Psyllid ID: psy17612

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MLLFIFFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKVKVRNNSANAGGENSWASKEMLASKADLNVITIMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKVKVRNNSANAGGENSWASKEF
cccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccEEcccccccHHHHccHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEccccEEEEccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHccccccccccccEEEEccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccc
cEEEEEHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccEcHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHccccEEEEccccEEEEccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccEEEccccEEEEccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccc
MLLFIFFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREyidggsanfesplhLLQQRTWLIHWSLFVFfnhvkgrdLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQqesytykdpITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFdgqmlasklnmgtdeaECWIVNLIRNArldakidsklghvimgtqplspyQQLLEKIDTLSVRSEALQALIERKVKVrnnsanaggenswASKEMLASKADLNVITIMLASklnmgtdeAECWIVNLIRNArldakidsklghvimgtqplspyQQLLEKIDTLSVRSEALQALIERKVKVrnnsanaggenswaskef
MLLFIFFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIErkvkvrnnsanaggenswasKEMLASKADLNVITIMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIErkvkvrnnsanaggenswaskef
MLLFIFFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKVKVRNNSANAGGENSWASKEMLASKADLNVITIMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKVKVRNNSANAGGENSWASKEF
*LLFIFFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKV********************LASKADLNVITIMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIE***********************
*LLFIFFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYID*********LHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEAL**********************WASKEMLASKADLNVITIMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEAL****************************
MLLFIFFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKVKVRNNSANAGGENSWASKEMLASKADLNVITIMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKVKVRNNS**************
MLLFIFFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKVKV*********ENSWASKEMLASKADLNVITIMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKVKV******************
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MLLFIFFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPxxxxxxxxxxxxxxxxxxxxxIERKVKVRNNSANAGGENSWASKEMLASKADLNVITIMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPxxxxxxxxxxxxxxxxxxxxxIERKVKVRNNSANAGGENSWASKEF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query449 2.2.26 [Sep-21-2011]
Q2F5R8445 Eukaryotic translation in N/A N/A 0.706 0.712 0.725 1e-142
Q1HQY6435 Eukaryotic translation in N/A N/A 0.699 0.721 0.705 1e-136
B4PK98435 Eukaryotic translation in N/A N/A 0.699 0.721 0.705 1e-134
B3NDH5435 Eukaryotic translation in N/A N/A 0.699 0.721 0.705 1e-134
B4QMY7435 Eukaryotic translation in N/A N/A 0.699 0.721 0.702 1e-134
O77410435 Eukaryotic translation in yes N/A 0.699 0.721 0.702 1e-134
B4KY00434 Eukaryotic translation in N/A N/A 0.688 0.711 0.713 1e-134
B3M4D9434 Eukaryotic translation in N/A N/A 0.688 0.711 0.713 1e-134
B4LG58434 Eukaryotic translation in N/A N/A 0.688 0.711 0.713 1e-134
B4IXG1434 Eukaryotic translation in N/A N/A 0.697 0.721 0.702 1e-134
>sp|Q2F5R8|EIF3E_BOMMO Eukaryotic translation initiation factor 3 subunit E OS=Bombyx mori GN=eIF3-S6 PE=2 SV=1 Back     alignment and function desciption
 Score =  505 bits (1300), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/331 (72%), Positives = 278/331 (83%), Gaps = 14/331 (4%)

Query: 8   FQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQ 67
           ++FK++M++SMY+LAK+RYECGNY  + SYLYF  LVM  +D++YL+VLWGKLASEILVQ
Sbjct: 126 YEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQ 185

Query: 68  NWDLALEDLNKLREYID-GGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFL 126
           NWD AL+DL KLRE+ID GG+ +  S +  LQQRTWL+HWSLFVFFNHVKGRDLII+MFL
Sbjct: 186 NWDGALDDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFL 245

Query: 127 NRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLY 186
            +P YLNAIQTMCPHILRYLATAVIINRS+RNALKDLVKVIQQE+YTY+DPITEF+EHLY
Sbjct: 246 YKPLYLNAIQTMCPHILRYLATAVIINRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLY 305

Query: 187 VSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVI 246
           V+FDFE+AR KL +C  VL  DFFL+ACL+EFVENARLMIFETFCRIHQ ISI       
Sbjct: 306 VNFDFEAARRKLNQCQAVLLTDFFLIACLEEFVENARLMIFETFCRIHQVISI------- 358

