Psyllid ID: psy17594

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58

MELSTLISIKQLSSILDFITGSESSGGGEGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRIFMYGNHFQNTVDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRRDGLSREGAGRVAVGKITGLIRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMGENAQDITLALWVVFVSNLPSYIGETFRTVRLTVEKFNVIESRVLTGEQHLWQELSYSMELSTLISIKQLSSILDFITGSESSGGGEGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARSQ

ccccEEEEEcccEEEEcccccccccccccccccEEEEEEcccccccccccccEEEEcccccccccHHHHHHHHHHHHHccccEEEEEccccccccccEEEEccccccHHHHHHHHHHHHHHHHcccccccccccccHHHcHHcccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHEEEcccccccccccEEEEEEEEcccccccccccccccHHHHccccccccEEEEccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEEEEEEccccEEEEEEEEcccccccccccccccccccccccccccccccccEEEEcccEEEEEEEEEEcccccEEEEEEEccccHHHHHHHHHHHHHccccccccccccccEEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHcccccHHHHHHHHccEEEEEEEccccccccccccccccccccccccccccccccccEEEEccc

cccEEEEEEccccccccccccccccccccccccEEEEEcccccccccccccccEEEEEEEEccccccEEEEEEEEccHHcHHHccccccEEEEcccEEEEEccccccHHHHHHHcccHHHEEccccccccccccccHHHcEEEccccccccccccHEEEEEEEEEEEEEEEEEccccccEEccccHHccccccccccccccccccHHHHHHHHcccccHHHcccccccccccccccccccEEEEEEEEEEEEEccccccccccccEEEEEccccccccccccccEEEEEccccccccEEEEEEEEEEEEEcccccccEEcccEEEEEEEEEccccccEEEEEEEEcccccHHHHcccccEEEEcccccccEEccccEEEEEEccEEEEEEEEEEcccccEEEEEEEccccHHHHHHHHHHHHHHcccccccccccEEEHHHHHHHHHccccEEEEEEEccccccHHccccHHHccccccccccHHHccccEEEEEEEEccccccHHHHHHHHHHHHcccccHHHHHHHHHHEEEEEcccccccEEEccccccccccccHHccccccHcHccHEEEEccc

MELSTLISIKQLSSILDfitgsessgggegidyefnvwpkadcagtefengnrtwfhfgmkggsALKVVKLNIVNLNRQVKMFsqgmapvyrshsTRIFMYGNHFQNTVDKVECMLLAKImsinsphfhfhacnFTERIMYLRDRrdglsregagrvaVGKITGLIRSYTLecnyntgrivnvvppssrdpgkrsnltlvppkytpALFEEMGENAQDITLALWVVFVSnlpsyigetFRTVRLTVEKFNVIESRVLTGEQHLWQELSYSMELSTLISIKQLSSILDfitgsessgggegidyefnvwpkadcagtefengnrtwfhfgmkggsALKVVKLNIVNLNRQVKMFsqgmapvyrshstrnqwerirekptysydgsvftlsfkhritdtksftYFAFTYPYSYSELQTHLfnldakfppneqpnpddiyyVRECVCYTLEGRRVDLLTISshhgitnvseprlphlfpedatcrpkkftdkKVVFLSarvhpgetpssfvMNGVINFLLTRDDPIASLLRKMYLFKiipmlnpdgvarghyrtdtrgvnlnryytnpspvyhpsvfaarsq

MELSTLISIKQLSSILDFITGSESSGGGEGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRIFMYGNHFQNTVDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRRDGlsregagrvavgkiTGLIRSYTLecnyntgrivnvvppssrdpgkrsnltlvPPKYTPALFEEMGENAQDITLALWVVFVSNLPSYIGETFRTVRLTVEKFNVIESRVLTGEQHLWQELSYSMELSTLISIKQLSSILDFITGSESSGGGEGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMfsqgmapvyrshstrnqwerirekptysydgsvftlsfkhritDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHhgitnvseprlphlfpedatcrpkkftDKKVVFLSArvhpgetpssfvMNGVINFLLTRDDPIASLLRKMYLFKIIPmlnpdgvarghyRTDTRGVNLNryytnpspvyhpsvfaarsq

MELSTLISIKQLSSILDFITgsessgggegIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRIFMYGNHFQNTVDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRRDGLSREGAGRVAVGKITGLIRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMGENAQDITLALWVVFVSNLPSYIGETFRTVRLTVEKFNVIESRVLTGEQHLWQELSYSMELSTLISIKQLSSILDFITgsessgggegIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARSQ

*****LISIKQLSSILDFITGS***GGGEGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRIFMYGNHFQNTVDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRRDGLSREGAGRVAVGKITGLIRSYTLECNYNTGRIVNVV**************LVPPKYTPALFEEMGENAQDITLALWVVFVSNLPSYIGETFRTVRLTVEKFNVIESRVLTGEQHLWQELSYSMELSTLISIKQLSSILDFITGSESSGGGEGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDAKF********DDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYH*********

***STLISIKQLSSI*************EGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRIFMYGNHFQNTVDKVECMLLAKIMSINSPHFHFHACNFTER****************GRVAVGKITGLIRSYTLECNYNTGRIVN****************LVPPKYTPALFEEMGENAQDITLALWVVFVSNLPSYIGETFRTVRLTVEKFNVIESRVLTGEQHLWQELSYSME*****************TGSESSGGGEGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRNQ*ERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSE******************TDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAAR**

**L******K******************EGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRIFMYGNHFQNTVDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRRD****EGAGRVAVGKITGLIRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMGENAQDITLALWVVFVSNLPSYIGETFRTVRLTVEKFNVIESRVLTGEQHLWQELSYSMELSTLISIKQLSSILDFITGSESSGGGEGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		579	2.2.26 [Sep-21-2011]
B0JZV4		944	Cytosolic carboxypeptidas	yes	N/A	0.504	0.309	0.565	2e-95
B2GV17		832	Cytosolic carboxypeptidas	yes	N/A	0.495	0.344	0.549	6e-94
Q8NDL9		886	Cytosolic carboxypeptidas	no	N/A	0.533	0.348	0.525	6e-94
Q68EI3		885	Cytosolic carboxypeptidas	yes	N/A	0.478	0.312	0.544	2e-93
Q09M02		886	Cytosolic carboxypeptidas	yes	N/A	0.500	0.327	0.540	4e-93
Q58CX9		885	Cytosolic carboxypeptidas	yes	N/A	0.478	0.312	0.562	7e-93
D2GXM8		884	Cytosolic carboxypeptidas	yes	N/A	0.476	0.312	0.556	6e-91
Q09LZ8		540	Cytosolic carboxypeptidas	no	N/A	0.417	0.448	0.352	9e-41
Q09296		459	Cytosolic carboxypeptidas	yes	N/A	0.388	0.490	0.392	3e-39
Q5VU57		503	Cytosolic carboxypeptidas	no	N/A	0.417	0.481	0.338	9e-39

>sp\|B0JZV4\|CBPC5_XENTR Cytosolic carboxypeptidase-like protein 5 OS=Xenopus tropicalis GN=agbl5 PE=2 SV=1	Back alignment and function desciption

 Score =  350 bits (897), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/297 (56%), Positives = 218/297 (73%), Gaps = 5/297 (1%)

Query: 287 DFITGSESSGGGEGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNL 346
           D  +GS S G     DYEFN+W K DCA TE+ENGNR+WF+F ++ G+  K++K+NI+N+
Sbjct: 33  DAFSGSVSGGSVPTPDYEFNIWTKPDCAETEYENGNRSWFYFSVRFGAPGKLIKINIMNM 92

Query: 347 NRQVKMFSQGMAPVYRSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTK-SFTYFAF 405
           N+Q K++SQGMAP  R+   R++WERIR++PT+    + F LSF HR  D + S TYFAF
Sbjct: 93  NKQSKLYSQGMAPFVRTVPIRSRWERIRDRPTFEMVENQFILSFVHRFLDCRGSTTYFAF 152

Query: 406 TYPYSYSELQTHLFNLDAKFP--PNEQPN--PDDIYYVRECVCYTLEGRRVDLLTISSHH 461
            +P+SY E Q  +  LD +F    N  P   PD IYY RE +C++L+G RVDLLTISS H
Sbjct: 153 CFPFSYEESQELMAGLDDRFSDCKNITPGSFPDSIYYHRELLCHSLDGLRVDLLTISSCH 212

