Psyllid ID: psy1755

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MSLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLRRQAAHSDFNIKPIV
Secondary Structure (PSIPRED)
ccEEccHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcc
Coil and Loop (DISEMBL)
msllgsgrsffmtgyLPVGFELAaeltypepegtssgllnaSAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLltliippdlrrqaahsdfnikpiv
Flexible Loop (DISEMBL)
msllgsgrsfFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDlrrqaahsdfnikpiv
Low Complexity Region (SEG)
MSLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIalclalvlgtlltliippdlRRQAAHSDFNIKPIV
Disordered region (IsUnstruct)
********SFFMTGYLPVGFELAAELTYPE****SSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDL***************
Disordered Region (DISOPRED)
MSLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLRRQAAHS****K*IV
Disordered Region (DISEMBL)
MSLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLRRQAAHSDFNIKPIV
Disordered Region (DISPRO)
MSLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLRRQAAHSDFNIKPIV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLRRQAAHSDFNIKPIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
P60815	546	Feline leukemia virus sub	yes	N/A	0.844	0.159	0.632	1e-25
Q91X85	551	Feline leukemia virus sub	yes	N/A	0.844	0.157	0.620	2e-24
Q9UPI3	526	Feline leukemia virus sub	no	N/A	0.844	0.165	0.620	6e-24
O01735	586	Uncharacterized MFS-type	no	N/A	0.834	0.146	0.604	1e-23
Q9N1F2	560	Feline leukemia virus sub	N/A	N/A	0.902	0.166	0.561	2e-23
Q9Y5Y0	555	Feline leukemia virus sub	no	N/A	0.902	0.167	0.552	3e-23
Q9ES43	560	Feline leukemia virus sub	N/A	N/A	0.834	0.153	0.528	1e-18
Q28FF3	482	Major facilitator superfa	no	N/A	0.446	0.095	0.434	0.0006

>sp|P60815|FLVC2_RAT Feline leukemia virus subgroup C receptor-related protein 2 OS=Rattus norvegicus GN=Flvcr2 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 10  FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIA 69
           FFMTGYLP+GFE A ELTYPE EG SSGLLN SAQVFGI+FT+  GQ+   +G +  NI 
Sbjct: 430 FFMTGYLPLGFEFAVELTYPESEGVSSGLLNVSAQVFGIIFTISQGQIIDNYGSVPGNIF 489

Query: 70  LCLALVLGTLLTLIIPPDLRRQAAHSD 96
           LC+ L LG+ LT  I  DLRRQ A+ D
Sbjct: 490 LCVFLALGSALTAFIKSDLRRQRANKD 516

Acts as an importer of heme. Also acts as a transporter for a calcium-chelator complex, important for growth and calcium metabolism.
Rattus norvegicus (taxid: 10116)

>sp|Q91X85|FLVC2_MOUSE Feline leukemia virus subgroup C receptor-related protein 2 OS=Mus musculus GN=Flvcr2 PE=1 SV=2

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 62/87 (71%)

Query: 10  FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIA 69
           FFMTGYLP+GFE A E TYPE EG SSGLLN SAQVFGI+FT+  GQ+    G +  NI 
Sbjct: 436 FFMTGYLPLGFEFAVEFTYPESEGVSSGLLNVSAQVFGIVFTISQGQIIDNHGTMFGNIF 495

Query: 70  LCLALVLGTLLTLIIPPDLRRQAAHSD 96
           LC+ L LG+ LT  I  DLRRQ A+ D
Sbjct: 496 LCVFLALGSALTAFIKSDLRRQRANKD 522

Acts as an importer of heme. Also acts as a transporter for a calcium-chelator complex, important for growth and calcium metabolism.

Mus musculus (taxid: 10090)

>sp|Q9UPI3|FLVC2_HUMAN Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 62/87 (71%)

Query: 10  FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIA 69
           FFMTGYLP+GFE A ELTYPE EG SSGLLN SAQVFGI+FT+  GQ+   +G    NI 
Sbjct: 413 FFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIF 472

Query: 70  LCLALVLGTLLTLIIPPDLRRQAAHSD 96
           LC+ L LG  LT  I  DLRRQ A+ +
Sbjct: 473 LCVFLTLGAALTAFIKADLRRQKANKE 499

Acts as an importer of heme. Also acts as a transporter for a calcium-chelator complex, important for growth and calcium metabolism.

Homo sapiens (taxid: 9606)

>sp|O01735|YC91_CAEEL Uncharacterized MFS-type transporter C09D4.1 OS=Caenorhabditis elegans GN=C09D4.1 PE=3 SV=2

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 63/86 (73%)

Query: 10  FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIA 69
           FFMTGYLP+GFE AAE+TYP  EGT+SGLLNASAQ+FGI  T + G +   FG   +NI 
Sbjct: 478 FFMTGYLPIGFEFAAEITYPAAEGTTSGLLNASAQIFGIALTWLMGIVMHGFGTFTSNII 537

Query: 70  LCLALVLGTLLTLIIPPDLRRQAAHS 95
           +   LV+GT+LT  I  DL+RQ AHS
Sbjct: 538 MSSCLVVGTILTCFIREDLKRQKAHS 563

Caenorhabditis elegans (taxid: 6239)

>sp|Q9N1F2|FLVC1_FELCA Feline leukemia virus subgroup C receptor-related protein 1 OS=Felis catus GN=FLVCR1 PE=1 SV=1

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 67/98 (68%), Gaps = 5/98 (5%)

Query: 10  FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIA 69
           FFMTGYLP+GFE A E+TYPE EGTSSGLLNA+AQ+FGILFT+  G+L T +     NI 
Sbjct: 437 FFMTGYLPLGFEFAVEITYPESEGTSSGLLNAAAQIFGILFTLAQGKLTTDYSPKAGNIF 496

Query: 70  LCLALVLGTLLTLIIPPDLRRQA-----AHSDFNIKPI 102
           LC+ L LG +LT +I  DLRR       A+ D    P+
Sbjct: 497 LCVWLFLGIILTALIKSDLRRHNINIGIANGDIKAVPV 534

Heme transporter that exports cytoplasmic heme; heme export depends on the presence of hemopexin (By similarity). May be required to protect developing erythroid cells from heme toxicity. It can also export coproporphyrin and protoporphyrin IX, which are both intermediate products in the heme biosynthetic pathway (By similarity). Does not export bilirubin (By similarity). Confers susceptibility to Feline leukemia virus subgroup C (FeLV-C) infection, which is associated with fatal erythroid aplasia, also known as aplastic anemia.

Felis catus (taxid: 9685)

>sp|Q9Y5Y0|FLVC1_HUMAN Feline leukemia virus subgroup C receptor-related protein 1 OS=Homo sapiens GN=FLVCR1 PE=1 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 3/96 (3%)

Query: 10  FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIA 69
           FFMTGYLP+GFE A E+TYPE EGTSSGLLNASAQ+FGILFT+  G+L + +G    NI 
Sbjct: 437 FFMTGYLPLGFEFAVEITYPESEGTSSGLLNASAQIFGILFTLAQGKLTSDYGPKAGNIF 496

Query: 70  LCLALVLGTLLTLIIPPDLRRQAAH---SDFNIKPI 102
           LC+ + +G +LT +I  DLRR   +   ++ ++K I
Sbjct: 497 LCVWMFIGIILTALIKSDLRRHNINIGITNVDVKAI 532

Heme transporter that exports cytoplasmic heme. It can also export coproporphyrin and protoporphyrin IX, which are both intermediate products in the heme biosynthetic pathway. Does not export bilirubin. Heme export depends on the presence of HPX and may be required to protect developing erythroid cells from heme toxicity. Heme export also provides protection from heme or ferrous iron toxicities in liver and brain. Causes susceptibility to FeLV-C in vitro.

Homo sapiens (taxid: 9606)

>sp|Q9ES43|FLVC1_MUSDU Feline leukemia virus subgroup C receptor-related protein 1 OS=Mus dunni GN=Flvcr1 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 60/87 (68%), Gaps = 1/87 (1%)

Query: 10  FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVA-NI 68
           FFMTGYLP+GFE A E+TYPE EG SSGLLN +AQ+ GI FT+  G++ T +    A NI
Sbjct: 442 FFMTGYLPLGFEFAVEITYPESEGMSSGLLNTAAQILGIFFTLAQGKITTDYNSPEAGNI 501

Query: 69  ALCLALVLGTLLTLIIPPDLRRQAAHS 95
            LC  + +G +LT +I  DLRR   ++
Sbjct: 502 FLCAWMFVGIILTALIKSDLRRHNINT 528

Heme transporter that exports cytoplasmic heme; heme export depends on the presence of hemopexin (By similarity). May be required to protect developing erythroid cells from heme toxicity. It can also export coproporphyrin and protoporphyrin IX, which are both intermediate products in the heme biosynthetic pathway (By similarity). Does not export bilirubin (By similarity). Overexpression in tail fibroblasts causes susceptibility to subgroup C feline leukemia viruses (FeLV-C).

Mus dunni (taxid: 254704)

>sp|Q28FF3|MFS7A_XENTR Major facilitator superfamily domain-containing protein 7-a OS=Xenopus tropicalis GN=mfsd7-A PE=2 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 17  PVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG 62
           PVG ELA E +YP  EG+S+GL   S Q+ GI++ +++ +L   F 
Sbjct: 373 PVGMELAVECSYPVGEGSSTGLAFISGQIQGIIYMILFQKLTRPFA 418

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
350418906	450	PREDICTED: feline leukemia virus subgrou	0.825	0.188	0.729	5e-28
350418909	452	PREDICTED: feline leukemia virus subgrou	0.825	0.188	0.729	7e-28
380025042	460	PREDICTED: uncharacterized MFS-type tran	0.796	0.178	0.707	1e-27
328781662	459	PREDICTED: uncharacterized MFS-type tran	0.844	0.189	0.678	1e-27
340713946	450	PREDICTED: uncharacterized MFS-type tran	0.825	0.188	0.705	2e-27
194863762	481	GG10727 [Drosophila erecta] gi|190662468	0.864	0.185	0.677	2e-27
195474438	482	GE23783 [Drosophila yakuba] gi|194175599	0.864	0.184	0.677	2e-27
19921750	482	CG1358, isoform A [Drosophila melanogast	0.864	0.184	0.677	2e-27
195332175	482	GM20774 [Drosophila sechellia] gi|194124	0.864	0.184	0.677	2e-27
195581272	482	GD10235 [Drosophila simulans] gi|1941924	0.864	0.184	0.677	2e-27

>gi|350418906|ref|XP_003492007.1| PREDICTED: feline leukemia virus subgroup C receptor-related protein 2-like isoform 1 [Bombus impatiens]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 68/85 (80%)

Query: 10  FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIA 69
           FFMTGYLPVGFE AAELTYPEPEGTS+GLLNA  QVFGI+FT++YG     +GD  ANI 
Sbjct: 365 FFMTGYLPVGFEFAAELTYPEPEGTSTGLLNAVCQVFGIVFTILYGYSLNEWGDFWANIF 424

Query: 70  LCLALVLGTLLTLIIPPDLRRQAAH 94
           LC  L LGTLLT+IIP DLRRQ A 
Sbjct: 425 LCGTLALGTLLTIIIPNDLRRQKAK 449

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418909|ref|XP_003492008.1| PREDICTED: feline leukemia virus subgroup C receptor-related protein 2-like isoform 2 [Bombus impatiens]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 68/85 (80%)

Query: 10  FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIA 69
           FFMTGYLPVGFE AAELTYPEPEGTS+GLLNA  QVFGI+FT++YG     +GD  ANI 
Sbjct: 367 FFMTGYLPVGFEFAAELTYPEPEGTSTGLLNAVCQVFGIVFTILYGYSLNEWGDFWANIF 426

Query: 70  LCLALVLGTLLTLIIPPDLRRQAAH 94
           LC  L LGTLLT+IIP DLRRQ A 
Sbjct: 427 LCGTLALGTLLTIIIPNDLRRQKAK 451

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025042|ref|XP_003696290.1| PREDICTED: uncharacterized MFS-type transporter C09D4.1-like [Apis florea]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 67/82 (81%)

Query: 10  FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIA 69
           FFMTGYLPVGFE AAELTYP+ EGTS+GLLNA  QVFGI+FT++YG     +GD  ANI 
Sbjct: 369 FFMTGYLPVGFEFAAELTYPQSEGTSAGLLNAMCQVFGIIFTIIYGYCLNVWGDFWANIF 428

Query: 70  LCLALVLGTLLTLIIPPDLRRQ 91
           LC+AL LG+ LT+IIP DLRRQ
Sbjct: 429 LCIALALGSFLTIIIPNDLRRQ 450

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781662|ref|XP_392360.3| PREDICTED: uncharacterized MFS-type transporter C09D4.1-like isoform 1 [Apis mellifera]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/87 (67%), Positives = 68/87 (78%)

Query: 10  FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIA 69
           FFMTGYLPVGFE AAELTYPEPEGTS+GLLNA  QVFGI+FT +YG     +GD  AN+ 
Sbjct: 368 FFMTGYLPVGFEFAAELTYPEPEGTSAGLLNAMCQVFGIIFTTMYGYFLHIWGDFWANLF 427

Query: 70  LCLALVLGTLLTLIIPPDLRRQAAHSD 96
           LC+AL LG+ LT+IIP DLRRQ    +
Sbjct: 428 LCIALALGSFLTIIIPNDLRRQKVLKN 454

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713946|ref|XP_003395494.1| PREDICTED: uncharacterized MFS-type transporter C09D4.1-like [Bombus terrestris]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 66/85 (77%)

Query: 10  FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIA 69
           FFMTGYLPVGFE AAELTYPEPEGTS+GLLNA  Q+FGI+FT+ YG     +GD  ANI 
Sbjct: 365 FFMTGYLPVGFEFAAELTYPEPEGTSTGLLNAVCQIFGIVFTIFYGYCLNEWGDFWANIF 424

Query: 70  LCLALVLGTLLTLIIPPDLRRQAAH 94
           LC  L LGT LT+IIP DLRRQ A 
Sbjct: 425 LCGTLALGTFLTIIIPNDLRRQKAK 449

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863762|ref|XP_001970601.1| GG10727 [Drosophila erecta] gi|190662468|gb|EDV59660.1| GG10727 [Drosophila erecta]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 72/93 (77%), Gaps = 4/93 (4%)

Query: 2   SLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF 61
           SLLG    FFMTGYLPVGFE  AELT+PEPEGTSSGLLNASAQ FGI FT+ Y +LFT F
Sbjct: 384 SLLG----FFMTGYLPVGFEFGAELTFPEPEGTSSGLLNASAQTFGICFTLFYSELFTTF 439

Query: 62  GDIVANIALCLALVLGTLLTLIIPPDLRRQAAH 94
           GDI ANI + + L++GT++T I   DLRRQ A 
Sbjct: 440 GDIAANITMAVMLIVGTIITAITQSDLRRQNAQ 472

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195474438|ref|XP_002089498.1| GE23783 [Drosophila yakuba] gi|194175599|gb|EDW89210.1| GE23783 [Drosophila yakuba]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 72/93 (77%), Gaps = 4/93 (4%)

Query: 2   SLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF 61
           SLLG    FFMTGYLPVGFE  AELT+PEPEGTSSGLLNASAQ FGI FT+ Y +LFT F
Sbjct: 384 SLLG----FFMTGYLPVGFEFGAELTFPEPEGTSSGLLNASAQTFGICFTLFYSELFTTF 439

Query: 62  GDIVANIALCLALVLGTLLTLIIPPDLRRQAAH 94
           GDI ANI + + L++GT++T I   DLRRQ A 
Sbjct: 440 GDIAANITMAVMLIVGTIITAITQSDLRRQNAQ 472

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921750|ref|NP_610301.1| CG1358, isoform A [Drosophila melanogaster] gi|24586316|ref|NP_724584.1| CG1358, isoform B [Drosophila melanogaster] gi|24586318|ref|NP_724585.1| CG1358, isoform C [Drosophila melanogaster] gi|320543616|ref|NP_001188873.1| CG1358, isoform D [Drosophila melanogaster] gi|7304188|gb|AAF59224.1| CG1358, isoform A [Drosophila melanogaster] gi|17861620|gb|AAL39287.1| GH15861p [Drosophila melanogaster] gi|21645594|gb|AAM71101.1| CG1358, isoform B [Drosophila melanogaster] gi|21645595|gb|AAM71102.1| CG1358, isoform C [Drosophila melanogaster] gi|220947414|gb|ACL86250.1| CG1358-PA [synthetic construct] gi|220956870|gb|ACL90978.1| CG1358-PA [synthetic construct] gi|283046860|gb|ADB04946.1| MIP14896p [Drosophila melanogaster] gi|318068531|gb|ADV37122.1| CG1358, isoform D [Drosophila melanogaster]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 72/93 (77%), Gaps = 4/93 (4%)

Query: 2   SLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF 61
           SLLG    FFMTGYLPVGFE  AELT+PEPEGTSSGLLNASAQ FGI FT+ Y +LFT F
Sbjct: 384 SLLG----FFMTGYLPVGFEFGAELTFPEPEGTSSGLLNASAQTFGICFTLFYSELFTTF 439

Query: 62  GDIVANIALCLALVLGTLLTLIIPPDLRRQAAH 94
           GDI ANI + + L++GT++T I   DLRRQ A 
Sbjct: 440 GDIAANITMAVMLIVGTIITAITQSDLRRQNAQ 472

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195332175|ref|XP_002032774.1| GM20774 [Drosophila sechellia] gi|194124744|gb|EDW46787.1| GM20774 [Drosophila sechellia]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 72/93 (77%), Gaps = 4/93 (4%)

Query: 2   SLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF 61
           SLLG    FFMTGYLPVGFE  AELT+PEPEGTSSGLLNASAQ FGI FT+ Y +LFT F
Sbjct: 384 SLLG----FFMTGYLPVGFEFGAELTFPEPEGTSSGLLNASAQTFGICFTLFYSELFTTF 439

Query: 62  GDIVANIALCLALVLGTLLTLIIPPDLRRQAAH 94
           GDI ANI + + L++GT++T I   DLRRQ A 
Sbjct: 440 GDIAANITMAVMLIVGTIITAITQSDLRRQNAQ 472

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195581272|ref|XP_002080458.1| GD10235 [Drosophila simulans] gi|194192467|gb|EDX06043.1| GD10235 [Drosophila simulans]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 72/93 (77%), Gaps = 4/93 (4%)

Query: 2   SLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF 61
           SLLG    FFMTGYLPVGFE  AELT+PEPEGTSSGLLNASAQ FGI FT+ Y +LFT F
Sbjct: 384 SLLG----FFMTGYLPVGFEFGAELTFPEPEGTSSGLLNASAQTFGICFTLFYSELFTTF 439

Query: 62  GDIVANIALCLALVLGTLLTLIIPPDLRRQAAH 94
           GDI ANI + + L++GT++T I   DLRRQ A 
Sbjct: 440 GDIAANITMAVMLIVGTIITAITQSDLRRQNAQ 472

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
FB|FBgn0033196	482	CG1358 [Drosophila melanogaste	0.854	0.182	0.608	6.2e-22
RGD|735098	546	Flvcr2 "feline leukemia virus	0.844	0.159	0.517	7.7e-18
ZFIN|ZDB-GENE-041210-312	495	flvcr2b "feline leukemia virus	0.825	0.171	0.517	1.3e-17
UNIPROTKB|H7C3Z2	354	FLVCR1 "Feline leukemia virus	0.621	0.180	0.656	1.3e-17
UNIPROTKB|F1NA70	442	FLVCR2 "Uncharacterized protei	0.825	0.192	0.529	2e-17
UNIPROTKB|E1B7A6	556	FLVCR1 "Uncharacterized protei	0.572	0.106	0.677	4.6e-17
UNIPROTKB|E2RSI2	556	FLVCR1 "Uncharacterized protei	0.640	0.118	0.636	4.6e-17
UNIPROTKB|F1S2X6	559	FLVCR1 "Uncharacterized protei	0.572	0.105	0.677	4.6e-17
UNIPROTKB|E2QRV7	523	FLVCR2 "Uncharacterized protei	0.844	0.166	0.505	5.1e-17
UNIPROTKB|E1B772	529	FLVCR2 "Uncharacterized protei	0.893	0.173	0.494	5.2e-17

FB|FBgn0033196 CG1358 [Drosophila melanogaster (taxid:7227)]

 Score = 261 (96.9 bits), Expect = 6.2e-22, P = 6.2e-22
 Identities = 56/92 (60%), Positives = 59/92 (64%)

Query:     2 SLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF 61
             SLLG    FFMTGYLPVGFE  AELT+PEPEGTSSGLLNASAQ FGI FT+ Y +LFT F
Sbjct:   384 SLLG----FFMTGYLPVGFEFGAELTFPEPEGTSSGLLNASAQTFGICFTLFYSELFTTF 439

Query:    62 GDIVANIXXXXXXXXXXXXXXXXXXXXRRQAA 93
             GDI ANI                    RRQ A
Sbjct:   440 GDIAANITMAVMLIVGTIITAITQSDLRRQNA 471

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|735098 Flvcr2 "feline leukemia virus subgroup C cellular receptor family, member 2" [Rattus norvegicus (taxid:10116)]

 Score = 225 (84.3 bits), Expect = 7.7e-18, P = 7.7e-18
 Identities = 45/87 (51%), Positives = 52/87 (59%)

Query:    10 FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIX 69
             FFMTGYLP+GFE A ELTYPE EG SSGLLN SAQVFGI+FT+  GQ+   +G +  NI 
Sbjct:   430 FFMTGYLPLGFEFAVELTYPESEGVSSGLLNVSAQVFGIIFTISQGQIIDNYGSVPGNIF 489

Query:    70 XXXXXXXXXXXXXXXXXXXRRQAAHSD 96
                                RRQ A+ D
Sbjct:   490 LCVFLALGSALTAFIKSDLRRQRANKD 516

GO:0005886 "plasma membrane" evidence=IEA

GO:0015232 "heme transporter activity" evidence=ISO;ISS

GO:0015886 "heme transport" evidence=ISO;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0020037 "heme binding" evidence=ISO;ISS

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-041210-312 flvcr2b "feline leukemia virus subgroup C cellular receptor family, member 2b" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 44/85 (51%), Positives = 53/85 (62%)

Query:    10 FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIX 69
             FFMTGYLP+GFE A ELTYPE EGTSSGLLN SAQVFGI+FT+  G++  +FG +  N+ 
Sbjct:   383 FFMTGYLPLGFEFAVELTYPESEGTSSGLLNCSAQVFGIIFTICQGKIMDSFGTLAGNLF 442

Query:    70 XXXXXXXXXXXXXXXXXXXRRQAAH 94
                                RRQ A+
Sbjct:   443 LCAFLLIGTIITGCIKSDLRRQLAN 467

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|H7C3Z2 FLVCR1 "Feline leukemia virus subgroup C receptor-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 42/64 (65%), Positives = 49/64 (76%)

Query:     5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI 64
             G    FFMTGYLP+GFE A E+TYPE EGTSSGLLNASAQ+FGILFT+  G+L + +G  
Sbjct:   231 GGVLGFFMTGYLPLGFEFAVEITYPESEGTSSGLLNASAQIFGILFTLAQGKLTSDYGPK 290

Query:    65 VANI 68
               NI
Sbjct:   291 AGNI 294

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1NA70 FLVCR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 219 (82.2 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/85 (52%), Positives = 51/85 (60%)

Query:    10 FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIX 69
             FFMTGYLP+GFE AAELTYPE EGTSSGLLN SAQ+FGI FT+  GQ+   FG    N+ 
Sbjct:   357 FFMTGYLPLGFEFAAELTYPESEGTSSGLLNVSAQIFGIAFTISQGQIIDHFGTKAGNLF 416

Query:    70 XXXXXXXXXXXXXXXXXXXRRQAAH 94
                                RRQ A+
Sbjct:   417 LCSFLLLGSIMTAFIKADLRRQQAN 441

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015232 "heme transporter activity" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

UNIPROTKB|E1B7A6 FLVCR1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 218 (81.8 bits), Expect = 4.6e-17, P = 4.6e-17
 Identities = 40/59 (67%), Positives = 49/59 (83%)

Query:    10 FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANI 68
             FFMTGYLP+GFE A E+TYPE EGTSSGLLNA+AQ+FGILFT+  G+L +A+G    N+
Sbjct:   438 FFMTGYLPLGFEFAVEITYPESEGTSSGLLNAAAQIFGILFTLAQGKLTSAYGPRTGNV 496

GO:0097037 "heme export" evidence=IEA

GO:0060323 "head morphogenesis" evidence=IEA

GO:0048536 "spleen development" evidence=IEA

GO:0046620 "regulation of organ growth" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0030218 "erythrocyte differentiation" evidence=IEA

GO:0015232 "heme transporter activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RSI2 FLVCR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 218 (81.8 bits), Expect = 4.6e-17, P = 4.6e-17
 Identities = 42/66 (63%), Positives = 50/66 (75%)

Query:     3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG 62
             + G    FFMTGYLP+GFE A E+TYPE EGTSSGLLNASAQ+FGILFT+  G+L + +G
Sbjct:   430 ITGGVLGFFMTGYLPLGFEFAVEITYPESEGTSSGLLNASAQIFGILFTLAQGKLTSDYG 489

Query:    63 DIVANI 68
                 NI
Sbjct:   490 PRAGNI 495

GO:0097037 "heme export" evidence=IEA

GO:0060323 "head morphogenesis" evidence=IEA

GO:0048536 "spleen development" evidence=IEA

GO:0046620 "regulation of organ growth" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0030218 "erythrocyte differentiation" evidence=IEA

GO:0015232 "heme transporter activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1S2X6 FLVCR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 218 (81.8 bits), Expect = 4.6e-17, P = 4.6e-17
 Identities = 40/59 (67%), Positives = 49/59 (83%)

Query:    10 FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANI 68
             FFMTGYLP+GFE A E+TYPE EGTSSGLLNA+AQ+FGILFT+  G+L + +G  + NI
Sbjct:   437 FFMTGYLPLGFEFAVEITYPESEGTSSGLLNAAAQIFGILFTLAQGKLISNYGPEIGNI 495

GO:0097037 "heme export" evidence=IEA

GO:0060323 "head morphogenesis" evidence=IEA

GO:0048536 "spleen development" evidence=IEA

GO:0046620 "regulation of organ growth" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0030218 "erythrocyte differentiation" evidence=IEA

GO:0015232 "heme transporter activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QRV7 FLVCR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 217 (81.4 bits), Expect = 5.1e-17, P = 5.1e-17
 Identities = 44/87 (50%), Positives = 52/87 (59%)

Query:    10 FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIX 69
             FFMTGYLP+GFE A ELTYPE EG SSGLLN SAQVFGI+FT+  GQ+   +G +  NI 
Sbjct:   408 FFMTGYLPLGFEFAVELTYPESEGISSGLLNVSAQVFGIIFTISQGQIIDNYGTMPGNIF 467

Query:    70 XXXXXXXXXXXXXXXXXXXRRQAAHSD 96
                                RRQ A+ +
Sbjct:   468 LCVFLTLGAALTAFIRADLRRQKANKE 494

GO:0020037 "heme binding" evidence=IEA

GO:0015232 "heme transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1B772 FLVCR2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 217 (81.4 bits), Expect = 5.2e-17, P = 5.2e-17
 Identities = 46/93 (49%), Positives = 54/93 (58%)

Query:    10 FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIX 69
             FFMTGYLP+GFE A ELTYPE EG SSGLLN SAQVFGI+FT+  GQ+   +G +  NI 
Sbjct:   414 FFMTGYLPLGFEFAVELTYPESEGMSSGLLNVSAQVFGIIFTISQGQIIDNYGTMPGNIF 473

Query:    70 XXXXXXXXXXXXXXXXXXXRRQAAHSDF-NIKP 101
                                RRQ A+ +    KP
Sbjct:   474 LCVFLTLGAVLTAFIKADLRRQDANKEIPETKP 506

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q91X85	FLVC2_MOUSE	No assigned EC number	0.6206	0.8446	0.1578	yes	N/A
P60815	FLVC2_RAT	No assigned EC number	0.6321	0.8446	0.1593	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
KOG2563|consensus	480		99.84
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.65
PRK05122	399	major facilitator superfamily transporter; Provisi	97.44
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.33
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.26
PRK03699	394	putative transporter; Provisional	97.11
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.04
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.02
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.0
PRK11663	434	regulatory protein UhpC; Provisional	96.94
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	96.9
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.78
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	96.72
PRK10489	417	enterobactin exporter EntS; Provisional	96.7
TIGR00900	365	2A0121 H+ Antiporter protein.	96.69
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.69
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.63
TIGR00893	399	2A0114 d-galactonate transporter.	96.52
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	96.51
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.51
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	96.49
TIGR00898	505	2A0119 cation transport protein.	96.48
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.45
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.45
TIGR00893	399	2A0114 d-galactonate transporter.	96.44
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	96.4
PRK09874	408	drug efflux system protein MdtG; Provisional	96.36
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.34
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.31
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.1
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	96.09
PRK10642	490	proline/glycine betaine transporter; Provisional	96.06
PRK12382	392	putative transporter; Provisional	96.03
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	96.02
PRK03633	381	putative MFS family transporter protein; Provision	95.99
TIGR00891	405	2A0112 putative sialic acid transporter.	95.92
COG2270	438	Permeases of the major facilitator superfamily [Ge	95.89
PRK11010	491	ampG muropeptide transporter; Validated	95.85
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	95.77
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	95.77
PRK09528	420	lacY galactoside permease; Reviewed	95.57
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	95.49
PRK11195	393	lysophospholipid transporter LplT; Provisional	95.37
PRK10077	479	xylE D-xylose transporter XylE; Provisional	95.32
PRK11043	401	putative transporter; Provisional	95.31
PRK10473	392	multidrug efflux system protein MdtL; Provisional	95.26
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	95.08
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	95.07
PRK10213	394	nepI ribonucleoside transporter; Reviewed	94.99
PRK11010	491	ampG muropeptide transporter; Validated	94.99
TIGR00895	398	2A0115 benzoate transport.	94.98
PRK03545	390	putative arabinose transporter; Provisional	94.98
PRK09705	393	cynX putative cyanate transporter; Provisional	94.96
PRK09874	408	drug efflux system protein MdtG; Provisional	94.94
PRK15011	393	sugar efflux transporter B; Provisional	94.91
PRK12307	426	putative sialic acid transporter; Provisional	94.83
PRK03893	496	putative sialic acid transporter; Provisional	94.77
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	94.74
TIGR00892	455	2A0113 monocarboxylate transporter 1.	94.73
KOG2504|consensus	509		94.73
PRK03545	390	putative arabinose transporter; Provisional	94.7
PTZ00207	591	hypothetical protein; Provisional	94.7
PRK03893	496	putative sialic acid transporter; Provisional	94.69
PRK12307	426	putative sialic acid transporter; Provisional	94.54
PLN00028	476	nitrate transmembrane transporter; Provisional	94.51
PRK10489	417	enterobactin exporter EntS; Provisional	94.5
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	94.5
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	94.49
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	94.46
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	94.38
PRK10091	382	MFS transport protein AraJ; Provisional	94.33
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	94.25
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	94.15
PRK15075	434	citrate-proton symporter; Provisional	94.13
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	94.07
PRK09584	500	tppB putative tripeptide transporter permease; Rev	94.05
TIGR00898	505	2A0119 cation transport protein.	94.03
PRK11902	402	ampG muropeptide transporter; Reviewed	94.02
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	93.93
PRK09952	438	shikimate transporter; Provisional	93.9
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	93.87
PRK15011	393	sugar efflux transporter B; Provisional	93.62
PRK10054	395	putative transporter; Provisional	93.58
PRK11663	434	regulatory protein UhpC; Provisional	93.57
PRK10504	471	putative transporter; Provisional	93.53
PRK11043	401	putative transporter; Provisional	93.48
PRK10207	489	dipeptide/tripeptide permease B; Provisional	93.46
PRK14995	495	methyl viologen resistance protein SmvA; Provision	93.45
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.42
PRK11652	394	emrD multidrug resistance protein D; Provisional	93.41
PRK10077	479	xylE D-xylose transporter XylE; Provisional	93.38
TIGR00901	356	2A0125 AmpG-related permease.	93.37
PRK10207	489	dipeptide/tripeptide permease B; Provisional	93.28
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	93.28
PRK11646	400	multidrug resistance protein MdtH; Provisional	93.22
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	93.12
PRK10504	471	putative transporter; Provisional	93.12
PRK10133	438	L-fucose transporter; Provisional	93.06
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	93.05
PRK10091	382	MFS transport protein AraJ; Provisional	92.98
PRK15462	493	dipeptide/tripeptide permease D; Provisional	92.88
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	92.84
PRK11652	394	emrD multidrug resistance protein D; Provisional	92.79
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	92.74
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	92.68
TIGR00896	355	CynX cyanate transporter. This family of proteins	92.18
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	92.15
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	92.14
TIGR00897	402	2A0118 polyol permease family. This family of prot	92.1
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	92.03
PRK11902	402	ampG muropeptide transporter; Reviewed	91.94
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	91.81
PRK11195	393	lysophospholipid transporter LplT; Provisional	91.64
PRK03699	394	putative transporter; Provisional	91.63
PRK09584	500	tppB putative tripeptide transporter permease; Rev	91.58
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	91.48
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	91.38
TIGR00900	365	2A0121 H+ Antiporter protein.	90.69
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	90.56
PRK11646	400	multidrug resistance protein MdtH; Provisional	90.45
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	90.45
TIGR00891	405	2A0112 putative sialic acid transporter.	90.3
PRK10054	395	putative transporter; Provisional	89.64
PRK12382	392	putative transporter; Provisional	89.57
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	89.47
PRK09705	393	cynX putative cyanate transporter; Provisional	89.32
PRK10406	432	alpha-ketoglutarate transporter; Provisional	89.31
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	88.97
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	88.91
PRK15403	413	multidrug efflux system protein MdtM; Provisional	88.71
KOG0569|consensus	485		88.66
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	88.6
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	88.52
TIGR00788	468	fbt folate/biopterin transporter. The only functio	88.23
KOG0252|consensus	538		88.11
PRK10642	490	proline/glycine betaine transporter; Provisional	88.03
PRK15403	413	multidrug efflux system protein MdtM; Provisional	88.01
PRK05122	399	major facilitator superfamily transporter; Provisi	87.54
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	87.33
TIGR00805	633	oat sodium-independent organic anion transporter.	87.22
PRK10406	432	alpha-ketoglutarate transporter; Provisional	86.97
PRK09952	438	shikimate transporter; Provisional	86.93
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	86.33
PRK10213	394	nepI ribonucleoside transporter; Reviewed	85.88
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	85.67
PRK09528	420	lacY galactoside permease; Reviewed	85.1
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	84.74
PRK09848	448	glucuronide transporter; Provisional	84.35
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	84.27
KOG0255|consensus	521		84.2
PLN00028	476	nitrate transmembrane transporter; Provisional	84.13
KOG2532|consensus	466		84.11
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	84.1
PRK03612	521	spermidine synthase; Provisional	83.78
TIGR00896	355	CynX cyanate transporter. This family of proteins	83.5
PRK03633	381	putative MFS family transporter protein; Provision	83.22
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	83.06
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	82.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	82.9
TIGR00895	398	2A0115 benzoate transport.	82.53
PRK09669	444	putative symporter YagG; Provisional	82.53
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	82.15
PRK10473	392	multidrug efflux system protein MdtL; Provisional	80.18
KOG3764|consensus	464		80.18

>KOG2563|consensus

Probab=99.84  E-value=2.5e-22  Score=159.00  Aligned_cols=95  Identities=45%  Similarity=0.724  Sum_probs=89.4

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc----hhHHHHHHHHHHHHHH
Q psy1755           3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG----DIVANIALCLALVLGT   78 (103)
Q Consensus         3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~----~~~~~~~~~~~~~~~~   78 (103)
                      +.+.++|+|+.+.+|+++|+++|+|||++|++|+|+++.+||++|+++.++.+...++++    ....||.++..+.++.
T Consensus       364 ~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~  443 (480)
T KOG2563|consen  364 TTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGA  443 (480)
T ss_pred             hhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999988887    6678999999999999


Q ss_pred             HHHhhcCCcchhhhhhhcC
Q psy1755          79 LLTLIIPPDLRRQAAHSDF   97 (103)
Q Consensus        79 il~~f~k~~~kR~~~e~~~   97 (103)
                      ++..|+|++|||+++|+..
T Consensus       444 ~lva~~r~~y~R~~~e~~~  462 (480)
T KOG2563|consen  444 ILVAFFRPDYRRLRAEAGN  462 (480)
T ss_pred             HHHhhhhhhHHhHhhhhcc
Confidence            9999999999999999753

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.65  E-value=0.00045  Score=55.60  Aligned_cols=92  Identities=21%  Similarity=0.283  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch-hHHHHHHHHHHHHHHHHH
Q psy1755           3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD-IVANIALCLALVLGTLLT   81 (103)
Q Consensus         3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~il~   81 (103)
                      +...+.|+++++..+..=-+-+|+..|..|+.-=|+-..++...+++-+.+.+.+.+..|+ .+..+.+..+++++.+++
T Consensus       385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll  464 (477)
T PF11700_consen  385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL  464 (477)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999988774 477888889999999999


Q ss_pred             hhcCCcchhhhhh
Q psy1755          82 LIIPPDLRRQAAH   94 (103)
Q Consensus        82 ~f~k~~~kR~~~e   94 (103)
                      .+++.+-.|+|+|
T Consensus       465 ~~v~~~~g~~~A~  477 (477)
T PF11700_consen  465 FFVDVEKGREDAK  477 (477)
T ss_pred             hhccchhhhhccC
Confidence            9999988887765

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.44  E-value=0.0012  Score=50.05  Aligned_cols=86  Identities=19%  Similarity=0.088  Sum_probs=64.9

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      ...+.|+..+...|...-...|...|...+...|+.+...++.+.+...+.+++.+..|..+..+..+.+.+++.++..+
T Consensus       308 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        308 GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888888888877777886666667899999999999988888888898888777656666666666777777666


Q ss_pred             cCCcch
Q psy1755          84 IPPDLR   89 (103)
Q Consensus        84 ~k~~~k   89 (103)
                      .+++++
T Consensus       388 ~~~~~~  393 (399)
T PRK05122        388 LYRRAP  393 (399)
T ss_pred             hccccc
Confidence            666543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.33  E-value=0.00039  Score=52.45  Aligned_cols=85  Identities=15%  Similarity=0.230  Sum_probs=60.2

Q ss_pred             HHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCc
Q psy1755           8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPD   87 (103)
Q Consensus         8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~   87 (103)
                      .+.+..+..|+..-+..|+..|...++..|+.....++.+++.+.+.+++.++.+..+..+..++++++++++.+++.++
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  472 (481)
T TIGR00879       393 IAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPE  472 (481)
T ss_pred             HHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheeccc
Confidence            34444455577777778854444558999999999999999999999988887665555566666777777766655444


Q ss_pred             chhhh
Q psy1755          88 LRRQA   92 (103)
Q Consensus        88 ~kR~~   92 (103)
                      .||++
T Consensus       473 ~~~~~  477 (481)
T TIGR00879       473 TKGRT  477 (481)
T ss_pred             CCCCC
Confidence            44433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.26  E-value=0.0016  Score=51.08  Aligned_cols=91  Identities=19%  Similarity=0.115  Sum_probs=54.4

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhh-hHHHHHHHHHhhhc------------ccchhHHHH-
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQV-FGILFTVVYGQLFT------------AFGDIVANI-   68 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi-~g~i~~~i~~~l~~------------~~~~~~~~~-   68 (103)
                      ...++|++..+......-...|. +|..+ ++.+|+.+..+++ .+++.+.+.+++.|            ..|  |.+. 
T Consensus       355 ~~~~~G~~~~~~~~~~~~~~~~~-~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~--~~~~f  431 (467)
T PRK09556        355 SLFALGFLVFGPQLLIGVAAVGF-VPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG--WAGTF  431 (467)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC--hHHHH
Confidence            34456654433333223456684 45544 9999999999998 55888999999988            222  4433 


Q ss_pred             -HHHHHHHHHHHHHhhcC-CcchhhhhhhcC
Q psy1755          69 -ALCLALVLGTLLTLIIP-PDLRRQAAHSDF   97 (103)
Q Consensus        69 -~~~~~~~~~~il~~f~k-~~~kR~~~e~~~   97 (103)
                       ++.++.+++.+..++++ .+.||.+.||+.
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (467)
T PRK09556        432 AALDIAAIGCICLMAIVAVMEERKIRREKKI  462 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence             33455666666655553 333454555543

>PRK03699 putative transporter; Provisional

Probab=97.11  E-value=0.0027  Score=48.50  Aligned_cols=89  Identities=15%  Similarity=0.059  Sum_probs=65.8

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-HH
Q psy1755           3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTL-LT   81 (103)
Q Consensus         3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i-l~   81 (103)
                      +.+.+.|++.++.+|...-.+.|. .|...+...|.+...+++++.+-+.+.+++.+..|.....+..+.++.++.+ ..
T Consensus       299 ~~~~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (394)
T PRK03699        299 YAILGLGFFSSAIYTTIITLGSQQ-TKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI  377 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence            455678998999999988888884 4666677889999999999999999999998877765555655555555544 34


Q ss_pred             hhcCCcchhhh
Q psy1755          82 LIIPPDLRRQA   92 (103)
Q Consensus        82 ~f~k~~~kR~~   92 (103)
                      .+.|-+.||++
T Consensus       378 ~~~~~~~~~~~  388 (394)
T PRK03699        378 LLGFVSKHRQH  388 (394)
T ss_pred             HHHHHHHHHhc
Confidence            44555556654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.04  E-value=0.012  Score=36.92  Aligned_cols=82  Identities=21%  Similarity=0.156  Sum_probs=59.5

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      ...+.|+..+...|...-...|..-+...+...|+.....++.+.+.+.+.+++.+..+..+..+.......++.+...+
T Consensus        57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        57 ARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            34678888888889998999997655556889999999999999998888888876655444555545555555555444


Q ss_pred             cC
Q psy1755          84 IP   85 (103)
Q Consensus        84 ~k   85 (103)
                      ..
T Consensus       137 ~~  138 (141)
T TIGR00880       137 LL  138 (141)
T ss_pred             cC
Confidence            43

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.02  E-value=0.0065  Score=47.41  Aligned_cols=77  Identities=18%  Similarity=0.192  Sum_probs=50.9

Q ss_pred             HHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHH-HHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755           8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILF-TVVYGQLFTAFGDIVANIALCLALVLGTLLTLII   84 (103)
Q Consensus         8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~   84 (103)
                      .|++..+..+...-++.|...|...++.+|+.+..+++.+.+. +.+.+++.|..|..+..+.+.+++.+++++...+
T Consensus       357 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        357 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            4444433333333456786656667899999999999988775 7788888887775555555556666666655544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.0017  Score=51.83  Aligned_cols=62  Identities=19%  Similarity=0.134  Sum_probs=52.5

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANI   68 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~   68 (103)
                      ..+.|+|+++++|..+-+|.+ .-| .++..+|.+...+-++|++.+.+.+++.|..|......
T Consensus       331 l~~ig~F~simfPTIfslal~-~l~-~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         331 LFLIGLFNSIMFPTIFSLALK-NLG-EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             HHHHHHHhHHHHHHHHHHHHh-ccC-ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            456899999999999999999 556 66666677778889999999999999999998865544

>PRK11663 regulatory protein UhpC; Provisional

Probab=96.94  E-value=0.0044  Score=48.11  Aligned_cols=82  Identities=18%  Similarity=0.133  Sum_probs=52.9

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh-cC
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI-IP   85 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f-~k   85 (103)
                      .+|++..+......-...|...|..-++..|+.+..+++.+++-+.+.+++.|..|-...-+...++.+++.+.+.+ .|
T Consensus       346 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  425 (434)
T PRK11663        346 TIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN  425 (434)
T ss_pred             HHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34544433222223345675556666999999999999999999999999998877444444455555555554443 44


Q ss_pred             Ccc
Q psy1755          86 PDL   88 (103)
Q Consensus        86 ~~~   88 (103)
                      ++-
T Consensus       426 ~~~  428 (434)
T PRK11663        426 AQA  428 (434)
T ss_pred             hhc
Confidence            433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=96.90  E-value=0.012  Score=42.90  Aligned_cols=78  Identities=22%  Similarity=0.189  Sum_probs=60.2

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy1755           3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL   80 (103)
Q Consensus         3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il   80 (103)
                      +...+.|+..+...|...-+..|...+...+...|+.....++..++.+.+.+.+.+..+-.+..+......+++.++
T Consensus        90 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen   90 IARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             hhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            345678999999999999999996666566889999999999999998888888776666545555555555555554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.78  E-value=0.0014  Score=51.56  Aligned_cols=61  Identities=13%  Similarity=0.060  Sum_probs=49.5

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755           3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD   63 (103)
Q Consensus         3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~   63 (103)
                      +.+.+.|+..+...|....+..|..-|...+...|+.+...++.+++-+.+.+.+.+..+.
T Consensus       338 i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~  398 (455)
T TIGR00892       338 IYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKN  398 (455)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCC
Confidence            4466788888888888899999976555558999999999999999999999888876653

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=96.72  E-value=0.012  Score=44.52  Aligned_cols=81  Identities=20%  Similarity=0.184  Sum_probs=57.2

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHHHh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI-VANIALCLALVLGTLLTL   82 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~il~~   82 (103)
                      ...+.|++..+..|....+..|..-|..-++..|+.+..+++.+.+-+.+.+++.+..+.. ...+....+.+++.++.+
T Consensus       314 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        314 AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            4456788888888999999999665555588899999999999999999999988765543 223333344444444444


Q ss_pred             hc
Q psy1755          83 II   84 (103)
Q Consensus        83 f~   84 (103)
                      +.
T Consensus       394 ~~  395 (406)
T PRK11551        394 LL  395 (406)
T ss_pred             HH
Confidence            33

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.70  E-value=0.011  Score=45.38  Aligned_cols=84  Identities=18%  Similarity=0.130  Sum_probs=54.6

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHH-HHHHHHHh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLAL-VLGTLLTL   82 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~il~~   82 (103)
                      ...+.|+..+...|...-+..|...+...+...|+.....++.+.+-..+.+++.+..|....-+..+.+. +++.+.+.
T Consensus       318 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        318 CLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            34456666665566666666675544445888999999888888888899998888777644444444333 44444445


Q ss_pred             hcCCc
Q psy1755          83 IIPPD   87 (103)
Q Consensus        83 f~k~~   87 (103)
                      .+++.
T Consensus       398 ~~~~~  402 (417)
T PRK10489        398 VLGEL  402 (417)
T ss_pred             hcccc
Confidence            55543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=96.69  E-value=0.015  Score=42.47  Aligned_cols=82  Identities=15%  Similarity=0.120  Sum_probs=57.3

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII   84 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~   84 (103)
                      ..+.|+..+...|...-+..|...|...+...|+.....++..++-+.+.+.+.+..|-.+..+.......++.++..++
T Consensus        99 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900        99 AGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            45668888888898889999976555557788999999999988888888777766554444444444444554444444


Q ss_pred             CC
Q psy1755          85 PP   86 (103)
Q Consensus        85 k~   86 (103)
                      |.
T Consensus       179 ~~  180 (365)
T TIGR00900       179 RI  180 (365)
T ss_pred             cc
Confidence            43

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.69  E-value=0.019  Score=42.57  Aligned_cols=81  Identities=17%  Similarity=0.172  Sum_probs=60.8

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII   84 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~   84 (103)
                      ..+.|++.+...|.......|.. |...+...|+.+...++.+.+-+.+.+.+.+..|-.+..+....+.+++.++..++
T Consensus       295 ~~~~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       295 QLLNAIFIGILAGIGMLYFQDLM-PGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence            34557777778888888888854 76677888999999999888888999988877665555555666667777776666


Q ss_pred             CC
Q psy1755          85 PP   86 (103)
Q Consensus        85 k~   86 (103)
                      |+
T Consensus       374 ~~  375 (375)
T TIGR00899       374 KD  375 (375)
T ss_pred             cC
Confidence            53

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR01272 gluP glucose/galactose transporter

Probab=96.63  E-value=0.012  Score=44.28  Aligned_cols=62  Identities=24%  Similarity=0.270  Sum_probs=50.8

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANI   68 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~   68 (103)
                      ..+.|++.++++|..+-++.+ .+|...+..++++ ..++++|++.+.+.+.+.|+.|..+..+
T Consensus       237 ~~l~g~~~s~i~P~~~s~a~~-~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       237 VLALGLFNSIMFPTIFSLALN-ALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            446899999999999999999 4666667777775 6788999999999999999877655544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.52  E-value=0.025  Score=41.38  Aligned_cols=76  Identities=22%  Similarity=0.306  Sum_probs=57.5

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc-hhHHHHHHHHHHHHHHHHH
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG-DIVANIALCLALVLGTLLT   81 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~il~   81 (103)
                      ..+|.+..+..|....+..|...|...+...|+.+...++.+.+.+.+.+.+.+..| ..+..++.+.+.+++.+..
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       319 VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            345556666899999999998777777999999999999999999999999988777 3344444445555554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=96.51  E-value=0.02  Score=41.38  Aligned_cols=82  Identities=29%  Similarity=0.291  Sum_probs=66.0

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy1755           3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTL   82 (103)
Q Consensus         3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~   82 (103)
                      +...+.|++.+...|....+..|...|...+...|+.....++.+.+.+.+.+.+.++.+..+..+....+.+++.++..
T Consensus       270 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            34567888899999999999999876677799999999999999999999999988876665666666666666666554


Q ss_pred             hc
Q psy1755          83 II   84 (103)
Q Consensus        83 f~   84 (103)
                      ++
T Consensus       350 ~~  351 (352)
T cd06174         350 LL  351 (352)
T ss_pred             ec
Confidence            43

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.51  E-value=0.022  Score=43.81  Aligned_cols=77  Identities=8%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      .++.|++..+.+|....+..|+..|...++..|+.+..+++.|++.+.+.+.+..  +......+.....+++.+...+
T Consensus       287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~  363 (368)
T TIGR00903       287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALL  363 (368)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHh
Confidence            3456778888889999999997666677999999999999999999988887773  4333344445555555555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=96.49  E-value=0.025  Score=42.04  Aligned_cols=83  Identities=16%  Similarity=0.069  Sum_probs=56.4

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh-
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTL-   82 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~-   82 (103)
                      ...+.|+..+...|...-+..|...|..-+...|+.....++.+.+-..+.+.+.+..+-.+..+.......+..++.. 
T Consensus        99 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710        99 LRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777788888999999999654444477889999999998888888888777666654444444444444444433 


Q ss_pred             hcCC
Q psy1755          83 IIPP   86 (103)
Q Consensus        83 f~k~   86 (103)
                      +.|+
T Consensus       179 ~~~~  182 (385)
T TIGR00710       179 ILPE  182 (385)
T ss_pred             hCCC
Confidence            3443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00898 2A0119 cation transport protein

Probab=96.48  E-value=0.013  Score=45.92  Aligned_cols=83  Identities=18%  Similarity=0.107  Sum_probs=56.8

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII   84 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~   84 (103)
                      ..+.+++....++...-+..|+..+...++..|+.+..+.+++++-+.+.+ + ++.+.....+...++..++.++.+++
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l  494 (505)
T TIGR00898       417 AVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFL  494 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence            345566677788888999999644444588889999999999998888876 3 33333334445555666666666777


Q ss_pred             CCcch
Q psy1755          85 PPDLR   89 (103)
Q Consensus        85 k~~~k   89 (103)
                      ++..+
T Consensus       495 pet~~  499 (505)
T TIGR00898       495 PETKG  499 (505)
T ss_pred             cCCCC
Confidence            76433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.45  E-value=0.017  Score=45.73  Aligned_cols=82  Identities=21%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             hhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc----------hhHHHHHHHHHHHHHHHHH
Q psy1755          12 MTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG----------DIVANIALCLALVLGTLLT   81 (103)
Q Consensus        12 ~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~----------~~~~~~~~~~~~~~~~il~   81 (103)
                      ..+..|+..-+..|+-.+.--++..|+.+..+++.+++.+.+.+.+.++.+          -....++.+++++++.+..
T Consensus       406 ~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  485 (502)
T TIGR00887       406 NFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT  485 (502)
T ss_pred             hcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence            344566777778895434445899999999999999999999988877432          1123344555666666666


Q ss_pred             hhcCCcchhhhh
Q psy1755          82 LIIPPDLRRQAA   93 (103)
Q Consensus        82 ~f~k~~~kR~~~   93 (103)
                      ++++|..+|...
T Consensus       486 ~~lpEt~~~~le  497 (502)
T TIGR00887       486 LLIPETKGKSLE  497 (502)
T ss_pred             eEeccCCCCCHH
Confidence            667776555433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00897 2A0118 polyol permease family

Probab=96.45  E-value=0.039  Score=42.25  Aligned_cols=80  Identities=23%  Similarity=0.364  Sum_probs=63.1

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      .+.+.|++.+...|.. ....| ..|...+...|+.+...++.+.+-+.+.+.+.+..|-....+..+++.+++.++.+|
T Consensus       322 ~~~~~G~~~~~~~~~~-~~~~~-~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       322 IAIALGIFLAGYVPLA-AVFPT-LAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHh-hCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            3456777777766654 34456 567777999999999999999999999999998888666677777788888888888


Q ss_pred             cC
Q psy1755          84 IP   85 (103)
Q Consensus        84 ~k   85 (103)
                      +|
T Consensus       400 ~~  401 (402)
T TIGR00897       400 IR  401 (402)
T ss_pred             hc
Confidence            76

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.44  E-value=0.019  Score=42.07  Aligned_cols=78  Identities=15%  Similarity=0.049  Sum_probs=55.3

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTL   82 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~   82 (103)
                      -.+.|+..+...|...-+..|...|...+...|+.....++.+++...+.+++.++.+-.+..+......++..++..
T Consensus        89 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  166 (399)
T TIGR00893        89 RVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL  166 (399)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh
Confidence            457788888899999999999654444578888999999998888888888777766644444444444444444433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=96.40  E-value=0.039  Score=41.21  Aligned_cols=83  Identities=17%  Similarity=0.102  Sum_probs=55.7

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH-hh
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLT-LI   83 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~-~f   83 (103)
                      ..+.|++.+...|...-+..|...+..-+...|+.....++.+.+-+.+.+.+.+..+-.+..+..+....+..++. .+
T Consensus        86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (377)
T PRK11102         86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF  165 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence            45678888888888888999965444447888888888888888777777777765554444444444444444443 44


Q ss_pred             cCCc
Q psy1755          84 IPPD   87 (103)
Q Consensus        84 ~k~~   87 (103)
                      .|++
T Consensus       166 ~~~~  169 (377)
T PRK11102        166 IPET  169 (377)
T ss_pred             CCcc
Confidence            4543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=96.36  E-value=0.02  Score=43.13  Aligned_cols=81  Identities=7%  Similarity=-0.062  Sum_probs=59.2

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      ...+.|++.+...|.......+.+-|...+...|+.....++.+.+-+.+.+++.+..|-.+..+...++.+++.++..+
T Consensus       317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            34567888888888888888887766667888888888888888888888888887766545555555555665555444


Q ss_pred             c
Q psy1755          84 I   84 (103)
Q Consensus        84 ~   84 (103)
                      .
T Consensus       397 ~  397 (408)
T PRK09874        397 S  397 (408)
T ss_pred             H
Confidence            3

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.34  E-value=0.05  Score=40.37  Aligned_cols=81  Identities=23%  Similarity=0.178  Sum_probs=50.0

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhH--HHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTS--SGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~s--sgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      .+.|.+.....|....+..|...+......  .|.....+++.+.+-+.+.+.+.+..+-.+..+....+.++..++..+
T Consensus        95 ~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899        95 VLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            345667777889888888886533332322  567777777777777777777776655444555545544555444433


Q ss_pred             -cCC
Q psy1755          84 -IPP   86 (103)
Q Consensus        84 -~k~   86 (103)
                       .|+
T Consensus       175 ~~~~  178 (375)
T TIGR00899       175 FLPS  178 (375)
T ss_pred             hCCC
Confidence             444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.31  E-value=0.013  Score=45.42  Aligned_cols=69  Identities=19%  Similarity=0.199  Sum_probs=49.9

Q ss_pred             HHHhhcCCCCchhHHHHHHHHhhhhHH-HHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcchh
Q psy1755          22 LAAELTYPEPEGTSSGLLNASAQVFGI-LFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLRR   90 (103)
Q Consensus        22 la~E~tyPv~e~~ssgll~~~~qi~g~-i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~kR   90 (103)
                      .+.|..-|..-++..|+.+..+++.|. +-+.+.+.+.|..|-.+..+.+.+..+++.++.++++++.||
T Consensus       369 ~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       369 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             HHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            466754444558899999999998864 567888888887775455566666677777777777776676

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.10  E-value=0.035  Score=41.46  Aligned_cols=73  Identities=16%  Similarity=0.278  Sum_probs=51.2

Q ss_pred             hhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcc
Q psy1755          15 YLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDL   88 (103)
Q Consensus        15 ~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~   88 (103)
                      .....+--+++ .||.+.++..|++-....+.+.++..+..++.+++.+............++++...|+|+.-
T Consensus       113 ~~ta~lvt~~~-NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  113 FNTASLVTCVR-NFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             hhhHHHHHHHH-hCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            34445555555 89999999999999999999999999999888774333222111233455666677776653

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=96.09  E-value=0.089  Score=38.51  Aligned_cols=80  Identities=14%  Similarity=0.130  Sum_probs=50.3

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-HHhhc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTL-LTLII   84 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i-l~~f~   84 (103)
                      .+.|+..+..++.......| .+|...+...|+.....++.+++...+.+.+.+..+-.+..+......++..+ .+.+.
T Consensus        99 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  177 (377)
T TIGR00890        99 GLASAGVGIAYGIALNTAVK-WFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI  177 (377)
T ss_pred             HHHhHHHHHHHHhHHHHHHH-HcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence            46677777777888777777 56777788888888888887776666666665544443444444444444333 34444


Q ss_pred             CC
Q psy1755          85 PP   86 (103)
Q Consensus        85 k~   86 (103)
                      |+
T Consensus       178 ~~  179 (377)
T TIGR00890       178 GY  179 (377)
T ss_pred             ec
Confidence            43

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=96.06  E-value=0.089  Score=41.60  Aligned_cols=82  Identities=10%  Similarity=0.101  Sum_probs=49.3

Q ss_pred             HHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccch-hHHHHHHHHHHHHHHHHHhhcC
Q psy1755           8 RSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGD-IVANIALCLALVLGTLLTLIIP   85 (103)
Q Consensus         8 ~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~il~~f~k   85 (103)
                      .|++.+...+...-...|+ ||... ++..|+.+..+.+.|.+.+.+.+++.+..+. ....+......+++.+..++.+
T Consensus       352 ~g~~~~~~~g~~~~~~~~~-~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~p  430 (490)
T PRK10642        352 LAVILNCFTGVMASTLPAM-FPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMK  430 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            3444333444444556674 66554 5667877777888888888888888765543 2233334445555666666676


Q ss_pred             Ccchh
Q psy1755          86 PDLRR   90 (103)
Q Consensus        86 ~~~kR   90 (103)
                      |..||
T Consensus       431 es~~~  435 (490)
T PRK10642        431 ETANR  435 (490)
T ss_pred             cccCC
Confidence            65443

>PRK12382 putative transporter; Provisional

Probab=96.03  E-value=0.069  Score=40.39  Aligned_cols=81  Identities=19%  Similarity=0.066  Sum_probs=59.7

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII   84 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~   84 (103)
                      ..+.|+..+...|...-...|..-|...++..|+.+...++.+.+-+.+.+++.+..|-.+..++.+.+.+++.++..+.
T Consensus       309 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        309 AALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            34567666777787766777766556668999999999999999999999999888775555566666666666665544


Q ss_pred             C
Q psy1755          85 P   85 (103)
Q Consensus        85 k   85 (103)
                      +
T Consensus       389 ~  389 (392)
T PRK12382        389 F  389 (392)
T ss_pred             c
Confidence            3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=96.02  E-value=0.11  Score=39.42  Aligned_cols=84  Identities=18%  Similarity=0.033  Sum_probs=54.0

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TL   82 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~   82 (103)
                      .-.+.|+..+...|....+..|...|...+...|+.+...++.+.+-..+...+.+..+-.+..+....+.++.+++ ..
T Consensus       109 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (406)
T PRK11551        109 ARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMR  188 (406)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888888899999999996655566888898888888887777666555554444333333333333333333 34


Q ss_pred             hcCCc
Q psy1755          83 IIPPD   87 (103)
Q Consensus        83 f~k~~   87 (103)
                      ++|++
T Consensus       189 ~l~~~  193 (406)
T PRK11551        189 WLPES  193 (406)
T ss_pred             hCCCC
Confidence            45554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=95.99  E-value=0.065  Score=40.59  Aligned_cols=73  Identities=15%  Similarity=-0.051  Sum_probs=51.8

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLG   77 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~   77 (103)
                      ..++|+......|...-.+.|...|.......+..+...++.+++-+.+.+++.|..+..+.-.....+..+.
T Consensus       292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~  364 (381)
T PRK03633        292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIY  364 (381)
T ss_pred             HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            3456776777899999999997655444566777778888999999999999988877544444444444333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=95.92  E-value=0.13  Score=38.23  Aligned_cols=61  Identities=20%  Similarity=0.096  Sum_probs=46.8

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIV   65 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~   65 (103)
                      -.+.|+..+...|...-+..|...|..-+...|+.....++..++-..+.+.+.+..+..|
T Consensus       107 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w  167 (405)
T TIGR00891       107 RLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW  167 (405)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence            3567888888899999999997766555888899888888888887777777766555334

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=95.89  E-value=0.029  Score=45.15  Aligned_cols=90  Identities=20%  Similarity=0.194  Sum_probs=77.4

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHHHh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI-VANIALCLALVLGTLLTL   82 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~il~~   82 (103)
                      ...+.|++.+|.....=.+-.++..|..|+.-=|+-+.+|+..++.-+++.+.+.+-.|+. .....+..++.++.+++.
T Consensus       347 ~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~  426 (438)
T COG2270         347 LGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL  426 (438)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence            3468999999999999999999999999999999999999999999998888777666653 566777788899999999


Q ss_pred             hcCCcchhhhhh
Q psy1755          83 IIPPDLRRQAAH   94 (103)
Q Consensus        83 f~k~~~kR~~~e   94 (103)
                      ++|.+ +|+++|
T Consensus       427 ~v~~~-~~~~~~  437 (438)
T COG2270         427 RVKVP-GRREAE  437 (438)
T ss_pred             eecCC-CCcccc
Confidence            99988 666665

>PRK11010 ampG muropeptide transporter; Validated

Probab=95.85  E-value=0.11  Score=41.38  Aligned_cols=72  Identities=25%  Similarity=0.135  Sum_probs=49.1

Q ss_pred             HHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcc
Q psy1755          17 PVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDL   88 (103)
Q Consensus        17 Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~   88 (103)
                      +...-+..+++-+.-.++..|+++...++.+.+...+.+++.+..|-.....+...+.+.+.++..+.|++.
T Consensus       335 ~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~~  406 (491)
T PRK11010        335 AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQTL  406 (491)
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            333444444444455578889999999999898888899998877643444445566677777766666543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=95.77  E-value=0.033  Score=43.00  Aligned_cols=83  Identities=13%  Similarity=0.134  Sum_probs=57.2

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH-h
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLT-L   82 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~-~   82 (103)
                      ...+.|+..+...|...-+..|...|...+...|+.....++.+.+-+.+.+++.++.+-.|..+......++..++. +
T Consensus        96 ~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  175 (485)
T TIGR00711        96 FRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFF  175 (485)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHH
Confidence            345678888889999999999976555557888888888888888888888888776665555554444433333333 3


Q ss_pred             hcCC
Q psy1755          83 IIPP   86 (103)
Q Consensus        83 f~k~   86 (103)
                      +.|+
T Consensus       176 ~~~~  179 (485)
T TIGR00711       176 ILPR  179 (485)
T ss_pred             HcCC
Confidence            3443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=95.77  E-value=0.086  Score=39.72  Aligned_cols=83  Identities=10%  Similarity=-0.129  Sum_probs=52.9

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHH---HhhhcccchhHHHHHHHHHHHHHHHHH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVY---GQLFTAFGDIVANIALCLALVLGTLLT   81 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~---~~l~~~~~~~~~~~~~~~~~~~~~il~   81 (103)
                      -.+.|+..+...|...-+..|...|...+...|+.....++++++-..+.   ....+..+-.+..+......++..+..
T Consensus       134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~  213 (481)
T TIGR00879       134 RVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL  213 (481)
T ss_pred             HHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            35678888888999999999977666668888888888888777766665   322233333333333333334444445


Q ss_pred             hhcCCc
Q psy1755          82 LIIPPD   87 (103)
Q Consensus        82 ~f~k~~   87 (103)
                      ++++++
T Consensus       214 ~~l~~~  219 (481)
T TIGR00879       214 FFLPES  219 (481)
T ss_pred             hcCCCC
Confidence            555553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.57  E-value=0.096  Score=40.21  Aligned_cols=90  Identities=12%  Similarity=0.039  Sum_probs=53.1

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHH-HHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHH-HHHHhhc
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGL-LNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLG-TLLTLII   84 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgl-l~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~il~~f~   84 (103)
                      +.|+......+...++..|..-|...++..+. .+..+++.+++-..+.+++.|..|-....+....+.+++ .+...+.
T Consensus       324 l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        324 LHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444456666777786533333333333 456678888888889999998777434444444444433 3445566


Q ss_pred             CCcchhhhhhhc
Q psy1755          85 PPDLRRQAAHSD   96 (103)
Q Consensus        85 k~~~kR~~~e~~   96 (103)
                      |++.+|.+.+++
T Consensus       404 ~~~~~~~~~~~~  415 (420)
T PRK09528        404 SGDRELSLLRRQ  415 (420)
T ss_pred             cCCchhhHHHhh
Confidence            777666665554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=95.49  E-value=0.095  Score=44.62  Aligned_cols=83  Identities=23%  Similarity=0.227  Sum_probs=60.3

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      ..++|++.++..|...-+.+|+ ||-.+ ++..|+..+.+.+++++-+.+.+.+.+. +.....++.+++++++.++.++
T Consensus       655 ~~l~g~~~~~~~~~~~a~~aEl-~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~  732 (742)
T TIGR01299       655 LCLFGGLSIAAWNALDVLTVEL-YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK  732 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh
Confidence            3567888888999999999995 77666 7899999999999999999888877653 2222333344555666666667


Q ss_pred             cCCcch
Q psy1755          84 IPPDLR   89 (103)
Q Consensus        84 ~k~~~k   89 (103)
                      +++..+
T Consensus       733 LPET~~  738 (742)
T TIGR01299       733 LPDTRG  738 (742)
T ss_pred             CCCCcc
Confidence            765443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=95.37  E-value=0.11  Score=39.97  Aligned_cols=81  Identities=12%  Similarity=0.040  Sum_probs=56.3

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCC-chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEP-EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII   84 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~-e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~   84 (103)
                      .+.|++.+...+.......|.+-+.. .+...++.+...|++..+-..+.+. .+..|..+.+++.+.+..+++.+...+
T Consensus       301 ~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        301 ILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             HHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35666655555544555556432322 3678889999999998888888774 467888889999888888888777666


Q ss_pred             CCc
Q psy1755          85 PPD   87 (103)
Q Consensus        85 k~~   87 (103)
                      |-+
T Consensus       380 ~~~  382 (393)
T PRK11195        380 RWH  382 (393)
T ss_pred             HHH
Confidence            554

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=95.32  E-value=0.12  Score=39.97  Aligned_cols=75  Identities=16%  Similarity=0.251  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHhhcCCCC-chhHHHHHHHHhhhhHHHHHHHHHhhh------cccchhHHHHHHHHHHHHHHHHHhhcCCc
Q psy1755          15 YLPVGFELAAELTYPEP-EGTSSGLLNASAQVFGILFTVVYGQLF------TAFGDIVANIALCLALVLGTLLTLIIPPD   87 (103)
Q Consensus        15 ~~Pi~lEla~E~tyPv~-e~~ssgll~~~~qi~g~i~~~i~~~l~------~~~~~~~~~~~~~~~~~~~~il~~f~k~~   87 (103)
                      ..|...-+..|. +|.. -++..|+....+++++++...+...+.      ++.+..+..++.....++++++..++.++
T Consensus       381 ~~~~~~~~~~e~-~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  459 (479)
T PRK10077        381 WGPVCWVLLSEI-FPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  459 (479)
T ss_pred             ccchhHHHhHhh-CChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcccc
Confidence            447788888995 6644 488899999988888887765554333      33333334444444445555554444333


Q ss_pred             chh
Q psy1755          88 LRR   90 (103)
Q Consensus        88 ~kR   90 (103)
                      -|+
T Consensus       460 ~~~  462 (479)
T PRK10077        460 TKG  462 (479)
T ss_pred             CCC
Confidence            333

>PRK11043 putative transporter; Provisional

Probab=95.31  E-value=0.25  Score=37.51  Aligned_cols=81  Identities=16%  Similarity=0.091  Sum_probs=49.0

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII   84 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~   84 (103)
                      .+.|+..+...+....+..| .||..+ ....+..+...++.+.+.+.+.+.+.+..+-.+..+....+.++..++..++
T Consensus       102 ~l~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        102 FVQAVGVCSAAVIWQALVID-RYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             HHHHhhhHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            34566555666666666777 455443 4455677777777777777777777776664444444444445555555555


Q ss_pred             CCc
Q psy1755          85 PPD   87 (103)
Q Consensus        85 k~~   87 (103)
                      +++
T Consensus       181 ~~~  183 (401)
T PRK11043        181 KPS  183 (401)
T ss_pred             CCC
Confidence            554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=95.26  E-value=0.22  Score=37.67  Aligned_cols=82  Identities=15%  Similarity=0.061  Sum_probs=51.2

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hhhc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TLII   84 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~f~   84 (103)
                      .+.|+..+...+...-+..|...|..-+...|+.+...++.+.+-+.+.+.+.+..+-.+..++.+.+..+..++ ..+.
T Consensus        99 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  178 (392)
T PRK10473         99 FLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFIL  178 (392)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHc
Confidence            456777777788888888885544444677788888888777776666666555555334444444444444333 3445


Q ss_pred             CCc
Q psy1755          85 PPD   87 (103)
Q Consensus        85 k~~   87 (103)
                      |++
T Consensus       179 ~~~  181 (392)
T PRK10473        179 KET  181 (392)
T ss_pred             CCC
Confidence            554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=95.08  E-value=0.13  Score=40.07  Aligned_cols=57  Identities=14%  Similarity=0.040  Sum_probs=43.3

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc
Q psy1755           3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF   61 (103)
Q Consensus         3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~   61 (103)
                      +...+.|+|+++++|..+.++.+.. +.....+++.+.+.. ++|.+++.+.+++.|+.
T Consensus       326 ~~l~~~glf~s~~fp~i~sl~~~~~-g~~~~~~s~~l~~~~-~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       326 YCLTLCSAFMSLMFPTIYGIALKGL-GQDTKYGAAGLVMAI-IGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhHHHHHHHH-hccchHHHHHHHHHHHh
Confidence            3456899999999999999999955 433333344444443 99999999999999954

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00889 2A0110 nucleoside transporter

Probab=95.07  E-value=0.17  Score=39.35  Aligned_cols=92  Identities=7%  Similarity=-0.054  Sum_probs=56.7

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHH-HHhhhhHHHHHHHHHhhhcccch----hHHH-H-HHHHHHHHH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLN-ASAQVFGILFTVVYGQLFTAFGD----IVAN-I-ALCLALVLG   77 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~-~~~qi~g~i~~~i~~~l~~~~~~----~~~~-~-~~~~~~~~~   77 (103)
                      ..+.|+......|....+..|..-|...+...|+.+ ...++.+++-+.+.+++.++.|.    .|.. | ..+.+..++
T Consensus       315 ~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~  394 (418)
T TIGR00889       315 MIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAIL  394 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence            345666666667887888888554455578888886 55677888888888888887653    1222 2 233343444


Q ss_pred             H-HHHhhcCCcchhhhhhhc
Q psy1755          78 T-LLTLIIPPDLRRQAAHSD   96 (103)
Q Consensus        78 ~-il~~f~k~~~kR~~~e~~   96 (103)
                      . ...+++|++-+..+.|++
T Consensus       395 ~~l~~~~~~~~~~~~~~~~~  414 (418)
T TIGR00889       395 AVLFMIFFKYSHNAIKVDDR  414 (418)
T ss_pred             HHHHHHHhCCcccCCCCccc
Confidence            4 445566765444455443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=94.99  E-value=0.29  Score=37.59  Aligned_cols=70  Identities=11%  Similarity=0.042  Sum_probs=50.7

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALV   75 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~   75 (103)
                      .+.|++.+...|...-+..|..-+...+...|+.....++...+-+.+.+.+.+..|-.+..++...+.+
T Consensus       116 ~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~  185 (394)
T PRK10213        116 ACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGV  185 (394)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            5678888899999999999965444457888999988888888888888777766554444444333333

>PRK11010 ampG muropeptide transporter; Validated

Probab=94.99  E-value=0.31  Score=38.87  Aligned_cols=86  Identities=13%  Similarity=-0.009  Sum_probs=54.9

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc-cchhHHHHHHHHHHHHHHHHH
Q psy1755           3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA-FGDIVANIALCLALVLGTLLT   81 (103)
Q Consensus         3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~il~   81 (103)
                      +...+.|++.....|..--+..|...|..-+...|+......+..++-..+..++.++ .|-.+..+..+...++..+..
T Consensus       112 ~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~  191 (491)
T PRK11010        112 ALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence            3455678888888888888899975444446667877777777766666666666663 243334444444555555555


Q ss_pred             hhcCCcc
Q psy1755          82 LIIPPDL   88 (103)
Q Consensus        82 ~f~k~~~   88 (103)
                      ++.|++.
T Consensus       192 ~~~~e~~  198 (491)
T PRK11010        192 LLAPEPT  198 (491)
T ss_pred             HhcCCCc
Confidence            5666653

>TIGR00895 2A0115 benzoate transport

Probab=94.98  E-value=0.11  Score=38.35  Aligned_cols=84  Identities=21%  Similarity=0.151  Sum_probs=56.2

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHH-HHHHHHHHHHh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALC-LALVLGTLLTL   82 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~-~~~~~~~il~~   82 (103)
                      ...+.|+..+...|...-+..|...+...+...|+.....++.+.+-..+.+++.+..|-.+..++.. .......+...
T Consensus       111 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (398)
T TIGR00895       111 LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR  190 (398)
T ss_pred             HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHH
Confidence            34567888888899999999996544455788899888888888888888877776655433333332 22233334445


Q ss_pred             hcCCc
Q psy1755          83 IIPPD   87 (103)
Q Consensus        83 f~k~~   87 (103)
                      +.+++
T Consensus       191 ~~~~~  195 (398)
T TIGR00895       191 FLPES  195 (398)
T ss_pred             hCCCC
Confidence            55554

>PRK03545 putative arabinose transporter; Provisional

Probab=94.98  E-value=0.31  Score=36.95  Aligned_cols=75  Identities=15%  Similarity=0.079  Sum_probs=52.6

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL   80 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il   80 (103)
                      .+.|+......|...-+..|...|...+...|+.....++...+-+.+.+.+.+..|-.+..+....+.++..++
T Consensus       105 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~  179 (390)
T PRK03545        105 IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLL  179 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence            456666666778888888887766666888899988888888888888777766656545555555444444443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=94.96  E-value=0.21  Score=38.26  Aligned_cols=59  Identities=15%  Similarity=0.136  Sum_probs=45.8

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCC-CchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPE-PEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI   64 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv-~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~   64 (103)
                      .+.|+..+...|...-...+...|. ..+...|+.+..+++.+.+-+.+.+++.|..|..
T Consensus       300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~  359 (393)
T PRK09705        300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNY  359 (393)
T ss_pred             HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            4567777788888777777755543 3367889999999999999999999999887754

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=94.94  E-value=0.31  Score=36.65  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=51.5

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hhhc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TLII   84 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~f~   84 (103)
                      .+.|+. ++..|.......+...|...+...|+.....++.+++-+.+.+.+.+..+-.+..+....+.+++.++ ..+.
T Consensus       115 ~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (408)
T PRK09874        115 ALLGLL-GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCI  193 (408)
T ss_pred             HHHHHh-hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445654 45678777777786555445778888888888888888888887776655444444444444444443 3444


Q ss_pred             CC
Q psy1755          85 PP   86 (103)
Q Consensus        85 k~   86 (103)
                      |+
T Consensus       194 ~~  195 (408)
T PRK09874        194 RE  195 (408)
T ss_pred             cc
Confidence            44

>PRK15011 sugar efflux transporter B; Provisional

Probab=94.91  E-value=0.44  Score=36.37  Aligned_cols=69  Identities=14%  Similarity=0.134  Sum_probs=48.2

Q ss_pred             hHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcC
Q psy1755          16 LPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIP   85 (103)
Q Consensus        16 ~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k   85 (103)
                      .+.+.-...|+ .|...+...++.+...++.+.+-..+.+.+.+..|-.+..+....+.++++++..+.|
T Consensus       323 ~~~~~~~~~~~-~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  391 (393)
T PRK15011        323 GGIGMLYFQDL-MPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIK  391 (393)
T ss_pred             HHHHHHHHHHh-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            34444555674 4767888999998889999988888888888766543444444556666666666665

>PRK12307 putative sialic acid transporter; Provisional

Probab=94.83  E-value=0.48  Score=36.05  Aligned_cols=58  Identities=16%  Similarity=0.060  Sum_probs=43.5

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG   62 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~   62 (103)
                      -.+.|+..+..+|...-+..|...|..-+...|+.....++..++...+.+.+.+..+
T Consensus       113 r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~  170 (426)
T PRK12307        113 RFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG  170 (426)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence            3567888888999999999995544444788888888888888777777666665544

>PRK03893 putative sialic acid transporter; Provisional

Probab=94.77  E-value=0.15  Score=39.69  Aligned_cols=58  Identities=12%  Similarity=0.003  Sum_probs=40.9

Q ss_pred             HhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHH
Q psy1755          10 FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVAN   67 (103)
Q Consensus        10 ~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~   67 (103)
                      ++..+..++..-+..|...+...+...|+.+..+++++.+-+.+.+.+.++.|..+..
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~  435 (496)
T PRK03893        378 MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTAL  435 (496)
T ss_pred             HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHH
Confidence            3333444455556677655555688889999999999998899999888887754433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=94.74  E-value=0.15  Score=37.26  Aligned_cols=71  Identities=17%  Similarity=0.123  Sum_probs=51.6

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALV   75 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~   75 (103)
                      ..+.|++.+...+...-+..|..-|...++..|+.+...++.+.+-+.+.+.+.+..|-.+..+....+.+
T Consensus       302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~  372 (377)
T TIGR00890       302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFAL  372 (377)
T ss_pred             HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Confidence            34567777777777777888866566668999999999999999999999988877664333333333333

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=94.73  E-value=0.18  Score=39.56  Aligned_cols=79  Identities=15%  Similarity=0.124  Sum_probs=52.6

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCC
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPP   86 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~   86 (103)
                      +.|+..+...|...-+..+ .||...+...|+......+++.+.+.+.+.+.+..|-.+.-+....+.+++.+.+++.++
T Consensus       117 l~G~~~~~~~~~~~~~~~~-~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       117 ITGLGLAFNFQPSLTMLGK-YFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             HHHhcchhhhhHHHHHHHH-HHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4566666655666666667 567666899999999999999888888888877666444444444444444444445443

>KOG2504|consensus

Probab=94.73  E-value=0.029  Score=45.68  Aligned_cols=84  Identities=18%  Similarity=0.170  Sum_probs=67.9

Q ss_pred             hHHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHH
Q psy1755           2 SLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI-VANIALCLALVLGTLL   80 (103)
Q Consensus         2 av~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~il   80 (103)
                      .+.|.++|++.+....+..+...|+-=+..-+.+-|++..+..++.++-+.+.+++.|..++. ....+...+.+++..+
T Consensus       392 ~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~  471 (509)
T KOG2504|consen  392 IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL  471 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence            467889999999999999999999876767799999999999999999999999888877763 2344445566666666


Q ss_pred             HhhcC
Q psy1755          81 TLIIP   85 (103)
Q Consensus        81 ~~f~k   85 (103)
                      +++.+
T Consensus       472 ~~~~~  476 (509)
T KOG2504|consen  472 LLILR  476 (509)
T ss_pred             HHHhH
Confidence            66666

>PRK03545 putative arabinose transporter; Provisional

Probab=94.70  E-value=0.51  Score=35.77  Aligned_cols=81  Identities=9%  Similarity=-0.086  Sum_probs=54.3

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      ...+.|+......|.......|. +|...+...|+.+...++...+-..+.+++.++.|-....+....+..++.+...+
T Consensus       300 ~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        300 LSIFWGIAIMCIGLAMQVKVLKL-APDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence            34455666555556555566664 57555667788888888888888888888888887766666666666666655444


Q ss_pred             cC
Q psy1755          84 IP   85 (103)
Q Consensus        84 ~k   85 (103)
                      ..
T Consensus       379 ~~  380 (390)
T PRK03545        379 IF  380 (390)
T ss_pred             Hc
Confidence            43

>PTZ00207 hypothetical protein; Provisional

Probab=94.70  E-value=0.29  Score=40.77  Aligned_cols=55  Identities=5%  Similarity=0.046  Sum_probs=44.1

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT   59 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~   59 (103)
                      ...+.|+..+...+...-...+ -||...+...|++....++.++++..+...+..
T Consensus       126 ~r~l~G~G~~~~~~~~~~~i~~-~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        126 YNGLMTLGCMLFDLGAVVTVLS-VFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677777777777777777 689888999999999999999988888776654

>PRK03893 putative sialic acid transporter; Provisional

Probab=94.69  E-value=0.43  Score=37.17  Aligned_cols=61  Identities=15%  Similarity=0.062  Sum_probs=45.5

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI   64 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~   64 (103)
                      ...+.|++.++..|...-+..|...+..-+...|+.....++.+.+-+.+.+.+.+..+-.
T Consensus       114 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  174 (496)
T PRK03893        114 ARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR  174 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            3456788888888998889999655544467778888888888888887877777655533

>PRK12307 putative sialic acid transporter; Provisional

Probab=94.54  E-value=0.35  Score=36.85  Aligned_cols=56  Identities=16%  Similarity=0.014  Sum_probs=40.7

Q ss_pred             hHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHH
Q psy1755          16 LPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALC   71 (103)
Q Consensus        16 ~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~   71 (103)
                      .++...+..|...|...++..|+....+++.+.+-+.+.+++.+..|..+..++..
T Consensus       339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~  394 (426)
T PRK12307        339 GGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIV  394 (426)
T ss_pred             hHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            34444566785555556899999999999999999999999888777544434333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=94.51  E-value=0.11  Score=41.00  Aligned_cols=81  Identities=16%  Similarity=0.071  Sum_probs=46.9

Q ss_pred             HHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch-hHHHHHHHHHHHHHHHHHhhcCC
Q psy1755           8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD-IVANIALCLALVLGTLLTLIIPP   86 (103)
Q Consensus         8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~il~~f~k~   86 (103)
                      +|++.....+..+-+..| ..|..-++..|+.+..+++.+++...+.+  .+..+. .+..++..++.+++.++.++.|.
T Consensus       358 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~  434 (476)
T PLN00028        358 FSIFVQAACGATFGIVPF-VSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPVAFIHF  434 (476)
T ss_pred             HHHHHHHhhhhhcccCcc-cChhhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHHHheec
Confidence            344333333333333444 24555578899998888888888776654  112222 23444455667777777777765


Q ss_pred             cchhh
Q psy1755          87 DLRRQ   91 (103)
Q Consensus        87 ~~kR~   91 (103)
                      ..++.
T Consensus       435 ~~~~~  439 (476)
T PLN00028        435 PQWGG  439 (476)
T ss_pred             cchhh
Confidence            44444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=94.50  E-value=0.31  Score=37.31  Aligned_cols=80  Identities=14%  Similarity=0.032  Sum_probs=50.0

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCC
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPP   86 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~   86 (103)
                      +.|++.+...|.......|.+-|...+...++.....++...+-+.+.+.+.+..+..|..+......+++.++...+++
T Consensus       119 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  198 (417)
T PRK10489        119 WDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPA  198 (417)
T ss_pred             HHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence            34555555556666666675544444677788888888888777777777776555545555444555555555555544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=94.50  E-value=0.15  Score=39.64  Aligned_cols=79  Identities=13%  Similarity=0.124  Sum_probs=54.9

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc-chhHHHHHHHHHHHHHHHHHhh
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF-GDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      -.+.|+..++..|...-+..|...|..-+...|+.....++.+++-+.+.+.+.+.. +-.+..++.....++..+++++
T Consensus       138 r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~  217 (465)
T TIGR00894       138 RVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFV  217 (465)
T ss_pred             HHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHH
Confidence            356788889999999999999554445588999999999999998888888887663 4333333333333333344433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=94.49  E-value=0.5  Score=35.92  Aligned_cols=80  Identities=14%  Similarity=0.055  Sum_probs=48.1

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCch-hHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh-
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEG-TSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI-   83 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~-~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f-   83 (103)
                      .+.|+..+...|...-...|. +|..+. ...|+....+++.+.+-+.+.+.+.+..+-.+..++.+.+.+++.+...+ 
T Consensus       109 ~l~G~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~  187 (406)
T PRK15402        109 FLQGIGLCFIGAVGYAAIQES-FEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRA  187 (406)
T ss_pred             HHHHhHhhhHHHHHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHh
Confidence            445666666778888777885 565553 44566666666666666666666666555445555555555555544333 


Q ss_pred             cCC
Q psy1755          84 IPP   86 (103)
Q Consensus        84 ~k~   86 (103)
                      .|+
T Consensus       188 ~~~  190 (406)
T PRK15402        188 MPE  190 (406)
T ss_pred             CCC
Confidence            443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=94.46  E-value=0.5  Score=36.04  Aligned_cols=88  Identities=15%  Similarity=0.064  Sum_probs=54.9

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhc-------CCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc--------hh---HH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELT-------YPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG--------DI---VA   66 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~t-------yPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~--------~~---~~   66 (103)
                      ..+.|+..+...|...-+..|+.       -+..++...|+.+...++.+.+-..+.+++.+..|        +.   ..
T Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~  397 (437)
T TIGR00792       318 IILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGI  397 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHH
Confidence            35566666666777666666643       13457888999999999998888888887765322        10   11


Q ss_pred             H----HHHHHHHHHHHHHHh-hcCCcchhhh
Q psy1755          67 N----IALCLALVLGTLLTL-IIPPDLRRQA   92 (103)
Q Consensus        67 ~----~~~~~~~~~~~il~~-f~k~~~kR~~   92 (103)
                      .    +..+.+.+++.++.. ++|.+-||.+
T Consensus       398 ~~~~~~~p~i~~~~~~~~~~~~y~l~~~~~~  428 (437)
T TIGR00792       398 KILMFAVPALFLLLAAIIIGRFYKLTEKKHA  428 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHeeCcHHHHH
Confidence            1    122345566666665 7777655544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=94.38  E-value=0.28  Score=39.02  Aligned_cols=83  Identities=12%  Similarity=0.035  Sum_probs=53.5

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCC---chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEP---EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTL   82 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~---e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~   82 (103)
                      .+.|+..+...|..--+..+...+.+   .+...++.....|+++++-+.+.+++.++.|-.+.-...+..++++.+..+
T Consensus       110 ~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~  189 (475)
T TIGR00924       110 GTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFF  189 (475)
T ss_pred             HHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            34566666677777777777443322   344678889999999999888988888776643343333444445555555


Q ss_pred             hcCCcc
Q psy1755          83 IIPPDL   88 (103)
Q Consensus        83 f~k~~~   88 (103)
                      +.++++
T Consensus       190 ~~~~~~  195 (475)
T TIGR00924       190 AGRHML  195 (475)
T ss_pred             Hccccc
Confidence            556554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=94.33  E-value=0.48  Score=35.95  Aligned_cols=33  Identities=9%  Similarity=-0.199  Sum_probs=24.1

Q ss_pred             CchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755          31 PEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD   63 (103)
Q Consensus        31 ~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~   63 (103)
                      +|..+.+..+...++++.+-+.+.+++.|..+.
T Consensus       321 ~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~  353 (382)
T PRK10091        321 GELLGAAGGQIAFNLGSAIGAYCGGMMLTLGLA  353 (382)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHcccC
Confidence            566666555677788888888888888886544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=94.25  E-value=0.64  Score=36.04  Aligned_cols=81  Identities=10%  Similarity=-0.001  Sum_probs=50.1

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCC-CchhHHHHHHHHhhhhHHHHHHHHHhhhccc-chhHHHHHHHHHHHHH-HHHHh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPE-PEGTSSGLLNASAQVFGILFTVVYGQLFTAF-GDIVANIALCLALVLG-TLLTL   82 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv-~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~-~~~~~~~~~~~~~~~~-~il~~   82 (103)
                      .+.|++.+...|.......|. +|. ..+...|+.+...++.+.+...+.+...+.. +-.+..+......++. .+.++
T Consensus       126 ~l~g~~~g~~~~~~~~~i~~~-~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~  204 (438)
T TIGR00712       126 FLNGWFQGMGWPPCGRTMVHW-WSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFA  204 (438)
T ss_pred             HHHHHHhhcchHHHHHHHHHh-cCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            356777777788888888884 554 4588999999999998888777666544332 2122223323333333 34455


Q ss_pred             hcCCc
Q psy1755          83 IIPPD   87 (103)
Q Consensus        83 f~k~~   87 (103)
                      ++|++
T Consensus       205 ~~~~~  209 (438)
T TIGR00712       205 MMRDT  209 (438)
T ss_pred             hccCC
Confidence            55553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=94.15  E-value=0.23  Score=38.62  Aligned_cols=76  Identities=14%  Similarity=0.208  Sum_probs=46.4

Q ss_pred             HHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc-hhHHH--HHHHHHHHHHHHHHhhcC
Q psy1755           9 SFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG-DIVAN--IALCLALVLGTLLTLIIP   85 (103)
Q Consensus         9 G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~-~~~~~--~~~~~~~~~~~il~~f~k   85 (103)
                      |++.+...+.....+.|. -|..-++..|+.+..+++.+++.+.+.+++.++.+ ..|..  .+..+..+++.++..+++
T Consensus       372 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       372 NAVSSGPLAGVLINSLDL-APRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             HHHhhhhhhhhhhchhhc-ChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            333333445444455554 36567999999999999999999999998876542 11322  222344455555544443

>PRK15075 citrate-proton symporter; Provisional

Probab=94.13  E-value=0.5  Score=36.59  Aligned_cols=57  Identities=21%  Similarity=0.150  Sum_probs=38.5

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhh-hHHHHHHHHHhhhcccch
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQV-FGILFTVVYGQLFTAFGD   63 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi-~g~i~~~i~~~l~~~~~~   63 (103)
                      +.|++.+...|...-...|...|..-++..|+.+..++. +|.+.+.+.+++.+..|.
T Consensus       340 ~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        340 WLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD  397 (434)
T ss_pred             HHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence            345555555566666778865444456777776666666 488888899988887764

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=94.07  E-value=0.12  Score=37.85  Aligned_cols=83  Identities=14%  Similarity=0.021  Sum_probs=49.8

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHH-HHHhhhcccchhHHHHHHHHHHHH-HHHHHh
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTV-VYGQLFTAFGDIVANIALCLALVL-GTLLTL   82 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~-i~~~l~~~~~~~~~~~~~~~~~~~-~~il~~   82 (103)
                      -.+.|++.+...|...-+..|..-+...+...|+.....++++.+... +...+.+..+-.+..+....+..+ +.+.++
T Consensus        90 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (379)
T TIGR00881        90 WALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFL  169 (379)
T ss_pred             HHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence            356788888888998889999543333467778888888888877773 433344444433444433333333 334444


Q ss_pred             hcCCc
Q psy1755          83 IIPPD   87 (103)
Q Consensus        83 f~k~~   87 (103)
                      +.|++
T Consensus       170 ~~~~~  174 (379)
T TIGR00881       170 LLRDS  174 (379)
T ss_pred             eeCCC
Confidence            55543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=94.05  E-value=0.3  Score=39.15  Aligned_cols=59  Identities=10%  Similarity=-0.006  Sum_probs=42.0

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchh---HHHHHHHHhhhhHHHHHHHHHhhhcccchhH
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGT---SSGLLNASAQVFGILFTVVYGQLFTAFGDIV   65 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~---ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~   65 (103)
                      .+.|+..+...|...-+..| .||.++..   ..++.++..++++++-+.+.+++.++.|-.+
T Consensus       120 ~l~gig~g~~~~~~~~l~~~-~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~  181 (500)
T PRK09584        120 ATIAVGNGLFKANPSSLLST-CYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSV  181 (500)
T ss_pred             HHHHHhhhcccCCHHHHHHH-hcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence            34566666667777778888 46655433   4567788999999988899998887766433

>TIGR00898 2A0119 cation transport protein

Probab=94.03  E-value=0.54  Score=36.84  Aligned_cols=82  Identities=15%  Similarity=0.088  Sum_probs=46.8

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      .-.+.|+..++..|...-+..|...|..-+...++...+..++.++.+.+ .....+  -.+..+......++..+..++
T Consensus       186 ~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~~~~--wr~~~~~~~i~~~~~~~~~~~  262 (505)
T TIGR00898       186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLV-AYFIPD--WRWLQLAVSLPTFLFFLLSWF  262 (505)
T ss_pred             HHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHH-HHHhhH--HHHHHHHHHHHHHHHHHHHHh
Confidence            34678989999999999999996544334566666655544444444433 333322  112333333344445555566


Q ss_pred             cCCcc
Q psy1755          84 IPPDL   88 (103)
Q Consensus        84 ~k~~~   88 (103)
                      ++++.
T Consensus       263 ~~esp  267 (505)
T TIGR00898       263 VPESP  267 (505)
T ss_pred             cCCCh
Confidence            76643

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=94.02  E-value=0.93  Score=34.59  Aligned_cols=82  Identities=15%  Similarity=0.045  Sum_probs=48.7

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc-chhHHHHHHHHHHHHHHHHHhhc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF-GDIVANIALCLALVLGTLLTLII   84 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~il~~f~   84 (103)
                      .+.|++.....|..--+..|..-|..-+...++.....++..++-..+...+.+.. |-.+.-++.+...++.....++.
T Consensus       102 ~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~  181 (402)
T PRK11902        102 VLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWA  181 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            44577777788888888899754443466777777666666665566555555543 33333343344444444444556


Q ss_pred             CCc
Q psy1755          85 PPD   87 (103)
Q Consensus        85 k~~   87 (103)
                      |++
T Consensus       182 ~e~  184 (402)
T PRK11902        182 PEP  184 (402)
T ss_pred             CCC
Confidence            554

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=93.93  E-value=0.49  Score=34.06  Aligned_cols=80  Identities=23%  Similarity=0.166  Sum_probs=56.6

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII   84 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~   84 (103)
                      ..+.|+..+...|...-+..|..-+..-+...|+.....++++.+-+.+.+.+.+..+..+..+......+++.+...+.
T Consensus        94 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (352)
T cd06174          94 RFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL  173 (352)
T ss_pred             HHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888899989999966554558888999999999999998888888776654444444444444444443333

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09952 shikimate transporter; Provisional

Probab=93.90  E-value=0.71  Score=35.96  Aligned_cols=79  Identities=16%  Similarity=0.147  Sum_probs=50.0

Q ss_pred             HHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhh-hhHHHHHHHHHhhhcccchhH--HHHHHHHHHHHHHHHHhh
Q psy1755           8 RSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQ-VFGILFTVVYGQLFTAFGDIV--ANIALCLALVLGTLLTLI   83 (103)
Q Consensus         8 ~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~q-i~g~i~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~il~~f   83 (103)
                      .|+..+...+...-+..| .||... .+..|+.+..++ ++|.+-+.+.+++.+..+..|  .-.+.+.+.+++.+..++
T Consensus       353 ~~~~~~~~~~~~~~~~~e-~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        353 ANIAHDMVVCVQQPMFTE-MFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHHHHHHHHHHHHHHHHH-HCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            345555556766777788 566644 557777665555 788888999998877543323  233344556666666666


Q ss_pred             cCCc
Q psy1755          84 IPPD   87 (103)
Q Consensus        84 ~k~~   87 (103)
                      +|++
T Consensus       432 ~~~~  435 (438)
T PRK09952        432 MKDN  435 (438)
T ss_pred             cccc
Confidence            7653

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=93.87  E-value=0.5  Score=40.34  Aligned_cols=56  Identities=20%  Similarity=0.154  Sum_probs=42.5

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT   59 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~   59 (103)
                      .-.+.|++.++..|+..-+..|...|..-+...+++.++..+++++-..+..++.+
T Consensus       261 ~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~  316 (742)
T TIGR01299       261 CRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP  316 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999997655555778888888887777766665555544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15011 sugar efflux transporter B; Provisional

Probab=93.62  E-value=1.2  Score=33.95  Aligned_cols=81  Identities=20%  Similarity=0.132  Sum_probs=47.8

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCch--hHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hhh
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEG--TSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TLI   83 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~--~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~f   83 (103)
                      +.|.+.....|....+..+...+....  .-.|+.....++..++-+.+.+.+.++.|-.+.-+..+...++..++ +.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  193 (393)
T PRK15011        114 FLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLF  193 (393)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Confidence            345555567788888887754333322  23467777888888888888887777665443333334434444444 444


Q ss_pred             cCCc
Q psy1755          84 IPPD   87 (103)
Q Consensus        84 ~k~~   87 (103)
                      .|++
T Consensus       194 ~~~~  197 (393)
T PRK15011        194 LPSM  197 (393)
T ss_pred             cCcc
Confidence            5554

>PRK10054 putative transporter; Provisional

Probab=93.58  E-value=0.53  Score=36.16  Aligned_cols=74  Identities=5%  Similarity=-0.197  Sum_probs=43.7

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLT   81 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~   81 (103)
                      +.|.......|..-....|...|..-+...|+.....++++++-+.+.+++.+ .+-.+..+....+.+++.++.
T Consensus       105 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        105 LINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence            34444445566666666776544434666788999999988888888777653 332223333334444444443

>PRK11663 regulatory protein UhpC; Provisional

Probab=93.57  E-value=0.94  Score=35.13  Aligned_cols=81  Identities=20%  Similarity=0.226  Sum_probs=54.5

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCC-chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHH-HHHHHHhhc
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEP-EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALV-LGTLLTLII   84 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~-e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~-~~~il~~f~   84 (103)
                      +.|++.+...|....+..| .||.. -+...|+.+...++.+.+-+.+.+++.+..|-.+..+..+...+ .+.+..+++
T Consensus       120 l~g~~~g~~~~~~~~~~~~-~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~  198 (434)
T PRK11663        120 LNAFFQGWGWPVCAKLLTA-WYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRL  198 (434)
T ss_pred             HHHHHHHccchHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4577777778888888888 46654 48888999999999998888888888776664334333333322 333344455


Q ss_pred             CCcc
Q psy1755          85 PPDL   88 (103)
Q Consensus        85 k~~~   88 (103)
                      |++.
T Consensus       199 ~~~p  202 (434)
T PRK11663        199 RDKP  202 (434)
T ss_pred             CCCH
Confidence            6543

>PRK10504 putative transporter; Provisional

Probab=93.53  E-value=0.82  Score=35.45  Aligned_cols=55  Identities=11%  Similarity=-0.031  Sum_probs=39.7

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA   60 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~   60 (103)
                      .+.|+..+..+|...-+..+..-|..++...|+.+...++.+.+-+.+.+.+.+.
T Consensus       361 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~  415 (471)
T PRK10504        361 FLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL  415 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666677777777866667788999999988888877777777766543

>PRK11043 putative transporter; Provisional

Probab=93.48  E-value=1  Score=34.04  Aligned_cols=55  Identities=15%  Similarity=0.158  Sum_probs=43.9

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA   60 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~   60 (103)
                      ..+.|+..+..+|...-.+.|. .|...+...|+.+..++..+.....+.+.+.++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRP-FPQATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh-CcccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            3456777788888887777774 576678899999999888999888888888764

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=93.46  E-value=0.52  Score=37.84  Aligned_cols=84  Identities=12%  Similarity=0.070  Sum_probs=53.4

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCc---hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPE---GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTL   82 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e---~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~   82 (103)
                      .+.|+..+...|...-+..| .||.++   +..-++..+..|+.+++-+.+.+++.++.|-.+.-+.......++.+.+.
T Consensus       113 ~l~~ig~g~~~~~~~~li~~-~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~  191 (489)
T PRK10207        113 GTIAVGNGLFKANPASLLSK-CYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYF  191 (489)
T ss_pred             HHHHhccccccCCHHHHHHH-hcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence            44566667777888888888 566554   33567788899999888888888888777632332222223344444444


Q ss_pred             hcCCcchh
Q psy1755          83 IIPPDLRR   90 (103)
Q Consensus        83 f~k~~~kR   90 (103)
                      +.|+.+++
T Consensus       192 ~~~~~~~~  199 (489)
T PRK10207        192 ACRGMVKD  199 (489)
T ss_pred             Hcchhhcc
Confidence            55555543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=93.45  E-value=0.82  Score=36.24  Aligned_cols=82  Identities=12%  Similarity=-0.027  Sum_probs=54.5

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hhh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TLI   83 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~f   83 (103)
                      .+.|+..+...|.......+..+|..+ +...|+.....++...+-+.+.+++.+..|-.|.-+....+.++..++ ..+
T Consensus       102 ~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~  181 (495)
T PRK14995        102 ALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARY  181 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHh
Confidence            467888888888887777665445333 677888888888888888888888887766555544444444444433 333


Q ss_pred             cCCc
Q psy1755          84 IPPD   87 (103)
Q Consensus        84 ~k~~   87 (103)
                      .|++
T Consensus       182 l~~~  185 (495)
T PRK14995        182 VPRQ  185 (495)
T ss_pred             CCCC
Confidence            4443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.42  E-value=0.79  Score=36.25  Aligned_cols=76  Identities=25%  Similarity=0.368  Sum_probs=48.4

Q ss_pred             HHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc-------hhHHHHHHHHHH-HHHHHHHhhcCCcchh
Q psy1755          19 GFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG-------DIVANIALCLAL-VLGTLLTLIIPPDLRR   90 (103)
Q Consensus        19 ~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~-------~~~~~~~~~~~~-~~~~il~~f~k~~~kR   90 (103)
                      .+-+++|+..|..|++.-+++....|+.+.+--.+...+.+..+       +.|..+..+.+. ++..+++.+++++ +|
T Consensus       339 ~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~-~~  417 (433)
T PF03092_consen  339 SLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQ-KR  417 (433)
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCC-ch
Confidence            45679999999999999999999999888766666555543332       234444444333 4444444455554 55


Q ss_pred             hhhhh
Q psy1755          91 QAAHS   95 (103)
Q Consensus        91 ~~~e~   95 (103)
                      ...|.
T Consensus       418 ~~~~~  422 (433)
T PF03092_consen  418 ITDEL  422 (433)
T ss_pred             hhHHH
Confidence            44433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=93.41  E-value=0.85  Score=34.46  Aligned_cols=81  Identities=19%  Similarity=0.080  Sum_probs=45.9

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHH-HHHHhh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLG-TLLTLI   83 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~il~~f   83 (103)
                      .+.|+..+...|...++..| .+|..+ +...++.....++.+.+-+.+.+.+.+..|-.+..+.......+. .....+
T Consensus       104 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  182 (394)
T PRK11652        104 AIQGLGTGVGGVMARTLPRD-LYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARW  182 (394)
T ss_pred             HHHHhhhhHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHh
Confidence            45676666677777777777 455433 445566666666666666666666666555444444443333333 333444


Q ss_pred             cCCc
Q psy1755          84 IPPD   87 (103)
Q Consensus        84 ~k~~   87 (103)
                      .|++
T Consensus       183 ~~~~  186 (394)
T PRK11652        183 MPET  186 (394)
T ss_pred             CCcc
Confidence            5553

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=93.38  E-value=1.2  Score=34.52  Aligned_cols=46  Identities=7%  Similarity=-0.177  Sum_probs=33.1

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHH
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFT   51 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~   51 (103)
                      .+.|+..++..|...-+..|..-|..-+...|+......+++++-.
T Consensus       128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~  173 (479)
T PRK10077        128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVY  173 (479)
T ss_pred             HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHH
Confidence            5678888999999999999966555557777776665555554433

>TIGR00901 2A0125 AmpG-related permease

Probab=93.37  E-value=1.2  Score=33.07  Aligned_cols=56  Identities=14%  Similarity=-0.134  Sum_probs=40.2

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG   62 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~   62 (103)
                      +.|++.....|..--+..|.+-|..-+...|+.....+++.++-..+...+.+..+
T Consensus        92 ~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g  147 (356)
T TIGR00901        92 LIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF  147 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            45566666667777778897755555778888888888877777777766665554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=93.28  E-value=0.44  Score=38.25  Aligned_cols=92  Identities=13%  Similarity=-0.078  Sum_probs=58.0

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc------c-h---hHHHHHHHHHH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF------G-D---IVANIALCLAL   74 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~------~-~---~~~~~~~~~~~   74 (103)
                      -.+.|+--....|.++|++.+...|..-+..+|+.+...|+.+.+-..+.+......      . +   .+....++...
T Consensus       386 ~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  465 (489)
T PRK10207        386 YLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVT  465 (489)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHH
Confidence            345677777789999999999888877799999999888887777666665442111      1 1   11112223334


Q ss_pred             HHHHHHHhhcCCcchhhhhhhc
Q psy1755          75 VLGTLLTLIIPPDLRRQAAHSD   96 (103)
Q Consensus        75 ~~~~il~~f~k~~~kR~~~e~~   96 (103)
                      .++.+++++.++++||.-.++|
T Consensus       466 ~~~~v~~~~~~~~~~~~~~~~~  487 (489)
T PRK10207        466 LGVAVVMALMVPWLNRMINTPE  487 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc
Confidence            4444555555677777644433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=93.28  E-value=0.45  Score=37.82  Aligned_cols=86  Identities=13%  Similarity=-0.014  Sum_probs=55.2

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII   84 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~   84 (103)
                      ..+.|+--....|.+.++..|.+.|...+...|+......+.+.+-..+.+...+..+..+..-......+++.++..+.
T Consensus       388 ~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       388 YLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            34556666668899999999999888889999999888877777766666655444333222222233334444444455


Q ss_pred             CCcchh
Q psy1755          85 PPDLRR   90 (103)
Q Consensus        85 k~~~kR   90 (103)
                      +++.||
T Consensus       468 ~~~~~k  473 (475)
T TIGR00924       468 VPWLNR  473 (475)
T ss_pred             HHHHHh
Confidence            554444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=93.22  E-value=1.1  Score=34.49  Aligned_cols=75  Identities=15%  Similarity=0.064  Sum_probs=50.1

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL   80 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il   80 (103)
                      ..+.|+..+...|...-+..|...|..-+...|+.....++...+-+.+.+++. +.+-.+..++.+...++..++
T Consensus       106 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        106 CILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence            345676666667777777778666666688899999999999888888888877 444333334333333333333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=93.12  E-value=0.6  Score=35.39  Aligned_cols=76  Identities=17%  Similarity=0.178  Sum_probs=45.8

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      .+.|++.+...|..--++.+.  +.+.+..-|.....+.+...+-+.+.+.+.++.|-...-+..+...++..++.++
T Consensus       102 ~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~  177 (382)
T PRK11128        102 GLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLL  177 (382)
T ss_pred             HHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHc
Confidence            446777777888755454443  3344555677777778888888888887777766544444444333333333333

>PRK10504 putative transporter; Provisional

Probab=93.12  E-value=0.78  Score=35.58  Aligned_cols=79  Identities=15%  Similarity=0.065  Sum_probs=52.7

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      -.+.|+..+...|...-...|. +|..+ +...|+.....++.+.+-+.+.+.+.+..|-.|..+....+..++.++...
T Consensus       105 ~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~  183 (471)
T PRK10504        105 RVLQGVGGAMMVPVGRLTVMKI-VPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLM  183 (471)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888888899988888885 45333 677888888888888888888888877665434433333333444444333


Q ss_pred             c
Q psy1755          84 I   84 (103)
Q Consensus        84 ~   84 (103)
                      .
T Consensus       184 ~  184 (471)
T PRK10504        184 L  184 (471)
T ss_pred             h
Confidence            3

>PRK10133 L-fucose transporter; Provisional

Probab=93.06  E-value=0.6  Score=36.65  Aligned_cols=56  Identities=23%  Similarity=0.154  Sum_probs=46.1

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG   62 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~   62 (103)
                      ..+.|++.+.++|..+-.+.|. +|...++.++++.+ ..+++.+.+.+.+.+.+..|
T Consensus       354 ~~l~glg~~~i~P~~~s~a~~~-~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g  409 (438)
T PRK10133        354 LTLCSAFMSIQYPTIFSLGIKN-LGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc-cchhhccchhHHhH-HhccchHHHHHHHHHHHhcc
Confidence            4578999999999999999995 66666888888864 44678889999998888776

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=93.05  E-value=0.98  Score=34.33  Aligned_cols=58  Identities=12%  Similarity=-0.028  Sum_probs=37.7

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI   64 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~   64 (103)
                      .+.|+..+...|...... ....|...+...++.+...++.+.+-..+.+++.+..+..
T Consensus       317 ~~~g~g~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~  374 (406)
T PRK15402        317 SLYAFGIGLANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNG  374 (406)
T ss_pred             HHHHHHHHHHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Confidence            344544444555544443 3345667788999988888888777777777776665653

>PRK10091 MFS transport protein AraJ; Provisional

Probab=92.98  E-value=1.1  Score=33.99  Aligned_cols=81  Identities=10%  Similarity=0.015  Sum_probs=47.0

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hh
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TL   82 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~   82 (103)
                      -.+.|+..+...|...-...|. +|.++ +...|+.....++.+.+-+.+.+++.+..+-.+..+..+....+..+. ..
T Consensus        98 r~l~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091         98 RLVSGFPHGAFFGVGAIVLSKI-IKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHh-CChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777777776666664 44433 456777777777777776777676666555444444444333333333 33


Q ss_pred             hcCC
Q psy1755          83 IIPP   86 (103)
Q Consensus        83 f~k~   86 (103)
                      +.++
T Consensus       177 ~lp~  180 (382)
T PRK10091        177 WVPD  180 (382)
T ss_pred             hCCC
Confidence            3444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=92.88  E-value=0.73  Score=37.53  Aligned_cols=74  Identities=14%  Similarity=0.113  Sum_probs=47.7

Q ss_pred             hhHHHHHHHHhhcCCCC---chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcch
Q psy1755          15 YLPVGFELAAELTYPEP---EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLR   89 (103)
Q Consensus        15 ~~Pi~lEla~E~tyPv~---e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~k   89 (103)
                      ..|..--+..| .||.+   .+...++....+|+++++-+.+.+++.++.|-.+..........++.+..++.++.++
T Consensus       117 ~~~~~~alv~e-lfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~  193 (493)
T PRK15462        117 FKSNVSCLLGE-LYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFT  193 (493)
T ss_pred             ccccHHHHHHH-HCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            33544556778 56654   4667889999999999999999999887776444433333334445444444444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=92.84  E-value=0.68  Score=35.17  Aligned_cols=60  Identities=18%  Similarity=0.261  Sum_probs=45.0

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHH
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVAN   67 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~   67 (103)
                      .+.|.+.++..|...-++.+  ++...+..-|.+...+.++.++-+.+.+++.+..|-.+..
T Consensus       102 ~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f  161 (382)
T TIGR00902       102 GLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNIL  161 (382)
T ss_pred             HHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHH
Confidence            34677777888887777765  4455577788999999998888888888888876654433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=92.79  E-value=1.4  Score=33.34  Aligned_cols=53  Identities=21%  Similarity=0.138  Sum_probs=41.3

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT   59 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~   59 (103)
                      .+.|+..+...|.....+.| ..|...++.+++.+...++++.+-..+.+.+..
T Consensus       307 ~~~~~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        307 ALFFFGAGMLFPLATSGAME-PFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-hccccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            45566667788999998988 457778999999999988888887777765543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=92.74  E-value=0.21  Score=40.42  Aligned_cols=87  Identities=23%  Similarity=0.213  Sum_probs=57.4

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHH-HHhhhcccchhHHHHHHHHHHHHHHHHH
Q psy1755           3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVV-YGQLFTAFGDIVANIALCLALVLGTLLT   81 (103)
Q Consensus         3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i-~~~l~~~~~~~~~~~~~~~~~~~~~il~   81 (103)
                      ++...+||+..+-.=+.=-.|+|+..--.-++++|+.-.++-++|.++--. .+++.|+.|=....+++.++.+++.++.
T Consensus       351 ~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         351 ILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence            455678998776555555578999988899999999999999977765332 3444555443345566655555555443


Q ss_pred             -hhcCCcch
Q psy1755          82 -LIIPPDLR   89 (103)
Q Consensus        82 -~f~k~~~k   89 (103)
                       .+.+.+-|
T Consensus       431 ~~~~~~~~~  439 (448)
T COG2271         431 LPVWNAEER  439 (448)
T ss_pred             HHHHhhcch
Confidence             33444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=92.68  E-value=1.1  Score=34.43  Aligned_cols=80  Identities=18%  Similarity=0.039  Sum_probs=49.4

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-HHhhcC
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTL-LTLIIP   85 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i-l~~f~k   85 (103)
                      +.|+.... .+...-..+|...|...+...|+.....++++.+-..+..++.++.|-.+..+......++..+ ...++|
T Consensus        88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903        88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44555543 4444555678666655588899999888888888877777777665544444444444434333 444566


Q ss_pred             Cc
Q psy1755          86 PD   87 (103)
Q Consensus        86 ~~   87 (103)
                      ++
T Consensus       167 ~~  168 (368)
T TIGR00903       167 AL  168 (368)
T ss_pred             CC
Confidence            54

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00896 CynX cyanate transporter

Probab=92.18  E-value=1.4  Score=32.71  Aligned_cols=59  Identities=14%  Similarity=-0.035  Sum_probs=35.7

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHH
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVA   66 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~   66 (103)
                      +.|+..+...+.......| .+|...+...|+.....++.+.+-..+...+.+..+..|.
T Consensus        96 ~~g~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~  154 (355)
T TIGR00896        96 LIGVGIAIINVLLPSLIKR-DFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQ  154 (355)
T ss_pred             HHHHHHHHHhccchHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            4455555444444444555 6676557788888887777777666666666554443343

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=92.15  E-value=1.8  Score=33.40  Aligned_cols=54  Identities=13%  Similarity=0.012  Sum_probs=41.9

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT   59 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~   59 (103)
                      .+.|++.++..|....+..|...|...+...|+.+....+++++-..+.+.+.+
T Consensus       104 ~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  157 (412)
T TIGR02332       104 ILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA  157 (412)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567999999999999999995444445788899888888877777777776654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=92.14  E-value=1.2  Score=38.69  Aligned_cols=83  Identities=17%  Similarity=0.099  Sum_probs=60.2

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      ...+.|++.....|...-+..+...+..-+...|+..+..++..++-+.+.+++.+..+..+..+....+.+++.++..+
T Consensus       114 ~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1140)
T PRK06814        114 ALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLF  193 (1140)
T ss_pred             HHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhh
Confidence            45667888888999999999997777666889999999999999999999998887655433332223333444444555


Q ss_pred             cCC
Q psy1755          84 IPP   86 (103)
Q Consensus        84 ~k~   86 (103)
                      +++
T Consensus       194 ~~~  196 (1140)
T PRK06814        194 IPK  196 (1140)
T ss_pred             CCC
Confidence            544

>TIGR00897 2A0118 polyol permease family

Probab=92.10  E-value=1.6  Score=33.38  Aligned_cols=57  Identities=12%  Similarity=-0.075  Sum_probs=35.4

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHH-HHHHHHHhhhcccch
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGI-LFTVVYGQLFTAFGD   63 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~-i~~~i~~~l~~~~~~   63 (103)
                      +.|+......|...-...+...|..-+...|+.....++... +-+.+.+.+.+..|.
T Consensus       114 i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~  171 (402)
T TIGR00897       114 IRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE  171 (402)
T ss_pred             HHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence            345555555555555566755565568888888888777653 345555566665553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=92.03  E-value=1.6  Score=34.37  Aligned_cols=81  Identities=21%  Similarity=0.302  Sum_probs=57.6

Q ss_pred             HHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHH-hhhhHHHHHHHHHhhhcccchh----H-HHHHHHHH--HHHHHH
Q psy1755           8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNAS-AQVFGILFTVVYGQLFTAFGDI----V-ANIALCLA--LVLGTL   79 (103)
Q Consensus         8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~-~qi~g~i~~~i~~~l~~~~~~~----~-~~~~~~~~--~~~~~i   79 (103)
                      -|+......+.+..+..|.+.|.-.++..|+.... .++++.+-..+.|++.|+.|..    | ..|...++  +....+
T Consensus       311 hG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~  390 (400)
T PF03825_consen  311 HGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL  390 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            47777778899999999988888889999998875 4677777788899999887743    2 22322222  233345


Q ss_pred             HHhhcCCcc
Q psy1755          80 LTLIIPPDL   88 (103)
Q Consensus        80 l~~f~k~~~   88 (103)
                      .++++|++-
T Consensus       391 f~~~fk~~~  399 (400)
T PF03825_consen  391 FVILFKPKH  399 (400)
T ss_pred             HHhhccCCC
Confidence            566677764

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=91.94  E-value=2.2  Score=32.53  Aligned_cols=80  Identities=18%  Similarity=0.195  Sum_probs=47.5

Q ss_pred             HHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcc
Q psy1755           9 SFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDL   88 (103)
Q Consensus         9 G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~   88 (103)
                      |+......+....+..+ .+|   ++.-++.....++.+++...+.+.+.|..|-.+.......+..+++++....+.+-
T Consensus       318 g~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~~~  393 (402)
T PRK11902        318 GMGTAAFVALLMALCNR-SFS---ATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMRGTI  393 (402)
T ss_pred             HHHHHHHHHHHHHhcCC-CCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            34444555555556555 455   33445555555666666666778888887765555555556666666665555555


Q ss_pred             hhhh
Q psy1755          89 RRQA   92 (103)
Q Consensus        89 kR~~   92 (103)
                      ||.|
T Consensus       394 ~~~~  397 (402)
T PRK11902        394 GRYE  397 (402)
T ss_pred             cccc
Confidence            5533

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=91.81  E-value=2.5  Score=33.50  Aligned_cols=49  Identities=12%  Similarity=-0.031  Sum_probs=37.1

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHH
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVY   54 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~   54 (103)
                      .+.|+..+...|...-+..|...|..-+...++...+.+++.++-..+.
T Consensus       123 ~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~  171 (502)
T TIGR00887       123 FWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA  171 (502)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999966666668888888777766654444443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=91.64  E-value=1.9  Score=33.07  Aligned_cols=55  Identities=22%  Similarity=0.172  Sum_probs=44.2

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA   60 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~   60 (103)
                      .+.|+......|...-+..|...|..-+...|++....++..++-+.+.+++.+.
T Consensus        96 ~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~  150 (393)
T PRK11195         96 GLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP  150 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999999976665568889998888887777777777777653

>PRK03699 putative transporter; Provisional

Probab=91.63  E-value=2.2  Score=32.50  Aligned_cols=54  Identities=13%  Similarity=0.196  Sum_probs=37.1

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTA   60 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~   60 (103)
                      .+.|++.+...|...-...|. +|..+ +...++.....++.+.+.+.+.+++.++
T Consensus       103 ~l~G~~~g~~~~~~~~~i~~~-~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  157 (394)
T PRK03699        103 FVLGVVSGITMSIGTFLITHV-YEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR  157 (394)
T ss_pred             HHHHHhhHhhccchhHHhhhh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456777777777777777884 46544 5556666677777788888777776543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=91.58  E-value=1.1  Score=36.03  Aligned_cols=44  Identities=14%  Similarity=-0.037  Sum_probs=32.9

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGI   48 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~   48 (103)
                      ..+.|+.-....|+++++..+.+.|.-.+...|+.....-+.+.
T Consensus       389 ~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~  432 (500)
T PRK09584        389 YGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAL  432 (500)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            35567777889999999999999998889998855433333333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=91.48  E-value=3.4  Score=30.51  Aligned_cols=50  Identities=18%  Similarity=0.197  Sum_probs=39.0

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQ   56 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~   56 (103)
                      .+.|+......|...-...| .+|..-++..++.+...+..|.+...+.+.
T Consensus       308 ~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~  357 (385)
T TIGR00710       308 MFVGIGNSMISSIAMAYALE-DFPHVAGTASALFGTLRLVLGAIVGYLVSL  357 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-cCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666677788888888888 467666888999998888888888887773

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=91.38  E-value=3.2  Score=30.45  Aligned_cols=49  Identities=18%  Similarity=0.074  Sum_probs=31.1

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHH
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVY   54 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~   54 (103)
                      .+.|+..+...|...-+..|...+..-+...++......++.++-..+.
T Consensus       104 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~  152 (394)
T TIGR00883       104 LIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTV  152 (394)
T ss_pred             HHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666777777778888865554446667776666665555444443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=90.69  E-value=0.73  Score=33.56  Aligned_cols=58  Identities=14%  Similarity=-0.136  Sum_probs=46.0

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF   61 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~   61 (103)
                      ...+.|++.+...|....+..|..-|...+...|+.+...++.+.+-+.+.+.+.|..
T Consensus       307 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       307 LWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4456788888888888888888766666688889999999988888888888777654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=90.56  E-value=2.9  Score=33.37  Aligned_cols=85  Identities=21%  Similarity=0.112  Sum_probs=61.3

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCC
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPP   86 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~   86 (103)
                      +.|+...+..+...--.+| .-|...+...++.....|+.-.+=-.+-+.+.++.|-...-|.-....+++..+.+..+.
T Consensus       309 ~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         309 LWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3555555555555555555 668888999999999999988777777777888877666666666677777777777777


Q ss_pred             cchhhh
Q psy1755          87 DLRRQA   92 (103)
Q Consensus        87 ~~kR~~   92 (103)
                      ++||++
T Consensus       388 ~~~~~~  393 (394)
T COG2814         388 KDRRTA  393 (394)
T ss_pred             cccccC
Confidence            766653

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=90.45  E-value=1.6  Score=33.62  Aligned_cols=56  Identities=18%  Similarity=-0.003  Sum_probs=42.2

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG   62 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~   62 (103)
                      +.|.......|...-+..|...|...+...|+.+...++++.+-+.+.+++.++.+
T Consensus       306 l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        306 LFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence            34444555567767777787767777999999999888888888888888877643

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=90.45  E-value=0.76  Score=33.58  Aligned_cols=58  Identities=28%  Similarity=0.280  Sum_probs=45.1

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG   62 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~   62 (103)
                      ..+.|++..+..+...-...|...|...++..|+.+..+++++.+-+.+.+.+.++.|
T Consensus       317 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  374 (379)
T TIGR00881       317 LFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG  374 (379)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence            3456766666666666778887666666999999999999999998888888887655

>TIGR00891 2A0112 putative sialic acid transporter

Probab=90.30  E-value=0.86  Score=33.84  Aligned_cols=58  Identities=10%  Similarity=0.075  Sum_probs=47.3

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD   63 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~   63 (103)
                      .+.|++..+..++...+..|..-|...++..|+.+..+++.+.+-+.+.+++.++.|.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~  393 (405)
T TIGR00891       336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDE  393 (405)
T ss_pred             HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4556677777777777888966555568999999999999999999999999988775

>PRK10054 putative transporter; Provisional

Probab=89.64  E-value=3.4  Score=31.69  Aligned_cols=76  Identities=17%  Similarity=0.116  Sum_probs=48.0

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLT   81 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~   81 (103)
                      ..+.|+......|....+..+...|...++..|..+ .++++..+-+.+.+.+.|+.|.....+.+.++..+..++.
T Consensus       305 ~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        305 AAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence            344555555567777777778776665566655443 5557778888888888888776555554444444444433

>PRK12382 putative transporter; Provisional

Probab=89.57  E-value=5.5  Score=30.01  Aligned_cols=57  Identities=14%  Similarity=-0.045  Sum_probs=39.0

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG   62 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~   62 (103)
                      .+.|+......|.......|...|...+...|+.....+....+-+.+.+.+.+..|
T Consensus       120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (392)
T PRK12382        120 LILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG  176 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            356666666777777778887766666778888777666666666666666655544

>TIGR01272 gluP glucose/galactose transporter

Probab=89.47  E-value=5.6  Score=29.80  Aligned_cols=55  Identities=13%  Similarity=-0.109  Sum_probs=44.9

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT   59 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~   59 (103)
                      ..+.|.-.....+...=+.+.+.-|...+..-+++..+..++.++-+.+.+.+..
T Consensus        17 ~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~   71 (310)
T TIGR01272        17 LFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLIL   71 (310)
T ss_pred             HHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            3456666777888888888998877777888899999999999999999988774

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=89.32  E-value=5.2  Score=30.53  Aligned_cols=56  Identities=13%  Similarity=-0.097  Sum_probs=39.8

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF   61 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~   61 (103)
                      -.+.|+..+...|....+..| .||...+...|+........+.+-..+.+.+.++.
T Consensus       104 r~l~Gig~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~  159 (393)
T PRK09705        104 ALLGGVGIGIIQAVMPSVIKR-RFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHS  159 (393)
T ss_pred             HHHHHhHHHHHhhhhhHHHHH-HccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356788888888888888777 57855577888877766666666666666666554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=89.31  E-value=4.9  Score=31.05  Aligned_cols=73  Identities=19%  Similarity=0.103  Sum_probs=41.1

Q ss_pred             hHHHHHHHHhhcCCCCchhHHHHHHHHhhhh-HHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHHHhhcCCcch
Q psy1755          16 LPVGFELAAELTYPEPEGTSSGLLNASAQVF-GILFTVVYGQLFTAFGDI-VANIALCLALVLGTLLTLIIPPDLR   89 (103)
Q Consensus        16 ~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~-g~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~il~~f~k~~~k   89 (103)
                      .+...-+..|...|..-++..|+.+..+++. +..-+.+.+ +.++.|.. ...++.+.+.+++.+..++++++-|
T Consensus       354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~  428 (432)
T PRK10406        354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGK  428 (432)
T ss_pred             HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            3444556778544444689999999888863 554555555 44444432 2233344555555555555655433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=88.97  E-value=6.2  Score=29.03  Aligned_cols=49  Identities=14%  Similarity=-0.008  Sum_probs=29.5

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHH
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYG   55 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~   55 (103)
                      .+.|+.. +.++...-+..|...|...+...++....+++.+.+-..+..
T Consensus        99 ~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  147 (366)
T TIGR00886        99 LFIGIAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP  147 (366)
T ss_pred             HHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            4456653 345666777788554444577778777666666554444443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=88.91  E-value=6.1  Score=29.85  Aligned_cols=77  Identities=13%  Similarity=-0.067  Sum_probs=38.5

Q ss_pred             HhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCc
Q psy1755          10 FFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPD   87 (103)
Q Consensus        10 ~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~   87 (103)
                      ++.....|..=-++.|.. +..+ +..++.......++.++-....+++.++.|-....+....+.++..+..++.+++
T Consensus       109 ~~~a~~d~~~d~~~~~~~-~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       109 LASATQDIATDGMAAEHF-NGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HHHHHHHHHHHHHHHHhC-CHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            344444444444666633 3333 4445555544444544444455556666564444444444555555555556554

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=88.71  E-value=6.4  Score=30.44  Aligned_cols=81  Identities=11%  Similarity=0.025  Sum_probs=44.5

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hhh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TLI   83 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~f   83 (103)
                      .+.|+......+...-...| .||..+ +...++.....++...+-+.+.+.+.+..|-.+.-+......+++.++ +.+
T Consensus       112 ~l~Gi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~  190 (413)
T PRK15403        112 FIQGTSICFIATVGYVTVQE-AFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLA  190 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            34565554445555544455 677655 455677777777777666666666655444334444444444444444 334


Q ss_pred             cCCc
Q psy1755          84 IPPD   87 (103)
Q Consensus        84 ~k~~   87 (103)
                      .|++
T Consensus       191 lp~~  194 (413)
T PRK15403        191 MPET  194 (413)
T ss_pred             CCCC
Confidence            5543

>KOG0569|consensus

Probab=88.66  E-value=4.1  Score=33.38  Aligned_cols=86  Identities=15%  Similarity=0.138  Sum_probs=57.7

Q ss_pred             HHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCc
Q psy1755           8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPD   87 (103)
Q Consensus         8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~   87 (103)
                      .-.|..+.=|+..=+.+|+-.|-+-+.+.++.....-+..++..+.+-.+.+-.|....-++.+.+....+.++..++|.
T Consensus       378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCccc
Confidence            44456678899999999988888888888877777777777666666555555566333333344555555566667776


Q ss_pred             chhhhh
Q psy1755          88 LRRQAA   93 (103)
Q Consensus        88 ~kR~~~   93 (103)
                      -+|.-.
T Consensus       458 kgr~~~  463 (485)
T KOG0569|consen  458 KGRTPY  463 (485)
T ss_pred             CCCCHH
Confidence            556433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=88.60  E-value=3.1  Score=36.26  Aligned_cols=55  Identities=15%  Similarity=0.015  Sum_probs=44.6

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT   59 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~   59 (103)
                      ..++|++.+...+...-+..+.+-|..-+...|+.+..+++++.+...+.+.+.+
T Consensus       341 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        341 LFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888887888888888897777777999999999999988888888777664

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=88.52  E-value=5.1  Score=34.62  Aligned_cols=57  Identities=23%  Similarity=0.187  Sum_probs=44.4

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA   60 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~   60 (103)
                      ...+.|++.+...|...-+..|.+-|..-+...|+.....+++.++-..+.+++.+.
T Consensus       109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        109 VTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345678888888899999999987666568889999988888777777777766544

>TIGR00788 fbt folate/biopterin transporter

Probab=88.23  E-value=5.5  Score=31.66  Aligned_cols=54  Identities=15%  Similarity=-0.002  Sum_probs=41.6

Q ss_pred             HHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755           9 SFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG   62 (103)
Q Consensus         9 G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~   62 (103)
                      ++..+..+...+-++.|.+.|..|++..++++...++.+.+-..+.+.+.+..|
T Consensus       362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            444344444458899999999999999999999999999888877666665544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0252|consensus

Probab=88.11  E-value=1  Score=37.19  Aligned_cols=72  Identities=26%  Similarity=0.325  Sum_probs=54.7

Q ss_pred             HHhhcCCCC-chhHHHHHHHHhhhhHHHHHHHHHhhhc-----ccchhHHHHHHHHHHHHHHHHHhhcCCcchhhhhhhc
Q psy1755          23 AAELTYPEP-EGTSSGLLNASAQVFGILFTVVYGQLFT-----AFGDIVANIALCLALVLGTLLTLIIPPDLRRQAAHSD   96 (103)
Q Consensus        23 a~E~tyPv~-e~~ssgll~~~~qi~g~i~~~i~~~l~~-----~~~~~~~~~~~~~~~~~~~il~~f~k~~~kR~~~e~~   96 (103)
                      .+| .||-. -++.-|+--++|-.+.++-...++++.+     ..+..+..|.++++.+++.+..++++|. ||+++|+.
T Consensus       431 paE-~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEt-k~~~leei  508 (538)
T KOG0252|consen  431 PAE-IFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPET-KGKSLEEI  508 (538)
T ss_pred             ehh-hchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecc-cccCHHHh
Confidence            356 44543 3777888888999999988888888887     3456678888899999999999999955 55555554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=88.03  E-value=9  Score=30.26  Aligned_cols=39  Identities=15%  Similarity=0.122  Sum_probs=28.7

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQ   44 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~q   44 (103)
                      .+.|+..++.+|...-+..|...|..-+...++....+.
T Consensus       126 ~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~  164 (490)
T PRK10642        126 MAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSI  164 (490)
T ss_pred             HHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence            467999999999999999995444455677776655443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=88.01  E-value=7.5  Score=30.03  Aligned_cols=87  Identities=22%  Similarity=0.197  Sum_probs=49.5

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcC
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIP   85 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k   85 (103)
                      .+.|+..+...|...-.+.+ ..+.+.++.+++........+..-....+++.+. +..+.....  .++++.++...++
T Consensus       320 ~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~--~~~~~~~~~~~~~  395 (413)
T PRK15403        320 SLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLL--AVVAGVIVVFTLA  395 (413)
T ss_pred             HHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHH--HHHHHHHHHHHHH
Confidence            34555556667777665543 5566678888888887777776666666655544 332222222  2222233444556


Q ss_pred             Ccchhhhhhhc
Q psy1755          86 PDLRRQAAHSD   96 (103)
Q Consensus        86 ~~~kR~~~e~~   96 (103)
                      .+.||.++|+.
T Consensus       396 ~~~~~~~~~~~  406 (413)
T PRK15403        396 GLLNRVRQHQA  406 (413)
T ss_pred             HHHhhhhhhhh
Confidence            66666665554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=87.54  E-value=5.1  Score=30.21  Aligned_cols=58  Identities=5%  Similarity=-0.337  Sum_probs=37.6

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD   63 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~   63 (103)
                      .+.|+......|...-...|...+...+...|+.....++...+-..+.+.+.+..|-
T Consensus       120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~  177 (399)
T PRK05122        120 LLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGL  177 (399)
T ss_pred             HHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccH
Confidence            3567777777787777778876565557777776666555555555555666655553

>TIGR00883 2A0106 metabolite-proton symporter

Probab=87.33  E-value=2.1  Score=31.41  Aligned_cols=59  Identities=20%  Similarity=0.116  Sum_probs=40.6

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHH-hhhhHHHHHHHHHhhhcccch
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNAS-AQVFGILFTVVYGQLFTAFGD   63 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~-~qi~g~i~~~i~~~l~~~~~~   63 (103)
                      ..+.|++.+...|...-+..|...+...+...|+.... +.+.+.+-+.+.+++.++.|.
T Consensus       319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~  378 (394)
T TIGR00883       319 VLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGD  378 (394)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCc
Confidence            34567777778888888889965444446666765444 445666778888888887774

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=87.22  E-value=3  Score=34.76  Aligned_cols=54  Identities=13%  Similarity=0.054  Sum_probs=39.2

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLF   58 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~   58 (103)
                      -.+.|+..++.+|++.-+..|..-|..-+...|+......++.++-..+.+++.
T Consensus       179 r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~  232 (633)
T TIGR00805       179 QLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCL  232 (633)
T ss_pred             HHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            357888999999999999999655555577778877776666555555555444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=86.97  E-value=12  Score=28.82  Aligned_cols=36  Identities=8%  Similarity=0.021  Sum_probs=27.6

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHH
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNA   41 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~   41 (103)
                      .+.|+..++..|...-+..|...|...+...++...
T Consensus       132 ~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~  167 (432)
T PRK10406        132 LFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYV  167 (432)
T ss_pred             HHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHH
Confidence            467888899999999999997666655666665543

>PRK09952 shikimate transporter; Provisional

Probab=86.93  E-value=13  Score=28.95  Aligned_cols=44  Identities=18%  Similarity=-0.007  Sum_probs=30.4

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHH
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGIL   49 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i   49 (103)
                      .+.|+..++.+|...-+..|...|...+...+.......++.++
T Consensus       133 ~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l  176 (438)
T PRK09952        133 AIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL  176 (438)
T ss_pred             HHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            45788999999999999999554444466666666555544433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=86.33  E-value=10  Score=28.56  Aligned_cols=52  Identities=12%  Similarity=0.094  Sum_probs=37.9

Q ss_pred             hhchhHHHHHHHHhhcCC-CCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755          12 MTGYLPVGFELAAELTYP-EPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD   63 (103)
Q Consensus        12 ~~~~~Pi~lEla~E~tyP-v~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~   63 (103)
                      .+...+...-...+..-| ...++..++.+...++.+.+-+.+.+++.+..|-
T Consensus       317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~  369 (390)
T TIGR02718       317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGY  369 (390)
T ss_pred             HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            344445555555555544 5568888999999999999999999998887664

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=85.88  E-value=10  Score=29.07  Aligned_cols=59  Identities=7%  Similarity=-0.119  Sum_probs=38.9

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI   64 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~   64 (103)
                      ..+.|+..+...|..--+..+.+ |...+...++.....++...+-..+.+++.|..|..
T Consensus       312 ~~l~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~  370 (394)
T PRK10213        312 AIIWGLTFALVPVGWSTWITRSL-ADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLT  370 (394)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence            34456555444444444666755 544456677777777888888888899988877653

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=85.67  E-value=4.6  Score=33.09  Aligned_cols=85  Identities=20%  Similarity=0.124  Sum_probs=57.4

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      ...+.|.+..-..|.---.--|+.-+..-....++.....|+..++-+.+-+.+....|..+..++-+.+.+++..++..
T Consensus       109 ~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~  188 (524)
T PF05977_consen  109 LTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR  188 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777766777777777787644343566778888888888888888887777667655555555555555556666


Q ss_pred             cCCcc
Q psy1755          84 IPPDL   88 (103)
Q Consensus        84 ~k~~~   88 (103)
                      .|++.
T Consensus       189 ~~~~~  193 (524)
T PF05977_consen  189 WKPPP  193 (524)
T ss_pred             ccccc
Confidence            66644

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09528 lacY galactoside permease; Reviewed

Probab=85.10  E-value=5.7  Score=30.41  Aligned_cols=57  Identities=16%  Similarity=0.096  Sum_probs=34.6

Q ss_pred             chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcch
Q psy1755          32 EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLR   89 (103)
Q Consensus        32 e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~k   89 (103)
                      .+...|.....+++...+-+.+.+.+.+. +..+..+......+++.++.++.+++.+
T Consensus       139 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~  195 (420)
T PRK09528        139 SGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINFWLGSGSALILLVLLFFAKPDAP  195 (420)
T ss_pred             ccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhHHHHHHHHHHHHHHHhccccccc
Confidence            34455777788888888888888777653 3223334444444555566666655443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=84.74  E-value=9.7  Score=29.63  Aligned_cols=82  Identities=12%  Similarity=-0.049  Sum_probs=45.3

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHh-hhcccchhHHHHHHHHHHHH-HHHHHhh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQ-LFTAFGDIVANIALCLALVL-GTLLTLI   83 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~-l~~~~~~~~~~~~~~~~~~~-~~il~~f   83 (103)
                      .+.|++.+...|..--..+|...|..-+...|+.+..+++++.+...+... +....+-.+..++.+...++ ..+.+++
T Consensus       128 ~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~  207 (452)
T PRK11273        128 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAM  207 (452)
T ss_pred             HHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            456888777888777777885433334778888888888876554443322 11112222333333333333 3444555


Q ss_pred             cCCc
Q psy1755          84 IPPD   87 (103)
Q Consensus        84 ~k~~   87 (103)
                      .|++
T Consensus       208 ~~~~  211 (452)
T PRK11273        208 MRDT  211 (452)
T ss_pred             ccCC
Confidence            6653

>PRK09848 glucuronide transporter; Provisional

Probab=84.35  E-value=13  Score=28.69  Aligned_cols=84  Identities=13%  Similarity=0.065  Sum_probs=47.5

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCC-------CCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc--------hh---HHH-
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYP-------EPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG--------DI---VAN-   67 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyP-------v~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~--------~~---~~~-   67 (103)
                      +.|+..+...|...-+..+..-+       ..|+...|+.+...++.+.+-..+.+.+.+..|        +.   ... 
T Consensus       328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~~~~~~~~i~~  407 (448)
T PRK09848        328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQTPEVIMGIRT  407 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHH
Confidence            44555555566666666664322       235888899888888888777776666543211        11   111 


Q ss_pred             ---HHHHHHHHHHHHHHhhcCCcchh
Q psy1755          68 ---IALCLALVLGTLLTLIIPPDLRR   90 (103)
Q Consensus        68 ---~~~~~~~~~~~il~~f~k~~~kR   90 (103)
                         +..+.+.+++.++..++|-+-+|
T Consensus       408 ~~~~~p~~~~~~~~~~~~~y~l~~~~  433 (448)
T PRK09848        408 SIALVPCGFMLLAFVIIWFYPLTDKK  433 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHeeCCHHH
Confidence               22234556666666677665443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=84.27  E-value=0.91  Score=36.54  Aligned_cols=62  Identities=18%  Similarity=0.306  Sum_probs=43.7

Q ss_pred             cCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHHHhhcCCcchhh
Q psy1755          27 TYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI-VANIALCLALVLGTLLTLIIPPDLRRQ   91 (103)
Q Consensus        27 tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~il~~f~k~~~kR~   91 (103)
                      -||..-+..+|+.-+.|+++|+.++..++...+..|+. ...+++..+.+++..+   .+..|+|+
T Consensus       342 if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~---~~~~y~r~  404 (417)
T COG2223         342 IFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVL---TWALYARR  404 (417)
T ss_pred             HHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence            45667789999999999999999999999988887743 3444444454555444   34444444

>KOG0255|consensus

Probab=84.20  E-value=11  Score=29.92  Aligned_cols=78  Identities=23%  Similarity=0.191  Sum_probs=52.9

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      .=.+.|++..+.+.++.-+..|..-|..-+....+ ..+.-..|.+.+.....+.+  +=.|..|......++.++++++
T Consensus       177 ~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l  253 (521)
T KOG0255|consen  177 FRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFL  253 (521)
T ss_pred             HHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHc
Confidence            33678999999999999999999988777777777 66666666666666666665  2223444444444444444444


Q ss_pred             c
Q psy1755          84 I   84 (103)
Q Consensus        84 ~   84 (103)
                      .
T Consensus       254 ~  254 (521)
T KOG0255|consen  254 P  254 (521)
T ss_pred             c
Confidence            4

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=84.13  E-value=12  Score=29.54  Aligned_cols=48  Identities=10%  Similarity=0.099  Sum_probs=30.4

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCC-chhHHHHHHHHhhhhHHHHHHHHH
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEP-EGTSSGLLNASAQVFGILFTVVYG   55 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~-e~~ssgll~~~~qi~g~i~~~i~~   55 (103)
                      .+.|++.+...| ......| .||.. -+...|+.+..+++++.+-..+..
T Consensus       132 ~l~G~~~~~~~~-~~~~i~~-~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~  180 (476)
T PLN00028        132 FFIGFSLATFVS-CQYWMST-MFNGKIVGTANGIAAGWGNLGGGVTQLLMP  180 (476)
T ss_pred             HHHHHHHHhhHH-HHHHHHH-hcChhheeHHHHHHHHHHHHHHHHHHHHHH
Confidence            456776665544 3446677 45544 488889988777777665544443

>KOG2532|consensus

Probab=84.11  E-value=2.3  Score=34.32  Aligned_cols=79  Identities=16%  Similarity=0.083  Sum_probs=58.1

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc-cchhHHHHHHHHHHHHHHHHHhhc
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA-FGDIVANIALCLALVLGTLLTLII   84 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~il~~f~   84 (103)
                      .+.|+..+..+|..-.+.++=..|-.-+.-.+++..+.|++.++-..+.+.+-+. .|=.+.-.+.+++.++-.++|+++
T Consensus       136 ~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  136 FLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            4578888888888888888866665558889999999999999988899988877 454444444555555555555544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=84.10  E-value=8.9  Score=29.15  Aligned_cols=39  Identities=23%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             HHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755          20 FELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLF   58 (103)
Q Consensus        20 lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~   58 (103)
                      .-+..|++.+-+| +...++-...+++.+.+...+...+.
T Consensus       121 ~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~  160 (437)
T TIGR00792       121 WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLV  160 (437)
T ss_pred             hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456787765454 44556666666666655544444443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03612 spermidine synthase; Provisional

Probab=83.78  E-value=10  Score=31.09  Aligned_cols=59  Identities=10%  Similarity=0.096  Sum_probs=38.4

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhh-hcccch
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQL-FTAFGD   63 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l-~~~~~~   63 (103)
                      .+.+.|++++..+|+...+..+.. ....+.+.|-+...+.+++++=.++.+.+ .+..|.
T Consensus       116 ~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~  175 (521)
T PRK03612        116 LVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGL  175 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcch
Confidence            345678999999999998887622 21235566777777777666665555543 344554

>TIGR00896 CynX cyanate transporter

Probab=83.50  E-value=3.7  Score=30.50  Aligned_cols=59  Identities=14%  Similarity=0.136  Sum_probs=41.7

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCC-CchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPE-PEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD   63 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv-~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~   63 (103)
                      +.+.|+..+..+|...........|. ..+...|+.+..+++.+++-+.+.+++.|+.|+
T Consensus       292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45678888888888777665433332 225667888888888888888888888877654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=83.22  E-value=12  Score=28.25  Aligned_cols=56  Identities=7%  Similarity=-0.211  Sum_probs=40.1

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA   60 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~   60 (103)
                      -.+.|+..+...|...-...+...|...+...|......++...+-+.+.+.+.+.
T Consensus       101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633        101 RFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            35667777777787666666665565567788888888888888777777766544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=83.06  E-value=11  Score=29.23  Aligned_cols=52  Identities=12%  Similarity=-0.136  Sum_probs=34.0

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLF   58 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~   58 (103)
                      +.|+..+...+...-+..|+..|...+...++.....++++.+-+.+...+.
T Consensus       103 l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885       103 ILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555556666665555677788888888888777777766554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=82.96  E-value=21  Score=28.77  Aligned_cols=60  Identities=17%  Similarity=0.045  Sum_probs=47.2

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI   64 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~   64 (103)
                      -.+.|+.....-..++-++++.+-|..-+...+++|..--++-++=-.+.+.+.+++...
T Consensus        96 F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~  155 (403)
T PF03209_consen   96 FLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE  155 (403)
T ss_pred             HHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence            356788888888899999999999998899999998876655555556677778777653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=82.90  E-value=17  Score=26.95  Aligned_cols=39  Identities=15%  Similarity=0.250  Sum_probs=20.8

Q ss_pred             hhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHH
Q psy1755          15 YLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVY   54 (103)
Q Consensus        15 ~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~   54 (103)
                      ..+..+....| .+|...+...++.+......|.+...+.
T Consensus       304 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        304 ISSNAMAVILD-EFPHMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             hhHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555556 4675556666766655554444433333

>TIGR00895 2A0115 benzoate transport

Probab=82.53  E-value=3.1  Score=30.63  Aligned_cols=54  Identities=22%  Similarity=0.218  Sum_probs=38.1

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQL   57 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l   57 (103)
                      ...+.|++.+...|...-+..|..-|...+...|+....+++.+.+-+.+.+++
T Consensus       344 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       344 LGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            345677777778888888888865444447777888888887777776666543

>PRK09669 putative symporter YagG; Provisional

Probab=82.53  E-value=21  Score=27.68  Aligned_cols=56  Identities=11%  Similarity=0.024  Sum_probs=36.1

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhc-------CCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELT-------YPEPEGTSSGLLNASAQVFGILFTVVYGQLFT   59 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~t-------yPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~   59 (103)
                      .+.+.|+..+...|+..-+..|+.       =.-.|+...|..+.+.++...+-..+.+++.+
T Consensus       325 ~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        325 LNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777787777777643       12346666777777777776666666665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=82.15  E-value=18  Score=27.33  Aligned_cols=74  Identities=11%  Similarity=0.035  Sum_probs=48.6

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHH-HHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLN-ASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL   80 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~-~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il   80 (103)
                      ..+-|+..+...|..+.+..+. .|...++..++.+ ...++.+.+...+.+++.|+.|. ...+.+....+++.++
T Consensus       300 q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       300 QILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            4566777777888888888875 3333355567765 45667888888899999988874 3444444444444433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=80.18  E-value=23  Score=26.64  Aligned_cols=26  Identities=15%  Similarity=0.082  Sum_probs=13.2

Q ss_pred             CCchhHHHHHHHHhhhhHHHHHHHHH
Q psy1755          30 EPEGTSSGLLNASAQVFGILFTVVYG   55 (103)
Q Consensus        30 v~e~~ssgll~~~~qi~g~i~~~i~~   55 (103)
                      ..++..+++..+...+.+.+...+.+
T Consensus       323 ~~~g~~~~~~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        323 LRAGVASSTLGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666554444444544444444

>KOG3764|consensus

Probab=80.18  E-value=3.4  Score=33.66  Aligned_cols=85  Identities=16%  Similarity=0.176  Sum_probs=56.0

Q ss_pred             HHHHhhhchhHHHHHHHHhhcCCCCc--hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755           7 GRSFFMTGYLPVGFELAAELTYPEPE--GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII   84 (103)
Q Consensus         7 l~G~f~~~~~Pi~lEla~E~tyPv~e--~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~   84 (103)
                      +-|+-.......++-+.+. .||.++  +.+-|.+..+..++.++=+..-+.+-+..|....-.++...+++...+-+++
T Consensus       168 LQgvgsA~~~tsglamlAd-~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  168 LQGVGSAFADTSGLAMLAD-VFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HhhhhHHHHHhhhHHHHHH-HcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            4455566667778888888 888888  6777777777666655555555555555566556666666677777776666


Q ss_pred             CCcchhhh
Q psy1755          85 PPDLRRQA   92 (103)
Q Consensus        85 k~~~kR~~   92 (103)
                      -+.+|+.+
T Consensus       247 i~p~~~~~  254 (464)
T KOG3764|consen  247 IEPTEMDP  254 (464)
T ss_pred             eCccccCc
Confidence            55544444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.91
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.52
2xut_A	524	Proton/peptide symporter family protein; transport	97.34
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.92
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	96.85
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.76
2xut_A	524	Proton/peptide symporter family protein; transport	96.74
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.49
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.06
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.81
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	95.61
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	86.54
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	81.99

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.91  E-value=6.1e-05  Score=55.70  Aligned_cols=85  Identities=15%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhh-hHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q psy1755           3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQV-FGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLT   81 (103)
Q Consensus         3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi-~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~   81 (103)
                      +...+.|++.+...|...-+..|...|...++..|+.+...++ .+.+.+.+.+.+.+..|..+..+...++.+++.++.
T Consensus       351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  430 (451)
T 1pw4_A          351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  430 (451)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            3456688888888999899999966555579999999999999 999999999999888775555566666666666665


Q ss_pred             hhcCCc
Q psy1755          82 LIIPPD   87 (103)
Q Consensus        82 ~f~k~~   87 (103)
                      ++.+++
T Consensus       431 ~~~~~~  436 (451)
T 1pw4_A          431 IVVMIG  436 (451)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.52  E-value=0.0005  Score=51.73  Aligned_cols=90  Identities=10%  Similarity=-0.016  Sum_probs=58.7

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI   83 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f   83 (103)
                      ...+.|+..+...|....+..|...+..-++..|+.+...++++++-+.+.+.+.+. +..+..+....+.+++.++.++
T Consensus       392 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  470 (491)
T 4aps_A          392 SWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVF  470 (491)
T ss_dssp             HHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777888999999999977666679999999999999999988887766543 3334444455555566555555


Q ss_pred             cCCcchhhhhh
Q psy1755          84 IPPDLRRQAAH   94 (103)
Q Consensus        84 ~k~~~kR~~~e   94 (103)
                      .+++.||...+
T Consensus       471 ~~~~~~~~~~~  481 (491)
T 4aps_A          471 LSKRIQGLMQG  481 (491)
T ss_dssp             C----------
T ss_pred             HHHHHHHHHhc
Confidence            55555554433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.34  E-value=0.00045  Score=52.48  Aligned_cols=91  Identities=11%  Similarity=-0.037  Sum_probs=59.1

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhH-----------HHHHHHH
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIV-----------ANIALCL   72 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~-----------~~~~~~~   72 (103)
                      ...+.|+..+...|....+..|...|...++..|+.+...++++++-+.+.+.+.+..+..|           ..+..++
T Consensus       411 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (524)
T 2xut_A          411 PYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAG  490 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHH
Confidence            34567888888899999999998777777999999999999999999999988876432111           1233445


Q ss_pred             HHHHHHHHHhhcCCcchhhhhh
Q psy1755          73 ALVLGTLLTLIIPPDLRRQAAH   94 (103)
Q Consensus        73 ~~~~~~il~~f~k~~~kR~~~e   94 (103)
                      +.+++.++.+++++++||++.+
T Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~  512 (524)
T 2xut_A          491 FAILAAIVFALYARSYQMQDHY  512 (524)
T ss_dssp             HHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHhccchhh
Confidence            5566666666666666654443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.92  E-value=0.0037  Score=45.96  Aligned_cols=57  Identities=23%  Similarity=0.161  Sum_probs=47.1

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG   62 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~   62 (103)
                      ...+.|++.+...|....++.| .+|...+..+++.. .+++.+.+.+.+.+++.+..|
T Consensus       353 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          353 ALTLCSAFMSIQYPTIFSLGIK-NLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHS-SCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            3467899999999999999999 56655677777766 788999999999999988877

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=96.85  E-value=0.0072  Score=45.31  Aligned_cols=82  Identities=12%  Similarity=-0.036  Sum_probs=57.8

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCC--chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEP--EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLT   81 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~--e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~   81 (103)
                      .-.+.|+..+...|...-+..|...|..  .+...++.....++++.+-+.+.+.+.+..|-.+..+..+...+++.++.
T Consensus       114 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  193 (491)
T 4aps_A          114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY  193 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            3456888899999999999999665544  34466667788888888888888888877665455454444555555555


Q ss_pred             hhcC
Q psy1755          82 LIIP   85 (103)
Q Consensus        82 ~f~k   85 (103)
                      ++.+
T Consensus       194 ~~~~  197 (491)
T 4aps_A          194 YFGG  197 (491)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            5443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.76  E-value=0.0051  Score=44.54  Aligned_cols=84  Identities=15%  Similarity=0.023  Sum_probs=59.2

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-HHh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTL-LTL   82 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i-l~~   82 (103)
                      ...+.|+..+...|...-+..|..-|...+...|+.....++.+.+-+.+.+++.+..+-.+..+.......+..+ ...
T Consensus        94 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (375)
T 2gfp_A           94 ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR  173 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788888899999999999776677788999999999999988888888777655533333433444444444 333


Q ss_pred             hcCCc
Q psy1755          83 IIPPD   87 (103)
Q Consensus        83 f~k~~   87 (103)
                      +.|++
T Consensus       174 ~~~~~  178 (375)
T 2gfp_A          174 WMPET  178 (375)
T ss_dssp             SSCCC
T ss_pred             HCccc
Confidence            44444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=96.74  E-value=0.012  Score=44.45  Aligned_cols=85  Identities=9%  Similarity=-0.028  Sum_probs=57.5

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHH---HHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGL---LNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL   80 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgl---l~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il   80 (103)
                      ...+.|+..+...|...-+..|...|...+...+.   .....++++++-+.+.+++.+..|-.+..+....+.+++.++
T Consensus       115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  194 (524)
T 2xut_A          115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF  194 (524)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            34567888899999999999996544444444555   888888888888888887776666444444444455555555


Q ss_pred             HhhcCCcc
Q psy1755          81 TLIIPPDL   88 (103)
Q Consensus        81 ~~f~k~~~   88 (103)
                      +++.++++
T Consensus       195 ~~~~~~~~  202 (524)
T 2xut_A          195 FWLGRKRY  202 (524)
T ss_dssp             HHSSSSSC
T ss_pred             HHHhcccc
Confidence            55555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.49  E-value=0.034  Score=40.67  Aligned_cols=55  Identities=9%  Similarity=-0.189  Sum_probs=45.5

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLF   58 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~   58 (103)
                      .-.+.|+..+...|...-+..|...|...+...|+.....++++++-+.+.+.+.
T Consensus       123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999665555566689999999999998888888777

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.06  E-value=0.015  Score=42.63  Aligned_cols=86  Identities=13%  Similarity=-0.024  Sum_probs=59.9

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc-hhHHHHHHHHHHHHHHH-HH
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG-DIVANIALCLALVLGTL-LT   81 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~i-l~   81 (103)
                      .-.+.|++.+...|...-+..|..-|..-+...|+.....+++.++-+.+.+++.+..| -.+..+..+.+.++..+ .+
T Consensus       125 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~  204 (451)
T 1pw4_A          125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF  204 (451)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            34678888999999999999996655555788899999999888888888877776665 33444444444444433 44


Q ss_pred             hhcCCcch
Q psy1755          82 LIIPPDLR   89 (103)
Q Consensus        82 ~f~k~~~k   89 (103)
                      ++.|++.+
T Consensus       205 ~~~~~~~~  212 (451)
T 1pw4_A          205 AMMRDTPQ  212 (451)
T ss_dssp             HHCCCSST
T ss_pred             hhccCCHh
Confidence            55665433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.81  E-value=0.019  Score=42.70  Aligned_cols=80  Identities=18%  Similarity=0.075  Sum_probs=47.5

Q ss_pred             HHHhhhchhHHHHHHHHhhcCCCCchhHHHHH-HHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCC
Q psy1755           8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLL-NASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPP   86 (103)
Q Consensus         8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll-~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~   86 (103)
                      .|++.....+....+..|...+..-++..|+. +..+++.+++-+.+.+++.++.|.....+...++.+++.++.++..+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            34444445566677888854333334555663 56667888888888888887666333334445555666655445444


Q ss_pred             c
Q psy1755          87 D   87 (103)
Q Consensus        87 ~   87 (103)
                      +
T Consensus       402 ~  402 (417)
T 2cfq_A          402 G  402 (417)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=95.61  E-value=0.088  Score=39.21  Aligned_cols=85  Identities=14%  Similarity=0.155  Sum_probs=55.9

Q ss_pred             HHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhccc------chhHHHHHHHHHHHHHHHH
Q psy1755           8 RSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAF------GDIVANIALCLALVLGTLL   80 (103)
Q Consensus         8 ~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~------~~~~~~~~~~~~~~~~~il   80 (103)
                      .+.+..+..|+..-+.+| .||-.- ++..|+....+++++++...+...+.+..      +..+..++.+++++++.+.
T Consensus       380 ~~~~~~~~~~~~~~~~~E-~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  458 (491)
T 4gc0_A          380 VAAFAMSWGPVCWVLLSE-IFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF  458 (491)
T ss_dssp             HHHHHTTTTHHHHHHHHH-SSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHH-hCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            344556677888889999 677554 88889999999999988777765444322      1223445555666666554


Q ss_pred             -HhhcCCcchhhhh
Q psy1755          81 -TLIIPPDLRRQAA   93 (103)
Q Consensus        81 -~~f~k~~~kR~~~   93 (103)
                       +++++|..+|.-.
T Consensus       459 ~~~~~PETkg~tLe  472 (491)
T 4gc0_A          459 MWKFVPETKGKTLE  472 (491)
T ss_dssp             HHHHCCCCTTCCHH
T ss_pred             HHheecCCCCCCHH
Confidence             5667776555433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=86.54  E-value=4.8  Score=29.62  Aligned_cols=41  Identities=10%  Similarity=-0.203  Sum_probs=29.6

Q ss_pred             HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhh
Q psy1755           6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVF   46 (103)
Q Consensus         6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~   46 (103)
                      .+.|+..++..|+..-+..|.+.|..-+...++...+..++
T Consensus       134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g  174 (491)
T 4gc0_A          134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG  174 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence            46788999999999999999776655566655554444333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=81.99  E-value=0.23  Score=35.60  Aligned_cols=56  Identities=16%  Similarity=0.042  Sum_probs=43.3

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA   60 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~   60 (103)
                      ...+.|+..+...|....+..|.. |...++..|+.+..+++.+.+.+.+.+.+.+.
T Consensus       297 ~~~l~g~~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  352 (375)
T 2gfp_A          297 PAALFFFGAGMLFPLATSGAMEPF-PFLAGTAGALVGGLQNIGSGVLASLSAMLPQT  352 (375)
T ss_dssp             HHHHHHHHHHHTSSTTHHHHHTHH-HHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhC-CcccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            345678888888899999999964 75558888999999888888777777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.27
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.4
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	94.59

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=2.1e-06  Score=61.26  Aligned_cols=98  Identities=16%  Similarity=0.126  Sum_probs=68.7

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHH-HHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy1755           4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILF-TVVYGQLFTAFGDIVANIALCLALVLGTLLTL   82 (103)
Q Consensus         4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~   82 (103)
                      ...+.|+...+..|....+..|...+...++..|+.+..++++|.+. +.+.+.+.+..|..+..+.+.++.+++.++..
T Consensus       349 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         349 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            34567888888899999999996555455888999999999977654 67778888888866666666666666666555


Q ss_pred             hcCCcchhhhhhhcCCCCC
Q psy1755          83 IIPPDLRRQAAHSDFNIKP  101 (103)
Q Consensus        83 f~k~~~kR~~~e~~~~~~~  101 (103)
                      ++..+.||++.|..++.+|
T Consensus       429 ~~~~~~~~r~~~~~~e~~P  447 (447)
T d1pw4a_         429 VVMIGEKRRHEQLLQELVP  447 (447)
T ss_dssp             HHHHHHHHHHHGGGGGSCC
T ss_pred             HHHHhccccHHHHHHhCCC
Confidence            5544445555555554444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00036  Score=47.66  Aligned_cols=85  Identities=18%  Similarity=0.070  Sum_probs=60.0

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHH-HhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-H
Q psy1755           3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNA-SAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTL-L   80 (103)
Q Consensus         3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~-~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i-l   80 (103)
                      +...+.|++.+...|....+..|...|...++..|+... ..++.+++.+.+.+++.|+.|..+..+...++.+++.+ .
T Consensus       317 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  396 (417)
T d1pv7a_         317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS  396 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            345678888899999999999997666555777777554 45577888888999999888866665655555544444 4


Q ss_pred             HhhcCCc
Q psy1755          81 TLIIPPD   87 (103)
Q Consensus        81 ~~f~k~~   87 (103)
                      .+++|++
T Consensus       397 ~~~l~~~  403 (417)
T d1pv7a_         397 VFTLSGP  403 (417)
T ss_dssp             HHHSCCS
T ss_pred             HHhhcCC
Confidence            4455443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.046  Score=37.88  Aligned_cols=82  Identities=11%  Similarity=-0.013  Sum_probs=51.9

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch-hHHHHHHHHHH-HHHHHHHh
Q psy1755           5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD-IVANIALCLAL-VLGTLLTL   82 (103)
Q Consensus         5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~-~~~~~~~~~~~-~~~~il~~   82 (103)
                      -.+.|++.+...|...-+..|...|..-+...|+...+.++++++...+...+.+..+. .+..+....+. ..+.+.+.
T Consensus       123 ~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  202 (447)
T d1pw4a_         123 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA  202 (447)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHH
Confidence            35678888889999999999965454447888998888888887776666655544332 23333333333 33334444


Q ss_pred             hcCC
Q psy1755          83 IIPP   86 (103)
Q Consensus        83 f~k~   86 (103)
                      +.|+
T Consensus       203 ~~~~  206 (447)
T d1pw4a_         203 MMRD  206 (447)
T ss_dssp             HCCC
T ss_pred             hccc
Confidence            4443