Query: 247 DKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEK 306
                  MLA  LNM  DEAECWIVNLIRNARLDAKIDSKLGHV+MG QPLSPYQQL+E+
Sbjct: 359 ------GMLAENLNMQPDEAECWIVNLIRNARLDAKIDSKLGHVVMGAQPLSPYQQLVER 412

Query: 307 IDTLSVRSEALQALIERKVKVRNNSANAGGE 337
           ID+L+VRSEAL +L+ERK K RN     G +
Sbjct: 413 IDSLAVRSEALTSLVERKHKARNQDIRWGAQ 443
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Bombyx mori (taxid: 7091)
>sp|Q1HQY6|EIF3E_AEDAE Eukaryotic translation initiation factor 3 subunit E OS=Aedes aegypti GN=eIF3-S6 PE=2 SV=1 Back     alignment and function description
>sp|B4PK98|EIF3E_DROYA Eukaryotic translation initiation factor 3 subunit E OS=Drosophila yakuba GN=eIF3-S6 PE=3 SV=1 Back     alignment and function description
>sp|B3NDH5|EIF3E_DROER Eukaryotic translation initiation factor 3 subunit E OS=Drosophila erecta GN=eIF3-S6 PE=3 SV=1 Back     alignment and function description
>sp|B4QMY7|EIF3E_DROSI Eukaryotic translation initiation factor 3 subunit E OS=Drosophila simulans GN=eIF3-S6 PE=3 SV=1 Back     alignment and function description
>sp|O77410|EIF3E_DROME Eukaryotic translation initiation factor 3 subunit E OS=Drosophila melanogaster GN=eIF3-S6 PE=2 SV=1 Back     alignment and function description
>sp|B4KY00|EIF3E_DROMO Eukaryotic translation initiation factor 3 subunit E OS=Drosophila mojavensis GN=eIF3-S6 PE=3 SV=1 Back     alignment and function description
>sp|B3M4D9|EIF3E_DROAN Eukaryotic translation initiation factor 3 subunit E OS=Drosophila ananassae GN=eIF3-S6 PE=3 SV=1 Back     alignment and function description
>sp|B4LG58|EIF3E_DROVI Eukaryotic translation initiation factor 3 subunit E OS=Drosophila virilis GN=eIF3-S6 PE=3 SV=1 Back     alignment and function description
>sp|B4IXG1|EIF3E_DROGR Eukaryotic translation initiation factor 3 subunit E OS=Drosophila grimshawi GN=eIF3-S6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
121543721438 putative eukaryotic translation initiati 0.703 0.721 0.770 1e-149
193643668438 PREDICTED: eukaryotic translation initia 0.694 0.712 0.785 1e-148
193678701438 PREDICTED: eukaryotic translation initia 0.694 0.712 0.782 1e-147
242004658436 eukaryotic translation initiation factor 0.699 0.720 0.747 1e-144
307184310437 Probable eukaryotic translation initiati 0.685 0.704 0.752 1e-143
91079354440 PREDICTED: similar to putative eukaryoti 0.690 0.704 0.753 1e-143
307213129437 Probable eukaryotic translation initiati 0.688 0.707 0.746 1e-142
332019917445 Eukaryotic translation initiation factor 0.690 0.696 0.747 1e-142
332373482440 unknown [Dendroctonus ponderosae] 0.688 0.702 0.752 1e-142
383861164437 PREDICTED: eukaryotic translation initia 0.679 0.697 0.756 1e-142
>gi|121543721|gb|ABM55547.1| putative eukaryotic translation initiation factor 3 subunit 6 [Maconellicoccus hirsutus] Back     alignment and taxonomy information
 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/331 (77%), Positives = 286/331 (86%), Gaps = 15/331 (4%)

Query: 8   FQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQ 67
           F FK++ MESMYKLAK+RYECGNYS TTSYLYFYLLVM  SD++YL VLWGKLASEIL+Q
Sbjct: 122 FNFKIENMESMYKLAKYRYECGNYSQTTSYLYFYLLVMSPSDKNYLNVLWGKLASEILIQ 181

Query: 68  NWDLALEDLNKLREYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLN 127
           NW+ ALED+NKLREYID  +  F + L LLQQRTWLIHWSLFVFFNH KG+DLIIDMFL 
Sbjct: 182 NWETALEDINKLREYIDSNA--FANSLQLLQQRTWLIHWSLFVFFNHAKGKDLIIDMFLY 239

Query: 128 RPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYV 187
           RP+YLNAIQTMCPHILRYLATAVIINR +RNALKDLVKVIQQESYTY+DPITEF+EHLYV
Sbjct: 240 RPNYLNAIQTMCPHILRYLATAVIINRGRRNALKDLVKVIQQESYTYRDPITEFIEHLYV 299