Query: 462 GITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDD 521
           G+T   EPRL  LFP+ +T RP +FT K+V FLS+RVHPGETPSSFV NG + F+L +DD
Sbjct: 213 GMTEEREPRLDKLFPDRSTPRPYRFTGKRVYFLSSRVHPGETPSSFVFNGFLEFILRQDD 272

Query: 522 PIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578
           P A +LR+M++FK+IPMLNPDGV RGHYRTD+RGVNLNR Y NP    HPSV+AA++
Sbjct: 273 PRAQMLRRMFVFKLIPMLNPDGVVRGHYRTDSRGVNLNRQYLNPDFELHPSVYAAKT 329

Metallocarboxypeptidase that mediates tubulin deglutamylation. Specifically catalyzes the deglutamylation of the branching point glutamate side chains generated by post-translational glutamylation in proteins such as tubulins. In contrast, it is not able to act as a long-chain deglutamylase that shortens long polyglutamate chains.
Xenopus tropicalis (taxid: 8364)
EC: 3EC: .EC: 4EC: .EC: 1EC: 7EC: .EC: -

>sp\|B2GV17\|CBPC5_RAT Cytosolic carboxypeptidase-like protein 5 OS=Rattus norvegicus GN=Agbl5 PE=2 SV=1	Back alignment and function description

>sp\|Q8NDL9\|CBPC5_HUMAN Cytosolic carboxypeptidase-like protein 5 OS=Homo sapiens GN=AGBL5 PE=2 SV=1	Back alignment and function description

>sp\|Q68EI3\|CBPC5_DANRE Cytosolic carboxypeptidase-like protein 5 OS=Danio rerio GN=agbl5 PE=2 SV=1	Back alignment and function description

>sp\|Q09M02\|CBPC5_MOUSE Cytosolic carboxypeptidase-like protein 5 OS=Mus musculus GN=Agbl5 PE=1 SV=2	Back alignment and function description

>sp\|Q58CX9\|CBPC5_BOVIN Cytosolic carboxypeptidase-like protein 5 OS=Bos taurus GN=AGBL5 PE=2 SV=3	Back alignment and function description

>sp\|D2GXM8\|CBPC5_AILME Cytosolic carboxypeptidase-like protein 5 OS=Ailuropoda melanoleuca GN=AGBL5 PE=3 SV=1	Back alignment and function description

>sp\|Q09LZ8\|CBPC6_MOUSE Cytosolic carboxypeptidase 6 OS=Mus musculus GN=Agbl4 PE=1 SV=1	Back alignment and function description

>sp\|Q09296\|CBPC6_CAEEL Cytosolic carboxypeptidase 6 OS=Caenorhabditis elegans GN=ccpp-6 PE=2 SV=2	Back alignment and function description

>sp\|Q5VU57\|CBPC6_HUMAN Cytosolic carboxypeptidase 6 OS=Homo sapiens GN=AGBL4 PE=2 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		579
357617689		1046	putative ATP/GTP binding protein-like 5	0.481	0.266	0.645	1e-104
242018378		1093	conserved hypothetical protein [Pediculu	0.483	0.256	0.614	1e-103
91093643		771	PREDICTED: similar to ATP/GTP binding pr	0.531	0.399	0.577	1e-96
383856849		881	PREDICTED: cytosolic carboxypeptidase-li	0.493	0.324	0.588	2e-96
307199433		837	Cytosolic carboxypeptidase-like protein	0.492	0.340	0.587	3e-95
307190849		880	Cytosolic carboxypeptidase-like protein	0.495	0.326	0.579	4e-95
328779872		869	PREDICTED: cytosolic carboxypeptidase-li	0.483	0.322	0.586	3e-94
332024615		850	Cytosolic carboxypeptidase-like protein	0.483	0.329	0.579	7e-94
187607275		944	cytosolic carboxypeptidase-like protein	0.504	0.309	0.565	1e-93
340713017		855	PREDICTED: cytosolic carboxypeptidase-li	0.497	0.336	0.570	6e-93

>gi\|357617689\|gb\|EHJ70929.1\| putative ATP/GTP binding protein-like 5 [Danaus plexippus]	Back alignment and taxonomy information

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/282 (64%), Positives = 226/282 (80%), Gaps = 3/282 (1%)

Query: 299 EGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMA 358
           E  DYEFN+W + DCAGTEFENGNRTWF+FG++       V+LN++NLN+Q KM++QGMA
Sbjct: 46  ETPDYEFNLWTRPDCAGTEFENGNRTWFYFGIQASEPNVQVRLNLINLNKQGKMYNQGMA 105

Query: 359 PVYRSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDT-KSFTYFAFTYPYSYSELQTH 417
           PV R+   + QWERIR++P +S D + FTLSF++R +D  K+ T+FAFTYP+S++ELQ  
Sbjct: 106 PVTRTLPGKPQWERIRDRPVHSTDDNTFTLSFRYRTSDNPKATTFFAFTYPFSFAELQIA 165

Query: 418 LFNLDAKFPPNEQP-NPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFP 476
           L ++D K  P   P +PDDIYY REC+ Y+LEGRRVDLLTISSHHGIT   E RL +LFP
Sbjct: 166 LNSIDLKMLPVPPPQSPDDIYYCRECLIYSLEGRRVDLLTISSHHGITMEREDRLKNLFP 225

Query: 477 EDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKII 536
           E+   RP KF +KKV+F+SARVHPGETPSSFV NG +N LLTR+DPIA  LRK+Y+FK+I
Sbjct: 226 ENQE-RPFKFQNKKVIFISARVHPGETPSSFVFNGFLNLLLTRNDPIAIQLRKLYVFKMI 284

Query: 537 PMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578
           P LNPDGVARGHYRTDTRGVNLNR Y NPS +YHP+V+A+RS
Sbjct: 285 PFLNPDGVARGHYRTDTRGVNLNRVYLNPSLLYHPTVYASRS 326

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|242018378\|ref\|XP_002429654.1\| conserved hypothetical protein [Pediculus humanus corporis] gi\|212514639\|gb\|EEB16916.1\| conserved hypothetical protein [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|91093643\|ref\|XP_967549.1\| PREDICTED: similar to ATP/GTP binding protein-like 5 [Tribolium castaneum] gi\|270015822\|gb\|EFA12270.1\| carboxypeptidase A [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|383856849\|ref\|XP_003703919.1\| PREDICTED: cytosolic carboxypeptidase-like protein 5-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|307199433\|gb\|EFN80046.1\| Cytosolic carboxypeptidase-like protein 5 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|307190849\|gb\|EFN74695.1\| Cytosolic carboxypeptidase-like protein 5 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|328779872\|ref\|XP_396180.4\| PREDICTED: cytosolic carboxypeptidase-like protein 5-like [Apis mellifera]	Back alignment and taxonomy information

>gi\|332024615\|gb\|EGI64812.1\| Cytosolic carboxypeptidase-like protein 5 [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|187607275\|ref\|NP_001120203.1\| cytosolic carboxypeptidase-like protein 5 [Xenopus (Silurana) tropicalis] gi\|317374806\|sp\|B0JZV4.1\|CBPC5_XENTR RecName: Full=Cytosolic carboxypeptidase-like protein 5; AltName: Full=ATP/GTP-binding protein-like 5 gi\|166797060\|gb\|AAI59333.1\| LOC100145249 protein [Xenopus (Silurana) tropicalis]	Back alignment and taxonomy information

>gi\|340713017\|ref\|XP_003395048.1\| PREDICTED: cytosolic carboxypeptidase-like protein 5-like [Bombus terrestris]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		579
UNIPROTKB\|B0JZV4		944	agbl5 "Cytosolic carboxypeptid	0.478	0.293	0.578	1.8e-87
UNIPROTKB\|F1SDQ4		886	AGBL5 "Uncharacterized protein	0.478	0.312	0.569	3.7e-87
RGD\|1598311		832	Agbl5 "ATP/GTP binding protein	0.478	0.332	0.562	3.7e-87
UNIPROTKB\|Q8NDL9		886	AGBL5 "Cytosolic carboxypeptid	0.478	0.312	0.562	6e-87
UNIPROTKB\|Q58CX9		885	AGBL5 "Cytosolic carboxypeptid	0.478	0.312	0.565	7.7e-87
UNIPROTKB\|I3LU97		698	AGBL5 "Uncharacterized protein	0.478	0.396	0.565	1.3e-86
ZFIN\|ZDB-GENE-040822-29		885	agbl5 "ATP/GTP binding protein	0.478	0.312	0.544	1.3e-86
MGI\|MGI:2441745		886	Agbl5 "ATP/GTP binding protein	0.478	0.312	0.558	3.3e-86
UNIPROTKB\|D4A7B2		807	LOC362710 "Protein LOC362710"	0.478	0.343	0.558	4.3e-86
UNIPROTKB\|E9PT89		832	Agbl5 "Protein LOC362710" [Rat	0.478	0.332	0.558	4.3e-86

UNIPROTKB\|B0JZV4 agbl5 "Cytosolic carboxypeptidase-like protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 163/282 (57%), Positives = 212/282 (75%)

Query:   302 DYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVY 361
             DYEFN+W K DCA TE+ENGNR+WF+F ++ G+  K++K+NI+N+N+Q K++SQGMAP  
Sbjct:    48 DYEFNIWTKPDCAETEYENGNRSWFYFSVRFGAPGKLIKINIMNMNKQSKLYSQGMAPFV 107

Query:   362 RSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTK-SFTYFAFTYPYSYSELQTHLFN 420
             R+   R++WERIR++PT+    + F LSF HR  D + S TYFAF +P+SY E Q  +  
Sbjct:   108 RTVPIRSRWERIRDRPTFEMVENQFILSFVHRFLDCRGSTTYFAFCFPFSYEESQELMAG 167

Query:   421 LDAKFPP--NEQPN--PDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFP 476
             LD +F    N  P   PD IYY RE +C++L+G RVDLLTISS HG+T   EPRL  LFP
Sbjct:   168 LDDRFSDCKNITPGSFPDSIYYHRELLCHSLDGLRVDLLTISSCHGMTEEREPRLDKLFP 227

Query:   477 EDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKII 536
             + +T RP +FT K+V FLS+RVHPGETPSSFV NG + F+L +DDP A +LR+M++FK+I
Sbjct:   228 DRSTPRPYRFTGKRVYFLSSRVHPGETPSSFVFNGFLEFILRQDDPRAQMLRRMFVFKLI 287

Query:   537 PMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578
             PMLNPDGV RGHYRTD+RGVNLNR Y NP    HPSV+AA++
Sbjct:   288 PMLNPDGVVRGHYRTDSRGVNLNRQYLNPDFELHPSVYAAKT 329

GO:0004181 "metallocarboxypeptidase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0015631 "tubulin binding" evidence=ISS

GO:0035608 "protein deglutamylation" evidence=ISS

GO:0035611 "protein branching point deglutamylation" evidence=ISS

UNIPROTKB\|F1SDQ4 AGBL5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1598311 Agbl5 "ATP/GTP binding protein-like 5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8NDL9 AGBL5 "Cytosolic carboxypeptidase-like protein 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q58CX9 AGBL5 "Cytosolic carboxypeptidase-like protein 5" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LU97 AGBL5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040822-29 agbl5 "ATP/GTP binding protein-like 5" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:2441745 Agbl5 "ATP/GTP binding protein-like 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|D4A7B2 LOC362710 "Protein LOC362710" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PT89 Agbl5 "Protein LOC362710" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q09M02	CBPC5_MOUSE	3, ., 4, ., 1, 7, ., -	0.5408	0.5008	0.3273	yes	N/A
B0JZV4	CBPC5_XENTR	3, ., 4, ., 1, 7, ., -	0.5656	0.5043	0.3093	yes	N/A
D2GXM8	CBPC5_AILME	3, ., 4, ., 1, 7, ., -	0.5567	0.4766	0.3122	yes	N/A
Q68EI3	CBPC5_DANRE	3, ., 4, ., 1, 7, ., -	0.5441	0.4784	0.3129	yes	N/A
B2GV17	CBPC5_RAT	3, ., 4, ., 1, 7, ., -	0.5498	0.4956	0.3449	yes	N/A
Q58CX9	CBPC5_BOVIN	3, ., 4, ., 1, 7, ., -	0.5622	0.4784	0.3129	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.17	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		579
cd06236		308	cd06236, M14_AGBL5_like, Peptidase M14-like domain	3e-83
cd06236		308	cd06236, M14_AGBL5_like, Peptidase M14-like domain	1e-50
cd06235		258	cd06235, M14_Nna1_like_2, Peptidase M14-like domai	1e-46
cd06908		261	cd06908, M14_AGBL4_like, Peptidase M14-like domain	1e-36
cd06906		278	cd06906, M14_Nna1, Peptidase M14-like domain of AT	4e-34
cd06907		261	cd06907, M14_AGBL2-3_like, Peptidase M14-like doma	1e-33
cd03856		258	cd03856, M14_Nna1_like, Peptidase M14-like domain	7e-25
cd06234		263	cd06234, M14_Nna1_like_1, Peptidase M14-like domai	4e-24
pfam00246		277	pfam00246, Peptidase_M14, Zinc carboxypeptidase	9e-20
smart00631		277	smart00631, Zn_pept, Zn_pept domain	4e-12
cd06235		258	cd06235, M14_Nna1_like_2, Peptidase M14-like domai	1e-11
cd06237		245	cd06237, M14_Nna1_like_3, Peptidase M14-like domai	9e-09
cd00596		211	cd00596, Peptidase_M14_like, M14 family of metallo	1e-08
cd03857		226	cd03857, M14-like_1, Peptidase M14-like domain; un	6e-08
cd06239		231	cd06239, M14-like_1_2, Peptidase M14-like domain;	8e-08
COG2866		374	COG2866, COG2866, Predicted carboxypeptidase [Amin	9e-07
cd03860		293	cd03860, M14_CP_A-B_like, Peptidase M14 carboxypep	2e-05
cd06907		261	cd06907, M14_AGBL2-3_like, Peptidase M14-like doma	5e-05
cd06906		278	cd06906, M14_Nna1, Peptidase M14-like domain of AT	5e-04
cd03862		273	cd03862, M14-like_7, Peptidase M14-like domain; un	0.002
cd06227		269	cd06227, M14-like_2, Peptidase M14-like domain; un	0.002

>gnl\|CDD\|199860 cd06236, M14_AGBL5_like, Peptidase M14-like domain of ATP/GTP binding protein (AGBL)-5 and related proteins	Back alignment and domain information

 Score =  262 bits (671), Expect = 3e-83
 Identities = 98/148 (66%), Positives = 118/148 (79%)

Query: 431 PNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKK 490
              DDIYY RE +CY+L+GRRVDLLTI+S HG+    EPRLP LFP+ +T RP +FT K+
Sbjct: 9   SPDDDIYYHREVLCYSLDGRRVDLLTITSCHGLLEEREPRLPGLFPDRSTPRPFRFTGKR 68

Query: 491 VVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYR 550
           V FLS+RVHPGETPSSFV NG + FLL +DDP A  LR+ ++FK+IPMLNPDGV RGHYR
Sbjct: 69  VFFLSSRVHPGETPSSFVFNGFLKFLLRKDDPRAQALRRNFVFKLIPMLNPDGVYRGHYR 128

Query: 551 TDTRGVNLNRYYTNPSPVYHPSVFAARS 578
           TDTRGVNLNR Y NP P  HPS++AA++
Sbjct: 129 TDTRGVNLNRVYLNPDPQLHPSIYAAKA 156

Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 308

>gnl\|CDD\|199860 cd06236, M14_AGBL5_like, Peptidase M14-like domain of ATP/GTP binding protein (AGBL)-5 and related proteins	Back alignment and domain information

>gnl\|CDD\|199859 cd06235, M14_Nna1_like_2, Peptidase M14-like domain of human Nna1/AGTPBP-1, AGBL2 -5, and related proteins	Back alignment and domain information

>gnl\|CDD\|133118 cd06908, M14_AGBL4_like, Peptidase M14-like domain of ATP/GTP binding protein AGBL-4 and related proteins	Back alignment and domain information

>gnl\|CDD\|133116 cd06906, M14_Nna1, Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases	Back alignment and domain information

>gnl\|CDD\|133117 cd06907, M14_AGBL2-3_like, Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins	Back alignment and domain information

>gnl\|CDD\|199841 cd03856, M14_Nna1_like, Peptidase M14-like domain of ATP/GTP binding proteins, cytosolic carboxypeptidases and related proteins	Back alignment and domain information

>gnl\|CDD\|199858 cd06234, M14_Nna1_like_1, Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases; uncharacterized bacterial subgroup	Back alignment and domain information

>gnl\|CDD\|215816 pfam00246, Peptidase_M14, Zinc carboxypeptidase	Back alignment and domain information

>gnl\|CDD\|214748 smart00631, Zn_pept, Zn_pept domain	Back alignment and domain information

>gnl\|CDD\|199859 cd06235, M14_Nna1_like_2, Peptidase M14-like domain of human Nna1/AGTPBP-1, AGBL2 -5, and related proteins	Back alignment and domain information

>gnl\|CDD\|199861 cd06237, M14_Nna1_like_3, Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases; uncharacterized bacterial subgroup	Back alignment and domain information

>gnl\|CDD\|199839 cd00596, Peptidase_M14_like, M14 family of metallocarboxypeptidases and related proteins	Back alignment and domain information

>gnl\|CDD\|133069 cd03857, M14-like_1, Peptidase M14-like domain; uncharacterized subfamily	Back alignment and domain information

>gnl\|CDD\|199863 cd06239, M14-like_1_2, Peptidase M14-like domain; uncharacterized subgroup	Back alignment and domain information

>gnl\|CDD\|225421 COG2866, COG2866, Predicted carboxypeptidase [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|199844 cd03860, M14_CP_A-B_like, Peptidase M14 carboxypeptidase subfamily A/B-like	Back alignment and domain information

>gnl\|CDD\|133117 cd06907, M14_AGBL2-3_like, Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins	Back alignment and domain information

>gnl\|CDD\|133116 cd06906, M14_Nna1, Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases	Back alignment and domain information

>gnl\|CDD\|133073 cd03862, M14-like_7, Peptidase M14-like domain; uncharacterized subfamily	Back alignment and domain information

>gnl\|CDD\|199854 cd06227, M14-like_2, Peptidase M14-like domain; uncharacterized subfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		579
KOG3641\|consensus		650		100.0
cd06236		304	M14_AGBL5_like Peptidase M14-like domain of ATP/GT	100.0
cd06236		304	M14_AGBL5_like Peptidase M14-like domain of ATP/GT	100.0
cd06906		278	M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervo	100.0
cd06234		263	M14_Nna1_like_1 A bacterial subgroup of the Peptid	100.0
cd06907		261	M14_AGBL2-3_like Peptidase M14-like domain of ATP/	100.0
cd06908		261	M14_AGBL4_like Peptidase M14-like domain of ATP/GT	100.0
cd06235		258	M14_Nna1_like_2 Subgroup of the Peptidase M14-like	99.98
cd03856		269	M14_Nna1_like Peptidase M14-like domain of Nna-1 (	99.98
cd06907		261	M14_AGBL2-3_like Peptidase M14-like domain of ATP/	99.97
cd06906		278	M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervo	99.96
cd06237		244	M14_Nna1_like_3 A bacterial subgroup of the Peptid	99.95
cd03872		300	M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also know	99.93
cd03868		372	M14_CPD_I The first carboxypeptidase (CP)-like dom	99.93
cd03869		405	M14_CPX_like Peptidase M14-like domain of carboxyp	99.93
cd06247		298	M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO	99.93
cd06248		304	M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/	99.93
cd06245		363	M14_CPD_III The third carboxypeptidase (CP)-like d	99.93
smart00631		277	Zn_pept Zn_pept.	99.93
cd03860		294	M14_CP_A-B_like The Peptidase M14 Carboxypeptidase	99.93
cd03859		295	M14_CPT Peptidase M14-like domain of carboxypeptid	99.93
PF00246		279	Peptidase_M14: Zinc carboxypeptidase This is famil	99.93
cd03858		374	M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub	99.93
cd03863		375	M14_CPD_II The second carboxypeptidase (CP)-like d	99.93
cd03870		301	M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA	99.92
cd06246		300	M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (C	99.92
cd03866		376	M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM	99.92
cd03865		402	M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C	99.92
cd03864		392	M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als	99.92
cd03871		300	M14_CPB Peptidase M14 Carboxypeptidase B (CPB) bel	99.92
cd06227		272	Peptidase_M14-like_2 A functionally uncharacterize	99.91
cd06242		268	Peptidase_M14-like_1_5 Peptidase M14-like domain o	99.91
KOG2650\|consensus		418		99.91
cd06908		261	M14_AGBL4_like Peptidase M14-like domain of ATP/GT	99.91
KOG3641\|consensus		650		99.91
cd06905		360	Peptidase_M14-like_8 A functionally uncharacterize	99.91
cd03867		395	M14_CPZ Peptidase M14-like domain of carboxypeptid	99.91
cd06235		258	M14_Nna1_like_2 Subgroup of the Peptidase M14-like	99.89
cd06239		231	Peptidase_M14-like_1_2 Peptidase M14-like domain o	99.89
cd06241		266	Peptidase_M14-like_1_4 Peptidase M14-like domain o	99.89
cd06226		293	M14_CPT_like Peptidase M14-like domain of an uncha	99.87
cd06244		268	Peptidase_M14-like_1_7 Peptidase M14-like domain o	99.86
cd06238		271	Peptidase_M14-like_1_1 Peptidase M14-like domain o	99.86
cd06243		236	Peptidase_M14-like_1_6 Peptidase M14-like domain o	99.85
cd03857		226	Peptidase_M14-like_1 Peptidase M14-like domain of	99.84
cd06229		255	M14_Endopeptidase_I Peptidase M14-like domain of G	99.83
cd06240		273	Peptidase_M14-like_1_3 Peptidase M14-like domain o	99.83
cd03856		269	M14_Nna1_like Peptidase M14-like domain of Nna-1 (	99.8
cd06228		332	Peptidase_M14-like_3 A functionally uncharacterize	99.79
cd03862		273	Peptidase_M14-like_7 A functionally uncharacterize	99.7
PRK10602		237	murein peptide amidase A; Provisional	99.67
KOG2649\|consensus		500		99.65
cd00596		196	Peptidase_M14_like The M14 family of metallocarbox	99.64
cd06231		236	Peptidase_M14-like_4 A functionally uncharacterize	99.64
cd06232		240	Peptidase_M14-like_5 Peptidase M14-like domain of	99.62
COG2866		374	Predicted carboxypeptidase [Amino acid transport a	99.59
cd06904		178	M14_MpaA_like Peptidase M14-like domain of Escheri	99.5
cd06233		283	Peptidase_M14-like_6 Peptidase M14-like domain of	99.01
cd06250		359	M14_PaAOTO_like An uncharacterized subgroup of the	98.56
cd06230		252	M14_ASTE_ASPA_like The Peptidase M14 Succinylgluta	98.4
cd06255		293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	98.32
cd06251		287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	98.28
cd06254		288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	98.17
cd06253		298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	98.08
PF04952		292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	98.06
cd06252		316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	97.95
TIGR02994		325	ectoine_eutE ectoine utilization protein EutE. Mem	97.71
cd06234		263	M14_Nna1_like_1 A bacterial subgroup of the Peptid	97.69
PF10994		341	DUF2817: Protein of unknown function (DUF2817); In	97.62
cd06256		327	M14_ASTE_ASPA_like_6 A functionally uncharacterize	97.41
PRK02259		288	aspartoacylase; Provisional	97.28
PRK05324		329	succinylglutamate desuccinylase; Provisional	97.27
TIGR03242		319	arg_catab_astE succinylglutamate desuccinylase. Me	97.21
cd06909		282	M14_ASPA Aspartoacylase (ASPA) belongs to the Succ	97.18
cd03855		322	M14_ASTE Peptidase M14 Succinylglutamate desucciny	97.09
cd06910		272	M14_ASTE_ASPA_like_7 A functionally uncharacterize	96.99
COG3608		331	Predicted deacylase [General function prediction o	96.96
cd06227		272	Peptidase_M14-like_2 A functionally uncharacterize	90.09
COG2988		324	Succinylglutamate desuccinylase [Amino acid transp	89.32
cd06237		244	M14_Nna1_like_3 A bacterial subgroup of the Peptid	88.95
PF00246		279	Peptidase_M14: Zinc carboxypeptidase This is famil	88.88

>KOG3641\|consensus	Back alignment and domain information

Probab=100.00  E-value=8.1e-69  Score=571.01  Aligned_cols=306  Identities=34%  Similarity=0.591  Sum_probs=274.6

Q ss_pred             CCCCccCCc---ceeEEEeeecccccccccccCcccc-----cccccccccccccccccccccccccccCCCCCC---Cc
Q psy17594        230 NLPSYIGET---FRTVRLTVEKFNVIESRVLTGEQHL-----WQELSYSMELSTLISIKQLSSILDFITGSESSG---GG  298 (579)
Q Consensus       230 k~P~~~g~~---~~~vv~~~~~~~~~~~rv~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~f~s~f~~~~---~~  298 (579)
                      ..| ++||.   +++| ..+++++.+++||..+.++.     ++.++|+++-+.  .++ .+.+|.|+|+||+||   |+
T Consensus       191 ~~P-~~~H~pi~~k~p-i~e~~~~~q~~ki~~~l~~~~~sd~~~~vv~~ld~~~--~~p-~~~~l~f~s~fesgnLr~Vi  265 (650)
T KOG3641|consen  191 LKP-AVLHPPIYFKAP-IVESRLNSQSSKISSCLPPAPVSDLEKAVVYDLDAHS--TIP-HNAELWFQSEFESGNLRSVI  265 (650)
T ss_pred             ece-ecccCCCccCcc-ceeccccccccchhhhcCCCChhhhhhhhcccccCCc--CCC-CCcceeeecccccCCcceeE
Confidence            556 67766   7788 66788899999999888554     899999998842  243 678899999999998   79


Q ss_pred             cccCceEEEEeccCCCCCCCCCCcceEEEEEEEecCcceEEEEEEEeccccccccccCCcceEEEecC-CcccEEccCCC
Q psy17594        299 EGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHST-RNQWERIREKP  377 (579)
Q Consensus       299 ~~~~~ey~L~lrpD~~~~~~~~g~~qWFyF~V~~~~~~~~~~f~I~N~~K~~sly~~Gm~P~~~s~~~-~~~W~R~~~~~  377 (579)
                      +++..||||+++||+++    +.|.|||||.|+| .+++++.|||+|+.|+.++|++||+|.++|... ..+|.|.++++
T Consensus       266 qv~~~eydL~~~pDtn~----~~~~~wfYfevsg-~~s~ry~FnivN~sk~~tqfe~gmqp~mys~nea~~~~~r~~~~i  340 (650)
T KOG3641|consen  266 QVPQQEYDLFLAPDTNP----NEYGVWFYFEVSG-RASVRYCFNIVNFSKSSTQFENGMQPKMYSLNEAHNDFRRFSEKI  340 (650)
T ss_pred             EecccccceeecCCCCC----cccceEEEEEecC-CcCcceEEEEEeeccchhHHhcccCcceeehhhhhccccccCcce
Confidence            99999999999999987    4789999999999 899999999999999999999999999999754 46788899999


Q ss_pred             eeEec---------CCEEEEEEEEEeccCCceEEEEccCCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecC
Q psy17594        378 TYSYD---------GSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLE  448 (579)
Q Consensus       378 ~y~~~---------~~~~tLsF~~~f~~~~d~vyfA~~~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~e  448 (579)
                      ||+.+         +++|++.|.++|+|. |+|||||+|||||+.|+.+|+.|+...+       ..+|++..+||.|+.
T Consensus       341 cYyrn~~~~~skkgk~yysi~f~v~fphs-d~cyfaYhypyTy~~l~~hLn~les~~~-------~~~yfr~dVl~~tl~  412 (650)
T KOG3641|consen  341 CYYRNRRDNQSKKGKGYYSIYFAVGFPHS-DTCYFAYHYPYTYSQLQCHLNGLESPKN-------PAFYFRYDVLLFTLV  412 (650)
T ss_pred             eeeecccccccccCceEEEEEEEecCCcc-ceEEEeeccCccHHHHHhhhhcccCCCC-------cCcccchheeeeeec
Confidence            99642         368999999999998 9999999999999999999999986532       357999999999999


Q ss_pred             CeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHh
Q psy17594        449 GRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLR  528 (579)
Q Consensus       449 GR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr  528 (579)
                      ||+|+++||+...                        ...+|+|||+|||||||+++||||+|+|++|++ +++.|+.||
T Consensus       413 g~~~~l~tI~~ae------------------------~~~~~~IfLSaRVHpgeTnsSwvmkGilefl~s-~~p~aq~LR  467 (650)
T KOG3641|consen  413 GRAMALATIDMAE------------------------CAPRPVIFLSARVHPGETNSSWVMKGILEFLVS-NSPLAQGLR  467 (650)
T ss_pred             CCccceEEeeHhh------------------------cCCcceEEEecccCCCCCcHHHHHHHHHHHhhc-CCcHHHhhh
Confidence            9999999999421                        136899999999999999999999999999998 688999999


Q ss_pred             cccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhc
Q psy17594        529 KMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS  578 (579)
Q Consensus       529 ~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K~  578 (579)
                      +.|+|||+||||||||++|||||+++|.||||.|.+|++.+||+|||+|+
T Consensus       468 e~~vFKI~PMLNPDGV~~GnyRCSL~G~DLNR~w~tps~~shPsi~~~k~  517 (650)
T KOG3641|consen  468 ESYVFKIVPMLNPDGVIVGNYRCSLMGLDLNRMWSTPSPASHPSIYAVKQ  517 (650)
T ss_pred             hheeEecccccCCCceecccceeccccchhhhhcCCCCcccchhHHhHHH
Confidence            99999999999999999999999999999999999999999999999996

>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins	Back alignment and domain information

>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins	Back alignment and domain information

>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins	Back alignment and domain information

>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins	Back alignment and domain information

>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins	Back alignment and domain information

>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins	Back alignment and domain information

>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins	Back alignment and domain information

>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins	Back alignment and domain information

>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins	Back alignment and domain information

>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins	Back alignment and domain information

>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins	Back alignment and domain information

>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3	Back alignment and domain information

>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3	Back alignment and domain information

>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3	Back alignment and domain information

>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E	Back alignment and domain information

>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3	Back alignment and domain information

>smart00631 Zn_pept Zn_pept	Back alignment and domain information

>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily	Back alignment and domain information

>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification	Back alignment and domain information

>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3	Back alignment and domain information

>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3	Back alignment and domain information

>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3	Back alignment and domain information

>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd06242 Peptidase_M14-like_1_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>KOG2650\|consensus	Back alignment and domain information

>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins	Back alignment and domain information

>KOG3641\|consensus	Back alignment and domain information

>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins	Back alignment and domain information

>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd06241 Peptidase_M14-like_1_4 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins	Back alignment and domain information

>cd06244 Peptidase_M14-like_1_7 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd06243 Peptidase_M14-like_1_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd03857 Peptidase_M14-like_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3	Back alignment and domain information

>cd06240 Peptidase_M14-like_1_3 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins	Back alignment and domain information

>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>PRK10602 murein peptide amidase A; Provisional	Back alignment and domain information

>KOG2649\|consensus	Back alignment and domain information

>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity	Back alignment and domain information

>cd06231 Peptidase_M14-like_4 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]	Back alignment and domain information

>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins	Back alignment and domain information

>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases	Back alignment and domain information

>cd06230 M14_ASTE_ASPA_like The Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily belongs to the M14 family of metallocarboxypeptidases (MCPs), and includes ASTE, which catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3	Back alignment and domain information

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases	Back alignment and domain information

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases	Back alignment and domain information

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases	Back alignment and domain information

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases	Back alignment and domain information

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3	Back alignment and domain information

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases	Back alignment and domain information

>TIGR02994 ectoine_eutE ectoine utilization protein EutE	Back alignment and domain information

>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins	Back alignment and domain information

>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function	Back alignment and domain information

>cd06256 M14_ASTE_ASPA_like_6 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases	Back alignment and domain information

>PRK02259 aspartoacylase; Provisional	Back alignment and domain information

>PRK05324 succinylglutamate desuccinylase; Provisional	Back alignment and domain information

>TIGR03242 arg_catab_astE succinylglutamate desuccinylase	Back alignment and domain information

>cd06909 M14_ASPA Aspartoacylase (ASPA) belongs to the Succinylglutamate desuccinylase/aspartoacylase subfamily of the M14 family of metallocarboxypeptidases	Back alignment and domain information

>cd03855 M14_ASTE Peptidase M14 Succinylglutamate desuccinylase (ASTE, also known as N-succinyl-L-glutamate amidohydrolase, N2-succinylglutamate desuccinylase, and SGDS; EC 3	Back alignment and domain information

>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases	Back alignment and domain information

>COG3608 Predicted deacylase [General function prediction only]	Back alignment and domain information

>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)	Back alignment and domain information

>COG2988 Succinylglutamate desuccinylase [Amino acid transport and metabolism]	Back alignment and domain information

>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins	Back alignment and domain information

>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		579
3l2n_A		395	Crystal Structure Of Putative Carboxypeptidase A (y		6e-15
3k2k_A		403	Crystal Structure Of Putative Carboxypeptidase (Yp_		1e-11
4a37_A		388	Metallo-Carboxypeptidase From Pseudomonas Aeruginos		2e-09

>pdb|3L2N|A Chain A, Crystal Structure Of Putative Carboxypeptidase A (yp_562911.1) From Shewanella Denitrificans Os-217 At 2.39 A Resolution Length = 395

Back alignment and structure

Iteration: 1

Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 52/86 (60%) Query: 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGH 548 KK ++++AR HPGET + +++ G++N LL D P + L F I+P NPDG RGH Sbjct: 175 KKSIWITARQHPGETXAEWLVEGLLNQLLDNDCPTSKALLDKANFYIVPNXNPDGSVRGH 234 Query: 549 YRTDTRGVNLNRYYTNPSPVYHPSVF 574 RT+ G NLNR + PS P V+ Sbjct: 235 LRTNAVGANLNREWQTPSLERSPEVY 260

PyMOL of 3l2n

>pdb|3K2K|A Chain A, Crystal Structure Of Putative Carboxypeptidase (Yp_103406.1) From Burkholderia Mallei Atcc 23344 At 2.49 A Resolution Length = 403

Back alignment and structure

>pdb|4A37|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa Length = 388

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		579
4a37_A		388	Metallo-carboxypeptidase; metallo-protease, hydrol	2e-41
4a37_A		388	Metallo-carboxypeptidase; metallo-protease, hydrol	1e-05
3l2n_A		395	Peptidase M14, carboxypeptidase A; putative carbox	4e-41
3k2k_A		403	Putative carboxypeptidase; structural genomics, jo	8e-36
2qvp_A		275	Uncharacterized protein; putative metallopeptidase	1e-14
3b2y_A		275	Metallopeptidase containing CO-catalytic metalloa	7e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1h8l_A		380	Carboxypeptidase GP180 residues 503-882; hydrolase	3e-06
3prt_A		323	Carboxypeptidase T; hydrolase; 1.66A {Thermoactino	4e-06
1uwy_A		426	Carboxypeptidase M; metallopeptidase, GPI-anchor,	6e-06
2nsm_A		439	Carboxypeptidase N catalytic chain; caroxypeptidas	7e-06
3mn8_A		435	LP15968P; catalytic domain of alpha/beta-hydrolase	1e-05
1jqg_A		433	Carboxypeptidase A; Pro-protein, hydrolase; 2.50A	5e-05
1z5r_A		306	Procarboxypeptidase B; exopeptidase, hydrolase; 1.	6e-05
2bo9_A		308	Carboxypeptidase A4; metallocarboxypeptidase, X-RA	2e-04
1dtd_A		303	Carboxypeptidase A2; carboxypeptidase A2, leech ca	4e-04
2c1c_A		312	Carboxypeptidase B; insect, metalloprotease, insen	5e-04
3d4u_A		309	Tafia, carboxypeptidase B2; protease-inhibitor com	7e-04
1aye_A		401	PCPA2, procarboxypeptidase A2; serine protease, zy	9e-04

>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A {Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A* Length = 388	Back alignment and structure

 Score =  153 bits (387), Expect = 2e-41
 Identities = 54/276 (19%), Positives = 94/276 (34%), Gaps = 50/276 (18%)

Query: 302 DYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVY 361
                +  + D       + +  WFHF ++G +        +VN  +     +       
Sbjct: 33  PRRIRLAIRPDL-----ASQHFQWFHFKVEGMAPATEHCFTLVNAGQSAYSHAWSGYQAV 87

Query: 362 RSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNL 421
            S+    +W R+       YD        +      +S   FA+  PYS           
Sbjct: 88  ASYD-GERWFRVP----SQYDADGLHFQLEPE----ESEVRFAYFEPYSRERHARL---- 134

Query: 422 DAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATC 481
                   +         R  V  +++GR ++LL +  H                     
Sbjct: 135 -------VERALGIEGVERLAVGTSVQGRDIELLRVRRHP-------------------- 167

Query: 482 RPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNP 541
                     +++ A+ HPGE  + + M G+I  L   DD     L +     ++P +NP
Sbjct: 168 -----DSHLKLWVIAQQHPGEHMAEWFMEGLIERLQRPDDTEMQRLLEKADLYLVPNMNP 222

Query: 542 DGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAAR 577
           DG   G+ RT+  G +LNR +  PS    P V+  +
Sbjct: 223 DGAFHGNLRTNAAGQDLNRAWLEPSAERSPEVWFVQ 258

PyMOL of 4a37

>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A {Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A* Length = 388	Back alignment and structure

>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A, structural genomics, joint CENT structural genomics, JCSG; 2.39A {Shewanella denitrificans} Length = 395	Back alignment and structure

>3k2k_A Putative carboxypeptidase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.49A {Burkholderia mallei atcc 23344} Length = 403	Back alignment and structure

>2qvp_A Uncharacterized protein; putative metallopeptidase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.00A {Shewanella amazonensis} Length = 275	Back alignment and structure

>3b2y_A Metallopeptidase containing CO-catalytic metalloa site; metallopeptidase containing CO-catalytic metalloactive site; 1.74A {Shewanella denitrificans OS217} PDB: 3ieh_A* Length = 275	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Length = 380	Back alignment and structure

>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris} PDB: 1obr_A 3qnv_A Length = 323	Back alignment and structure

>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 Length = 426	Back alignment and structure

>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens} Length = 439	Back alignment and structure

>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster} Length = 435	Back alignment and structure

>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa armigera} SCOP: c.56.5.1 d.58.3.1 Length = 433	Back alignment and structure

>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa} SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A* 2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A* 2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A* 2pjc_A* 1zli_A ... Length = 306	Back alignment and structure

>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1 PDB: 4a94_A 2pcu_A* Length = 308	Back alignment and structure

>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase inhibitor, hydrolase/hydrolase inhibitor complex; HET: GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1 Length = 303	Back alignment and structure

>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP: c.56.5.1 Length = 312	Back alignment and structure

>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex, glycoprotein, hydrolase, metal-binding, metalloprotease, protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A Length = 309	Back alignment and structure

>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase; 1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A Length = 401	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		579
3l2n_A		395	Peptidase M14, carboxypeptidase A; putative carbox	100.0
4a37_A		388	Metallo-carboxypeptidase; metallo-protease, hydrol	100.0
3k2k_A		403	Putative carboxypeptidase; structural genomics, jo	100.0
1z5r_A		306	Procarboxypeptidase B; exopeptidase, hydrolase; 1.	99.94
1m4l_A		307	Carboxypeptidase A; metalloproteinase, metalloexop	99.94
3prt_A		323	Carboxypeptidase T; hydrolase; 1.66A {Thermoactino	99.94
3v38_A		326	Carboxypeptidase T; hydrolase; HET: GOL; 1.50A {Th	99.94
1dtd_A		303	Carboxypeptidase A2; carboxypeptidase A2, leech ca	99.93
3mn8_A		435	LP15968P; catalytic domain of alpha/beta-hydrolase	99.93
3d4u_A		309	Tafia, carboxypeptidase B2; protease-inhibitor com	99.93
2c1c_A		312	Carboxypeptidase B; insect, metalloprotease, insen	99.93
2bo9_A		308	Carboxypeptidase A4; metallocarboxypeptidase, X-RA	99.93
1aye_A		401	PCPA2, procarboxypeptidase A2; serine protease, zy	99.93
1kwm_A		402	Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A	99.93
2boa_A		404	Carboxypeptidase A4; metalloprocarboxypeptidase, X	99.92
1uwy_A		426	Carboxypeptidase M; metallopeptidase, GPI-anchor,	99.92
1h8l_A		380	Carboxypeptidase GP180 residues 503-882; hydrolase	99.92
3dgv_A		401	TAFI, carboxypeptidase B2; blood coagulation, fibr	99.92
2nsm_A		439	Carboxypeptidase N catalytic chain; caroxypeptidas	99.92
1pca_A		403	Procarboxypeptidase A PCPA; hydrolase(C-terminal p	99.92
1jqg_A		433	Carboxypeptidase A; Pro-protein, hydrolase; 2.50A	99.91
2qvp_A		275	Uncharacterized protein; putative metallopeptidase	99.85
3b2y_A		275	Metallopeptidase containing CO-catalytic metalloa	99.76
4axv_A		243	MPAA; hydrolase; HET: MSE; 2.17A {Vibrio harveyi}	99.65
2qj8_A		332	MLR6093 protein; structural genomics, joint center	99.09
3cdx_A		354	Succinylglutamatedesuccinylase/aspartoacylase; str	99.03
3fmc_A		368	Putative succinylglutamate desuccinylase / aspart;	98.91
3na6_A		331	Succinylglutamate desuccinylase/aspartoacylase; st	98.74
4a37_A		388	Metallo-carboxypeptidase; metallo-protease, hydrol	98.67
3l2n_A		395	Peptidase M14, carboxypeptidase A; putative carbox	98.57
3k2k_A		403	Putative carboxypeptidase; structural genomics, jo	98.48
1yw6_A		335	Succinylglutamate desuccinylase; alpha-beta protei	98.42
2bco_A		350	Succinylglutamate desuccinylase; NESG, VPR14, stru	98.37
1yw4_A		341	Succinylglutamate desuccinylase; alpha-beta protei	98.06
2gu2_A		312	ASPA protein; aspartoacylase family, aminoacylase-	98.05
3nh4_A		327	Aspartoacylase-2; mercapturates, hydrolase; 2.00A	97.36

>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A, structural genomics, joint CENT structural genomics, JCSG; 2.39A {Shewanella denitrificans}	Back alignment and structure

Probab=100.00  E-value=3.8e-55  Score=468.08  Aligned_cols=243  Identities=27%  Similarity=0.454  Sum_probs=213.0

Q ss_pred             cccccccCCCCCCC---ccccCceEEEEeccCCCCCCCCCCcceEEEEEEEecCcceEEEEEEEeccccccccccCCcce
Q psy17594        284 SILDFITGSESSGG---GEGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPV  360 (579)
Q Consensus       284 ~~l~f~s~f~~~~~---~~~~~~ey~L~lrpD~~~~~~~~g~~qWFyF~V~~~~~~~~~~f~I~N~~K~~sly~~Gm~P~  360 (579)
                      ..+.|+|.|||||.   .++++.||+|+|+||+++     +|+|||||||+|+ +++.++|+|+|+.|  ++|++||+|+
T Consensus        18 ~~~~f~s~FesGnl~~~~~~~~~~~~L~i~~D~~~-----~~~qWF~F~v~~~-~~~~~~~~i~N~~~--s~y~~g~~~y   89 (395)
T 3l2n_A           18 QGMRISANFDGGNIETISLANPDDIQLAIRPDAGG-----EFYQWFNFRFEAT-IGKTYTLNILNAGG--ASYLKGWEDY   89 (395)
T ss_dssp             --CEEECCSTTCBCEEEEEEETTEEEEECCCCTTS-----SCCCCCEEEEECC-TTSEEEEEETTGGG--SSCGGGGTTC
T ss_pred             CCcEEeccCCCCCceEEEecCCCEEEEEECCCCCC-----CCceeEEEEEEcC-CCcEEEEEEEecch--hhhhcccccc
Confidence            45689999999984   455689999999999963     6899999999999 89999999999986  8999999873


Q ss_pred             E-EEecCCcccEEccCCCeeEecCCEEEEEEEEEeccCCceEEEEccCCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEE
Q psy17594        361 Y-RSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYV  439 (579)
Q Consensus       361 ~-~s~~~~~~W~R~~~~~~y~~~~~~~tLsF~~~f~~~~d~vyfA~~~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~  439 (579)
                      - ..+.+++.|+|++..  |  +++  +|||++++  ++|++||||++||||++++++|+.+++ +|          .++
T Consensus        90 ~~~~s~~~~~W~r~~~~--y--~~~--~lt~~~~~--~~d~~~fay~~pyty~~~~~~l~~l~~-~~----------~v~  150 (395)
T 3l2n_A           90 QAVASYDRQTWFRLPTE--Y--KDG--KLSISVEL--DCEAIQIAYFTPYSYERHLDLISAVQL-HP----------LVS  150 (395)
T ss_dssp             CCEEESSSSSCEECCEE--E--ETT--EEEEEEEC--SSSEEEEESSCCCCHHHHHHHHHHGGG-ST----------TEE
T ss_pred             ceeEeeCCCcEEECCce--e--eCC--EEEEEEEc--CCCcEEEEecCCCCHHHHHHHHHHHhc-CC----------ceE
Confidence            2 123478999999742  3  344  56666654  579999999999999999999999975 32          379


Q ss_pred             EEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhC
Q psy17594        440 RECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTR  519 (579)
Q Consensus       440 ~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~  519 (579)
                      +++||+|.+||+|++|+|+++.                         ++||.|||+|+|||+|++|+++++++|++|++.
T Consensus       151 ~~~iG~S~eGR~i~~l~i~~~~-------------------------~~kp~V~i~agiHg~E~~g~~~~~~ll~~L~~~  205 (395)
T 3l2n_A          151 TEHLGLTLDGRDMTLVKVGDDD-------------------------PSKKSIWITARQHPGETMAEWLVEGLLNQLLDN  205 (395)
T ss_dssp             EEEEEECTTSCEEEEEEESCCC-------------------------TTSEEEEEEECSSTTCTHHHHHHHHHHHHHTCT
T ss_pred             EEEEEEcCCCCEEEEEEEecCC-------------------------CCCcEEEEEcccCCCCchHHHHHHHHHHHHhhc
Confidence            9999999999999999998632                         268999999999999999999999999999987


Q ss_pred             CChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhc
Q psy17594        520 DDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS  578 (579)
Q Consensus       520 ~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K~  578 (579)
                      +|+.++.|+++++|+||||+||||++++++|+|+.|+||||+|..|.+.++||++|++.
T Consensus       206 ~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~R~n~~GvDLNRnf~g~~~~sepEt~a~~~  264 (395)
T 3l2n_A          206 DCPTSKALLDKANFYIVPNMNPDGSVRGHLRTNAVGANLNREWQTPSLERSPEVYYVVN  264 (395)
T ss_dssp             TSHHHHHHHHHEEEEEESCSCHHHHHTTCSSCCTTSCCGGGCSSSCCTTTCHHHHHHHH
T ss_pred             CCHHHHHHhhCcEEEEEeccCCchhhhcccccccCCCCcccccCCCCcCCCHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999974

PyMOL of 3l2n

>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A {Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*	Back alignment and structure

>3k2k_A Putative carboxypeptidase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.49A {Burkholderia mallei atcc 23344}	Back alignment and structure

>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa} SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A* 2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A* 2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A* 2pjc_A* 1zli_A ...	Back alignment and structure

>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase, hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A 1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P 1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A* 3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...	Back alignment and structure

>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris} PDB: 1obr_A 3qnv_A	Back alignment and structure

>3v38_A Carboxypeptidase T; hydrolase; HET: GOL; 1.50A {Thermoactinomyces vulgaris} PDB: 1obr_A 3qnv_A 3prt_A	Back alignment and structure

>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase inhibitor, hydrolase/hydrolase inhibitor complex; HET: GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1	Back alignment and structure

>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}	Back alignment and structure

>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex, glycoprotein, hydrolase, metal-binding, metalloprotease, protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A	Back alignment and structure

>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP: c.56.5.1	Back alignment and structure

>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1 PDB: 4a94_A 2pcu_A*	Back alignment and structure

>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase; 1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A	Back alignment and structure

>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A	Back alignment and structure

>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen, metalloprotease, exopropeptidase, hydrolase; HET: NAG; 2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1	Back alignment and structure

>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1	Back alignment and structure

>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*	Back alignment and structure

>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein S glycoprotein, hydrolase, metal-binding, metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A* 3d67_A*	Back alignment and structure

>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}	Back alignment and structure

>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET: CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A	Back alignment and structure

>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa armigera} SCOP: c.56.5.1 d.58.3.1	Back alignment and structure

>2qvp_A Uncharacterized protein; putative metallopeptidase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.00A {Shewanella amazonensis}	Back alignment and structure

>3b2y_A Metallopeptidase containing CO-catalytic metalloa site; metallopeptidase containing CO-catalytic metalloactive site; 1.74A {Shewanella denitrificans OS217} PDB: 3ieh_A*	Back alignment and structure

>4axv_A MPAA; hydrolase; HET: MSE; 2.17A {Vibrio harveyi}	Back alignment and structure

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}	Back alignment and structure

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}	Back alignment and structure

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*	Back alignment and structure

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}	Back alignment and structure

>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A {Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*	Back alignment and structure

>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A, structural genomics, joint CENT structural genomics, JCSG; 2.39A {Shewanella denitrificans}	Back alignment and structure

>3k2k_A Putative carboxypeptidase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.49A {Burkholderia mallei atcc 23344}	Back alignment and structure

>1yw6_A Succinylglutamate desuccinylase; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.10A {Escherichia coli} SCOP: c.56.5.7	Back alignment and structure

>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A	Back alignment and structure

>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7	Back alignment and structure

>2gu2_A ASPA protein; aspartoacylase family, aminoacylase-2, ACY-2, ACY2_RAT, STRU genomics, PSI, protein structure initiative; HET: MSE; 1.80A {Rattus norvegicus} SCOP: c.56.5.7 PDB: 2q4z_A 2i3c_A 2q51_A 2o4h_A* 2o53_A	Back alignment and structure

>3nh4_A Aspartoacylase-2; mercapturates, hydrolase; 2.00A {Mus musculus} SCOP: c.56.5.0 PDB: 3nh5_A 3nfz_A 3nh8_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		579
d1h8la2		301	c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic d	2e-09
d1uwya2		296	c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic d	2e-09
d2bo9a1		305	c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo	3e-07
d1jqga1		317	c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton boll	4e-07
d1ayea1		307	c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo	8e-07
d1m4la_		307	c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus)	3e-06
d2c1ca1		312	c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earwor	2e-05
d1obra_		323	c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyce	2e-04
d1z5ra1		304	c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus sc	4e-04

>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Length = 301	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Pancreatic carboxypeptidases
domain: Carboxypeptidase D, catalytic domain
species: Crested duck (Lophonetta specularioides) [TaxId: 8836]

 Score = 56.8 bits (136), Expect = 2e-09
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 34/169 (20%)

Query: 405 FTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGIT 464
           F + + +S+++  L     ++P         I  +   V  ++E R + ++ IS + GI 
Sbjct: 8   FRH-HHFSDMEIFLRRYANEYP--------SITRLYS-VGKSVELRELYVMEISDNPGIH 57

Query: 465 NVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT--RDDP 522
                                   +        +H  E     ++  +I +L      DP
Sbjct: 58  E---------------------AGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDP 96

Query: 523 IASLLRKMYLFKIIPMLNPDGVARGHYRT-DTRGVNLNRYYTNPSPVYH 570
             + L +     I+P +NPDG  +             N    + +  + 
Sbjct: 97  EVTDLVQSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSNNYDLNRNFP 145

PyMOL of d1h8la2

>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 296	Back information, alignment and structure

>d2bo9a1 c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo sapiens) [TaxId: 9606]} Length = 305	Back information, alignment and structure

>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm (Helicoverpa armigera) [TaxId: 29058]} Length = 317	Back information, alignment and structure

>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens) [TaxId: 9606]} Length = 307	Back information, alignment and structure

>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId: 9913]} Length = 307	Back information, alignment and structure

>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm (Helicoverpa zea) [TaxId: 7113]} Length = 312	Back information, alignment and structure

>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 323	Back information, alignment and structure

>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa) [TaxId: 9823]} Length = 304	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		579
d2bo9a1		305	Carboxypeptidase A {Human (Homo sapiens) [TaxId: 9	99.94
d1h8la2		301	Carboxypeptidase D, catalytic domain {Crested duck	99.93
d1uwya2		296	Carboxypeptidase M, catalytic domain {Human (Homo	99.93
d1m4la_		307	Carboxypeptidase A {Cow (Bos taurus) [TaxId: 9913]	99.92
d1jqga1		317	Carboxypeptidase A {Cotton bollworm (Helicoverpa a	99.92
d1z5ra1		304	Carboxypeptidase B {Pig (Sus scrofa) [TaxId: 9823]	99.92
d1ayea1		307	Carboxypeptidase A {Human (Homo sapiens) [TaxId: 9	99.92
d2c1ca1		312	Carboxypeptidase B {Corn earworm (Helicoverpa zea)	99.92
d1obra_		323	Carboxypeptidase T {Thermoactinomyces vulgaris [Ta	99.91
d2bcoa1		339	Succinylglutamate desuccinylase AstE {Vibrio parah	97.44
d2g9da1		340	Succinylglutamate desuccinylase AstE {Vibrio chole	97.4
d1yw6a1		322	Succinylglutamate desuccinylase AstE {Escherichia	97.37
d1yw4a1		331	Succinylglutamate desuccinylase AstE {Chromobacter	97.22
d2gu2a1		307	Aspartoacylase AspA {Rat (Rattus norvegicus) [TaxI	97.08

>d2bo9a1 c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Pancreatic carboxypeptidases
domain: Carboxypeptidase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.4e-27  Score=240.89  Aligned_cols=143  Identities=21%  Similarity=0.273  Sum_probs=127.1

Q ss_pred             EEccCCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCC
Q psy17594        403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCR  482 (579)
Q Consensus       403 fA~~~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~  482 (579)
                      |+|..++||+++.++|++|++++|+.         ++++.||+|.+||+|++|+||+..+                    
T Consensus         4 f~~~~y~ty~ei~~~l~~la~~~p~~---------~~~~~iG~S~eGr~i~~l~is~~~~--------------------   54 (305)
T d2bo9a1           4 FNYGAYHSLEAIYHEMDNIAADFPDL---------ARRVKIGHSFENRPMYVLKFSTGKG--------------------   54 (305)
T ss_dssp             CCTTSCCCHHHHHHHHHHHHHHSTTT---------EEEEEEEECTTCCEEEEEEECSSTT--------------------
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCc---------eEEEEeeEcCCCCeEEEEEEeCCCC--------------------
Confidence            67888999999999999999999863         7999999999999999999997431                    


Q ss_pred             CCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHh--CCChHHHHHhcccEEEEEeeeCCCeeecC-------------
Q psy17594        483 PKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT--RDDPIASLLRKMYLFKIIPMLNPDGVARG-------------  547 (579)
Q Consensus       483 ~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~--~~d~~a~~Lr~~~vf~IVPmlNPDGv~~G-------------  547 (579)
                          ..||.|+|+|++||+|+.|+.++..+++.|+.  ..++.++.||++++|+||||+||||+.++             
T Consensus        55 ----~~kp~v~i~~~~Hg~E~~g~~~~l~~~~~l~~~~~~~~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~~r~~~~~  130 (305)
T d2bo9a1          55 ----VRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQNRLWRKTRSR  130 (305)
T ss_dssp             ----SCCCEEEEEECSSTTCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHCEEEEESCSCHHHHHHHHHTCTTCCSCCCB
T ss_pred             ----CCCCEEEEEeeccCCcccHHHHHHHHHHHHHHhccccHHHHHHHhcCeEEEEeeccCchhhheeccccccccCCCC
Confidence                35899999999999999999999999999998  36889999999999999999999999754             


Q ss_pred             CCCCCCCCCCCCCCCCC------------------CCCCCChhhhhhhc
Q psy17594        548 HYRTDTRGVNLNRYYTN------------------PSPVYHPSVFAARS  578 (579)
Q Consensus       548 n~R~n~~G~DLNR~w~~------------------P~~~~~Pei~a~K~  578 (579)
                      +.|+++.|+||||+|..                  |.+.+.||+.|++.
T Consensus       131 ~~~~~~~GvDlNRn~~~~~~~~~~~~~p~~~~~~G~~~~sepEt~a~~~  179 (305)
T d2bo9a1         131 NPGSSCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANSEVEVKSVVD  179 (305)
T ss_dssp             CTTCSSBCCCGGGCSSSSTTSSSSBSCTTSTTBCCSSTTCSHHHHHHHH
T ss_pred             CCCCCccccccccccCccCCCCCCCCCCccccccCccccccHHHHHHHH
Confidence            34577899999999964                  56789999999874

PyMOL of d2bo9a1

>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]}	Back information, alignment and structure

>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm (Helicoverpa armigera) [TaxId: 29058]}	Back information, alignment and structure

>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm (Helicoverpa zea) [TaxId: 7113]}	Back information, alignment and structure

>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces vulgaris [TaxId: 2026]}	Back information, alignment and structure

>d2bcoa1 c.56.5.7 (A:4-342) Succinylglutamate desuccinylase AstE {Vibrio parahaemolyticus [TaxId: 670]}	Back information, alignment and structure

>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1yw4a1 c.56.5.7 (A:2-332) Succinylglutamate desuccinylase AstE {Chromobacterium violaceum [TaxId: 536]}	Back information, alignment and structure

>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure