg~~~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGIraID~l~pigkGQr~~If~~~g~G   80 (276)
T d2jdid3           1 IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG   80 (276)
T ss_dssp             CEEECSGGGBTCEECTTSCBCSSSCCCCCSCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSS
T ss_pred             CeeecCccccCCEeCCCcceeCCCCCCCCcccccccCCCCChhHhcCCCcccccCceeeeeeccccCCCEEEeeCCCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        205 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       205 KT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ||+|+.+|++|++++|.+++||++||||+||++||+++|.++|+++.++..+|++++++++
T Consensus        81 Kt~l~~~i~~~~~~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~tvvv~~~s  141 (276)
T d2jdid3          81 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQM  141 (276)
T ss_dssp             HHHHHHHHHHHHTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECT
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEEEeccChHHHHHHHHHHHhcCccccccccceEEEEEECC
Confidence            9999999999876777789999999999999999999999999999999999999999986

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-38  Score=290.10  Aligned_cols=135  Identities=25%  Similarity=0.493  Sum_probs=126.7

Q ss_pred             ccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCcc
Q psy17544        125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG  204 (266)
Q Consensus       125 ~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~G  204 (266)
                      ++||||++|||||+|++|+|||+.+++...++++++.++|+|++|.++++||+||||+||+|+||+||||++|||++|+|
T Consensus         1 i~VPVG~~lLGRVid~~G~piDg~~~~~~~~~~~i~~~~p~~~~R~~i~e~l~TGIraID~l~pig~GQr~~If~~~g~G   80 (285)
T d2jdia3           1 VDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTG   80 (285)
T ss_dssp             CEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSS
T ss_pred             CccccCcCccCcEECCCccccCCCCCCCCCccccccCCCcCchhccCCCcccccCceEEecccCccCCCEEEeecCCCCC
Confidence            46999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcC-------CcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        205 KTVLIMELINNVAKAH-------GGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       205 KT~L~~~ii~~~a~~~-------~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      ||+|++++++|+...+       +.++||++||||+||+.||++++.+.++++      |+++|++++
T Consensus        81 Kt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~~~------~tvvv~~ts  142 (285)
T d2jdia3          81 KTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMK------YTIVVSATA  142 (285)
T ss_dssp             HHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGG------GEEEEEECT
T ss_pred             hHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhccccccc------ceEEEEECC
Confidence            9999999999865332       238999999999999999999999999998      999999875

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=100.00  E-value=8.9e-39  Score=289.88  Aligned_cols=133  Identities=26%  Similarity=0.451  Sum_probs=126.4

Q ss_pred             cccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccH
Q psy17544        126 KIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK  205 (266)
Q Consensus       126 ~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GK  205 (266)
                      .||||++|||||+|++|+|||+++++..++++|++.++|+|++|.++++||+||||+||+|+|||||||++|||++|+||
T Consensus         1 qvPvg~~llGRv~d~~G~piDg~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pig~GQr~~Ifg~~g~GK   80 (276)
T d1fx0a3           1 QIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGK   80 (276)
T ss_dssp             EEEESSSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSH
T ss_pred             CCCCCccccccEeCCCccccCCCCCCCCCccccccCCCcChhhccCCCccccccceEEeccccccCCceEeeccCCCCCh
Confidence            48999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544        206 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR  265 (266)
Q Consensus       206 T~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~  265 (266)
                      |+|+.++++++ .++.+++||++||||+||+.||++++.+.++++      |+++|++++
T Consensus        81 t~l~~~~~~~~-~~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~------~tvvv~~ts  133 (276)
T d1fx0a3          81 TAVATDTILNQ-QGQNVICVYVAIGQKASSVAQVVTNFQERGAME------YTIVVAETA  133 (276)
T ss_dssp             HHHHHHHHHTC-CTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGG------SEEEEEECT
T ss_pred             HHHHHHHHhhh-cccCceeeeeeecchhHHHHHHHHhhccCCcce------eeeeccccc
Confidence            99999988875 556679999999999999999999999999998      999999875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.8e-21  Score=175.19  Aligned_cols=90  Identities=19%  Similarity=0.249  Sum_probs=73.6

Q ss_pred             CCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecC
Q psy17544        153 TDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGE  231 (266)
Q Consensus       153 ~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGE  231 (266)
                      .+...||+...+.++||.. .++++||+|+||+|+|||||||++||||+|+|||+|+.+|++|+..++.+ +++++++||
T Consensus         5 fd~l~Pi~p~~r~~le~~~-~~~~~~~~r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~~v~~~~~ige   83 (289)
T d1xpua3           5 FENLTPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE   83 (289)
T ss_dssp             GGCCCCCSTTSBCCC-----CCSTHHHHHHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred             CCCCCCCCCCCccccccCC-CCcccccceeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEeece
Confidence            3456677777777888876 44778999999999999999999999999999999999999987655544 788899999


Q ss_pred             CchHHHHHHHHh
Q psy17544        232 RTREGNDLYHEM  243 (266)
Q Consensus       232 R~rEv~ef~~~l  243 (266)
                      |++|++||++..
T Consensus        84 r~~ev~~~~~~~   95 (289)
T d1xpua3          84 RPEEVTEMQRLV   95 (289)
T ss_dssp             CHHHHHHHHHHC
T ss_pred             eHHHHHhHHhhc
Confidence            999999998753

>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.5e-16  Score=113.08  Aligned_cols=72  Identities=85%  Similarity=1.222  Sum_probs=68.3

Q ss_pred             ccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCC
Q psy17544         53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP  124 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~  124 (266)
                      +|+|++|.|++++++|++.+|+|++.+++...+.++.+||.+|++++.+|+++|++|+||++|++|..||.|
T Consensus         1 TG~VvqV~G~VVDV~F~~~lP~i~~aL~v~~~~~~~vlEV~qhlg~~~VR~IAl~~TdGL~RG~~V~~tG~P   72 (72)
T d2jdid2           1 TGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAP   72 (72)
T ss_dssp             EEEEEEEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSS
T ss_pred             CceEEEEECCEEEEECCCCCCchheEEEEeCCCceEEEEEeeecCCCeEEEEEecCccCccCCCEEEeCCCC
Confidence            499999999999999998899999999998766779999999999999999999999999999999999976

>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=99.55  E-value=1.6e-14  Score=106.69  Aligned_cols=72  Identities=47%  Similarity=0.770  Sum_probs=65.5

Q ss_pred             ccEEEEEECcEEEEEecC-CCcccccEEEEecCC-----CceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCC
Q psy17544         53 NGRVVAVIGAVVDVQFDH-DLPPILNALEVEGRS-----PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP  124 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~-~~p~ig~~~~v~~~~-----~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~  124 (266)
                      .|+|++|.|++|+++|++ .+|.|++.+++...+     ..+.+||.+|+|++.+|+++|++|+||++|++|..||.|
T Consensus         2 ~G~IvqV~G~VVDV~F~~~~lP~I~~AL~v~~~~~~~~~~~lvlEV~qhlg~~~VR~IAm~sTdGL~RG~~V~dtG~P   79 (79)
T d1fx0b2           2 LGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAP   79 (79)
T ss_dssp             CEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSS
T ss_pred             CcEEEEEEcceEEEECCCCCCCCcceeEEEeccCCCCCeeEEEEEEeEccCCCEEEEEEecCCcCccCCCEEEeCCCC
Confidence            599999999999999975 699999999986422     258999999999999999999999999999999999976

>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Bacillus sp., strain ps3 [TaxId: 1409]

Probab=99.53  E-value=1.6e-14  Score=107.48  Aligned_cols=72  Identities=56%  Similarity=0.939  Sum_probs=65.5

Q ss_pred             ccEEEEEECcEEEEEecC-CCcccccEEEEecCCC-------ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCC
Q psy17544         53 NGRVVAVIGAVVDVQFDH-DLPPILNALEVEGRSP-------RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP  124 (266)
Q Consensus        53 ~GrV~~I~G~vV~v~~~~-~~p~ig~~~~v~~~~~-------~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~  124 (266)
                      .|+|++|.|++|+++|++ .+|.|++.+++.....       .+.+||.+|+|++.||+++|++|+||++|++|..||.|
T Consensus         3 ~G~VvqV~G~VVDV~F~~~~lP~I~~AL~v~~~~~~~~~~~~~lvlEV~qhlg~~~VR~IAm~~TdGL~RG~~V~dTG~P   82 (82)
T d1skye2           3 RGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAP   82 (82)
T ss_dssp             EEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEE
T ss_pred             CcEEEEEEcceEEEECCCCCCCCcceEEEEEecCCCcccccceEEEEehhhcCCCeEEEEEecCccCccCCCEEEeCCCC
Confidence            599999999999999985 6999999999875322       48999999999999999999999999999999999865

>d2jdia2 b.49.1.1 (A:24-94) F1 ATP synthase alpha subunit, domain 1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.95  E-value=2.8e-05  Score=55.25  Aligned_cols=68  Identities=16%  Similarity=0.270  Sum_probs=58.2

Q ss_pred             ccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCC
Q psy17544         51 KGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGN  123 (266)
Q Consensus        51 ~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~  123 (266)
                      +..|+|.+|...++.+++..++ ..++.+++.++   ..+ ++..++++.+.+++|++.+.|+.|++|..||+
T Consensus         3 ~e~G~V~~VgDGIA~V~GL~~a-~~~Elv~F~~g---~~G-lalnL~e~~VgvVllg~~~~i~eG~~V~rTG~   70 (71)
T d2jdia2           3 EETGRVLSIGDGIARVHGLRNV-QAEEMVEFSSG---LKG-MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGA   70 (71)
T ss_dssp             TTEEEEEEEETTEEEEEECTTC-BTTCEEEETTS---CEE-EEEEECSSCEEEEESSCGGGCCTTCEEECCCC
T ss_pred             ceEEEEEEEcCcEEEEECCccc-ccCCEEEECCC---CEE-EEEeecccEEEEEEECCCCccCCCCEEEeccc
Confidence            3579999999999999998776 78899999653   344 44458899999999999999999999999986

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.88  E-value=4.4e-06  Score=69.60  Aligned_cols=67  Identities=18%  Similarity=0.255  Sum_probs=53.4

Q ss_pred             cccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHH
Q psy17544        171 VEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND  238 (266)
Q Consensus       171 ~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~e  238 (266)
                      .-+..+.||+..+|-++.  +-+|.-..|+|++|+|||+|+.+++.+.++ ++..++|...-|..++..+
T Consensus         3 ~~~~ri~TG~~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~-~~~~~~~is~e~~~~~~~~   71 (242)
T d1tf7a2           3 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFAYEESRAQLLR   71 (242)
T ss_dssp             CCCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEESSSCHHHHHH
T ss_pred             CCCCccCCCcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHH-hccccceeeccCCHHHHHH
Confidence            335568999999999998  889999999999999999999999998654 4455666666665555433

>d1skyb2 b.49.1.1 (B:21-95) F1 ATP synthase alpha subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 1
species: Bacillus sp., strain ps3 [TaxId: 1409]

Probab=97.88  E-value=3.1e-05  Score=55.58  Aligned_cols=70  Identities=19%  Similarity=0.192  Sum_probs=59.0

Q ss_pred             CccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCC
Q psy17544         50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP  124 (266)
Q Consensus        50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~  124 (266)
                      .+..|+|.+|...++++.+..++ ..++.+++.++   ..+-+. .++++.+.+++|++...|+.|+.|+.||+.
T Consensus         5 ~~e~G~V~~V~DGIA~v~GL~~a-~~gElv~F~~g---~~Glvl-nLe~d~VgvVllg~~~~i~~G~~V~rTg~v   74 (75)
T d1skyb2           5 VSDVGTVIQVGDGIARAHGLDNV-MSGEAVEFANA---VMGMAL-NLEENNVGIVILGPYTGIKEGDEVRRTGRI   74 (75)
T ss_dssp             GGGEEEEEEEETTEEEEEECTTC-CTTEEEEETTS---CEEEEE-EEETTEEEEEESSCCSSCCTTCEEEEEEEE
T ss_pred             eEEeEEEEEEcCcEEEEECCccc-ccCCeEEeCCC---CEEEEE-eccCcEEEEEEECCCCcccCCCEEEecccc
Confidence            34589999999999999998876 78999998643   455444 478899999999999999999999999863

>d1fx0a2 b.49.1.1 (A:25-96) F1 ATP synthase alpha subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 1
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=97.76  E-value=3.1e-05  Score=55.16  Aligned_cols=68  Identities=19%  Similarity=0.178  Sum_probs=58.4

Q ss_pred             cccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCC
Q psy17544         52 GNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP  124 (266)
Q Consensus        52 ~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~  124 (266)
                      ..|+|.+|...++++++..++ ..+|.+++.++   ..+- +..++++.+.+++|++...|+.|+.|+.||+.
T Consensus         4 ~~G~V~~VgDGIa~V~GL~~~-~~~Elv~F~~g---~~G~-alnLe~d~VgvVllg~~~~i~~G~~V~rTG~v   71 (72)
T d1fx0a2           4 NTGTVLQVGDGIARIHGLDEV-MAGELVEFEEG---TIGI-ALNLESNNVGVVLMGDGLMIQEGSSVKATGRI   71 (72)
T ss_dssp             TEEEECCCCSSEEEEEECTTC-CTTCCEEETTC---CEEE-EEEECSSEEEEEECSCGGGCCTTCEEECCCCC
T ss_pred             EEEEEEEecCcEEEEeCCccc-ccCCEEEeCCC---CeEE-EEeccCCEEEEEEECCCCccCCCCEEEecccc
Confidence            479999999999999998876 78999999653   3454 44478999999999999999999999999974

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.72  E-value=8.8e-06  Score=66.24  Aligned_cols=65  Identities=20%  Similarity=0.206  Sum_probs=50.5

Q ss_pred             ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHH
Q psy17544        174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND  238 (266)
Q Consensus       174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~e  238 (266)
                      +-+.|||..+|-++-  +-+|.-..|+|++|+|||+|+.+++.+.+...+..+.|.-..+..++..+
T Consensus         6 ~~i~TGi~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~   72 (242)
T d1tf7a1           6 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIK   72 (242)
T ss_dssp             CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHH
T ss_pred             CcccCCcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHH
Confidence            456799999999997  88999999999999999999999887655433335666666666555443

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=6.9e-06  Score=64.87  Aligned_cols=43  Identities=28%  Similarity=0.343  Sum_probs=39.7

Q ss_pred             cccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        175 ILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       175 ~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      -+.||++.+|-++.  +-+|+=..|.|++|+|||+|+.+++.|.+
T Consensus         4 ri~TG~~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_           4 QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEcCCCHHHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            47899999999998  88999999999999999999999998754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=7.2e-06  Score=67.17  Aligned_cols=69  Identities=25%  Similarity=0.261  Sum_probs=52.8

Q ss_pred             ccccccccccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhc-----CCcEEEEEeecCC
Q psy17544        164 PEFVEMSVEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGER  232 (266)
Q Consensus       164 p~~~~R~~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~-----~~~v~V~alIGER  232 (266)
                      .+...|..--+.+.|||..+|.++.  +-+|.=+.|.|++|+|||+|+.+++.+.+..     .+..++|.-.-+.
T Consensus         4 ~~~~~~~~~~~~i~TGi~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~   79 (251)
T d1szpa2           4 ADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT   79 (251)
T ss_dssp             HHHHHHHHSSCEECCSCHHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSC
T ss_pred             HHHHHHhcCCCeecCCCHHHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecch
Confidence            3445666667889999999999998  7899999999999999999999998763221     1235666655443

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.36  E-value=4e-05  Score=63.31  Aligned_cols=71  Identities=23%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             ccccccccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhc-----CCc-EEEEEeecCCchHH
Q psy17544        166 FVEMSVEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGG-YSVFAGVGERTREG  236 (266)
Q Consensus       166 ~~~R~~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~-----~~~-v~V~alIGER~rEv  236 (266)
                      .++|..--+.+.|||..+|.++-  +.+|+=+.|.|++|+|||+|+.+++.+.+..     .+. ...|....++..+.
T Consensus         8 ~~~~~~~i~ri~TGi~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (254)
T d1pzna2           8 YLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER   86 (254)
T ss_dssp             HHHHHHTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred             HHHhhcCCCeECCCCHHHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHH
Confidence            34555555679999999999988  8899999999999999999999999875321     112 44444555555443

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.29  E-value=2.4e-05  Score=63.70  Aligned_cols=48  Identities=19%  Similarity=0.111  Sum_probs=43.0

Q ss_pred             ccccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        170 SVEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       170 ~~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      ..-...+.||+.-+|-++.  +.+|+=..|.|++|+|||+|+.+++.|.+
T Consensus        10 ~~~~~~i~TG~~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          10 RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             HTTCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             hCCCceecCCCHHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3445679999999999998  88999999999999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=4e-05  Score=63.08  Aligned_cols=52  Identities=23%  Similarity=0.145  Sum_probs=44.7

Q ss_pred             ccccccccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        166 FVEMSVEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       166 ~~~R~~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      ..+|..--..+.|||..+|-++-  +-+|+=+.|.|++|+|||+|+.+++.+.+
T Consensus         9 ~~~~~~~~~ri~TGi~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~   62 (258)
T d1v5wa_           9 YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQ   62 (258)
T ss_dssp             HHHHGGGCCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred             HHHhhcCCceecCCCHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34554445679999999999997  99999999999999999999999998654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.22  E-value=0.00013  Score=61.75  Aligned_cols=55  Identities=20%  Similarity=0.213  Sum_probs=44.1

Q ss_pred             ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544        174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  228 (266)
Q Consensus       174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al  228 (266)
                      ..+.||+..+|-++- +.+|+=+.|.|.+|+|||+|+.+++.|++..++.-+.|..
T Consensus        16 ~~i~TG~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s   71 (277)
T d1cr2a_          16 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (277)
T ss_dssp             CBCCCSCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             cccCCCchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEee
Confidence            568999999997653 6699999999999999999999999887655544344443

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00016  Score=62.86  Aligned_cols=53  Identities=25%  Similarity=0.439  Sum_probs=43.3

Q ss_pred             ccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544        174 EILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  227 (266)
Q Consensus       174 e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a  227 (266)
                      +++.||+..+|.++-   +-+|+=.-|+|++|+|||+|+.+++.+..+ .+..++|.
T Consensus        33 ~~isTG~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~-~g~~~vyi   88 (263)
T d1u94a1          33 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFI   88 (263)
T ss_dssp             CEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred             CeEccCCHHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEE
Confidence            688999999998875   338999999999999999999999998654 33445553

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.85  E-value=0.00029  Score=61.29  Aligned_cols=53  Identities=26%  Similarity=0.469  Sum_probs=42.4

Q ss_pred             cccccccceEeecccccc---cCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEE
Q psy17544        173 QEILVTGIKVVDLLAPYA---KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF  226 (266)
Q Consensus       173 ~e~l~TGIraID~L~pig---kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~  226 (266)
                      -+++.||...+|.++..|   +|.=.-|+|++|+|||+|+.+++.+..+ .+..++|
T Consensus        35 ~~~i~TGs~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk-~g~~v~y   90 (268)
T d1xp8a1          35 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAF   90 (268)
T ss_dssp             CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEE
T ss_pred             CCeEcCCCHHHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHh-CCCEEEE
Confidence            357999999999999755   7778899999999999999999987544 3334443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.83  E-value=0.0004  Score=60.48  Aligned_cols=55  Identities=24%  Similarity=0.450  Sum_probs=44.5

Q ss_pred             ccccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544        172 EQEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  227 (266)
Q Consensus       172 ~~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a  227 (266)
                      .-+.+.||+..+|.++.   +-+|+=.-|+|++|+|||+|+.+++.+..+ .+..+||.
T Consensus        37 ~~~~i~TG~~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~-~g~~~vyI   94 (269)
T d1mo6a1          37 PISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFI   94 (269)
T ss_dssp             CSCCBCCSCHHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHH-TTCEEEEE
T ss_pred             ccceEccCCHHHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhc-CCCEEEEE
Confidence            34679999999999986   668999999999999999999999987544 33455553

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.63  E-value=0.00077  Score=52.53  Aligned_cols=23  Identities=39%  Similarity=0.689  Sum_probs=20.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |++|.|++|+|||||+..++...
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHhcC
Confidence            78999999999999999888754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.60  E-value=0.00058  Score=58.57  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             cceEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        179 GIKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       179 GIraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +..|+| .=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        15 ~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence            345675 448899999999999999999999987754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00075  Score=57.58  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=28.8

Q ss_pred             eEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .++ |.=+.+-+|+.++|.|++|+|||||+.+|+.
T Consensus        14 ~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          14 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence            444 4568899999999999999999999986654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00072  Score=58.09  Aligned_cols=31  Identities=29%  Similarity=0.351  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|..
T Consensus        32 ~isl~i~~Ge~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          32 GLTFTLRPGEVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             ceEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            4557899999999999999999999987654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.40  E-value=0.00067  Score=57.81  Aligned_cols=34  Identities=15%  Similarity=0.273  Sum_probs=28.1

Q ss_pred             eEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +|+| .=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus        19 ~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEeceEEEEcCCCEEEEECCCCCCcchhhHhccC
Confidence            4553 457899999999999999999999986543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.35  E-value=0.0009  Score=51.42  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.8

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+|.|+|++|+|||||+..|+..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.0009  Score=58.39  Aligned_cols=31  Identities=29%  Similarity=0.533  Sum_probs=27.5

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|..
T Consensus        54 ~isl~i~~Ge~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          54 NINLNIEKGEMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             EEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence            5557899999999999999999999987764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.002  Score=49.30  Aligned_cols=24  Identities=38%  Similarity=0.458  Sum_probs=21.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      -+.|.|++|+|||||+..++....
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            378999999999999999998654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.28  E-value=0.001  Score=56.98  Aligned_cols=36  Identities=25%  Similarity=0.369  Sum_probs=29.9

Q ss_pred             cceEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        179 GIKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       179 GIraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +..|+| .=+.+-+|+.++|.|++|+|||||+.+|..
T Consensus        18 ~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence            445564 458899999999999999999999986654

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.00095  Score=57.06  Aligned_cols=31  Identities=26%  Similarity=0.465  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|..
T Consensus        21 ~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          21 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            4557899999999999999999999987765

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.24  E-value=0.00078  Score=55.76  Aligned_cols=31  Identities=26%  Similarity=0.509  Sum_probs=27.3

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus        19 ~is~~i~~Gei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          19 RITMTIEKGNVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             EEEEEEETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred             ceEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence            4447899999999999999999999987765

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.23  E-value=0.001  Score=56.88  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=27.1

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|..
T Consensus        20 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3447899999999999999999999987754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.20  E-value=0.00076  Score=57.93  Aligned_cols=35  Identities=20%  Similarity=0.488  Sum_probs=29.9

Q ss_pred             ceEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        180 IKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       180 IraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.++ |.=+.+-+|+.++|+|++|+|||||+.+|..
T Consensus        18 ~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHc
Confidence            4566 5558899999999999999999999987754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.19  E-value=0.001  Score=57.11  Aligned_cols=30  Identities=20%  Similarity=0.383  Sum_probs=26.3

Q ss_pred             cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .=+.+-+|++++|.|++|+|||||+..|..
T Consensus        34 isl~i~~Ge~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          34 INLKIPAGKTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence            337789999999999999999999987654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.001  Score=56.99  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=28.5

Q ss_pred             eEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +|+ |.=+.+-+|+.++|.|++|+|||||+..|.-
T Consensus        19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTT
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            445 4457899999999999999999999986653

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.14  E-value=0.0011  Score=56.47  Aligned_cols=33  Identities=21%  Similarity=0.376  Sum_probs=28.4

Q ss_pred             Ee-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        182 VV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       182 aI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ++ |.=+.+-+|+-++|.|++|+|||||+..|+.
T Consensus        15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred             EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhc
Confidence            44 3558899999999999999999999987754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.14  E-value=0.0011  Score=57.23  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=29.7

Q ss_pred             cceEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        179 GIKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       179 GIraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +..++| .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        14 ~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence            345664 448999999999999999999999987653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.82  E-value=0.0012  Score=56.86  Aligned_cols=31  Identities=29%  Similarity=0.432  Sum_probs=26.6

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.=+.+-+|++++|.|++|+|||||+..|..
T Consensus        36 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          36 DINLSIEKGETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             ceEEEEcCCCEEEEECCCCCcHHHHHHHHHh
Confidence            3447899999999999999999999986654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0019  Score=54.48  Aligned_cols=28  Identities=25%  Similarity=0.462  Sum_probs=25.2

Q ss_pred             cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        187 APYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.+-+|+-++|+|++|+|||||+..|..
T Consensus        20 l~I~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          20 GEVRAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEEETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4788999999999999999999987764

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0055  Score=46.67  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.7

Q ss_pred             eeeecCCCccHHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      ++|.|.+|+|||||+..|+++..
T Consensus         5 i~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999998653

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.73  E-value=0.0023  Score=54.51  Aligned_cols=36  Identities=22%  Similarity=0.428  Sum_probs=29.7

Q ss_pred             cceEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        179 GIKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       179 GIraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +..++ |.=+.+.+|+-++|+|++|+|||||+..|.-
T Consensus        18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence            44555 4447899999999999999999999986654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.0032  Score=51.64  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -+.++||+|+|||+++..+++..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhcc
Confidence            48899999999999999888753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.57  E-value=0.0035  Score=47.90  Aligned_cols=23  Identities=48%  Similarity=0.521  Sum_probs=20.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ++.|.|++|+||||++..|+...
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999888753

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.51  E-value=0.0047  Score=47.41  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=21.7

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ||=+|.|+|++|+||||++..|+..
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            4557999999999999999988764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.44  E-value=0.0037  Score=53.47  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=30.4

Q ss_pred             cceEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        179 GIKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       179 GIraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.+++ |.=+++.+|+-++|.|++|+|||||+..|.-
T Consensus        16 ~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~G   52 (254)
T d1g6ha_          16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG   52 (254)
T ss_dssp             TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHC
Confidence            45666 5567899999999999999999999987654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.0049  Score=46.09  Aligned_cols=23  Identities=39%  Similarity=0.556  Sum_probs=20.9

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +|+.|+|++++|||+|+..+..+
T Consensus         1 ~KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           1 GKLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999988764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.33  E-value=0.0058  Score=48.42  Aligned_cols=39  Identities=28%  Similarity=0.393  Sum_probs=28.8

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE  235 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rE  235 (266)
                      ||=|+-|+|++|+||||++..|+...  .    .++.-+|+--||
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~--g----~~~i~~gdllr~   40 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF--C----VCHLATGDMLRA   40 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH--T----CEEEEHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh--C----CeEEeHHHHHHH
Confidence            57799999999999999999888754  1    334455654443

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.28  E-value=0.0051  Score=46.60  Aligned_cols=21  Identities=33%  Similarity=0.387  Sum_probs=18.9

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.|.|++|+||||++..+++.
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999988764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.24  E-value=0.004  Score=52.88  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=28.0

Q ss_pred             eEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        181 KVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       181 raID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++| .=+.+-+|+-+||+|++|+|||||+..|..
T Consensus        16 ~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G   50 (238)
T d1vpla_          16 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST   50 (238)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3443 446789999999999999999999986654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.21  E-value=0.0062  Score=47.45  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=20.4

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ||.|+|++|+||||++..|+...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999887754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.18  E-value=0.0065  Score=46.26  Aligned_cols=26  Identities=27%  Similarity=0.224  Sum_probs=23.3

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +|.-+.|.|.+|+||||++..+++..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            68889999999999999999998765

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.13  E-value=0.006  Score=48.41  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=21.9

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.+.+.|+|++|+||||++..|+..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999988764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.13  E-value=0.011  Score=45.72  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=20.7

Q ss_pred             eeeecCCCccHHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      ++|.|.+|+|||||+..+++...
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999998754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.09  E-value=0.013  Score=51.55  Aligned_cols=38  Identities=29%  Similarity=0.374  Sum_probs=28.7

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  227 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a  227 (266)
                      ++.-++||-|++|+|||||+..++....+....+.|++
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaVia   86 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA   86 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeee
Confidence            57789999999999999999999986543222244443

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.04  E-value=0.0074  Score=51.46  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=26.2

Q ss_pred             EeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+|.=+.++ ++.++|+|++|+|||||+..|+.
T Consensus        15 ~~~vs~~~~-~e~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          15 RLNVDFEMG-RDYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEEEeC-CEEEEEECCCCChHHHHHHHHHc
Confidence            357667776 46999999999999999987765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.03  E-value=0.0073  Score=45.37  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|.|.+|+|||+|+..++.+
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999998875

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.013  Score=51.84  Aligned_cols=29  Identities=17%  Similarity=0.311  Sum_probs=26.1

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      .++.-|+||-|++|+|||||+..+++...
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999987654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.0071  Score=45.06  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=18.9

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |-|.|++|+||||++..++..
T Consensus         5 I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           5 IFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            668899999999999999875

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.0091  Score=49.65  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=28.4

Q ss_pred             EeecccccccCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544        182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK  218 (266)
Q Consensus       182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~  218 (266)
                      .|++|+|   |+-..|+|++|+|||+|+.+++.+.+.
T Consensus        22 li~G~~p---g~~~~i~G~~G~GKS~l~l~la~~ia~   55 (274)
T d1nlfa_          22 VLPNMVA---GTVGALVSPGGAGKSMLALQLAAQIAG   55 (274)
T ss_dssp             EETTEET---TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             HhCCccC---CcEEEEEeCCCCCHHHHHHHHHHHHHc
Confidence            3667665   678999999999999999999987653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.88  E-value=0.0072  Score=45.52  Aligned_cols=20  Identities=35%  Similarity=0.454  Sum_probs=17.6

Q ss_pred             eeeecCCCccHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +.|.|++|+|||||+..++.
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56799999999999998865

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0065  Score=47.43  Aligned_cols=26  Identities=35%  Similarity=0.482  Sum_probs=23.2

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ||.-|-|.|.+|+|||||+..|+...
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            67888899999999999999998764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.61  E-value=0.042  Score=44.34  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=23.0

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ....-+.|.|++|+|||+++..++++.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999988864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.60  E-value=0.011  Score=46.34  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |+-|+|++|+||||++..|+...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999888754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.58  E-value=0.0084  Score=45.19  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|||||+|+..+..+
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999988764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.54  E-value=0.018  Score=44.60  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.3

Q ss_pred             eeeecCCCccHHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      +||-|++|+|||||+..|.....
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            78999999999999999987643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.44  E-value=0.0082  Score=46.03  Aligned_cols=26  Identities=35%  Similarity=0.507  Sum_probs=22.0

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -|--|+.|+|.+|+|||+|+..+..+
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34569999999999999999888654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.42  E-value=0.02  Score=43.58  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.1

Q ss_pred             eeeecCCCccHHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      +.|.|++|+||||++..|+....
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999987653

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.012  Score=46.00  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.5

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |+.|+|++|+||||++..|+...
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999888754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.40  E-value=0.013  Score=46.00  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.5

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ||-|+|++|+||||++..|+...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999888754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.39  E-value=0.011  Score=46.77  Aligned_cols=23  Identities=17%  Similarity=0.173  Sum_probs=20.5

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ++.|.|++|+||||++..|+.+.
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999887764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.36  E-value=0.014  Score=46.76  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=22.6

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +|.=|+.|+|++|+||||++..|+.+
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            45668999999999999999988764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.015  Score=45.94  Aligned_cols=23  Identities=22%  Similarity=0.471  Sum_probs=20.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ++.|+||+|+||||++..|+...
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999888754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.24  E-value=0.0085  Score=48.67  Aligned_cols=26  Identities=23%  Similarity=0.232  Sum_probs=22.4

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .++-+.|.|++|+|||+|+..+++..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            46778999999999999999888753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.23  E-value=0.016  Score=47.11  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -+.|.|++|+|||+|+..+++..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            37899999999999999888753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.015  Score=45.70  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |+-|+|++|+||||++..|+...
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999887653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.01  Score=45.80  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=20.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|++|||||+|+..++.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            8999999999999999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.07  E-value=0.012  Score=45.01  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=17.9

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      =+.|.|++|+||||++..+++
T Consensus         6 iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367889999999999987765

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.016  Score=45.94  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=26.0

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE  235 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rE  235 (266)
                      |.|.||+|+||||++..|+.+. .     ..|.-.|.=-|+
T Consensus         6 I~I~GppGSGKgT~ak~La~~~-g-----l~~iStGdLlR~   40 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEAL-Q-----WHLLDSGAIYRV   40 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH-T-----CEEEEHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-C-----CcEECHHHHHHH
Confidence            6899999999999999998865 1     444555644444

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.96  E-value=0.013  Score=45.33  Aligned_cols=22  Identities=41%  Similarity=0.764  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++|+|||+|+..++.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            6889999999999999988763

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.91  E-value=0.021  Score=46.59  Aligned_cols=27  Identities=22%  Similarity=0.235  Sum_probs=22.2

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -++..-+.|+||+|+|||+++..+++.
T Consensus        49 ~~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          49 SGVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             TTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            344456889999999999999988874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.02  Score=43.61  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=20.8

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +.=+.|.|++|+||||++..+++..
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4456789999999999999998753

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.88  E-value=0.014  Score=45.01  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++|+|||+|+..+..+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6889999999999999988864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.014  Score=45.03  Aligned_cols=22  Identities=32%  Similarity=0.597  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|++|+|||+|+..++.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.014  Score=45.15  Aligned_cols=22  Identities=41%  Similarity=0.635  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|||||+|+..++.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988865

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.014  Score=45.37  Aligned_cols=22  Identities=32%  Similarity=0.699  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++|||||+|+..++.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            7899999999999999988865

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.014  Score=44.92  Aligned_cols=22  Identities=32%  Similarity=0.733  Sum_probs=20.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++|||||+|+..++.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999998864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.013  Score=45.23  Aligned_cols=22  Identities=45%  Similarity=0.813  Sum_probs=20.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++|||||+|+..++.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999998875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.82  E-value=0.015  Score=44.61  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=20.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..++.+
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6889999999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.017  Score=44.59  Aligned_cols=22  Identities=32%  Similarity=0.902  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|||||+|+..++.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999988764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.76  E-value=0.019  Score=45.44  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+.|+|++|+||||++..|+..
T Consensus        10 iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999988764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.75  E-value=0.015  Score=44.86  Aligned_cols=22  Identities=32%  Similarity=0.770  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|||||+|+..++.+
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999998864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.72  E-value=0.02  Score=45.41  Aligned_cols=26  Identities=27%  Similarity=0.417  Sum_probs=22.0

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -++.-+.|+|++|+||||++..|+..
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            35667889999999999999988764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.016  Score=44.84  Aligned_cols=22  Identities=32%  Similarity=0.703  Sum_probs=20.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|||||+|+..++.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999999865

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.64  E-value=0.053  Score=45.39  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+++.|++|||||+|+..+++.
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            4889999999999999988874

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.015  Score=44.54  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=20.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..++.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999998864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.017  Score=44.93  Aligned_cols=22  Identities=41%  Similarity=0.718  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+++|||+|+.+++.+
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.59  E-value=0.018  Score=47.14  Aligned_cols=21  Identities=33%  Similarity=0.382  Sum_probs=19.2

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+.|++|+|||+|+..++..
T Consensus        35 ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          35 FLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999988774

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=93.56  E-value=0.02  Score=43.39  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=18.1

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.|-|++|+||||++..+++.
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            556699999999999988874

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.016  Score=45.23  Aligned_cols=22  Identities=41%  Similarity=0.832  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|++|||||+|+..++.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.54  E-value=0.021  Score=44.75  Aligned_cols=22  Identities=41%  Similarity=0.749  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|||||+|+..++.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6889999999999999988864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=93.54  E-value=0.019  Score=46.89  Aligned_cols=21  Identities=38%  Similarity=0.627  Sum_probs=18.7

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+.||+|+|||+++.-+++.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999988774

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.53  E-value=0.018  Score=44.53  Aligned_cols=22  Identities=36%  Similarity=0.758  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++|+|||+|+..++.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7889999999999999998865

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.02  Score=45.95  Aligned_cols=22  Identities=27%  Similarity=0.604  Sum_probs=19.5

Q ss_pred             eeeecCCCccHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +||-|++|+|||||+..+....
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.018  Score=44.62  Aligned_cols=22  Identities=41%  Similarity=0.922  Sum_probs=20.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++|+|||+|+..++.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6889999999999999998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.017  Score=44.80  Aligned_cols=22  Identities=36%  Similarity=0.824  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|++|||||+|+..++.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7999999999999999988764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.46  E-value=0.018  Score=44.55  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..++.+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            6899999999999999988875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.019  Score=45.12  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=20.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|||||+|+.+++.+
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999998875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.017  Score=44.72  Aligned_cols=22  Identities=50%  Similarity=0.741  Sum_probs=20.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..++.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999998864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=93.30  E-value=0.025  Score=43.44  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++++|||+|+..+..+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7889999999999999988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.023  Score=44.48  Aligned_cols=22  Identities=36%  Similarity=0.650  Sum_probs=19.6

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|++|+|||+|+..++++
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            6889999999999999988753

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.023  Score=43.02  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.6

Q ss_pred             CceeeeecCCCccHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |=|++|+|.+++|||||+..+..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            55899999999999999998874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.18  E-value=0.023  Score=43.39  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+..+..+
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            7899999999999999987653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.021  Score=44.01  Aligned_cols=22  Identities=32%  Similarity=0.732  Sum_probs=20.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++|||||+|+..++.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999998875

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.02  Score=45.20  Aligned_cols=22  Identities=41%  Similarity=0.616  Sum_probs=20.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|++|+|||+|+..++.+
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            7899999999999999998875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.14  E-value=0.024  Score=49.03  Aligned_cols=25  Identities=32%  Similarity=0.392  Sum_probs=21.8

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.-+++.||+|||||.|+..+++.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            4566789999999999999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.02  Score=44.55  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|++|+|||+|+..++.+
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7889999999999999988875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.022  Score=44.31  Aligned_cols=22  Identities=41%  Similarity=0.700  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++|+|||+|+..+..+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.07  E-value=0.013  Score=49.42  Aligned_cols=31  Identities=32%  Similarity=0.486  Sum_probs=26.9

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii  213 (266)
                      +|.|..+-+|+...+.|.||||||||+..|.
T Consensus        86 ~~~L~~~l~~kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          86 IEELKEYLKGKISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             HHHHHHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred             HhhHHHHhcCCeEEEECCCCCCHHHHHHhhc
Confidence            5677777789999999999999999998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.022  Score=44.18  Aligned_cols=22  Identities=36%  Similarity=0.679  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..++.+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999998864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.00  E-value=0.033  Score=43.72  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+-|.||+|+|||||+..++..
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            566788999999999999888764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.98  E-value=0.032  Score=44.55  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=26.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG  236 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv  236 (266)
                      ++.|-||+|+||||++..|+...-      ..+.-.|.=-|++
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg------~~~istGdl~R~~   41 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG------FTYLDTGAMYRAA   41 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC------CEEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC------CcEECHHHHHHHH
Confidence            467889999999999999987641      3344455444443

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.97  E-value=0.043  Score=44.97  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=24.6

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV  229 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI  229 (266)
                      +-|.|++|+|||.|++.+++... ..+..++|.-.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~-~~~~~~~~~~~   72 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK-KRGYRVIYSSA   72 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc-cCccceEEech
Confidence            57999999999999998887643 33234555443

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.96  E-value=0.024  Score=43.93  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=20.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++|+|||+|+..++.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            8999999999999999988764

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=92.95  E-value=0.041  Score=44.16  Aligned_cols=22  Identities=36%  Similarity=0.446  Sum_probs=19.3

Q ss_pred             eeeecCCCccHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +.|.|.+|+|||||+..+.++.
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Confidence            5789999999999999998753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=92.94  E-value=0.12  Score=42.42  Aligned_cols=46  Identities=30%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeec-CCchHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG-ERTREG  236 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIG-ER~rEv  236 (266)
                      .+++-+.++|++|+||||.+.-|++... .++.-+.+..+. -|.--+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g~kV~lit~Dt~R~gA~   50 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTFRAAGG   50 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCSSTTHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEEeccccccch
Confidence            3677889999999999999999988653 333333333333 344433

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=92.92  E-value=0.028  Score=43.63  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+-++|++|+||||+...++..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999998874

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.89  E-value=0.027  Score=43.19  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=22.4

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .|-=|+.++|.+|+|||+|+..+..+
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            45568999999999999999988754

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.87  E-value=0.038  Score=40.17  Aligned_cols=57  Identities=14%  Similarity=0.010  Sum_probs=34.0

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG  247 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g  247 (266)
                      +-+||+..|.++.|+|||..+...+.......+..+++  +-.+..-+.++.+.+...+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli--~~p~~~l~~q~~~~~~~~~   60 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLV--LAPTRVVLSEMKEAFHGLD   60 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEE--EESSHHHHHHHHHHTTTSC
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeee--eecchhHHHHHHHHhhhhh
Confidence            56899999999999999976644433223233222222  2245555566666665443

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.79  E-value=0.061  Score=42.03  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=19.9

Q ss_pred             eeeecCCCccHHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      +.+.|.+|+|||||+..|++...
T Consensus         5 i~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            56789999999999999998653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.027  Score=43.47  Aligned_cols=22  Identities=41%  Similarity=0.732  Sum_probs=20.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|++++|||+|+..++.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7999999999999999988774

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.71  E-value=0.031  Score=42.86  Aligned_cols=22  Identities=41%  Similarity=0.816  Sum_probs=19.6

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..++.+
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6889999999999999988753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.032  Score=43.10  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            7899999999999999987653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.60  E-value=0.034  Score=42.94  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+-+.|.+|+||||+...++..
T Consensus         3 ~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5678899999999999988765

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=92.53  E-value=0.033  Score=43.11  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .|-|+|.+|+||||+...++...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999888753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.39  E-value=0.042  Score=42.40  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|..|||||+|+.++..+
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            7899999999999999998764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.032  Score=44.00  Aligned_cols=23  Identities=30%  Similarity=0.605  Sum_probs=20.6

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -|+.++|++|+|||+|+..++.+
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            48999999999999999988765

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=92.33  E-value=0.1  Score=42.86  Aligned_cols=24  Identities=29%  Similarity=0.163  Sum_probs=20.6

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHh
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAK  218 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~  218 (266)
                      +.+.|++|+||||.+.-|+....+
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~~~~   36 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALYYKG   36 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            567899999999999999987654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.034  Score=43.29  Aligned_cols=22  Identities=36%  Similarity=0.751  Sum_probs=19.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6889999999999999988764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.25  E-value=0.03  Score=44.42  Aligned_cols=22  Identities=36%  Similarity=0.767  Sum_probs=20.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.|+|.+|+|||+|+.++..+
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            6889999999999999998864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.24  E-value=0.018  Score=48.66  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=27.6

Q ss_pred             eecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544        183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +|.|...-+|++..+.|.||+|||||+..+.-
T Consensus        88 l~~L~~~l~~~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          88 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             HHHHHHhhccceEEEECCCCccHHHHHHhhcc
Confidence            56777777999999999999999999977654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.21  E-value=0.032  Score=43.86  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..++.+
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988875

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.21  E-value=0.04  Score=45.78  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=17.4

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -+.|+|+||+|||+.+..-+..
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~   37 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAH   37 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHH
Confidence            3689999999999988665443

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.18  E-value=0.081  Score=40.22  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=18.2

Q ss_pred             eeecCCCccHHHHHHHHHHHHH
Q psy17544        196 GLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       196 gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      .|-|.+|+||||++..|+....
T Consensus         5 vi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           5 IVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
Confidence            3459999999999999987653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.16  E-value=0.035  Score=42.99  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=20.5

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -|+.++|++|+|||+|+..++.+
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47889999999999999988764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.14  E-value=0.035  Score=45.07  Aligned_cols=21  Identities=38%  Similarity=0.594  Sum_probs=17.7

Q ss_pred             eeecCCCccHHHHHHHHHHHH
Q psy17544        196 GLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       196 gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .|.|++|+|||+++..+++..
T Consensus        50 ~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHHHH
Confidence            455999999999999888754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=92.13  E-value=0.036  Score=42.66  Aligned_cols=22  Identities=36%  Similarity=0.533  Sum_probs=19.3

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|+|||+|+..+..+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999887653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.12  E-value=0.023  Score=44.10  Aligned_cols=23  Identities=35%  Similarity=0.677  Sum_probs=9.6

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |+.++|.+|+|||+|+..++.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~~   30 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSEDA   30 (173)
T ss_dssp             EEEEECCCCC-------------
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            79999999999999999888653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.10  E-value=0.042  Score=42.65  Aligned_cols=21  Identities=33%  Similarity=0.681  Sum_probs=19.2

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |++|+|.+++|||||+..+..
T Consensus        10 kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            899999999999999988764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.08  E-value=0.04  Score=43.92  Aligned_cols=21  Identities=33%  Similarity=0.608  Sum_probs=18.5

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |-|.||+|+|||||+..++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999988774

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.99  E-value=0.036  Score=44.98  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=20.4

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      .+.|.|++|+|||+++..+++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            47899999999999999998863

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.99  E-value=0.042  Score=43.50  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=18.3

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +-|.||+|+|||||+..++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999988763

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.93  E-value=0.047  Score=42.29  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+|||||+|+..+..+
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7889999999999999998765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.036  Score=43.78  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=20.2

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++|+|||+|+..++.+
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.83  E-value=0.043  Score=42.78  Aligned_cols=20  Identities=30%  Similarity=0.524  Sum_probs=18.5

Q ss_pred             eeeeecCCCccHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii  213 (266)
                      |+.|.|.+|+|||+|+..+-
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            78999999999999999883

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.75  E-value=0.043  Score=42.28  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=19.0

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .++|+|.+++|||||+..|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999988874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.70  E-value=0.05  Score=43.67  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=19.7

Q ss_pred             eeeecCCCccHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +.|.|++|+|||+|+..+++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999888753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.69  E-value=0.049  Score=42.25  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=19.0

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |+.++|.+|+|||+|+..+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            789999999999999988764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.023  Score=44.18  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=18.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|++|+|||+|+..++.+
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988765

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=91.61  E-value=0.12  Score=43.66  Aligned_cols=47  Identities=23%  Similarity=0.446  Sum_probs=30.7

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe-------ecCCchHHHHHHHHhH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-------VGERTREGNDLYHEMI  244 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al-------IGER~rEv~ef~~~l~  244 (266)
                      +++.||+|+|||+|+..+++.. ..+  ++.+-.       +||-...+++.++..+
T Consensus        48 iLL~GppGtGKT~la~~iA~~~-~~~--~~~i~~~~l~~~~~g~~~~~l~~~f~~A~  101 (256)
T d1lv7a_          48 VLMVGPPGTGKTLLAKAIAGEA-KVP--FFTISGSDFVEMFVGVGASRVRDMFEQAK  101 (256)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH-TCC--EEEECSCSSTTSCCCCCHHHHHHHHHHHH
T ss_pred             EEeeCCCCCCccHHHHHHHHHc-CCC--EEEEEhHHhhhcchhHHHHHHHHHHHHHH
Confidence            7899999999999999898743 332  222221       3555555666665544

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.59  E-value=0.075  Score=46.76  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=23.9

Q ss_pred             eeeeecCCCccHHHHHHHHHHHHHhcCCcEEEE
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF  226 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~  226 (266)
                      -+.|+|++|+|||+++..++.+..+....++|+
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iii   84 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV   84 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            388999999999999988887654332224444

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=91.55  E-value=0.29  Score=40.27  Aligned_cols=51  Identities=20%  Similarity=0.044  Sum_probs=33.1

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY  240 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~  240 (266)
                      .+-.-+.++|++|+||||.+.-|+....+....+.++..=-.|..-+..+.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~   59 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLK   59 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHH
Confidence            344567889999999999999998765433222444444445555554443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=91.26  E-value=0.27  Score=40.40  Aligned_cols=47  Identities=21%  Similarity=0.078  Sum_probs=25.9

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDL  239 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef  239 (266)
                      ..-+.++|++|+||||.+.-|+.... ..+. +.++..==.|...+..+
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~-~~g~kV~lit~Dt~R~ga~eQL   59 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYK-KKGFKVGLVGADVYRPAALEQL   59 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHH-HTTCCEEEEECCCSSHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEEeeccccchhHHH
Confidence            34477889999999999999987654 3333 43333323455554443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.26  E-value=0.058  Score=41.43  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=19.0

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++|+|.+++|||||+..+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999998864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.17  E-value=0.039  Score=42.94  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=18.4

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++|+|.+++|||||+..+.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999987753

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.2  Score=41.25  Aligned_cols=43  Identities=28%  Similarity=0.251  Sum_probs=28.5

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN  237 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~  237 (266)
                      +.++|++|+||||.+.-|++...+....+.++..=--|..-+.
T Consensus        12 i~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~e   54 (211)
T d2qy9a2          12 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE   54 (211)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchh
Confidence            6789999999999999998765433222555555444554333

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.06  E-value=0.066  Score=41.97  Aligned_cols=22  Identities=32%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++.|+|.+++|||||+..+..+
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999988754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.03  E-value=0.056  Score=42.46  Aligned_cols=21  Identities=48%  Similarity=0.699  Sum_probs=19.2

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++|+|.+|+|||||+..+..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            699999999999999988863

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.91  E-value=0.063  Score=43.27  Aligned_cols=53  Identities=15%  Similarity=0.209  Sum_probs=30.9

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcC--CcEEEEEeecCCchH-HHHHHHHhHhcC
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAH--GGYSVFAGVGERTRE-GNDLYHEMIESG  247 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~--~~v~V~alIGER~rE-v~ef~~~l~~~g  247 (266)
                      +.+.|++|+|||+++..+++.....+  .++..+-...+|+.. ..+.+..+.+..
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~~~~~   94 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKK   94 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBC
T ss_pred             EEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCceehhhHHHHHHHhh
Confidence            78999999999999988876532111  014444444555433 333344444443

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.88  E-value=0.064  Score=45.27  Aligned_cols=21  Identities=33%  Similarity=0.640  Sum_probs=19.4

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+.|++|+|||+|+..++..
T Consensus        44 iLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          44 VLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             EEEBCCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcchhHHHHHHHH
Confidence            889999999999999988874

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=90.84  E-value=0.059  Score=43.93  Aligned_cols=44  Identities=25%  Similarity=0.349  Sum_probs=30.8

Q ss_pred             ccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCch
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR  234 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~r  234 (266)
                      -+|.-+-|.|-||+|||||+..+.+...+.. .+.++.+-|..-|
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~iR   65 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDNIR   65 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchHHH
Confidence            3677799999999999999999886543221 2456666664433

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.72  E-value=0.076  Score=43.16  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .|+.+.|.+|+|||+|+.++..+
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999998655

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=90.70  E-value=0.065  Score=44.96  Aligned_cols=21  Identities=38%  Similarity=0.512  Sum_probs=19.0

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+.|++|+|||+|+..+++.
T Consensus        45 iLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCCChhHHHHHHHHH
Confidence            789999999999999988863

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.07  Score=42.30  Aligned_cols=20  Identities=35%  Similarity=0.597  Sum_probs=17.9

Q ss_pred             eeeecCCCccHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +-|+||||+|||||+..++.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56899999999999998875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.59  E-value=0.067  Score=44.82  Aligned_cols=21  Identities=38%  Similarity=0.646  Sum_probs=18.9

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +.+.||+|+|||+|+..+++.
T Consensus        41 iLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEecCCCCCchHHHHHHHHH
Confidence            889999999999999888764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.59  E-value=0.069  Score=42.86  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -+.+.|++|+|||+++..+++.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            3789999999999999988875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.49  E-value=0.042  Score=42.46  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=19.7

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+.++|.+++|||+|+..++.+
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999988654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.37  E-value=0.063  Score=41.09  Aligned_cols=20  Identities=35%  Similarity=0.690  Sum_probs=18.5

Q ss_pred             eeeecCCCccHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ++|+|.+++|||||+..+.+
T Consensus         8 I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=90.34  E-value=0.047  Score=41.62  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             cCceeeeecCCCccHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii  213 (266)
                      +.-|++|+|.+++|||+|+..|.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHh
Confidence            45679999999999999997664

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.27  E-value=0.054  Score=42.00  Aligned_cols=20  Identities=30%  Similarity=0.602  Sum_probs=18.0

Q ss_pred             eeeecCCCccHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ++|+|.+++|||||+..+..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            79999999999999988754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=90.08  E-value=0.045  Score=42.55  Aligned_cols=32  Identities=31%  Similarity=0.321  Sum_probs=25.4

Q ss_pred             ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +-|+.--|-=|+.++|.+|+|||+|+..+..+
T Consensus         9 ~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_           9 DKLWGSNKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             GGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             HHHhCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            34555666678999999999999999887543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.07  E-value=0.09  Score=41.59  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.6

Q ss_pred             eeeeecCCCccHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .+.|+|.+++|||+|+..+..+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.03  E-value=0.035  Score=41.90  Aligned_cols=21  Identities=33%  Similarity=0.656  Sum_probs=19.3

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |++++|.+++|||+|+..+..
T Consensus         2 kI~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            789999999999999998865

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.12  Score=42.39  Aligned_cols=25  Identities=32%  Similarity=0.518  Sum_probs=21.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHHHHh
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNVAK  218 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~a~  218 (266)
                      -..++|++|||||+|+..+++...+
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHHh
Confidence            4678999999999999999987764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.57  E-value=0.098  Score=40.42  Aligned_cols=21  Identities=29%  Similarity=0.585  Sum_probs=19.2

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .++|+|.+|+|||+|+..+..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999988875

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=89.45  E-value=0.089  Score=42.10  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=22.1

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      -|+-+.|.|++|+|||+|+..++.+
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            5778999999999999999888874

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=89.08  E-value=0.13  Score=41.76  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=19.9

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |.=+-|.||||+|||||+..++..
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            444678899999999999988764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.94  E-value=0.11  Score=43.71  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=20.7

Q ss_pred             CceeeeecCCCccHHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ..-++|.|.+|+|||||+..+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            346789999999999999988764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=88.66  E-value=0.12  Score=43.33  Aligned_cols=21  Identities=38%  Similarity=0.642  Sum_probs=17.2

Q ss_pred             ceeeeecCCCccHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii  213 (266)
                      ..+.|.|++|+|||+.+..-+
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri   45 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRI   45 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHH
Confidence            358899999999998886644

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.55  E-value=0.19  Score=42.95  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=23.3

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAK  218 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~  218 (266)
                      +-.-+.++|++|||||+|+..+++...+
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHHh
Confidence            3356789999999999999999987654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=88.36  E-value=0.11  Score=40.66  Aligned_cols=18  Identities=39%  Similarity=0.663  Sum_probs=16.0

Q ss_pred             eeeecCCCccHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMEL  212 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~i  212 (266)
                      +||-|++|+||||++..+
T Consensus         6 IgitG~~gSGKstva~~l   23 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALL   23 (191)
T ss_dssp             EEEEECTTSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            689999999999998755

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.29  E-value=0.12  Score=40.60  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=18.1

Q ss_pred             ceeeeecCCCccHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +=+.+.|.+|+||||++..+..
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3466899999999999987754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=87.58  E-value=0.15  Score=41.16  Aligned_cols=25  Identities=36%  Similarity=0.547  Sum_probs=21.7

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .|.=+.|.|++|+|||+|+..++.+
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            5677899999999999999988763

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=87.53  E-value=0.17  Score=40.63  Aligned_cols=25  Identities=32%  Similarity=0.506  Sum_probs=21.4

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .|.=+.|.|+||+|||+|+..++..
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            4566899999999999999988764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=87.39  E-value=0.14  Score=40.86  Aligned_cols=18  Identities=44%  Similarity=0.756  Sum_probs=16.1

Q ss_pred             eeeecCCCccHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMEL  212 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~i  212 (266)
                      +||.|+.|+||||++..+
T Consensus         5 IgITG~igSGKStv~~~l   22 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEECSTTSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            799999999999998754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=86.38  E-value=0.8  Score=35.98  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.7

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ||.=|-|-|.-|+||||++..+....
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            57778889999999999999998765

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=86.13  E-value=0.13  Score=44.85  Aligned_cols=25  Identities=32%  Similarity=0.553  Sum_probs=21.3

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .++.+.|.|+.|+|||||+..++..
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred             hCCCEEEEeeccccchHHHHHHhhh
Confidence            3566899999999999999888764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=85.94  E-value=0.19  Score=45.72  Aligned_cols=50  Identities=28%  Similarity=0.345  Sum_probs=30.5

Q ss_pred             ceeeeecCCCccHHHHHHHHHHHHHhcCCcEE----EEEeecCCchHHHHHHHHhH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYS----VFAGVGERTREGNDLYHEMI  244 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~----V~alIGER~rEv~ef~~~l~  244 (266)
                      .-++++||+|||||-|+..+++- ... +-+.    -|--+|=-|+.|...+++|.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~-l~V-PFv~~daT~fTeaGYvG~DVesii~~L~  103 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKL-ANA-PFIKVEATKFTEVGYVGKEVDSIIRDLT  103 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH-TTC-CEEEEEGGGGC----CCCCTHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHHH-hCC-CEEEeecceeeecceeecchhHHHHHHH
Confidence            47899999999999999988873 322 1111    12224555566666666664

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.86  E-value=0.21  Score=43.10  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=19.0

Q ss_pred             eeeecCCCccHHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVA  217 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a  217 (266)
                      +||-|++|+|||||...|.....
T Consensus        30 IGi~G~qGSGKSTl~~~l~~~L~   52 (286)
T d1odfa_          30 IFFSGPQGSGKSFTSIQIYNHLM   52 (286)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHHH
Confidence            57889999999999988876543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=85.59  E-value=0.25  Score=43.72  Aligned_cols=27  Identities=26%  Similarity=0.174  Sum_probs=23.4

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      .-++--+.+.||+|+|||+++..+++.
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHH
Confidence            346668999999999999999999875

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=85.53  E-value=0.21  Score=44.19  Aligned_cols=21  Identities=38%  Similarity=0.572  Sum_probs=19.2

Q ss_pred             eeeecCCCccHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      ++++||+|||||.|+..|++.
T Consensus        71 iLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             eeeeCCCCccHHHHHHHHHhh
Confidence            788999999999999999874

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.44  E-value=0.23  Score=42.89  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=16.2

Q ss_pred             eeeecCCCccHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +||-|++|+||||++..+....
T Consensus         7 IgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             EEEESCC---CCTHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            7899999999999998876644

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=85.35  E-value=0.21  Score=43.49  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=18.8

Q ss_pred             eeeecCCCccHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      +||-|++|+||||++..|..-.
T Consensus        83 IGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          83 ISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCcHHHHHHHHHH
Confidence            6799999999999998877643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=85.26  E-value=0.25  Score=39.74  Aligned_cols=21  Identities=24%  Similarity=0.094  Sum_probs=18.5

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      .+||-|+.|+||||++..+..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=85.05  E-value=0.15  Score=43.58  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=19.8

Q ss_pred             CceeeeecCCCccHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      |.-+.|.|++|+|||+|+..++.
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHH
T ss_pred             CCeEEEECCCCccHHHHHHHHHH
Confidence            45689999999999999987764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.91  E-value=0.13  Score=40.06  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.6

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      -|.|-|+.|+||||++..|.+
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988765

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.22  E-value=0.54  Score=36.38  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=24.3

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  227 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a  227 (266)
                      +++...+.+|.|+|||.+...++.......+..++|.
T Consensus        22 ~~~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i   58 (200)
T d1wp9a1          22 KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLML   58 (200)
T ss_dssp             GGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred             hcCCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence            4567789999999999877666654433333334443

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.91  E-value=1.3  Score=35.29  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             ceeeeecCCCccHHHHHHHHHHH
Q psy17544        193 GKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       193 Qr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      +-+.+-|++|+|||+++..+++.
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Confidence            34788999999999999988874

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=83.78  E-value=0.39  Score=42.23  Aligned_cols=47  Identities=19%  Similarity=0.269  Sum_probs=28.9

Q ss_pred             CceeeeecCCCccHHHHHHHHHHHHHhc---CC-cEEEEEeecCCchHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELINNVAKA---HG-GYSVFAGVGERTREGND  238 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~---~~-~v~V~alIGER~rEv~e  238 (266)
                      +.-..|.||+|+|||+++..+++...+.   .+ .+.+.|-.|.-..++.|
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e  213 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE  213 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHH
Confidence            3456789999999999987766543221   11 25555556644444444

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=83.72  E-value=0.3  Score=37.89  Aligned_cols=21  Identities=38%  Similarity=0.604  Sum_probs=18.9

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      +++|+|.+.+|||||+..+..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999998863

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.69  E-value=1.5  Score=34.81  Aligned_cols=58  Identities=17%  Similarity=0.018  Sum_probs=40.7

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHh---cCCcEEEEEeecCC--chHHHHHHHHhHhcCc
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAK---AHGGYSVFAGVGER--TREGNDLYHEMIESGV  248 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~---~~~~v~V~alIGER--~rEv~ef~~~l~~~gv  248 (266)
                      .+..+.+-|++|+|||+++..+++...+   .|+|+..+..-|..  -.+++++.+.+..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~i~~~~~~~~~   76 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPE   76 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHHHHHHHHHhhCcc
Confidence            5678899999999999999998875432   25567766654432  3677777766655443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.40  E-value=0.69  Score=35.90  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=19.3

Q ss_pred             eeeecCCCccHHHHHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      |.|.|.-|+||||++..+....
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5688999999999999888755

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=83.09  E-value=0.3  Score=39.00  Aligned_cols=18  Identities=33%  Similarity=0.658  Sum_probs=16.0

Q ss_pred             eeeecCCCccHHHHHHHH
Q psy17544        195 IGLFGGAGVGKTVLIMEL  212 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~i  212 (266)
                      +||-|+.|+||||++..+
T Consensus         6 IgitG~igSGKStv~~~l   23 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAF   23 (208)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             EEEECCCcCCHHHHHHHH
Confidence            789999999999999754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=82.14  E-value=0.37  Score=41.43  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=19.8

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -+.+.||+|+|||.|+..+++..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhhc
Confidence            36788999999999999998853

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.12  E-value=0.19  Score=40.09  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINN  215 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~  215 (266)
                      |+=.|.|-|+.|+||||++..|+..
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3457889999999999999988764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.57  E-value=0.38  Score=39.95  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=19.2

Q ss_pred             eeeeecCCCccHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~  214 (266)
                      ++.|+|-+|+|||+|+..|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            699999999999999988765

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.53  E-value=1.5  Score=34.82  Aligned_cols=53  Identities=23%  Similarity=0.232  Sum_probs=31.1

Q ss_pred             cCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhH
Q psy17544        191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI  244 (266)
Q Consensus       191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~  244 (266)
                      ||==|.|-|+-|+||||++..+........-.++++--- .++.+..++++++-
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p-~~~~~~~~~i~~~l   54 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP-ERSTEIGKLLSSYL   54 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS-CTTSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC-CCCcccchhhhhhh
Confidence            443455669999999999998887653322113222212 13445666666653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=81.42  E-value=0.43  Score=42.55  Aligned_cols=25  Identities=36%  Similarity=0.558  Sum_probs=20.6

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhc
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKA  219 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~  219 (266)
                      ..++|++|||||.|+..+++...+.
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i~~~   70 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRIVKG   70 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CeEECCCCCCHHHHHHHHHHHHHhC
Confidence            5588999999999998888766543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=81.40  E-value=0.36  Score=35.44  Aligned_cols=23  Identities=17%  Similarity=0.098  Sum_probs=18.0

Q ss_pred             CceeeeecCCCccHHHHHHHHHH
Q psy17544        192 GGKIGLFGGAGVGKTVLIMELIN  214 (266)
Q Consensus       192 GQr~gIfgg~G~GKT~L~~~ii~  214 (266)
                      -|+..|.++.|+|||+++..++.
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH
Confidence            46677899999999998765544

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=81.30  E-value=1.1  Score=38.88  Aligned_cols=53  Identities=17%  Similarity=0.098  Sum_probs=32.7

Q ss_pred             eeeecCCCccHHHHHHHHHHHHHhcCCcEEEE------EeecCCchHHHHHHHHhHhcC
Q psy17544        195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVF------AGVGERTREGNDLYHEMIESG  247 (266)
Q Consensus       195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~------alIGER~rEv~ef~~~l~~~g  247 (266)
                      +.+.|++|||||.|+..++.......+-+.+=      -.+|+--+.++++.++..+..
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~~  184 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR  184 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhcc
Confidence            44569999999999998887532111111111      124566667777777766543

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.14  E-value=0.44  Score=37.46  Aligned_cols=22  Identities=27%  Similarity=0.208  Sum_probs=18.3

Q ss_pred             ccCceeeeecCCCccHHHHHHH
Q psy17544        190 AKGGKIGLFGGAGVGKTVLIME  211 (266)
Q Consensus       190 gkGQr~gIfgg~G~GKT~L~~~  211 (266)
                      -.|+.+.+.++.|+|||+....
T Consensus        38 ~~~~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          38 FSGKNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             TTCSCEEEECSSHHHHHHHHHH
T ss_pred             HcCCCEEEEcCCCCchhHHHHH
Confidence            3588999999999999987643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=81.01  E-value=0.58  Score=36.80  Aligned_cols=28  Identities=29%  Similarity=0.372  Sum_probs=24.5

Q ss_pred             cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544        189 YAKGGKIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       189 igkGQr~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      ..+|--+.+-|+=|+||||+...++++.
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            3567789999999999999999999875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=81.01  E-value=0.18  Score=37.79  Aligned_cols=20  Identities=30%  Similarity=0.572  Sum_probs=16.4

Q ss_pred             eeeeecCCCccHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELI  213 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii  213 (266)
                      -..|+|+.|+|||+|+..|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            34578999999999997664

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=80.07  E-value=0.5  Score=38.31  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=19.0

Q ss_pred             eeeeecCCCccHHHHHHHHHHHH
Q psy17544        194 KIGLFGGAGVGKTVLIMELINNV  216 (266)
Q Consensus       194 r~gIfgg~G~GKT~L~~~ii~~~  216 (266)
                      -+.|.|++|+|||+++..+++..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            36788999999999998877643