Query: 188 SFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVID 247
           +FDFE AR+KL+EC  V+ NDFFL+ACLDEF+ENARLMIFETFCRIHQCISI        
Sbjct: 300 NFDFEGARQKLSECQIVIYNDFFLIACLDEFIENARLMIFETFCRIHQCISI-------- 351

Query: 248 KIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKI 307
                 MLA KLNM ++EAECWIVNLIRNARLDAKIDSKLGHV+MGTQP SPYQQL+EK+
Sbjct: 352 -----NMLAEKLNMKSEEAECWIVNLIRNARLDAKIDSKLGHVVMGTQPTSPYQQLIEKM 406

Query: 308 DTLSVRSEALQALIERKVKVRNNSANAGGEN 338
           D+LSVRSEALQALIERK+K R  + + G  +
Sbjct: 407 DSLSVRSEALQALIERKIKGRPQNIHWGSHD 437

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|193643668|ref|XP_001949492.1| PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|193678701|ref|XP_001952525.1| PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242004658|ref|XP_002423197.1| eukaryotic translation initiation factor 3 subunit, putative [Pediculus humanus corporis] gi|212506162|gb|EEB10459.1| eukaryotic translation initiation factor 3 subunit, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307184310|gb|EFN70768.1| Probable eukaryotic translation initiation factor 3 subunit E [Camponotus floridanus] Back     alignment and taxonomy information
>gi|91079354|ref|XP_969967.1| PREDICTED: similar to putative eukaryotic translation initiation factor 3 subunit 6 [Tribolium castaneum] gi|270003495|gb|EEZ99942.1| hypothetical protein TcasGA2_TC002738 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307213129|gb|EFN88651.1| Probable eukaryotic translation initiation factor 3 subunit E [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332019917|gb|EGI60377.1| Eukaryotic translation initiation factor 3 subunit E [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|332373482|gb|AEE61882.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|383861164|ref|XP_003706056.1| PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
FB|FBgn0025582435 Int6 "Int6 homologue" [Drosoph 0.699 0.721 0.702 2e-120
UNIPROTKB|B5DGH9445 eif3e "Eukaryotic translation 0.701 0.707 0.641 1.3e-109
UNIPROTKB|F1S1G0446 EIF3E "Eukaryotic translation 0.694 0.699 0.645 1.6e-109
UNIPROTKB|Q3T102445 EIF3E "Eukaryotic translation 0.683 0.689 0.652 2.1e-109
UNIPROTKB|E2R1J6445 EIF3E "Eukaryotic translation 0.683 0.689 0.652 2.1e-109
UNIPROTKB|P60228445 EIF3E "Eukaryotic translation 0.683 0.689 0.652 2.1e-109
UNIPROTKB|Q4R6G8445 EIF3E "Eukaryotic translation 0.683 0.689 0.652 2.1e-109
UNIPROTKB|Q5R8K9445 EIF3E "Eukaryotic translation 0.683 0.689 0.652 2.1e-109
MGI|MGI:99257445 Eif3e "eukaryotic translation 0.683 0.689 0.652 2.1e-109
RGD|1311521445 Eif3e "eukaryotic translation 0.683 0.689 0.652 2.1e-109
FB|FBgn0025582 Int6 "Int6 homologue" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
 Identities = 234/333 (70%), Positives = 274/333 (82%)

Query:     8 FQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQ 67
             + FK++ +ES YKLAK+ YECGNY  +TSYLYF L+VM  +D++YL VLWGKLA+EIL  
Sbjct:   119 YNFKVEHLESAYKLAKYLYECGNYQESTSYLYFCLIVMSPNDKNYLNVLWGKLAAEILTL 178

Query:    68 NWDLALEDLNKLREYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLN 127
             NW+ ALEDL +LR+YID  +ANF S +  LQQRTWLIHWS+ VFFNH KGRDLII+MFL 
Sbjct:   179 NWNTALEDLTRLRDYID--NANF-STIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLY 235

Query:   128 RPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYV 187
             +P YLNAIQTMCPHI+RYLATAV+INR++RNALKDL+KVIQQESYTY+DPITEFLE LYV
Sbjct:   236 KPLYLNAIQTMCPHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYV 295

Query:   188 SFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVID 247
             +FDFE AR KL EC  V+ NDFF+VACL+EFVE+ARLMIFETFCRIHQCI+I        
Sbjct:   296 NFDFEGARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQCITIS------- 348

Query:   248 KIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKI 307
                   MLA KLNM  +EAECWIVNLIRNARL+AKIDSKLGHV+MGTQPLSPYQQL+EKI
Sbjct:   349 ------MLADKLNMKPNEAECWIVNLIRNARLNAKIDSKLGHVVMGTQPLSPYQQLVEKI 402

Query:   308 DTLSVRSEALQALIERKVKVRNNSANAGGENSW 340
             D+LS+RSE L  LIERK K + N  +A   +SW
Sbjct:   403 DSLSMRSEHLAGLIERKSKQKQNQESA---DSW 432
GO:0006413 "translational initiation" evidence=ISS
GO:0003743 "translation initiation factor activity" evidence=ISS;NAS
GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS;NAS
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
GO:0005829 "cytosol" evidence=NAS
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0048812 "neuron projection morphogenesis" evidence=IMP
UNIPROTKB|B5DGH9 eif3e "Eukaryotic translation initiation factor 3 subunit E" [Salmo salar (taxid:8030)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1G0 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T102 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1J6 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P60228 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R6G8 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R8K9 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
MGI|MGI:99257 Eif3e "eukaryotic translation initiation factor 3, subunit E" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311521 Eif3e "eukaryotic translation initiation factor 3, subunit E" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2UKS9EIF3E_ASPORNo assigned EC number0.45140.65470.6518yesN/A
Q5ZLA5EIF3E_CHICKNo assigned EC number0.62720.70370.7101yesN/A
Q6DRI1EI3EA_DANRENo assigned EC number0.63310.70370.7085yesN/A
Q2F5R8EIF3E_BOMMONo assigned EC number0.72500.70600.7123N/AN/A
P60228EIF3E_HUMANNo assigned EC number0.63600.70370.7101yesN/A
P60229EIF3E_MOUSENo assigned EC number0.63600.70370.7101yesN/A
Q5R8K9EIF3E_PONABNo assigned EC number0.63600.70370.7101yesN/A
O61820EIF3E_CAEELNo assigned EC number0.51390.67700.7037yesN/A
Q5B973EIF3E_EMENINo assigned EC number0.46030.64580.6473yesN/A
Q6P7L9EIF3E_XENTRNo assigned EC number0.62420.70370.7085yesN/A
B4N3B0EI3E2_DROWINo assigned EC number0.71380.68810.7119N/AN/A
Q3T102EIF3E_BOVINNo assigned EC number0.63600.70370.7101yesN/A
O77410EIF3E_DROMENo assigned EC number0.70270.69930.7218yesN/A
B3NDH5EIF3E_DROERNo assigned EC number0.70570.69930.7218N/AN/A
Q641X8EIF3E_RATNo assigned EC number0.63600.70370.7101yesN/A
B4KY00EIF3E_DROMONo assigned EC number0.71380.68810.7119N/AN/A
B3M4D9EIF3E_DROANNo assigned EC number0.71380.68810.7119N/AN/A
B4MYA1EI3E1_DROWINo assigned EC number0.70760.68810.7119N/AN/A
Q29EX2EIF3E_DROPSNo assigned EC number0.71380.68810.7119yesN/A
B4QMY7EIF3E_DROSINo assigned EC number0.70270.69930.7218N/AN/A
Q1HQY6EIF3E_AEDAENo assigned EC number0.70570.69930.7218N/AN/A
A5AAA4EIF3E_ASPNCNo assigned EC number0.45760.65470.6504yesN/A
Q1LUA8EI3EB_DANRENo assigned EC number0.63010.70370.7085yesN/A
B4PK98EIF3E_DROYANo assigned EC number0.70570.69930.7218N/AN/A
Q4WY08EIF3E_ASPFUNo assigned EC number0.45620.65700.6541yesN/A
B4IXG1EIF3E_DROGRNo assigned EC number0.70270.69710.7211N/AN/A
B4LG58EIF3E_DROVINo assigned EC number0.71380.68810.7119N/AN/A
B4H5N1EIF3E_DROPENo assigned EC number0.71380.68810.7119N/AN/A
Q7QIL8EIF3E_ANOGANo assigned EC number0.70730.68810.7136yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
pfam01399100 pfam01399, PCI, PCI domain 9e-14
smart0075388 smart00753, PAM, PCI/PINT associated module 1e-08
smart0008888 smart00088, PINT, motif in proteasome subunits, In 1e-08
pfam01399100 pfam01399, PCI, PCI domain 2e-06
smart0075388 smart00753, PAM, PCI/PINT associated module 4e-05
smart0008888 smart00088, PINT, motif in proteasome subunits, In 4e-05
>gnl|CDD|216479 pfam01399, PCI, PCI domain Back     alignment and domain information 
 Score = 66.5 bits (163), Expect = 9e-14
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 15/115 (13%)

Query: 178 ITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCI 237
             + L   Y S D     E L +  + L  D  L   L++     R +      + +  I
Sbjct: 1   YRDLLRAFY-SGDLSDFEEILADNEDELL-DDGLAELLEDLRRKIRELNLRRLAKPYSSI 58

Query: 238 SIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIM 292
           S+               LA  L +  DE E  +  LIR+ R+  KID   G V+ 
Sbjct: 59  SLS-------------DLAKLLGLSVDEVEKILSKLIRDGRIRGKIDQVNGIVVF 100

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). Length = 100
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module Back     alignment and domain information
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>gnl|CDD|216479 pfam01399, PCI, PCI domain Back     alignment and domain information
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module Back     alignment and domain information
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 449
KOG2758|consensus432 100.0
KOG0687|consensus393 100.0
KOG1464|consensus440 100.0
COG5187412 RPN7 26S proteasome regulatory complex component, 100.0
KOG2758|consensus432 99.93
PF01399105 PCI: PCI domain; InterPro: IPR000717 A homology do 99.64
KOG0686|consensus466 99.64
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 99.44
smart0075388 PAM PCI/PINT associated module. 99.43
smart0008888 PINT motif in proteasome subunits, Int-6, Nip-1 an 99.43
KOG1463|consensus411 99.12
COG5159421 RPN6 26S proteasome regulatory complex component [ 98.52
KOG2908|consensus380 98.39
smart0075388 PAM PCI/PINT associated module. 98.13
smart0008888 PINT motif in proteasome subunits, Int-6, Nip-1 an 98.13
KOG1498|consensus439 97.77
PF01399105 PCI: PCI domain; InterPro: IPR000717 A homology do 97.76
KOG1497|consensus399 97.59
KOG2753|consensus378 97.45
COG5071439 RPN5 26S proteasome regulatory complex component [ 97.36
PF10075143 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro 96.84
KOG2581|consensus493 96.58
KOG2072|consensus 988 96.26
KOG1076|consensus843 96.11
KOG2688|consensus394 94.96
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 94.09
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 93.9
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 93.18
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 92.4
KOG2582|consensus422 92.28
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 92.02
PF09756188 DDRGK: DDRGK domain; InterPro: IPR019153 This is a 91.92
PRK10803263 tol-pal system protein YbgF; Provisional 91.79
PRK15331165 chaperone protein SicA; Provisional 91.5
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 90.97
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 90.9
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 90.59
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 89.41
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 89.32
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 89.06
cd00189100 TPR Tetratricopeptide repeat domain; typically con 88.79
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 88.72
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 88.3
KOG0687|consensus393 87.98
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 87.34
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 87.08
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 87.08
PRK1543178 ferrous iron transport protein FeoC; Provisional 86.43
PRK11189296 lipoprotein NlpI; Provisional 86.43
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 85.59
KOG2581|consensus493 85.36
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 85.04
cd00189100 TPR Tetratricopeptide repeat domain; typically con 84.17
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 83.92
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 83.66
PF1342844 TPR_14: Tetratricopeptide repeat 83.18
TIGR02552135 LcrH_SycD type III secretion low calcium response 83.17
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 81.9
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 81.77
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 81.22
PF1337173 TPR_9: Tetratricopeptide repeat 81.1
KOG1464|consensus440 81.04
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 80.39
>KOG2758|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.4e-109  Score=819.49  Aligned_cols=310  Identities=68%  Similarity=1.133  Sum_probs=303.9

Q ss_pred             eccCCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612          6 FFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG   85 (449)
Q Consensus         6 ~~~~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~   85 (449)
                      .+|||++|++++|||||||+|+||||+.|+++||+|+.++++.++++++++|||+|+||+++|||.|++++.||||+||+
T Consensus       120 e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs  199 (432)
T KOG2758|consen  120 EHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDS  199 (432)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHhcCccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhc-cccccchHHHH
Q psy17612         86 GSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIIN-RSKRNALKDLV  164 (449)
Q Consensus        86 ~~~~~~~pl~~l~qR~WliHwsLf~ffn~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~-~~r~~~l~dlv  164 (449)
                        +.|.+|..+++|||||+|||||+|||||+|++.++|+|+++|.|+|||||+|||+||||++|+++| ++|++.++|+|
T Consensus       200 --~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlv  277 (432)
T KOG2758|consen  200 --KSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLV  277 (432)
T ss_pred             --cccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHH
Confidence              788999999999999999999999999999999999999999999999999999999999999999 67788999999


Q ss_pred             HHHhhhccCCCchHHHHHHHHhhcccHHHHHHHHHHHhhhcccccchHHhHHHHHHHHHHHHHHHhhhhceeeEeecccc
Q psy17612        165 KVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESN  244 (449)
Q Consensus       165 ~vi~qE~~~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~~d~fvenaR~~ife~ycriy~~IsI~~~~~  244 (449)
                      +||+||+|+|+||+|+|++|+|++|||++||++|++|++||.|||||++|.++|+|+||++|||+|||||+||+|     
T Consensus       278 kVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~E~ARl~ifEtfCRIHqcIti-----  352 (432)
T KOG2758|consen  278 KVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFLENARLLIFETFCRIHQCITI-----  352 (432)
T ss_pred             HHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHheeH-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             ccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCCCChHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy17612        245 VIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERK  324 (449)
Q Consensus       245 ~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~~s~Yqqviek~d~L~~R~q~L~~~i~~~  324 (449)
                              +|||++|||+++|+|+||||+||++||+|||||+.|+|+|++|+.|+|||+|++|+.|++|+|.|+..++++
T Consensus       353 --------~mLA~kLnm~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~~s~~qQ~ie~tksLS~rsq~la~~lek~  424 (432)
T KOG2758|consen  353 --------DMLADKLNMDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPTVSPHQQLIEKTKSLSFRSQNLAQQLEKK  424 (432)
T ss_pred             --------HHHHHHhcCCHHHHHHHHHHHHHHhhhhhhhccccCceeecCCCCCHHHHHHHhccccchhHHHHHHHHHHH
Confidence                    999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcC
Q psy17612        325 VKVRNN  330 (449)
Q Consensus       325 ~~~~~~  330 (449)
                      .++.+.
T Consensus       425 ~~~~~~  430 (432)
T KOG2758|consen  425 IQQKKH  430 (432)
T ss_pred             HHHhhc
Confidence            776643

>KOG0687|consensus Back     alignment and domain information
>KOG1464|consensus Back     alignment and domain information
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2758|consensus Back     alignment and domain information
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins Back     alignment and domain information
>KOG0686|consensus Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>smart00753 PAM PCI/PINT associated module Back     alignment and domain information
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>KOG1463|consensus Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2908|consensus Back     alignment and domain information
>smart00753 PAM PCI/PINT associated module Back     alignment and domain information
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>KOG1498|consensus Back     alignment and domain information
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins Back     alignment and domain information
>KOG1497|consensus Back     alignment and domain information
>KOG2753|consensus Back     alignment and domain information
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8 Back     alignment and domain information
>KOG2581|consensus Back     alignment and domain information
>KOG2072|consensus Back     alignment and domain information
>KOG1076|consensus Back     alignment and domain information
>KOG2688|consensus Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>KOG2582|consensus Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>KOG0687|consensus Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PRK15431 ferrous iron transport protein FeoC; Provisional Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>KOG2581|consensus Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG1464|consensus Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 5e-13
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 6e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 7e-04
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Length = 394 Back     alignment and structure
 Score = 69.5 bits (169), Expect = 5e-13
 Identities = 39/304 (12%), Positives = 91/304 (29%), Gaps = 27/304 (8%)

Query: 20  KLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKL 79
           +L    ++   Y+   +     L  +   D   L V    L S+        AL +L K 
Sbjct: 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTY-----HALSNLPKA 158

Query: 80  REYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFL-NRPHYLNAIQTM 138
           R  +        +     + +  L   S  +     +        F      + +     
Sbjct: 159 RAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVK 218

Query: 139 CPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHL---YVSFDFESAR 195
               L+Y+    I+   + + +     V  + + TY     + ++ +            +
Sbjct: 219 ALTSLKYMLLCKIML-GQSDDVN--QLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQ 275

Query: 196 EKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQML 255
             L E  + L  D  + A L    +             +  + +               +
Sbjct: 276 AALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAH-------------V 322

Query: 256 ASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGT--QPLSPYQQLLEKIDTLSVR 313
           A  + +   + E  +  +I + +    +D   G +I+         Y+++LE I ++   
Sbjct: 323 AESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKV 382

Query: 314 SEAL 317
            + L
Sbjct: 383 VDTL 386
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Length = 394 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Length = 203 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 100.0
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 99.97
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 99.89
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 99.79
4b4t_O393 26S proteasome regulatory subunit RPN9; hydrolase, 99.68
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 99.53
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 99.24
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 98.98
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 98.72
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 98.6
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 98.56
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 98.48
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 98.07
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 97.88
4b0z_A229 RPN12, 26S proteasome regulatory subunit RPN12; pr 97.11
4b4t_O393 26S proteasome regulatory subunit RPN9; hydrolase, 96.52
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 96.38
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 96.12
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 96.0
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 95.81
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 95.11
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 95.09
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 94.24
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 94.13
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 94.08
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 93.77
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 93.51
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 93.4
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 93.1
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 93.06
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 92.86
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 92.83
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 92.81
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 92.61
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 92.58
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 92.53
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 92.46
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 92.34
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 92.32
3k9i_A117 BH0479 protein; putative protein binding protein, 92.15
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 92.11
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 92.1
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 92.1
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 92.08
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 92.06
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 92.05
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 92.02
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 91.9
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 91.87
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 91.71
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 91.42
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 91.36
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 91.22
4eqf_A365 PEX5-related protein; accessory protein, tetratric 91.16
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 91.07
2gw1_A514 Mitochondrial precursor proteins import receptor; 91.07
2l6j_A111 TPR repeat-containing protein associated with HSP; 91.05
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 91.0
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 90.94
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 90.93
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 90.87
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 90.77
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 90.62
3u4t_A272 TPR repeat-containing protein; structural genomics 90.61
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 90.53
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 90.43
3q49_B137 STIP1 homology and U box-containing protein 1; E3 90.41
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 90.39
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 90.29
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 89.93
3t5v_A316 Nuclear mRNA export protein SAC3; PCI, mRNA nuclea 89.84
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 89.83
2kat_A115 Uncharacterized protein; NESG, structure, structur 89.76
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 89.61
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 89.47
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 89.39
2gw1_A514 Mitochondrial precursor proteins import receptor; 89.38
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 89.35
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 89.31
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 89.26
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 89.25
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 89.2
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 89.18
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 89.14
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 89.12
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 88.94
4eqf_A365 PEX5-related protein; accessory protein, tetratric 88.89
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 88.74
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 88.54
3q15_A378 PSP28, response regulator aspartate phosphatase H; 88.53
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 88.41
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 88.41
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 88.15
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 88.12
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 88.04
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 88.03
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 88.02
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 87.91
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 87.83
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 87.75
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 87.74
3u4t_A272 TPR repeat-containing protein; structural genomics 87.6
3q49_B137 STIP1 homology and U box-containing protein 1; E3 87.57
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 87.37
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 87.3
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 86.94
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 86.87
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 86.52
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 86.5
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 86.45
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 86.43
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 86.09
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 86.05
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 85.95
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 85.93
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 85.91
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 85.65
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 85.15
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 84.99
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 84.97
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 84.95
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 84.3
4i17_A228 Hypothetical protein; TPR repeats protein, structu 84.22
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 84.11
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 84.1
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 83.92
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 83.43
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 83.39
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 83.34
3u3w_A293 Transcriptional activator PLCR protein; ternary co 83.29
1rz4_A226 Eukaryotic translation initiation factor 3 subuni; 82.8
4i17_A228 Hypothetical protein; TPR repeats protein, structu 82.62
2heo_A67 Z-DNA binding protein 1; protein DLM1-Z-DNA comple 82.26
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 82.01
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 81.69
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 81.3
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 80.92
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 80.85
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.9e-43  Score=362.26  Aligned_cols=293  Identities=15%  Similarity=0.132  Sum_probs=231.8

Q ss_pred             eccCCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612          6 FFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG   85 (449)
Q Consensus         6 ~~~~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~   85 (449)
                      .++..+.|++++++++|+||++||||++|.+++..++..|++.+.+ ++.+|+.+++.++.+||..+...++|++.+++.
T Consensus       122 ~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k-id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~  200 (429)
T 4b4t_R          122 EDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAK-IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK  200 (429)
T ss_dssp             HCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             hhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence            3466788899999999999999999999999999999999877655 999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHhcCccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhccccccch-----
Q psy17612         86 GSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNAL-----  160 (449)
Q Consensus        86 ~~~~~~~pl~~l~qR~WliHwsLf~ffn~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~~r~~~l-----  160 (449)
                      +++|  .++..++...|++||+..-|.   .|...|+|+|.   +|....-.....++.|.+++++++.+|.+..     
T Consensus       201 ~~d~--~~~~~lk~~~gl~~l~~r~f~---~Aa~~f~e~~~---t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~  272 (429)
T 4b4t_R          201 GGDW--ERRNRYKTYYGIHCLAVRNFK---EAAKLLVDSLA---TFTSIELTSYESIATYASVTGLFTLERTDLKSKVID  272 (429)
T ss_dssp             CCCT--HHHHHHHHHHHHGGGGTSCHH---HHHHHHHHHHH---HSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSS
T ss_pred             CCCH--HHHHHHHHHHHHHHHHhChHH---HHHHHHHHHhc---cCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            7765  345567788899999876665   58999999998   6666655666689999999999998886543     


Q ss_pred             -HHHHHHHhhhccCCCchHHHHHHHHhhcccHHHHHHHHHHHhhhcccccchHHhHHHHHHHHHHHHHHHhhhhceeeEe
Q psy17612        161 -KDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISI  239 (449)
Q Consensus       161 -~dlv~vi~qE~~~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~~d~fvenaR~~ife~ycriy~~IsI  239 (449)
                       +++..++..++  .-+|+++|+.++|....++-++..+..+...+..|+||++|.++|.+++|..++.+||+||++|+|
T Consensus       273 ~~~~~~~l~~~p--~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l  350 (429)
T 4b4t_R          273 SPELLSLISTTA--ALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSL  350 (429)
T ss_dssp             SHHHHHGGGSHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEH
T ss_pred             CHHHHhhccCCh--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeH
Confidence             33344443333  346689999999998777777777888899999999999999999999999999999999999999


Q ss_pred             eccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCC--CChHHHHHHhhhhhhhHHHHH
Q psy17612        240 QKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP--LSPYQQLLEKIDTLSVRSEAL  317 (449)
Q Consensus       240 ~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~--~s~Yqqviek~d~L~~R~q~L  317 (449)
                                   +.||+.||+|++++|+||++||++|||+||||+++|+|++++|+  ++.||++|++||.|++|+|+|
T Consensus       351 -------------~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl  417 (429)
T 4b4t_R          351 -------------KSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKY  417 (429)
T ss_dssp             -------------HHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-------------------------
T ss_pred             -------------HHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence                         99999999999999999999999999999999999999999986  589999999999999999999


Q ss_pred             HHHHH
Q psy17612        318 QALIE  322 (449)
Q Consensus       318 ~~~i~  322 (449)
                      +++|+
T Consensus       418 ~~~i~  422 (429)
T 4b4t_R          418 GAAVR  422 (429)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            99985
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Back     alignment and structure
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Back     alignment and structure
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe} Back     alignment and structure
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18 Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 449
d1ufma_84 a.4.5.47 (A:) COP9 signalosome complex subunit 4, 5e-09
d1ufma_84 a.4.5.47 (A:) COP9 signalosome complex subunit 4, 1e-07
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 84 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (121), Expect = 5e-09
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 17/81 (20%)

Query: 218 FVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNA 277
            +E+  L   + +  I                   + L + L +   +AE     +I   
Sbjct: 16  VIEHNLLSASKLYNNIT-----------------FEELGALLEIPAAKAEKIASQMITEG 58

Query: 278 RLDAKIDSKLGHVIMGTQPLS 298
           R++  ID   G V   T+  S
Sbjct: 59  RMNGFIDQIDGIVHFETREAS 79
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 84 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
d1ufma_84 COP9 signalosome complex subunit 4, GSN4 {Mouse (M 99.21
d1ufma_84 COP9 signalosome complex subunit 4, GSN4 {Mouse (M 98.29
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 93.07
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 92.92
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 92.66
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 90.74
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 90.07
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 88.95
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 88.02
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 87.54
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 87.09
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 87.04
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 86.45
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 85.74
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 85.04
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 83.58
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 83.54
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 82.54
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 82.03
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 81.58
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 80.88
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 80.85
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 80.66
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.4e-11  Score=99.58  Aligned_cols=64  Identities=19%  Similarity=0.184  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCCC
Q psy17612        221 NARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPL  297 (449)
Q Consensus       221 naR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~~  297 (449)
                      +.+-.-+..+-++|.+|+|             +.||+.||++++++|.+|+++|.+++|+||||+++|+|++.++..
T Consensus        15 ~i~Ehni~~is~~Y~~Isl-------------~~la~~l~l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~e~   78 (84)
T d1ufma_          15 AVIEHNLLSASKLYNNITF-------------EELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA   78 (84)
T ss_dssp             HHHHHHHHHHHHSCSEEEH-------------HHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred             HHHHHHHHHHHHhhceeeH-------------HHHHHHHCCCHHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCCCc
Confidence            3444445578899999999             999999999999999999999999999999999999999988753
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure